@jbrowse/plugin-linear-genome-view 2.1.6 → 2.2.0

package/dist/LinearBasicDisplay/model.js

@@ -35,121 +35,177 @@ const Visibility_1 = __importDefault(require("@mui/icons-material/Visibility"));
 // locals
 const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
 const SetMaxHeightDlg = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SetMaxHeight'))));
-const stateModelFactory = (configSchema) => mobx_state_tree_1.types
-    .compose('LinearBasicDisplay', BaseLinearDisplay_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
-    type: mobx_state_tree_1.types.literal('LinearBasicDisplay'),
-    trackShowLabels: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
-    trackShowDescriptions: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
-    trackDisplayMode: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
-    trackMaxHeight: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
-    configuration: (0, configuration_1.ConfigurationReference)(configSchema),
-}))
-    .views(self => ({
-    get rendererTypeName() {
-        return (0, configuration_1.getConf)(self, ['renderer', 'type']);
-    },
-    get showLabels() {
-        var _a;
-        return (_a = self.trackShowLabels) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'showLabels']);
-    },
-    get showDescriptions() {
-        var _a;
-        return ((_a = self.trackShowDescriptions) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'showDescriptions']));
-    },
-    get maxHeight() {
-        var _a;
-        return (_a = self.trackMaxHeight) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'maxHeight']);
-    },
-    get displayMode() {
-        var _a;
-        return ((_a = self.trackDisplayMode) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'displayMode']));
-    },
-}))
-    .views(self => ({
-    get rendererConfig() {
-        const configBlob = (0, configuration_1.getConf)(self, ['renderer']) || {};
-        const config = configBlob;
-        return self.rendererType.configSchema.create({
-            ...config,
-            showLabels: self.showLabels,
-            showDescriptions: self.showDescriptions,
-            displayMode: self.displayMode,
-            maxHeight: self.maxHeight,
-        }, (0, mobx_state_tree_1.getEnv)(self));
-    },
-}))
-    .actions(self => ({
-    toggleShowLabels() {
-        self.trackShowLabels = !self.showLabels;
-    },
-    toggleShowDescriptions() {
-        self.trackShowDescriptions = !self.showDescriptions;
-    },
-    setDisplayMode(val) {
-        self.trackDisplayMode = val;
-    },
-    setMaxHeight(val) {
-        self.trackMaxHeight = val;
-    },
-}))
-    .views(self => {
-    const { trackMenuItems: superTrackMenuItems, renderProps: superRenderProps, } = self;
-    return {
-        renderProps() {
-            const config = self.rendererConfig;
-            const superProps = superRenderProps();
-            const superPropsOmit = superProps;
-            return {
-                ...superPropsOmit,
-                config,
-            };
+/**
+ * #stateModel LinearBasicDisplay
+ * used by `FeatureTrack`, has simple settings like "show/hide feature labels", etc.
+ */
+function stateModelFactory(configSchema) {
+    return mobx_state_tree_1.types
+        .compose('LinearBasicDisplay', BaseLinearDisplay_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
+        /**
+         * #property
+         */
+        type: mobx_state_tree_1.types.literal('LinearBasicDisplay'),
+        /**
+         * #property
+         */
+        trackShowLabels: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
+        /**
+         * #property
+         */
+        trackShowDescriptions: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.boolean),
+        /**
+         * #property
+         */
+        trackDisplayMode: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
+        /**
+         * #property
+         */
+        trackMaxHeight: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.number),
+        /**
+         * #property
+         */
+        configuration: (0, configuration_1.ConfigurationReference)(configSchema),
+    }))
+        .views(self => ({
+        /**
+         * #getter
+         */
+        get rendererTypeName() {
+            return (0, configuration_1.getConf)(self, ['renderer', 'type']);
         },
-        trackMenuItems() {
-            return [
-                ...superTrackMenuItems(),
-                {
-                    label: 'Show labels',
-                    icon: Visibility_1.default,
-                    type: 'checkbox',
-                    checked: self.showLabels,
-                    onClick: () => {
-                        self.toggleShowLabels();
+        /**
+         * #getter
+         */
+        get showLabels() {
+            var _a;
+            return (_a = self.trackShowLabels) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'showLabels']);
+        },
+        /**
+         * #getter
+         */
+        get showDescriptions() {
+            var _a;
+            return ((_a = self.trackShowDescriptions) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'showDescriptions']));
+        },
+        /**
+         * #getter
+         */
+        get maxHeight() {
+            var _a;
+            return (_a = self.trackMaxHeight) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'maxHeight']);
+        },
+        /**
+         * #getter
+         */
+        get displayMode() {
+            var _a;
+            return ((_a = self.trackDisplayMode) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'displayMode']));
+        },
+    }))
+        .views(self => ({
+        /**
+         * #getter
+         */
+        get rendererConfig() {
+            const configBlob = (0, configuration_1.getConf)(self, ['renderer']) || {};
+            const config = configBlob;
+            return self.rendererType.configSchema.create({
+                ...config,
+                showLabels: self.showLabels,
+                showDescriptions: self.showDescriptions,
+                displayMode: self.displayMode,
+                maxHeight: self.maxHeight,
+            }, (0, mobx_state_tree_1.getEnv)(self));
+        },
+    }))
+        .actions(self => ({
+        /**
+         * #action
+         */
+        toggleShowLabels() {
+            self.trackShowLabels = !self.showLabels;
+        },
+        /**
+         * #action
+         */
+        toggleShowDescriptions() {
+            self.trackShowDescriptions = !self.showDescriptions;
+        },
+        /**
+         * #action
+         */
+        setDisplayMode(val) {
+            self.trackDisplayMode = val;
+        },
+        /**
+         * #action
+         */
+        setMaxHeight(val) {
+            self.trackMaxHeight = val;
+        },
+    }))
+        .views(self => {
+        const { trackMenuItems: superTrackMenuItems, renderProps: superRenderProps, } = self;
+        return {
+            /**
+             * #method
+             */
+            renderProps() {
+                const config = self.rendererConfig;
+                const superProps = superRenderProps();
+                const superPropsOmit = superProps;
+                return {
+                    ...superPropsOmit,
+                    config,
+                };
+            },
+            /**
+             * #method
+             */
+            trackMenuItems() {
+                return [
+                    ...superTrackMenuItems(),
+                    {
+                        label: 'Show labels',
+                        icon: Visibility_1.default,
+                        type: 'checkbox',
+                        checked: self.showLabels,
+                        onClick: () => self.toggleShowLabels(),
+                    },
+                    {
+                        label: 'Show descriptions',
+                        icon: Visibility_1.default,
+                        type: 'checkbox',
+                        checked: self.showDescriptions,
+                        onClick: () => self.toggleShowDescriptions(),
                     },
-                },
-                {
-                    label: 'Show descriptions',
-                    icon: Visibility_1.default,
-                    type: 'checkbox',
-                    checked: self.showDescriptions,
-                    onClick: () => self.toggleShowDescriptions(),
-                },
-                {
-                    label: 'Display mode',
-                    icon: Visibility_1.default,
-                    subMenu: [
-                        'compact',
-                        'reducedRepresentation',
-                        'normal',
-                        'collapse',
-                    ].map(val => ({
-                        label: val,
+                    {
+                        label: 'Display mode',
+                        icon: Visibility_1.default,
+                        subMenu: [
+                            'compact',
+                            'reducedRepresentation',
+                            'normal',
+                            'collapse',
+                        ].map(val => ({
+                            label: val,
+                            onClick: () => self.setDisplayMode(val),
+                        })),
+                    },
+                    {
+                        label: 'Set max height',
                         onClick: () => {
-                            self.setDisplayMode(val);
+                            (0, util_1.getSession)(self).queueDialog(handleClose => [
+                                SetMaxHeightDlg,
+                                { model: self, handleClose },
+                            ]);
                         },
-                    })),
-                },
-                {
-                    label: 'Set max height',
-                    onClick: () => {
-                        (0, util_1.getSession)(self).queueDialog(handleClose => [
-                            SetMaxHeightDlg,
-                            { model: self, handleClose },
-                        ]);
                     },
-                },
-            ];
-        },
-    };
-});
+                ];
+            },
+        };
+    });
+}
 exports.default = stateModelFactory;
 //# sourceMappingURL=model.js.map

package/dist/LinearBasicDisplay/model.js.map

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+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/LinearBasicDisplay/model.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,iCAA4B;AAC5B,+DAIoC;AACpC,6CAA+C;AAE/C,qDAAyD;AAEzD,QAAQ;AACR,gFAA2D;AAE3D,SAAS;AACT,4DAAwD;AAExD,MAAM,eAAe,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,2BAA2B,GAAC,CAAC,CAAA;AAEvE;;;GAGG;AACH,SAAS,iBAAiB,CAAC,YAAwC;IACjE,OAAO,uBAAK;SACT,OAAO,CACN,oBAAoB,EACpB,qCAAiB,EACjB,uBAAK,CAAC,KAAK,CAAC;QACV;;WAEG;QACH,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,oBAAoB,CAAC;QACzC;;WAEG;QACH,eAAe,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,OAAO,CAAC;QAC3C;;WAEG;QACH,qBAAqB,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,OAAO,CAAC;QACjD;;WAEG;QACH,gBAAgB,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,MAAM,CAAC;QAC3C;;WAEG;QACH,cAAc,EAAE,uBAAK,CAAC,KAAK,CAAC,uBAAK,CAAC,MAAM,CAAC;QACzC;;WAEG;QACH,aAAa,EAAE,IAAA,sCAAsB,EAAC,YAAY,CAAC;KACpD,CAAC,CACH;SACA,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,gBAAgB;YAClB,OAAO,IAAA,uBAAO,EAAC,IAAI,EAAE,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC,CAAA;QAC5C,CAAC;QAED;;WAEG;QACH,IAAI,UAAU;;YACZ,OAAO,MAAA,IAAI,CAAC,eAAe,mCAAI,IAAA,uBAAO,EAAC,IAAI,EAAE,CAAC,UAAU,EAAE,YAAY,CAAC,CAAC,CAAA;QAC1E,CAAC;QAED;;WAEG;QACH,IAAI,gBAAgB;;YAClB,OAAO,CACL,MAAA,IAAI,CAAC,qBAAqB,mCAC1B,IAAA,uBAAO,EAAC,IAAI,EAAE,CAAC,UAAU,EAAE,kBAAkB,CAAC,CAAC,CAChD,CAAA;QACH,CAAC;QAED;;WAEG;QACH,IAAI,SAAS;;YACX,OAAO,MAAA,IAAI,CAAC,cAAc,mCAAI,IAAA,uBAAO,EAAC,IAAI,EAAE,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC,CAAA;QACxE,CAAC;QAED;;WAEG;QACH,IAAI,WAAW;;YACb,OAAO,CACL,MAAA,IAAI,CAAC,gBAAgB,mCAAI,IAAA,uBAAO,EAAC,IAAI,EAAE,CAAC,UAAU,EAAE,aAAa,CAAC,CAAC,CACpE,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd;;WAEG;QACH,IAAI,cAAc;YAChB,MAAM,UAAU,GAAG,IAAA,uBAAO,EAAC,IAAI,EAAE,CAAC,UAAU,CAAC,CAAC,IAAI,EAAE,CAAA;YACpD,MAAM,MAAM,GAAG,UAA6C,CAAA;YAE5D,OAAO,IAAI,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,CAC1C;gBACE,GAAG,MAAM;gBACT,UAAU,EAAE,IAAI,CAAC,UAAU;gBAC3B,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;gBACvC,WAAW,EAAE,IAAI,CAAC,WAAW;gBAC7B,SAAS,EAAE,IAAI,CAAC,SAAS;aAC1B,EACD,IAAA,wBAAM,EAAC,IAAI,CAAC,CACb,CAAA;QACH,CAAC;KACF,CAAC,CAAC;SAEF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB;;WAEG;QACH,gBAAgB;YACd,IAAI,CAAC,eAAe,GAAG,CAAC,IAAI,CAAC,UAAU,CAAA;QACzC,CAAC;QACD;;WAEG;QACH,sBAAsB;YACpB,IAAI,CAAC,qBAAqB,GAAG,CAAC,IAAI,CAAC,gBAAgB,CAAA;QACrD,CAAC;QACD;;WAEG;QACH,cAAc,CAAC,GAAW;YACxB,IAAI,CAAC,gBAAgB,GAAG,GAAG,CAAA;QAC7B,CAAC;QACD;;WAEG;QACH,YAAY,CAAC,GAAW;YACtB,IAAI,CAAC,cAAc,GAAG,GAAG,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE;QACZ,MAAM,EACJ,cAAc,EAAE,mBAAmB,EACnC,WAAW,EAAE,gBAAgB,GAC9B,GAAG,IAAI,CAAA;QACR,OAAO;YACL;;eAEG;YACH,WAAW;gBACT,MAAM,MAAM,GAAG,IAAI,CAAC,cAAc,CAAA;gBAClC,MAAM,UAAU,GAAG,gBAAgB,EAAE,CAAA;gBACrC,MAAM,cAAc,GAAG,UAA6C,CAAA;gBACpE,OAAO;oBACL,GAAG,cAAc;oBACjB,MAAM;iBACP,CAAA;YACH,CAAC;YAED;;eAEG;YACH,cAAc;gBACZ,OAAO;oBACL,GAAG,mBAAmB,EAAE;oBACxB;wBACE,KAAK,EAAE,aAAa;wBACpB,IAAI,EAAE,oBAAc;wBACpB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,IAAI,CAAC,UAAU;wBACxB,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,gBAAgB,EAAE;qBACvC;oBACD;wBACE,KAAK,EAAE,mBAAmB;wBAC1B,IAAI,EAAE,oBAAc;wBACpB,IAAI,EAAE,UAAU;wBAChB,OAAO,EAAE,IAAI,CAAC,gBAAgB;wBAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,sBAAsB,EAAE;qBAC7C;oBACD;wBACE,KAAK,EAAE,cAAc;wBACrB,IAAI,EAAE,oBAAc;wBACpB,OAAO,EAAE;4BACP,SAAS;4BACT,uBAAuB;4BACvB,QAAQ;4BACR,UAAU;yBACX,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;4BACZ,KAAK,EAAE,GAAG;4BACV,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,cAAc,CAAC,GAAG,CAAC;yBACxC,CAAC,CAAC;qBACJ;oBACD;wBACE,KAAK,EAAE,gBAAgB;wBACvB,OAAO,EAAE,GAAG,EAAE;4BACZ,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAC,WAAW,CAAC,WAAW,CAAC,EAAE,CAAC;gCAC1C,eAAe;gCACf,EAAE,KAAK,EAAE,IAAI,EAAE,WAAW,EAAE;6BAC7B,CAAC,CAAA;wBACJ,CAAC;qBACF;iBACF,CAAA;YACH,CAAC;SACF,CAAA;IACH,CAAC,CAAC,CAAA;AACN,CAAC;AAKD,kBAAe,iBAAiB,CAAA"}

package/dist/LinearGenomeView/components/ImportForm.js

@@ -36,7 +36,6 @@ const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 // locals
 const RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
 const util_2 = require("./util");
-const __1 = require("..");
 const SearchResultsDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./SearchResultsDialog'))));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     importFormContainer: {
@@ -65,8 +64,13 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
         : 'No configured assemblies';
     const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
     const err = assemblyError || importError;
-    const [myVal, setValue] = (0, react_1.useState)('');
-    const value = myVal || ((_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName);
+    const [value, setValue] = (0, react_1.useState)('');
+    const r0 = (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName;
+    // useEffect resets to an "initial state" of displaying first region from assembly
+    // after assembly change
+    (0, react_1.useEffect)(() => {
+        setValue(r0);
+    }, [r0]);
     function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
@@ -120,7 +124,6 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
             session.notify(`${e}`, 'warning');
         }
     }
-    const height = __1.WIDGET_HEIGHT + 5;
     // implementation notes:
     // having this wrapped in a form allows intuitive use of enter key to submit
     return (react_1.default.createElement("div", { className: classes.container },
@@ -135,31 +138,34 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
                 } },
                 react_1.default.createElement(material_1.Grid, { container: true, spacing: 1, justifyContent: "center", alignItems: "center" },
                     react_1.default.createElement(material_1.Grid, { item: true },
-                        react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => {
-                                setImportError('');
-                                setSelectedAsm(val);
-                                setValue('');
-                            }, session: session, selected: selectedAsm, InputProps: { style: { height } } })),
-                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (err ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(RefNameAutocomplete_1.default, { fetchResults: queryString => (0, util_2.fetchResults)({
-                            queryString,
-                            assembly,
-                            textSearchManager,
-                            rankSearchResults,
-                            searchScope,
-                        }), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value, 
-                        // note: minWidth 270 accomodates full width of helperText
-                        minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
-                            variant: 'outlined',
-                            helperText: 'Enter sequence name, feature name, or location',
-                            style: { minWidth: '175px' },
-                            InputProps: { style: { height } },
-                        } })) : (react_1.default.createElement(material_1.CircularProgress, { role: "progressbar", size: 20, disableShrink: true }))) : null),
+                        react_1.default.createElement(material_1.FormControl, null,
+                            react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => {
+                                    setImportError('');
+                                    setSelectedAsm(val);
+                                    setValue('');
+                                }, session: session, selected: selectedAsm }))),
+                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (err ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(material_1.FormControl, null,
+                        react_1.default.createElement(RefNameAutocomplete_1.default, { fetchResults: queryString => (0, util_2.fetchResults)({
+                                queryString,
+                                assembly,
+                                textSearchManager,
+                                rankSearchResults,
+                                searchScope,
+                            }), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value, 
+                            // note: minWidth 270 accomodates full width of helperText
+                            minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
+                                variant: 'outlined',
+                                helperText: 'Enter sequence name, feature name, or location',
+                                style: { minWidth: '175px' },
+                            } }))) : (react_1.default.createElement(material_1.CircularProgress, { role: "progressbar", size: 20, disableShrink: true }))) : null),
                     react_1.default.createElement(material_1.Grid, { item: true },
-                        react_1.default.createElement(material_1.Button, { type: "submit", disabled: !value, className: classes.button, variant: "contained", color: "primary" }, "Open"),
-                        react_1.default.createElement(material_1.Button, { disabled: !value, className: classes.button, onClick: () => {
-                                model.setError(undefined);
-                                model.showAllRegionsInAssembly(selectedAsm);
-                            }, variant: "contained", color: "secondary" }, "Show all regions in assembly"))))),
+                        react_1.default.createElement(material_1.FormControl, null,
+                            react_1.default.createElement(material_1.Button, { type: "submit", disabled: !value, className: classes.button, variant: "contained", color: "primary" }, "Open")),
+                        react_1.default.createElement(material_1.FormControl, null,
+                            react_1.default.createElement(material_1.Button, { disabled: !value, className: classes.button, onClick: () => {
+                                    model.setError(undefined);
+                                    model.showAllRegionsInAssembly(selectedAsm);
+                                }, variant: "contained", color: "secondary" }, "Show all regions in assembly")))))),
         isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog, { model: model, optAssemblyName: selectedAsm, handleClose: () => model.setSearchResults(undefined, undefined) })) : null));
 });
 exports.default = ImportForm;

package/dist/LinearGenomeView/components/ImportForm.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ImportForm.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAwD;AACxD,uCAA0C;AAC1C,2CAAqC;AACrC,6CAA+C;AAC/C,4CAMsB;AACtB,yCAAiE;AAEjE,sEAAiD;AAEjD,SAAS;AACT,gFAAuD;AACvD,iCAAgD;AAEhD,MAAM,mBAAmB,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,uBAAuB,GAAC,CAAC,CAAA;AAEvE,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AAIH,MAAM,UAAU,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;;IACxD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,iBAAiB,EAAE,GAAG,OAAO,CAAA;IACrE,MAAM,EAAE,iBAAiB,EAAE,uBAAuB,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAA;IAChE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACrD,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,GAAc,CAAA;IAElD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;IAElD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,WAAW,CAAC,CAAA;IACjD,MAAM,aAAa,GAAG,aAAa,CAAC,MAAM;QACxC,CAAC,CAAC,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,KAAK;QACjB,CAAC,CAAC,0BAA0B,CAAA;IAC9B,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IACvC,MAAM,GAAG,GAAG,aAAa,IAAI,WAAW,CAAA;IACxC,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACtC,MAAM,EAAE,GAAG,MAAA,OAAO,CAAC,CAAC,CAAC,0CAAE,OAAO,CAAA;IAE9B,kFAAkF;IAClF,wBAAwB;IACxB,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,QAAQ,CAAC,EAAE,CAAC,CAAA;IACd,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAER,SAAS,WAAW,CAAC,MAAkB;QACrC,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACnC,IAAI,QAAQ,EAAE;YACZ,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAA;YAC3C,IAAI,OAAO,EAAE;gBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;aACzB;SACF;IACH,CAAC;IAED,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,KAAa;QAC/C,IAAI;YACF,IAAI,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,gBAAgB,EAAE,MAAK,KAAK,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE;gBAChE,WAAW,CAAC,MAAM,CAAC,CAAA;aACpB;iBAAM;gBACL,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACzC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,wBAAwB,KAAI,EAAE,CAAA;gBACxD,IACE,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;oBACvB,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EAC5D;oBACA,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,WAAW,CAAC,CAAA;iBACzC;qBAAM;oBACL,MAAM,OAAO,GAAG,MAAM,IAAA,mBAAY,EAAC;wBACjC,WAAW,EAAE,KAAK;wBAClB,UAAU,EAAE,OAAO;wBACnB,WAAW;wBACX,iBAAiB;wBACjB,iBAAiB;wBACjB,QAAQ;qBACT,CAAC,CAAA;oBAEF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;wBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;qBACrD;yBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;wBAC/B,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;qBACxB;yBAAM;wBACL,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,WAAW,CAAC,CAAA;qBACzC;iBACF;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,wBAAwB;IACxB,4EAA4E;IAC5E,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC9B,GAAG,CAAC,CAAC,CAAC,8BAAC,iBAAY,IAAC,KAAK,EAAE,GAAG,GAAI,CAAC,CAAC,CAAC,IAAI;QAC1C,8BAAC,oBAAS,IAAC,SAAS,EAAE,OAAO,CAAC,mBAAmB;YAC/C,wCACE,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,KAAK,CAAC,cAAc,EAAE,CAAA;oBACtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACzB,IAAI,KAAK,EAAE;wBACT,oBAAoB,CAAC,KAAK,CAAC,CAAA;qBAC5B;gBACH,CAAC;gBAED,8BAAC,eAAI,IACH,SAAS,QACT,OAAO,EAAE,CAAC,EACV,cAAc,EAAC,QAAQ,EACvB,UAAU,EAAC,QAAQ;oBAEnB,8BAAC,eAAI,IAAC,IAAI;wBACR,8BAAC,sBAAW;4BACV,8BAAC,qBAAgB,IACf,QAAQ,EAAE,GAAG,CAAC,EAAE;oCACd,cAAc,CAAC,EAAE,CAAC,CAAA;oCAClB,cAAc,CAAC,GAAG,CAAC,CAAA;oCACnB,QAAQ,CAAC,EAAE,CAAC,CAAA;gCACd,CAAC,EACD,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,WAAW,GACrB,CACU,CACT;oBACP,8BAAC,eAAI,IAAC,IAAI,UACP,WAAW,CAAC,CAAC,CAAC,CACb,GAAG,CAAC,CAAC,CAAC,CACJ,8BAAC,eAAS,IAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,GAAI,CACvC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CACV,8BAAC,sBAAW;wBACV,8BAAC,6BAAmB,IAClB,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,IAAA,mBAAY,EAAC;gCACX,WAAW;gCACX,QAAQ;gCACR,iBAAiB;gCACjB,iBAAiB;gCACjB,WAAW;6BACZ,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,YAAY,EAAE,aAAa,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,EACrD,KAAK,EAAE,KAAK;4BACZ,0DAA0D;4BAC1D,QAAQ,EAAE,GAAG,EACb,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,EAC9B,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAC/B,cAAc,EAAE;gCACd,OAAO,EAAE,UAAU;gCACnB,UAAU,EACR,gDAAgD;gCAClD,KAAK,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE;6BAC7B,GACD,CACU,CACf,CAAC,CAAC,CAAC,CACF,8BAAC,2BAAgB,IACf,IAAI,EAAC,aAAa,EAClB,IAAI,EAAE,EAAE,EACR,aAAa,SACb,CACH,CACF,CAAC,CAAC,CAAC,IAAI,CACH;oBACP,8BAAC,eAAI,IAAC,IAAI;wBACR,8BAAC,sBAAW;4BACV,8BAAC,iBAAM,IACL,IAAI,EAAC,QAAQ,EACb,QAAQ,EAAE,CAAC,KAAK,EAChB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,E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package/dist/LinearGenomeView/components/LinearGenomeView.js

@@ -21,32 +21,12 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         paddingTop: theme.spacing(1),
         paddingBottom: theme.spacing(1),
     },
-    dots: {
-        '&::after': {
-            display: 'inline-block',
-            animation: '$ellipsis 1.5s infinite',
-            content: '"."',
-            width: '1em',
-            textAlign: 'left',
-        },
-    },
-    '@keyframes ellipsis': {
-        '0%': {
-            content: '"."',
-        },
-        '33%': {
-            content: '".."',
-        },
-        '66%': {
-            content: '"..."',
-        },
-    },
 }));
 const LinearGenomeView = (0, mobx_react_1.observer)(({ model }) => {
     const { tracks, error, initialized, hasDisplayedRegions } = model;
     const { classes } = useStyles();
     if (!initialized && !error) {
-        return (react_1.default.createElement(material_1.Typography, { className: classes.dots, variant: "h5" }, "Loading"));
+        return react_1.default.createElement(ui_1.LoadingEllipses, { variant: "h5" });
     }
     if (!hasDisplayedRegions || error) {
         return react_1.default.createElement(ImportForm_1.default, { model: model });

package/dist/LinearGenomeView/components/LinearGenomeView.js.map

@@ -1 +1 @@
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+{"version":3,"file":"LinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/LinearGenomeView.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAAyD;AACzD,uCAA0C;AAC1C,+DAAoD;AACpD,kDAA2E;AAC3E,yCAAgE;AAChE,2CAAqC;AAIrC,sEAA6C;AAC7C,wEAA+C;AAC/C,8DAAqC;AACrC,4EAAmD;AACnD,gFAAuD;AAIvD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC5B,aAAa,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAChC;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,gBAAgB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC9D,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IACjE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,IAAI,CAAC,WAAW,IAAI,CAAC,KAAK,EAAE;QAC1B,OAAO,8BAAC,oBAAe,IAAC,OAAO,EAAC,IAAI,GAAG,CAAA;KACxC;IACD,IAAI,CAAC,mBAAmB,IAAI,KAAK,EAAE;QACjC,OAAO,8BAAC,oBAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACpC;IAED,MAAM,qBAAqB,GAAG,KAAK,CAAC,qBAAqB,EAAE,CAAA;IAC3D,MAAM,eAAe,GAAG,KAAK,CAAC,eAAe,EAAE,CAAA;IAE/C,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QACjC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC1B,8BAAC,2BAAiB,IAChB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,wBAAwB,CAAC,KAAK,CAAC,GACxD,CACH,CAAC,CAAC,CAAC,IAAI;QACP,KAAK,CAAC,uBAAuB,CAAC,CAAC,CAAC,CAC/B,8BAAC,6BAAmB,IAClB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,SAAS,CAAC,GAC/D,CACH,CAAC,CAAC,CAAC,IAAI;QACR,8BAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,8BAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI;QACvC,8BAAC,yBAAe,IAAC,KAAK,EAAE,KAAK,IAC1B,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAChB,8BAAC,gBAAK,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAE,OAAO,CAAC,IAAI,IAC9C,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC3B;YACE,8BAAC,qBAAU,4BAA+B;YAC1C,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,KAAK,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,EACvB,SAAS,EAAE,8BAAC,qBAAiB,OAAG,0BAGzB,CACR,CACJ,CAAC,CAAC,CAAC,CACF,uCAAK,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,GAAQ,CACvC,CACK,CACT,CAAC,CAAC,CAAC,CACF,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,8BAAC,oCAAa,IACZ,GAAG,EAAE,KAAK,CAAC,EAAE,EACb,iBAAiB,EAAE,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,8BAAC,iBAAY,IAAC,KAAK,EAAE,KAAK,GAAI;YAEhE,8BAAC,wBAAc,IAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI,CAChC,CACjB,CAAC,CACH,CACe,CACd,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,gBAAgB,CAAA"}

package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js

@@ -116,6 +116,7 @@ function SVGTracks({ displayResults, model, offset, }) {
 // render LGV to SVG
 async function renderToSvg(model, opts) {
     await (0, mobx_1.when)(() => model.initialized);
+    const { Wrapper = ({ children }) => react_1.default.createElement(react_1.default.Fragment, null, children) } = opts;
     const { width, tracks, showCytobands } = model;
     const shift = 50;
     const offset = headerHeight +
@@ -130,11 +131,12 @@ async function renderToSvg(model, opts) {
         return { track, result };
     }));
     // the xlink namespace is used for rendering <image> tag
-    return (0, server_1.renderToStaticMarkup)(react_1.default.createElement("svg", { width: width, height: height, xmlns: "http://www.w3.org/2000/svg", xmlnsXlink: "http://www.w3.org/1999/xlink", viewBox: [0, 0, width + shift * 2, height].toString() },
-        react_1.default.createElement("rect", { width: width + shift * 2, height: height, fill: "white" }),
-        react_1.default.createElement("g", { stroke: "none", transform: `translate(${shift} ${fontSize})` },
-            react_1.default.createElement(SVGHeader, { model: model }),
-            react_1.default.createElement(SVGTracks, { model: model, displayResults: displayResults, offset: offset }))));
+    return (0, server_1.renderToStaticMarkup)(react_1.default.createElement(Wrapper, null,
+        react_1.default.createElement("svg", { width: width, height: height, xmlns: "http://www.w3.org/2000/svg", xmlnsXlink: "http://www.w3.org/1999/xlink", viewBox: [0, 0, width + shift * 2, height].toString() },
+            react_1.default.createElement("rect", { width: width + shift * 2, height: height, fill: "white" }),
+            react_1.default.createElement("g", { stroke: "none", transform: `translate(${shift} ${fontSize})` },
+                react_1.default.createElement(SVGHeader, { model: model }),
+                react_1.default.createElement(SVGTracks, { model: model, displayResults: displayResults, offset: offset })))));
 }
 exports.renderToSvg = renderToSvg;
 //# sourceMappingURL=LinearGenomeViewSvg.js.map

package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map

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