@jbrowse/plugin-linear-genome-view 2.1.6 → 2.2.0

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Files changed (109) hide show
  1. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -2
  2. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +2 -22
  3. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  4. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +146 -1
  5. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +600 -464
  6. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  7. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +19 -1
  8. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
  9. package/dist/BasicTrack/configSchema.d.ts +3 -0
  10. package/dist/BasicTrack/configSchema.js +18 -0
  11. package/dist/BasicTrack/configSchema.js.map +1 -0
  12. package/dist/BasicTrack/index.d.ts +3 -0
  13. package/dist/BasicTrack/index.js +18 -0
  14. package/dist/BasicTrack/index.js.map +1 -0
  15. package/dist/FeatureTrack/configSchema.d.ts +3 -0
  16. package/dist/FeatureTrack/configSchema.js +21 -0
  17. package/dist/FeatureTrack/configSchema.js.map +1 -0
  18. package/dist/FeatureTrack/index.d.ts +3 -0
  19. package/dist/FeatureTrack/index.js +18 -0
  20. package/dist/FeatureTrack/index.js.map +1 -0
  21. package/dist/LinearBareDisplay/configSchema.d.ts +5 -1
  22. package/dist/LinearBareDisplay/configSchema.js +12 -1
  23. package/dist/LinearBareDisplay/configSchema.js.map +1 -1
  24. package/dist/LinearBareDisplay/model.d.ts +16 -0
  25. package/dist/LinearBareDisplay/model.js +16 -0
  26. package/dist/LinearBareDisplay/model.js.map +1 -1
  27. package/dist/LinearBasicDisplay/configSchema.d.ts +5 -1
  28. package/dist/LinearBasicDisplay/configSchema.js +16 -1
  29. package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
  30. package/dist/LinearBasicDisplay/model.d.ts +77 -6
  31. package/dist/LinearBasicDisplay/model.js +167 -111
  32. package/dist/LinearBasicDisplay/model.js.map +1 -1
  33. package/dist/LinearGenomeView/components/ImportForm.js +34 -28
  34. package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
  35. package/dist/LinearGenomeView/components/LinearGenomeView.js +1 -21
  36. package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  37. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +7 -5
  38. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
  39. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +26 -34
  40. package/dist/LinearGenomeView/index.d.ts +189 -15
  41. package/dist/LinearGenomeView/index.js +266 -27
  42. package/dist/LinearGenomeView/index.js.map +1 -1
  43. package/dist/index.d.ts +12 -84
  44. package/dist/index.js +4 -25
  45. package/dist/index.js.map +1 -1
  46. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -2
  47. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +2 -22
  48. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  49. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +146 -1
  50. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +600 -464
  51. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  52. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +19 -1
  53. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
  54. package/esm/BasicTrack/configSchema.d.ts +3 -0
  55. package/esm/BasicTrack/configSchema.js +16 -0
  56. package/esm/BasicTrack/configSchema.js.map +1 -0
  57. package/esm/BasicTrack/index.d.ts +3 -0
  58. package/esm/BasicTrack/index.js +13 -0
  59. package/esm/BasicTrack/index.js.map +1 -0
  60. package/esm/FeatureTrack/configSchema.d.ts +3 -0
  61. package/esm/FeatureTrack/configSchema.js +19 -0
  62. package/esm/FeatureTrack/configSchema.js.map +1 -0
  63. package/esm/FeatureTrack/index.d.ts +3 -0
  64. package/esm/FeatureTrack/index.js +13 -0
  65. package/esm/FeatureTrack/index.js.map +1 -0
  66. package/esm/LinearBareDisplay/configSchema.d.ts +5 -1
  67. package/esm/LinearBareDisplay/configSchema.js +14 -2
  68. package/esm/LinearBareDisplay/configSchema.js.map +1 -1
  69. package/esm/LinearBareDisplay/model.d.ts +16 -0
  70. package/esm/LinearBareDisplay/model.js +16 -0
  71. package/esm/LinearBareDisplay/model.js.map +1 -1
  72. package/esm/LinearBasicDisplay/configSchema.d.ts +5 -1
  73. package/esm/LinearBasicDisplay/configSchema.js +18 -2
  74. package/esm/LinearBasicDisplay/configSchema.js.map +1 -1
  75. package/esm/LinearBasicDisplay/model.d.ts +77 -6
  76. package/esm/LinearBasicDisplay/model.js +167 -111
  77. package/esm/LinearBasicDisplay/model.js.map +1 -1
  78. package/esm/LinearGenomeView/components/ImportForm.js +36 -30
  79. package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
  80. package/esm/LinearGenomeView/components/LinearGenomeView.js +2 -22
  81. package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  82. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +7 -5
  83. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
  84. package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +26 -34
  85. package/esm/LinearGenomeView/index.d.ts +189 -15
  86. package/esm/LinearGenomeView/index.js +266 -27
  87. package/esm/LinearGenomeView/index.js.map +1 -1
  88. package/esm/index.d.ts +12 -84
  89. package/esm/index.js +4 -25
  90. package/esm/index.js.map +1 -1
  91. package/package.json +2 -2
  92. package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +2 -24
  93. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +695 -555
  94. package/src/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.ts +20 -1
  95. package/src/BasicTrack/configSchema.ts +23 -0
  96. package/src/BasicTrack/index.ts +22 -0
  97. package/src/FeatureTrack/configSchema.ts +27 -0
  98. package/src/FeatureTrack/index.ts +21 -0
  99. package/src/LinearBareDisplay/configSchema.ts +15 -2
  100. package/src/LinearBareDisplay/model.ts +16 -0
  101. package/src/LinearBasicDisplay/configSchema.ts +19 -2
  102. package/src/LinearBasicDisplay/model.ts +63 -11
  103. package/src/LinearGenomeView/components/ImportForm.tsx +79 -63
  104. package/src/LinearGenomeView/components/LinearGenomeView.tsx +2 -26
  105. package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +21 -18
  106. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +204 -204
  107. package/src/LinearGenomeView/index.test.ts +33 -26
  108. package/src/LinearGenomeView/index.tsx +317 -60
  109. package/src/index.ts +6 -46
package/src/index.ts CHANGED
@@ -1,11 +1,6 @@
1
1
  import { lazy } from 'react'
2
2
  import { when } from 'mobx'
3
- import { ConfigurationSchema } from '@jbrowse/core/configuration'
4
- import {
5
- createBaseTrackConfig,
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- createBaseTrackModel,
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- } from '@jbrowse/core/pluggableElementTypes/models'
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- import TrackType from '@jbrowse/core/pluggableElementTypes/TrackType'
3
+
9
4
  import DisplayType from '@jbrowse/core/pluggableElementTypes/DisplayType'
10
5
  import ViewType from '@jbrowse/core/pluggableElementTypes/ViewType'
11
6
  import Plugin from '@jbrowse/core/Plugin'
@@ -38,6 +33,9 @@ import {
38
33
  modelFactory as linearBasicDisplayModelFactory,
39
34
  } from './LinearBasicDisplay'
40
35
 
36
+ import FeatureTrackF from './FeatureTrack'
37
+ import BasicTrackF from './BasicTrack'
38
+
41
39
  type LGV = LinearGenomeViewModel
42
40
 
43
41
  export default class LinearGenomeViewPlugin extends Plugin {
@@ -53,46 +51,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
53
51
  }
54
52
 
55
53
  install(pluginManager: PluginManager) {
56
- pluginManager.addTrackType(() => {
57
- const configSchema = ConfigurationSchema(
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- 'FeatureTrack',
59
- {},
60
- {
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- baseConfiguration: createBaseTrackConfig(pluginManager),
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- explicitIdentifier: 'trackId',
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- },
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- )
65
- return new TrackType({
66
- name: 'FeatureTrack',
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- configSchema,
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- stateModel: createBaseTrackModel(
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- pluginManager,
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- 'FeatureTrack',
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- configSchema,
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- ),
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- })
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- })
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-
76
- pluginManager.addTrackType(() => {
77
- const configSchema = ConfigurationSchema(
78
- 'BasicTrack',
79
- {},
80
- {
81
- baseConfiguration: createBaseTrackConfig(pluginManager),
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- explicitIdentifier: 'trackId',
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- },
84
- )
85
- return new TrackType({
86
- name: 'BasicTrack',
87
- configSchema,
88
- stateModel: createBaseTrackModel(
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- pluginManager,
90
- 'BasicTrack',
91
- configSchema,
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- ),
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- })
94
- })
95
-
54
+ FeatureTrackF(pluginManager)
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+ BasicTrackF(pluginManager)
96
56
  pluginManager.addDisplayType(() => {
97
57
  const configSchema = linearBareDisplayConfigSchemaFactory(pluginManager)
98
58
  return new DisplayType({