@jbrowse/plugin-linear-genome-view 2.1.6 → 2.2.0

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Files changed (109) hide show
  1. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -2
  2. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +2 -22
  3. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  4. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +146 -1
  5. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +600 -464
  6. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  7. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +19 -1
  8. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
  9. package/dist/BasicTrack/configSchema.d.ts +3 -0
  10. package/dist/BasicTrack/configSchema.js +18 -0
  11. package/dist/BasicTrack/configSchema.js.map +1 -0
  12. package/dist/BasicTrack/index.d.ts +3 -0
  13. package/dist/BasicTrack/index.js +18 -0
  14. package/dist/BasicTrack/index.js.map +1 -0
  15. package/dist/FeatureTrack/configSchema.d.ts +3 -0
  16. package/dist/FeatureTrack/configSchema.js +21 -0
  17. package/dist/FeatureTrack/configSchema.js.map +1 -0
  18. package/dist/FeatureTrack/index.d.ts +3 -0
  19. package/dist/FeatureTrack/index.js +18 -0
  20. package/dist/FeatureTrack/index.js.map +1 -0
  21. package/dist/LinearBareDisplay/configSchema.d.ts +5 -1
  22. package/dist/LinearBareDisplay/configSchema.js +12 -1
  23. package/dist/LinearBareDisplay/configSchema.js.map +1 -1
  24. package/dist/LinearBareDisplay/model.d.ts +16 -0
  25. package/dist/LinearBareDisplay/model.js +16 -0
  26. package/dist/LinearBareDisplay/model.js.map +1 -1
  27. package/dist/LinearBasicDisplay/configSchema.d.ts +5 -1
  28. package/dist/LinearBasicDisplay/configSchema.js +16 -1
  29. package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
  30. package/dist/LinearBasicDisplay/model.d.ts +77 -6
  31. package/dist/LinearBasicDisplay/model.js +167 -111
  32. package/dist/LinearBasicDisplay/model.js.map +1 -1
  33. package/dist/LinearGenomeView/components/ImportForm.js +34 -28
  34. package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
  35. package/dist/LinearGenomeView/components/LinearGenomeView.js +1 -21
  36. package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  37. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +7 -5
  38. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
  39. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +26 -34
  40. package/dist/LinearGenomeView/index.d.ts +189 -15
  41. package/dist/LinearGenomeView/index.js +266 -27
  42. package/dist/LinearGenomeView/index.js.map +1 -1
  43. package/dist/index.d.ts +12 -84
  44. package/dist/index.js +4 -25
  45. package/dist/index.js.map +1 -1
  46. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -2
  47. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +2 -22
  48. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  49. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +146 -1
  50. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +600 -464
  51. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  52. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +19 -1
  53. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
  54. package/esm/BasicTrack/configSchema.d.ts +3 -0
  55. package/esm/BasicTrack/configSchema.js +16 -0
  56. package/esm/BasicTrack/configSchema.js.map +1 -0
  57. package/esm/BasicTrack/index.d.ts +3 -0
  58. package/esm/BasicTrack/index.js +13 -0
  59. package/esm/BasicTrack/index.js.map +1 -0
  60. package/esm/FeatureTrack/configSchema.d.ts +3 -0
  61. package/esm/FeatureTrack/configSchema.js +19 -0
  62. package/esm/FeatureTrack/configSchema.js.map +1 -0
  63. package/esm/FeatureTrack/index.d.ts +3 -0
  64. package/esm/FeatureTrack/index.js +13 -0
  65. package/esm/FeatureTrack/index.js.map +1 -0
  66. package/esm/LinearBareDisplay/configSchema.d.ts +5 -1
  67. package/esm/LinearBareDisplay/configSchema.js +14 -2
  68. package/esm/LinearBareDisplay/configSchema.js.map +1 -1
  69. package/esm/LinearBareDisplay/model.d.ts +16 -0
  70. package/esm/LinearBareDisplay/model.js +16 -0
  71. package/esm/LinearBareDisplay/model.js.map +1 -1
  72. package/esm/LinearBasicDisplay/configSchema.d.ts +5 -1
  73. package/esm/LinearBasicDisplay/configSchema.js +18 -2
  74. package/esm/LinearBasicDisplay/configSchema.js.map +1 -1
  75. package/esm/LinearBasicDisplay/model.d.ts +77 -6
  76. package/esm/LinearBasicDisplay/model.js +167 -111
  77. package/esm/LinearBasicDisplay/model.js.map +1 -1
  78. package/esm/LinearGenomeView/components/ImportForm.js +36 -30
  79. package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
  80. package/esm/LinearGenomeView/components/LinearGenomeView.js +2 -22
  81. package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  82. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +7 -5
  83. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
  84. package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +26 -34
  85. package/esm/LinearGenomeView/index.d.ts +189 -15
  86. package/esm/LinearGenomeView/index.js +266 -27
  87. package/esm/LinearGenomeView/index.js.map +1 -1
  88. package/esm/index.d.ts +12 -84
  89. package/esm/index.js +4 -25
  90. package/esm/index.js.map +1 -1
  91. package/package.json +2 -2
  92. package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +2 -24
  93. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +695 -555
  94. package/src/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.ts +20 -1
  95. package/src/BasicTrack/configSchema.ts +23 -0
  96. package/src/BasicTrack/index.ts +22 -0
  97. package/src/FeatureTrack/configSchema.ts +27 -0
  98. package/src/FeatureTrack/index.ts +21 -0
  99. package/src/LinearBareDisplay/configSchema.ts +15 -2
  100. package/src/LinearBareDisplay/model.ts +16 -0
  101. package/src/LinearBasicDisplay/configSchema.ts +19 -2
  102. package/src/LinearBasicDisplay/model.ts +63 -11
  103. package/src/LinearGenomeView/components/ImportForm.tsx +79 -63
  104. package/src/LinearGenomeView/components/LinearGenomeView.tsx +2 -26
  105. package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +21 -18
  106. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +204 -204
  107. package/src/LinearGenomeView/index.test.ts +33 -26
  108. package/src/LinearGenomeView/index.tsx +317 -60
  109. package/src/index.ts +6 -46
@@ -263,6 +263,7 @@ function SVGTracks({
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  // render LGV to SVG
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  export async function renderToSvg(model: LGV, opts: ExportSvgOptions) {
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  await when(() => model.initialized)
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+ const { Wrapper = ({ children }) => <>{children}</> } = opts
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  const { width, tracks, showCytobands } = model
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  const shift = 50
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  const offset =
@@ -282,24 +283,26 @@ export async function renderToSvg(model: LGV, opts: ExportSvgOptions) {
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  // the xlink namespace is used for rendering <image> tag
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  return renderToStaticMarkup(
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- <svg
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- width={width}
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- height={height}
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- xmlns="http://www.w3.org/2000/svg"
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- xmlnsXlink="http://www.w3.org/1999/xlink"
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- viewBox={[0, 0, width + shift * 2, height].toString()}
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- >
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- {/* background white */}
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- <rect width={width + shift * 2} height={height} fill="white" />
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+ <Wrapper>
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+ <svg
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+ width={width}
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+ height={height}
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+ xmlns="http://www.w3.org/2000/svg"
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+ xmlnsXlink="http://www.w3.org/1999/xlink"
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+ viewBox={[0, 0, width + shift * 2, height].toString()}
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+ >
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+ {/* background white */}
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+ <rect width={width + shift * 2} height={height} fill="white" />
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- <g stroke="none" transform={`translate(${shift} ${fontSize})`}>
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- <SVGHeader model={model} />
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- <SVGTracks
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- model={model}
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- displayResults={displayResults}
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- offset={offset}
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- />
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- </g>
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- </svg>,
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+ <g stroke="none" transform={`translate(${shift} ${fontSize})`}>
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+ <SVGHeader model={model} />
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+ <SVGTracks
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+ model={model}
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+ displayResults={displayResults}
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+ offset={offset}
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+ />
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+ </g>
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+ </svg>
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+ </Wrapper>,
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  )
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  }