npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.1.3 → 2.1.5 - Mend

@jbrowse/plugin-linear-genome-view 2.1.3 → 2.1.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (92) hide show

package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"SequenceSearchDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SequenceSearchDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,OAAO,EACP,SAAS,EACT,gBAAgB,EAChB,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAA;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAE/C,QAAQ;AACR,OAAO,SAAS,MAAM,2BAA2B,CAAA;~~AAKjD~~,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IACD,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtC,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAE5D,IAAI,KAAK,CAAA;IAET,IAAI;QACF,IAAI,MAAM,CAAC,KAAK,CAAC,CAAA;KAClB;IAAC,OAAO,CAAC,EAAE;QACV,KAAK,GAAG,CAAC,CAAA;KACV;IAED,OAAO,CACL,oBAAC,MAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC7C,oBAAC,WAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,IAAI,EAAC,OAAO;gBAEZ,oBAAC,SAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,oBAAC,OAAO,OAAG;QAEX,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC7C,oBAAC,UAAU,0KAIE;YACb,oBAAC,SAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EACvC,UAAU,EAAC,yBAAyB,GACpC;YACF,oBAAC,SAAS;gBACR,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GAC3D,EAEJ,KAAK,EAAC,kBAAkB,GACxB,CACQ;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,IAAE,GAAG,KAAK,EAAE,CAAc,CAAC,CAAC,CAAC,IAAI,CACrD;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;;oBACZ,IAAI,KAAK,EAAE;wBACT,MAAM,OAAO,GAAG,mBAAmB,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,CAAA;wBAChD,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;wBACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;wBACnC,MAAM,YAAY,GAAG,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;wBAC3C,OAAO,CAAC,YAAY,CAAC;4BACnB,OAAO;4BACP,IAAI,EAAE,mBAAmB,KAAK,EAAE;4BAChC,aAAa,EAAE,CAAC,YAAY,CAAC;4BAC7B,IAAI,EAAE,cAAc;4BACpB,OAAO,EAAE;gCACP,IAAI,EAAE,uBAAuB;gCAC7B,MAAM,EAAE,KAAK;gCACb,aAAa;gCACb,aAAa;gCACb,eAAe;gCACf,eAAe,EAAE,WAAW,CAC1B,MAAA,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,0CAAE,aAAa,CAAC,QAAQ,CACtD,OAAO,CACX;6BACF;yBACF,CAAC,CAAA;wBACF,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;qBAC3B;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,aAGR;YAET,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,YAGV,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}
1	+ {"version":3,"file":"SequenceSearchDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SequenceSearchDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,MAAM,EACN,QAAQ,EACR,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,OAAO,EACP,SAAS,EACT,gBAAgB,EAChB,UAAU,EACV,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAA;AAC7C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAE/C,QAAQ;AACR,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAEjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IACD,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtC,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAE5D,IAAI,KAAK,CAAA;IAET,IAAI;QACF,IAAI,MAAM,CAAC,KAAK,CAAC,CAAA;KAClB;IAAC,OAAO,CAAC,EAAE;QACV,KAAK,GAAG,CAAC,CAAA;KACV;IAED,OAAO,CACL,oBAAC,MAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW;QAC7C,oBAAC,WAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,IAAI,EAAC,OAAO;gBAEZ,oBAAC,SAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,oBAAC,OAAO,OAAG;QAEX,oBAAC,aAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC7C,oBAAC,UAAU,0KAIE;YACb,oBAAC,SAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EACvC,UAAU,EAAC,yBAAyB,GACpC;YACF,oBAAC,SAAS;gBACR,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,oBAAC,gBAAgB,IACf,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GAC3D,EAEJ,KAAK,EAAC,kBAAkB,GACxB,CACQ;YACX,KAAK,CAAC,CAAC,CAAC,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,IAAE,GAAG,KAAK,EAAE,CAAc,CAAC,CAAC,CAAC,IAAI,CACrD;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;;oBACZ,IAAI,KAAK,EAAE;wBACT,MAAM,OAAO,GAAG,mBAAmB,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,CAAA;wBAChD,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;wBACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;wBACnC,MAAM,YAAY,GAAG,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;wBAC3C,OAAO,CAAC,YAAY,CAAC;4BACnB,OAAO;4BACP,IAAI,EAAE,mBAAmB,KAAK,EAAE;4BAChC,aAAa,EAAE,CAAC,YAAY,CAAC;4BAC7B,IAAI,EAAE,cAAc;4BACpB,OAAO,EAAE;gCACP,IAAI,EAAE,uBAAuB;gCAC7B,MAAM,EAAE,KAAK;gCACb,aAAa;gCACb,aAAa;gCACb,eAAe;gCACf,eAAe,EAAE,WAAW,CAC1B,MAAA,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,0CAAE,aAAa,CAAC,QAAQ,CACtD,OAAO,CACX;6BACF;yBACF,CAAC,CAAA;wBACF,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;qBAC3B;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,aAGR;YAET,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,YAGV,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}

package/esm/LinearGenomeView/components/TrackLabel.js CHANGED Viewed

@@ -41,12 +41,11 @@ const useStyles = makeStyles()(theme => ({
 }));
 function getTrackName(track, session) {
     const trackName = getConf(track, 'name');
-    if (getConf(track, 'type') === 'ReferenceSequenceTrack') {
+    if (!trackName && getConf(track, 'type') === 'ReferenceSequenceTrack') {
         const asm = session.assemblies.find(a => a.sequence === track.configuration);
-        return (trackName ||
-            (asm
-                ? `Reference Sequence (${readConfObject(asm, 'displayName') || readConfObject(asm, 'name')})`
-                : 'Reference Sequence'));
+        return asm
+            ? `Reference Sequence (${readConfObject(asm, 'displayName') || readConfObject(asm, 'name')})`
+            : 'Reference Sequence';
     }
     return trackName;
 }

package/esm/LinearGenomeView/components/TrackLabel.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAEL,OAAO,EACP,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAElE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAIjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,SAAS,YAAY,CACnB,KAAqB,EACrB,OAAgD;IAEhD,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,IAAI,CAAC,SAAS,IAAI,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACrE,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,aAAa,CAAC,CAAA;QAC5E,OAAO,GAAG;YACR,CAAC,CAAC,uBACE,cAAc,CAAC,GAAG,EAAE,aAAa,CAAC,IAAI,cAAc,CAAC,GAAG,EAAE,MAAM,CAClE,GAAG;YACL,CAAC,CAAC,oBAAoB,CAAA;KACzB;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AACD,MAAM,UAAU,GAAG,KAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;IAE9C,MAAM,UAAU,GAAG,aAAa,CAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,WAAW,GAAG,CAAC,KAAuC,EAAE,EAAE;QAC9D,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;QAClC,IAAI,MAAM,CAAC,UAAU,EAAE;YACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;YAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;YAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;SAClC;IACH,CAAC,CAAA;IAED,MAAM,KAAK,GAAG;QACZ,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,KAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,8BACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,oBAAC,QAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,oBAAC,SAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QACb,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,CACC;QACb,oBAAC,UAAU,OACL,WAAW,CAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,oBAAC,YAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,oBAAC,aAAa,OACR,WAAW,CAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}

package/esm/LinearGenomeView/components/TracksContainer.d.ts CHANGED Viewed

@@ -1,7 +1,6 @@
 import React from 'react';
-import { Instance } from 'mobx-state-tree';
-import { LinearGenomeViewStateModel } from '..';
-declare type LGV = Instance<LinearGenomeViewStateModel>;
+import { LinearGenomeViewModel } from '..';
+declare type LGV = LinearGenomeViewModel;
 declare function TracksContainer({ children, model, }: {
     children: React.ReactNode;
     model: LGV;

package/esm/LinearGenomeView/components/TracksContainer.js CHANGED Viewed

@@ -2,6 +2,7 @@ import React, { useEffect, useRef, useState } from 'react';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import normalizeWheel from 'normalize-wheel';
+// locals
 import { SCALE_BAR_HEIGHT } from '..';
 import RubberBand from './RubberBand';
 import ScaleBar from './ScaleBar';

package/esm/LinearGenomeView/components/TracksContainer.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/index.d.ts CHANGED Viewed

@@ -1,3 +1,4 @@
+import React from 'react';
 import { Region } from '@jbrowse/core/util/types';
 import { MenuItem } from '@jbrowse/core/ui';
 import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
@@ -7,6 +8,8 @@ import PluginManager from '@jbrowse/core/PluginManager';
 import { renderToSvg } from './components/LinearGenomeViewSvg';
 import RefNameAutocomplete from './components/RefNameAutocomplete';
 import SearchBox from './components/SearchBox';
+import ZoomControls from './components/ZoomControls';
+import LinearGenomeView from './components/LinearGenomeView';
 export interface BpOffset {
     refName?: string;
     index: number;
@@ -91,6 +94,8 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     readonly interRegionPaddingWidth: number;
     readonly assemblyNames: string[];
 } & {
+    MiniControlsComponent(): React.FC<any>;
+    HeaderComponent(): React.FC<any>;
     readonly assemblyErrors: string;
     readonly assembliesInitialized: boolean;
     readonly initialized: boolean;
@@ -171,6 +176,8 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     showAllRegionsInAssembly(assemblyName?: string): void;
     setDraggingTrackId(idx?: string): void;
     setScaleFactor(factor: number): void;
+    clearView(): void;
+    exportSvg(opts?: ExportSvgOptions): Promise<void>;
 } & {
     slide: (viewWidths: number) => void;
 } & {
@@ -201,11 +208,9 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     readonly visibleLocStrings: string;
     readonly coarseVisibleLocStrings: string;
 } & {
-    clearView(): void;
     setCoarseDynamicBlocks(blocks: BlockSet): void;
     afterAttach(): void;
 } & {
-    exportSvg(opts?: ExportSvgOptions): Promise<void>;
     /**
      * offset is the base-pair-offset in the displayed region, index is the index of the
      * displayed region in the linear genome view
@@ -269,7 +274,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         reversed: boolean;
     } | undefined;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export { renderToSvg, RefNameAutocomplete, SearchBox };
+export { renderToSvg, RefNameAutocomplete, SearchBox, ZoomControls, LinearGenomeView, };
 export declare type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;
 export declare type LinearGenomeViewModel = Instance<LinearGenomeViewStateModel>;
 export { default as ReactComponent } from './components/LinearGenomeView';

package/esm/LinearGenomeView/index.js CHANGED Viewed

@@ -3,7 +3,7 @@ import { getConf } from '@jbrowse/core/configuration';
 import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes/models';
 import { ElementId, Region as MUIRegion } from '@jbrowse/core/util/types/mst';
 import { ReturnToImportFormDialog } from '@jbrowse/core/ui';
-import { assembleLocString, clamp, findLastIndex, getContainingView, getSession, isViewContainer, isSessionModelWithWidgets, measureText, parseLocString, springAnimate, } from '@jbrowse/core/util';
+import { assembleLocString, clamp, findLastIndex, getContainingView, getSession, isViewContainer, isSessionModelWithWidgets, measureText, parseLocString, springAnimate, isSessionWithAddTracks, } from '@jbrowse/core/util';
 import calculateDynamicBlocks from '@jbrowse/core/util/calculateDynamicBlocks';
 import calculateStaticBlocks from '@jbrowse/core/util/calculateStaticBlocks';
 import { getParentRenderProps } from '@jbrowse/core/util/tracks';
@@ -27,6 +27,10 @@ import { renderToSvg } from './components/LinearGenomeViewSvg';
 import RefNameAutocomplete from './components/RefNameAutocomplete';
 import SearchBox from './components/SearchBox';
 import ExportSvgDlg from './components/ExportSvgDialog';
+import MiniControls from './components/MiniControls';
+import Header from './components/Header';
+import ZoomControls from './components/ZoomControls';
+import LinearGenomeView from './components/LinearGenomeView';
 const SequenceSearchDialog = lazy(() => import('./components/SequenceSearchDialog'));
 function calculateVisibleLocStrings(contentBlocks) {
     if (!contentBlocks.length) {
@@ -115,6 +119,14 @@ export function stateModelFactory(pluginManager) {
         },
     }))
         .views(self => ({
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        MiniControlsComponent() {
+            return MiniControls;
+        },
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        HeaderComponent() {
+            return Header;
+        },
         get assemblyErrors() {
             const { assemblyManager } = getSession(self);
             const { assemblyNames } = self;
@@ -486,6 +498,22 @@ export function stateModelFactory(pluginManager) {
         setScaleFactor(factor) {
             self.scaleFactor = factor;
         },
+        // this "clears the view" and makes the view return to the import form
+        clearView() {
+            this.setDisplayedRegions([]);
+            self.tracks.clear();
+            // it is necessary to run these after setting displayed regions empty
+            // or else model.offsetPx gets set to Infinity and breaks
+            // mobx-state-tree snapshot
+            self.scrollTo(0);
+            self.zoomTo(10);
+        },
+        async exportSvg(opts = {}) {
+            // eslint-disable-next-line @typescript-eslint/no-explicit-any
+            const html = await renderToSvg(self, opts);
+            const blob = new Blob([html], { type: 'image/svg+xml' });
+            saveAs(blob, opts.filename || 'image.svg');
+        },
     }))
         .actions(self => {
         let cancelLastAnimation = () => { };
@@ -540,6 +568,7 @@ export function stateModelFactory(pluginManager) {
         .views(self => ({
         menuItems() {
             const { canShowCytobands, showCytobands } = self;
+            const session = getSession(self);
             const menuItems = [
                 {
                     label: 'Return to import form',
@@ -551,15 +580,19 @@ export function stateModelFactory(pluginManager) {
                     },
                     icon: FolderOpenIcon,
                 },
-                {
-                    label: 'Sequence search',
-                    onClick: () => {
-                        getSession(self).queueDialog(handleClose => [
-                            SequenceSearchDialog,
-                            { model: self, handleClose },
-                        ]);
-                    },
-                },
+                ...(isSessionWithAddTracks(session)
+                    ? [
+                        {
+                            label: 'Sequence search',
+                            onClick: () => {
+                                getSession(self).queueDialog(handleClose => [
+                                    SequenceSearchDialog,
+                                    { model: self, handleClose },
+                                ]);
+                            },
+                        },
+                    ]
+                    : []),
                 {
                     label: 'Export SVG',
                     icon: PhotoCameraIcon,
@@ -705,16 +738,6 @@ export function stateModelFactory(pluginManager) {
         };
     })
         .actions(self => ({
-        // this "clears the view" and makes the view return to the import form
-        clearView() {
-            self.setDisplayedRegions([]);
-            self.tracks.clear();
-            // it is necessary to run these after setting displayed regions empty
-            // or else model.offsetPx gets set to Infinity and breaks
-            // mobx-state-tree snapshot
-            self.scrollTo(0);
-            self.zoomTo(10);
-        },
         setCoarseDynamicBlocks(blocks) {
             self.coarseDynamicBlocks = blocks.contentBlocks;
             self.coarseTotalBp = blocks.totalBp;
@@ -728,12 +751,6 @@ export function stateModelFactory(pluginManager) {
         },
     }))
         .actions(self => ({
-        async exportSvg(opts = {}) {
-            // eslint-disable-next-line @typescript-eslint/no-explicit-any
-            const html = await renderToSvg(self, opts);
-            const blob = new Blob([html], { type: 'image/svg+xml' });
-            saveAs(blob, opts.filename || 'image.svg');
-        },
         /**
          * offset is the base-pair-offset in the displayed region, index is the index of the
          * displayed region in the linear genome view
@@ -980,6 +997,6 @@ export function stateModelFactory(pluginManager) {
         },
     }));
 }
-export { renderToSvg, RefNameAutocomplete, SearchBox };
+export { renderToSvg, RefNameAutocomplete, SearchBox, ZoomControls, LinearGenomeView, };
 export { default as ReactComponent } from './components/LinearGenomeView';
 //# sourceMappingURL=index.js.map

package/esm/LinearGenomeView/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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