npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.1.3 → 2.1.5 - Mend

@jbrowse/plugin-linear-genome-view 2.1.3 → 2.1.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (92) hide show

package/dist/index.js CHANGED Viewed

@@ -58,6 +58,9 @@ class LinearGenomeViewPlugin extends Plugin_1.default {
             BaseLinearDisplayComponent: BaseLinearDisplay_1.BaseLinearDisplayComponent,
             BaseLinearDisplay: BaseLinearDisplay_1.BaseLinearDisplay,
             baseLinearDisplayConfigSchema: BaseLinearDisplay_1.baseLinearDisplayConfigSchema,
+            SearchBox: LinearGenomeView_1.SearchBox,
+            ZoomControls: LinearGenomeView_1.ZoomControls,
+            LinearGenomeView: LinearGenomeView_1.LinearGenomeView,
         };
     }
     install(pluginManager) {

package/dist/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/BaseLinearDisplay/components/BlockMsg.d.ts ADDED Viewed

@@ -0,0 +1,9 @@
+import React from 'react';
+import { AlertColor } from '@mui/material';
+export default function BlockMsg({ message, severity, buttonText, icon, action, }: {
+    message: string;
+    severity?: AlertColor;
+    buttonText?: string;
+    icon?: React.ReactNode;
+    action?: () => void;
+}): JSX.Element;

package/esm/BaseLinearDisplay/components/BlockMsg.js ADDED Viewed

@@ -0,0 +1,16 @@
+import React from 'react';
+import { Tooltip, Button, Alert } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()({
+    ellipses: {
+        textOverflow: 'ellipsis',
+        overflow: 'hidden',
+    },
+});
+export default function BlockMsg({ message, severity, buttonText, icon, action, }) {
+    const { classes } = useStyles();
+    const button = action ? (React.createElement(Button, { "data-testid": "reload_button", onClick: action, startIcon: icon }, buttonText)) : null;
+    return (React.createElement(Tooltip, { title: message },
+        React.createElement(Alert, { severity: severity, action: button, classes: { message: classes.ellipses } }, message)));
+}
+//# sourceMappingURL=BlockMsg.js.map

package/esm/BaseLinearDisplay/components/BlockMsg.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"BlockMsg.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/BlockMsg.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,OAAO,EAAE,MAAM,EAAE,KAAK,EAAc,MAAM,eAAe,CAAA;AAClE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,QAAQ,EAAE;QACR,YAAY,EAAE,UAAU;QACxB,QAAQ,EAAE,QAAQ;KACnB;CACF,CAAC,CAAA;AAEF,MAAM,CAAC,OAAO,UAAU,QAAQ,CAAC,EAC/B,OAAO,EACP,QAAQ,EACR,UAAU,EACV,IAAI,EACJ,MAAM,GAOP;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,CACtB,oBAAC,MAAM,mBAAa,eAAe,EAAC,OAAO,EAAE,MAAM,EAAE,SAAS,EAAE,IAAI,IACjE,UAAU,CACJ,CACV,CAAC,CAAC,CAAC,IAAI,CAAA;IACR,OAAO,CACL,oBAAC,OAAO,IAAC,KAAK,EAAE,OAAO;QACrB,oBAAC,KAAK,IACJ,QAAQ,EAAE,QAAQ,EAClB,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,EAAE,OAAO,EAAE,OAAO,CAAC,QAAQ,EAAE,IAErC,OAAO,CACF,CACA,CACX,CAAA;AACH,CAAC"}

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js CHANGED Viewed

@@ -1,10 +1,10 @@
 import React, { useEffect, useState } from 'react';
-import { Typography, Button } from '@mui/material';
+import { Typography } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getParent } from 'mobx-state-tree';
-import { getParentRenderProps } from '@jbrowse/core/util/tracks';
 import RefreshIcon from '@mui/icons-material/Refresh';
+import BlockMsg from './BlockMsg';
 const useStyles = makeStyles()(theme => ({
     loading: {
         paddingLeft: '0.6em',
@@ -15,26 +15,6 @@ const useStyles = makeStyles()(theme => ({
         pointerEvents: 'none',
         textAlign: 'center',
     },
-    blockMessage: {
-        width: '100%',
-        background: theme.palette.action.disabledBackground,
-        padding: theme.spacing(2),
-        pointerEvents: 'none',
-        textAlign: 'center',
-    },
-    blockError: {
-        padding: theme.spacing(2),
-        width: '100%',
-        whiteSpace: 'normal',
-        color: theme.palette.error.main,
-        overflowY: 'auto',
-    },
-    blockReactNodeMessage: {
-        width: '100%',
-        background: theme.palette.action.disabledBackground,
-        padding: theme.spacing(2),
-        textAlign: 'center',
-    },
     dots: {
         '&::after': {
             display: 'inline-block',
@@ -56,11 +36,6 @@ const useStyles = makeStyles()(theme => ({
         },
     },
 }));
-function Repeater({ children }) {
-    return (React.createElement("div", { style: { display: 'flex' } },
-        children,
-        children));
-}
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 const LoadingMessage = observer(({ model }) => {
     // only show the loading message after 300ms to prevent excessive flickering
@@ -85,28 +60,16 @@ const LoadingMessage = observer(({ model }) => {
     return (React.createElement(React.Fragment, null, shown ? (React.createElement("div", { className: classes.loading },
         React.createElement(Typography, { className: classes.dots, variant: "body2" }, status ? `${status}` : 'Loading'))) : null));
 });
-function BlockMessage({ messageContent, }) {
-    const { classes } = useStyles();
-    return React.isValidElement(messageContent) ? (React.createElement("div", { className: classes.blockReactNodeMessage }, messageContent)) : (React.createElement(Typography, { variant: "body2", className: classes.blockMessage }, messageContent));
-}
-function BlockError({ error, reload, displayHeight, }) {
-    const { classes } = useStyles();
-    return (React.createElement("div", { className: classes.blockError, style: { height: displayHeight } },
-        reload ? (React.createElement(Button, { "data-testid": "reload_button", onClick: reload, startIcon: React.createElement(RefreshIcon, null) }, "Reload")) : null,
-        React.createElement(Typography, { color: "error", variant: "body2", display: "inline" }, `${error}`)));
-}
 const ServerSideRenderedBlockContent = observer(({ model, }) => {
     if (model.error) {
-        return (React.createElement(Repeater, null,
-            React.createElement(BlockError, { error: model.error, reload: model.reload, displayHeight: getParentRenderProps(model).displayModel.height })));
+        return (React.createElement(BlockMsg, { message: `${model.error}`, severity: "error", buttonText: "reload", icon: React.createElement(RefreshIcon, null), action: model.reload }));
     }
     if (model.message) {
-        return (React.createElement(Repeater, null,
-            React.createElement(BlockMessage, { messageContent: model.message })));
+        // the message can be a fully rendered react component, e.g. the region too large message
+        return React.isValidElement(model.message) ? (model.message) : (React.createElement(BlockMsg, { message: `${model.message}`, severity: "info" }));
     }
     if (!model.filled) {
-        return (React.createElement(Repeater, null,
-            React.createElement(LoadingMessage, { model: model })));
+        return React.createElement(LoadingMessage, { model: model });
     }
     return model.reactElement;
 });

package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts CHANGED Viewed

@@ -116,10 +116,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): MenuItem[];
     readonly viewMenuActions: MenuItem[];
-    regionCannotBeRendered(): undefined; /**
-     * how many milliseconds to wait for the display to
-     * "settle" before re-rendering a block
-     */
+    regionCannotBeRendered(): undefined;
 } & {
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
@@ -205,7 +202,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      *  string of text describes why it cannot be rendered
      *  react node allows user to force load at current setting
      */
-    regionCannotBeRendered(_region: Region): JSX.Element | undefined;
+    regionCannotBeRendered(_region: Region): JSX.Element | null;
     trackMenuItems(): MenuItem[];
     contextMenuItems(): {
         label: string;

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js CHANGED Viewed

@@ -1,6 +1,6 @@
 /* eslint-disable @typescript-eslint/no-explicit-any */
 import React from 'react';
-import { Button, Typography } from '@mui/material';
+import TooLargeMessage from './TooLargeMessage';
 import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models';
 import { getConf } from '@jbrowse/core/configuration';
 import { isAbortException, getContainingView, getContainingTrack, getSession, getViewParams, isSelectionContainer, isSessionModelWithWidgets, } from '@jbrowse/core/util';
@@ -403,25 +403,8 @@ export const BaseLinearDisplay = types
      *  react node allows user to force load at current setting
      */
     regionCannotBeRendered(_region) {
-        const { regionTooLarge, regionTooLargeReason } = self;
-        if (regionTooLarge) {
-            return (React.createElement(React.Fragment, null,
-                React.createElement(Typography, { component: "span", variant: "body2" },
-                    regionTooLargeReason ? regionTooLargeReason + '. ' : '',
-                    "Zoom in to see features or",
-                    ' '),
-                React.createElement(Button, { "data-testid": "force_reload_button", onClick: () => {
-                        if (!self.estimatedRegionStats) {
-                            console.error('No global stats?');
-                        }
-                        else {
-                            self.updateStatsLimit(self.estimatedRegionStats);
-                            self.reload();
-                        }
-                    }, variant: "outlined" }, "Force Load"),
-                React.createElement(Typography, { component: "span", variant: "body2" }, "(force load may be slow)")));
-        }
-        return undefined;
+        const { regionTooLarge } = self;
+        return regionTooLarge ? React.createElement(TooLargeMessage, { model: self }) : null;
     },
     trackMenuItems() {
         return [];

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/BaseLinearDisplay/models/TooLargeMessage.d.ts ADDED Viewed

@@ -0,0 +1,11 @@
+/// <reference types="react" />
+import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
+declare function TooLargeMessage({ model, }: {
+    model: {
+        regionTooLargeReason: string;
+        estimatedRegionStats?: Stats;
+        updateStatsLimit: (s: Stats) => void;
+        reload: () => void;
+    };
+}): JSX.Element;
+export default TooLargeMessage;

package/esm/BaseLinearDisplay/models/TooLargeMessage.js ADDED Viewed

@@ -0,0 +1,17 @@
+import React from 'react';
+import BlockMsg from '../components/BlockMsg';
+function TooLargeMessage({ model, }) {
+    const { regionTooLargeReason } = model;
+    return (React.createElement(BlockMsg, { severity: "warning", action: () => {
+            if (!model.estimatedRegionStats) {
+                console.error('No global stats?');
+            }
+            else {
+                model.updateStatsLimit(model.estimatedRegionStats);
+                model.reload();
+            }
+        }, buttonText: "Force load", message: `${regionTooLargeReason ? regionTooLargeReason + '. ' : ''}
+      Zoom in to see features or force load (may be slow).` }));
+}
+export default TooLargeMessage;
+//# sourceMappingURL=TooLargeMessage.js.map

package/esm/BaseLinearDisplay/models/TooLargeMessage.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/TooLargeMessage.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,QAAQ,MAAM,wBAAwB,CAAA;AAG7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,oBAAC,QAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,IAAI,CAAC,KAAK,CAAC,oBAAoB,EAAE;gBAC/B,OAAO,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAA;aAClC;iBAAM;gBACL,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,oBAAoB,CAAC,CAAA;gBAClD,KAAK,CAAC,MAAM,EAAE,CAAA;aACf;QACH,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE,GAAG,oBAAoB,CAAC,CAAC,CAAC,oBAAoB,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE;2DACd,GACrD,CACH,CAAA;AACH,CAAC;AAED,eAAe,eAAe,CAAA"}

package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts CHANGED Viewed

@@ -51,7 +51,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
 export default blockState;
 export declare type BlockStateModel = typeof blockState;
 export declare type BlockModel = Instance<BlockStateModel>;
-export declare function renderBlockData(self: Instance<BlockStateModel>, optDisplay?: AbstractDisplayModel): {
+export declare function renderBlockData(self: BlockModel, optDisplay?: AbstractDisplayModel): {
     rendererType: any;
     rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
     renderProps: any;

package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"serverSideRenderedBlock.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/serverSideRenderedBlock.ts"],"names":[],"mappings":"AAEA,OAAO,EAAE,KAAK,EAAE,SAAS,EAAE,OAAO,EAAE,IAAI,EAAY,MAAM,iBAAiB,CAAA;AAC3E,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,iBAAiB,EACjB,UAAU,EACV,oBAAoB,EACpB,iBAAiB,EACjB,aAAa,EACb,qBAAqB,GAEtB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,MAAM,EAAE,MAAM,8BAA8B,CAAA;AACrD,OAAO,EAEL,gBAAgB,GACjB,MAAM,0BAA0B,CAAA;AAEjC,OAAO,EACL,qBAAqB,EACrB,eAAe,GAChB,MAAM,2BAA2B,CAAA;AAElC,OAAO,8BAA8B,MAAM,8CAA8C,CAAA;AAEzF,oEAAoE;AACpE,MAAM,UAAU,GAAG,KAAK;KACrB,KAAK,CAAC,YAAY,EAAE;IACnB,GAAG,EAAE,KAAK,CAAC,MAAM;IACjB,MAAM,EAAE,MAAM;IACd,UAAU,EAAE,CAAC;IACb,0BAA0B,EAAE,KAAK;IACjC,2BAA2B,EAAE,KAAK;CACnC,CAAC;IACF,yFAAyF;KACxF,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;IACf,gBAAgB,EAAE,SAAwC;IAC1D,MAAM,EAAE,KAAK;IACb,YAAY,EAAE,SAA2C;IACzD,QAAQ,EAAE,SAA6C;IACvD,MAAM,EAAE,SAAgB;IACxB,MAAM,EAAE,EAAE;IACV,KAAK,EAAE,SAAoB;IAC3B,OAAO,EAAE,SAA+B;IACxC,gBAAgB,EAAE,KAAK;IACvB,cAAc,EAAE,8BAA8B;IAC9C,WAAW,EAAE,SAAgB;CAC9B,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE;IACd,IAAI,gBAA6C,CAAA;IACjD,OAAO;QACL,QAAQ;YACN,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA;QACvC,CAAC;QACD,WAAW;YACT,MAAM,OAAO,GAAG,oBAAoB,CAAC,IAAI,CAAC,CAAA;YAC1C,qBAAqB,CACnB,IAAW,EACX,eAAe,EACf,iBAAwB,EAAE,qCAAqC;YAC/D;gBACE,IAAI,EAAE,GAAG,OAAO,CAAC,EAAE,IAAI,iBAAiB,CAAC,IAAI,CAAC,MAAM,CAAC,YAAY;gBACjE,KAAK,EAAE,OAAO,CAAC,WAAW;gBAC1B,eAAe,EAAE,IAAI;aACtB,EACD,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,EAChB,IAAI,CAAC,QAAQ,CACd,CAAA;QACH,CAAC;QACD,SAAS,CAAC,OAAe;YACvB,IAAI,CAAC,MAAM,GAAG,OAAO,CAAA;QACvB,CAAC;QACD,UAAU,CAAC,eAAgC;YACzC,IAAI,gBAAgB,KAAK,SAAS,EAAE;gBAClC,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;oBACpC,gBAAgB,CAAC,KAAK,EAAE,CAAA;iBACzB;aACF;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,eAAe,CAAA;QACpC,CAAC;QACD,UAAU,CAAC,WAAmB;YAC5B,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,WAAW,CAAA;YAC1B,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,WAAW,CACT,KAQa;YAEb,IAAI,CAAC,KAAK,EAAE;gBACV,OAAM;aACP;YACD,MAAM,EACJ,YAAY,EACZ,QAAQ,EACR,MAAM,EACN,gBAAgB,EAChB,WAAW,GACZ,GAAG,KAAK,CAAA;YACT,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;YAChC,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;YACxB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;YACpB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,gBAAgB,CAAA;YACxC,IAAI,CAAC,WAAW,GAAG,WAAW,CAAA;YAC9B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,QAAQ,CAAC,KAAsB;YAC7B,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACpB,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,uCAAuC;YACvC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;YAClB,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;YAC5B,IAAI,gBAAgB,CAAC,KAAc,CAAC,EAAE;gBACpC,IAAI,CAAC,MAAM,EAAE,CAAA;aACd;QACH,CAAC;QACD,MAAM;YACJ,IAAI,CAAC,gBAAgB,GAAG,SAAS,CAAA;YACjC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,cAAc,GAAG,8BAA8B,CAAA;YACpD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,SAAS,CAAM,IAAI,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,CAAA;QAClC,CAAC;QACD,aAAa;YACX,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,MAAM,OAAO,GAAG,oBAAoB,CAAC,IAAI,CAAC,CAAA;YAC1C,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YACvC,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;YAChC,MAAM,EAAE,UAAU,EAAE,GAAG,eAAe,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAA;YAClD,gEAAgE;YAChE,IAAI,UAAU,EAAE;gBACd,YAAY;qBACT,qBAAqB,CACpB,UAAU,EACV,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CACvC;qBACA,KAAK,CAAC,CAAC,CAAQ,EAAE,EAAE;oBAClB,kEAAkE;oBAClE,OAAO,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC,CAAA;gBACjD,CAAC,CAAC,CAAA;aACL;QACH,CAAC;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEJ,eAAe,UAAU,CAAA;AAIzB,2EAA2E;AAC3E,mDAAmD;AACnD,MAAM,UAAU,eAAe,CAC7B,IAAgB,EAChB,UAAiC;IAEjC,IAAI;QACF,MAAM,OAAO,GAAG,UAAU,IAAK,oBAAoB,CAAC,IAAI,CAAS,CAAA;QACjE,MAAM,EAAE,eAAe,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,OAAO,CAAC,CAAA;QAC3D,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACnE,MAAM,aAAa,GAAG,qBAAqB,CAAC,WAAW,CAAC,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package/esm/LinearBareDisplay/model.d.ts CHANGED Viewed

@@ -167,7 +167,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     afterAttach(): void;
 } & {
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): {
         label: string;

package/esm/LinearBasicDisplay/model.d.ts CHANGED Viewed

@@ -173,7 +173,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
     afterAttach(): void;
 } & {
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
     trackMenuItems(): MenuItem[];
     contextMenuItems(): {
         label: string;

package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts CHANGED Viewed

@@ -1,6 +1,8 @@
 /// <reference types="react" />
-import { LinearGenomeViewModel as LGV } from '..';
+import { ExportSvgOptions } from '..';
 export default function ExportSvgDlg({ model, handleClose, }: {
-    model: LGV;
+    model: {
+        exportSvg(opts: ExportSvgOptions): void;
+    };
     handleClose: () => void;
 }): JSX.Element;

package/esm/LinearGenomeView/components/Header.d.ts CHANGED Viewed

@@ -3,5 +3,5 @@ import { LinearGenomeViewModel } from '..';
 declare type LGV = LinearGenomeViewModel;
 declare const LinearGenomeViewHeader: ({ model }: {
     model: LGV;
-}) => JSX.Element;
+}) => JSX.Element | null;
 export default LinearGenomeViewHeader;

package/esm/LinearGenomeView/components/Header.js CHANGED Viewed

@@ -74,8 +74,8 @@ const Controls = ({ model }) => {
         React.createElement("div", { className: classes.spacer })));
 };
 const LinearGenomeViewHeader = observer(({ model }) => {
-    return model.hideHeaderOverview ? (React.createElement(Controls, { model: model })) : (React.createElement(OverviewScaleBar, { model: model },
-        React.createElement(Controls, { model: model })));
+    return !model.hideHeader ? (model.hideHeaderOverview ? (React.createElement(Controls, { model: model })) : (React.createElement(OverviewScaleBar, { model: model },
+        React.createElement(Controls, { model: model })))) : null;
 });
 export default LinearGenomeViewHeader;
 //# sourceMappingURL=Header.js.map

package/esm/LinearGenomeView/components/Header.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/LinearGenomeView.js CHANGED Viewed

@@ -1,13 +1,13 @@
 import React from 'react';
 import { Button, Paper, Typography } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
+import { ErrorBoundary } from 'react-error-boundary';
 import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons';
+import { ErrorMessage } from '@jbrowse/core/ui';
 import { observer } from 'mobx-react';
-import Header from './Header';
 import TrackContainer from './TrackContainer';
 import TracksContainer from './TracksContainer';
 import ImportForm from './ImportForm';
-import MiniControls from './MiniControls';
 import GetSequenceDialog from './GetSequenceDialog';
 import SearchResultsDialog from './SearchResultsDialog';
 const useStyles = makeStyles()(theme => ({
@@ -38,7 +38,7 @@ const useStyles = makeStyles()(theme => ({
     },
 }));
 const LinearGenomeView = observer(({ model }) => {
-    const { tracks, error, hideHeader, initialized, hasDisplayedRegions } = model;
+    const { tracks, error, initialized, hasDisplayedRegions } = model;
     const { classes } = useStyles();
     if (!initialized && !error) {
         return (React.createElement(Typography, { className: classes.dots, variant: "h5" }, "Loading"));
@@ -46,18 +46,17 @@ const LinearGenomeView = observer(({ model }) => {
     if (!hasDisplayedRegions || error) {
         return React.createElement(ImportForm, { model: model });
     }
+    const MiniControlsComponent = model.MiniControlsComponent();
+    const HeaderComponent = model.HeaderComponent();
     return (React.createElement("div", { style: { position: 'relative' } },
         model.seqDialogDisplayed ? (React.createElement(GetSequenceDialog, { model: model, handleClose: () => model.setGetSequenceDialogOpen(false) })) : null,
         model.isSearchDialogDisplayed ? (React.createElement(SearchResultsDialog, { model: model, handleClose: () => model.setSearchResults(undefined, undefined) })) : null,
-        !hideHeader ? (React.createElement(Header, { model: model })) : (React.createElement("div", { style: {
-                position: 'absolute',
-                right: 0,
-                zIndex: 1001,
-            } },
-            React.createElement(MiniControls, { model: model }))),
+        React.createElement(HeaderComponent, { model: model }),
+        React.createElement(MiniControlsComponent, { model: model }),
         React.createElement(TracksContainer, { model: model }, !tracks.length ? (React.createElement(Paper, { variant: "outlined", className: classes.note }, !model.hideNoTracksActive ? (React.createElement(React.Fragment, null,
             React.createElement(Typography, null, "No tracks active."),
-            React.createElement(Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: React.createElement(TrackSelectorIcon, null) }, "Open track selector"))) : (React.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (React.createElement(TrackContainer, { key: track.id, model: model, track: track })))))));
+            React.createElement(Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: React.createElement(TrackSelectorIcon, null) }, "Open track selector"))) : (React.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (React.createElement(ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => React.createElement(ErrorMessage, { error: error }) },
+            React.createElement(TrackContainer, { model: model, track: track }))))))));
 });
 export default LinearGenomeView;
 //# sourceMappingURL=LinearGenomeView.js.map

package/esm/LinearGenomeView/components/LinearGenomeView.js.map CHANGED Viewed

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package/esm/LinearGenomeView/components/MiniControls.d.ts CHANGED Viewed

@@ -2,5 +2,5 @@
 import { LinearGenomeViewModel } from '..';
 declare const MiniControls: (props: {
     model: LinearGenomeViewModel;
-}) => JSX.Element;
+}) => JSX.Element | null;
 export default MiniControls;

package/esm/LinearGenomeView/components/MiniControls.js CHANGED Viewed

@@ -7,19 +7,20 @@ import ArrowDown from '@mui/icons-material/KeyboardArrowDown';
 import Menu from '@jbrowse/core/ui/Menu';
 const MiniControls = observer((props) => {
     const { model } = props;
-    const { bpPerPx, maxBpPerPx, minBpPerPx, scaleFactor } = model;
+    const { bpPerPx, maxBpPerPx, minBpPerPx, scaleFactor, hideHeader } = model;
     const [anchorEl, setAnchorEl] = useState();
-    return (React.createElement(Paper, { style: { background: '#aaa7' } },
-        React.createElement(IconButton, { color: "secondary", onClick: event => setAnchorEl(event.currentTarget) },
-            React.createElement(ArrowDown, { fontSize: "small" })),
-        React.createElement(IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary" },
-            React.createElement(ZoomOut, { fontSize: "small" })),
-        React.createElement(IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary" },
-            React.createElement(ZoomIn, { fontSize: "small" })),
-        React.createElement(Menu, { anchorEl: anchorEl, open: Boolean(anchorEl), onMenuItemClick: (_, callback) => {
-                callback();
-                setAnchorEl(undefined);
-            }, onClose: () => setAnchorEl(undefined), menuItems: model.menuItems() })));
+    return hideHeader ? (React.createElement("div", { style: { position: 'absolute', right: '0px', zIndex: '1001' } },
+        React.createElement(Paper, { style: { background: '#aaa7' } },
+            React.createElement(IconButton, { color: "secondary", onClick: event => setAnchorEl(event.currentTarget) },
+                React.createElement(ArrowDown, { fontSize: "small" })),
+            React.createElement(IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary" },
+                React.createElement(ZoomOut, { fontSize: "small" })),
+            React.createElement(IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary" },
+                React.createElement(ZoomIn, { fontSize: "small" })),
+            React.createElement(Menu, { anchorEl: anchorEl, open: Boolean(anchorEl), onMenuItemClick: (_, callback) => {
+                    callback();
+                    setAnchorEl(undefined);
+                }, onClose: () => setAnchorEl(undefined), menuItems: model.menuItems() })))) : null;
 });
 export default MiniControls;
 //# sourceMappingURL=MiniControls.js.map

package/esm/LinearGenomeView/components/MiniControls.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts CHANGED Viewed

@@ -1,7 +1,9 @@
 /// <reference types="react" />
-import { LinearGenomeViewModel } from '..';
 declare function SequenceDialog({ model, handleClose, }: {
-    model: LinearGenomeViewModel;
+    model: {
+        assemblyNames: string[];
+        toggleTrack(trackId: string): void;
+    };
     handleClose: () => void;
 }): JSX.Element;
 declare const _default: typeof SequenceDialog;