@jbrowse/plugin-linear-genome-view 2.1.3 → 2.1.5

package/dist/BaseLinearDisplay/components/BlockMsg.d.ts

@@ -0,0 +1,9 @@
+import React from 'react';
+import { AlertColor } from '@mui/material';
+export default function BlockMsg({ message, severity, buttonText, icon, action, }: {
+    message: string;
+    severity?: AlertColor;
+    buttonText?: string;
+    icon?: React.ReactNode;
+    action?: () => void;
+}): JSX.Element;

package/dist/BaseLinearDisplay/components/BlockMsg.js

@@ -0,0 +1,22 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const useStyles = (0, mui_1.makeStyles)()({
+    ellipses: {
+        textOverflow: 'ellipsis',
+        overflow: 'hidden',
+    },
+});
+function BlockMsg({ message, severity, buttonText, icon, action, }) {
+    const { classes } = useStyles();
+    const button = action ? (react_1.default.createElement(material_1.Button, { "data-testid": "reload_button", onClick: action, startIcon: icon }, buttonText)) : null;
+    return (react_1.default.createElement(material_1.Tooltip, { title: message },
+        react_1.default.createElement(material_1.Alert, { severity: severity, action: button, classes: { message: classes.ellipses } }, message)));
+}
+exports.default = BlockMsg;
+//# sourceMappingURL=BlockMsg.js.map

package/dist/BaseLinearDisplay/components/BlockMsg.js.map

@@ -0,0 +1 @@
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package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js

@@ -31,8 +31,8 @@ const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
 const mobx_react_1 = require("mobx-react");
 const mobx_state_tree_1 = require("mobx-state-tree");
-const tracks_1 = require("@jbrowse/core/util/tracks");
 const Refresh_1 = __importDefault(require("@mui/icons-material/Refresh"));
+const BlockMsg_1 = __importDefault(require("./BlockMsg"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     loading: {
         paddingLeft: '0.6em',
@@ -43,26 +43,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         pointerEvents: 'none',
         textAlign: 'center',
     },
-    blockMessage: {
-        width: '100%',
-        background: theme.palette.action.disabledBackground,
-        padding: theme.spacing(2),
-        pointerEvents: 'none',
-        textAlign: 'center',
-    },
-    blockError: {
-        padding: theme.spacing(2),
-        width: '100%',
-        whiteSpace: 'normal',
-        color: theme.palette.error.main,
-        overflowY: 'auto',
-    },
-    blockReactNodeMessage: {
-        width: '100%',
-        background: theme.palette.action.disabledBackground,
-        padding: theme.spacing(2),
-        textAlign: 'center',
-    },
     dots: {
         '&::after': {
             display: 'inline-block',
@@ -84,11 +64,6 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         },
     },
 }));
-function Repeater({ children }) {
-    return (react_1.default.createElement("div", { style: { display: 'flex' } },
-        children,
-        children));
-}
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 const LoadingMessage = (0, mobx_react_1.observer)(({ model }) => {
     // only show the loading message after 300ms to prevent excessive flickering
@@ -113,28 +88,16 @@ const LoadingMessage = (0, mobx_react_1.observer)(({ model }) => {
     return (react_1.default.createElement(react_1.default.Fragment, null, shown ? (react_1.default.createElement("div", { className: classes.loading },
         react_1.default.createElement(material_1.Typography, { className: classes.dots, variant: "body2" }, status ? `${status}` : 'Loading'))) : null));
 });
-function BlockMessage({ messageContent, }) {
-    const { classes } = useStyles();
-    return react_1.default.isValidElement(messageContent) ? (react_1.default.createElement("div", { className: classes.blockReactNodeMessage }, messageContent)) : (react_1.default.createElement(material_1.Typography, { variant: "body2", className: classes.blockMessage }, messageContent));
-}
-function BlockError({ error, reload, displayHeight, }) {
-    const { classes } = useStyles();
-    return (react_1.default.createElement("div", { className: classes.blockError, style: { height: displayHeight } },
-        reload ? (react_1.default.createElement(material_1.Button, { "data-testid": "reload_button", onClick: reload, startIcon: react_1.default.createElement(Refresh_1.default, null) }, "Reload")) : null,
-        react_1.default.createElement(material_1.Typography, { color: "error", variant: "body2", display: "inline" }, `${error}`)));
-}
 const ServerSideRenderedBlockContent = (0, mobx_react_1.observer)(({ model, }) => {
     if (model.error) {
-        return (react_1.default.createElement(Repeater, null,
-            react_1.default.createElement(BlockError, { error: model.error, reload: model.reload, displayHeight: (0, tracks_1.getParentRenderProps)(model).displayModel.height })));
+        return (react_1.default.createElement(BlockMsg_1.default, { message: `${model.error}`, severity: "error", buttonText: "reload", icon: react_1.default.createElement(Refresh_1.default, null), action: model.reload }));
     }
     if (model.message) {
-        return (react_1.default.createElement(Repeater, null,
-            react_1.default.createElement(BlockMessage, { messageContent: model.message })));
+        // the message can be a fully rendered react component, e.g. the region too large message
+        return react_1.default.isValidElement(model.message) ? (model.message) : (react_1.default.createElement(BlockMsg_1.default, { message: `${model.message}`, severity: "info" }));
     }
     if (!model.filled) {
-        return (react_1.default.createElement(Repeater, null,
-            react_1.default.createElement(LoadingMessage, { model: model })));
+        return react_1.default.createElement(LoadingMessage, { model: model });
     }
     return model.reactElement;
 });

package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ServerSideRenderedBlockContent.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAkD;AAClD,4CAA0C;AAC1C,uCAA0C;AAC1C,2CAAqC;AACrC,qDAA2C;AAC3C,0EAAqD;AAErD,0DAAiC;AAEjC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,WAAW,EAAE,OAAO;QACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;QACxD,eAAe,EACb,qHAAqH;QACvH,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,aAAa,EAAE,MAAM;QACrB,SAAS,EAAE,QAAQ;KACpB;IACD,IAAI,EAAE;QACJ,UAAU,EAAE;YACV,OAAO,EAAE,cAAc;YACvB,SAAS,EAAE,yBAAyB;YACpC,OAAO,EAAE,KAAK;YACd,KAAK,EAAE,KAAK;YACZ,SAAS,EAAE,MAAM;SAClB;KACF;IACD,qBAAqB,EAAE;QACrB,IAAI,EAAE;YACJ,OAAO,EAAE,KAAK;SACf;QACD,KAAK,EAAE;YACL,OAAO,EAAE,MAAM;SAChB;QACD,KAAK,EAAE;YACL,OAAO,EAAE,OAAO;SACjB;KACF;CACF,CAAC,CAAC,CAAA;AAEH,8DAA8D;AAC9D,MAAM,cAAc,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC5D,4EAA4E;IAC5E,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,KAAK,CAAA;QAClB,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;YAC9B,IAAI,CAAC,MAAM,EAAE;gBACX,QAAQ,CAAC,IAAI,CAAC,CAAA;aACf;QACH,CAAC,EAAE,GAAG,CAAC,CAAA;QACP,OAAO,GAAG,EAAE;YACV,YAAY,CAAC,OAAO,CAAC,CAAA;YACrB,MAAM,GAAG,IAAI,CAAA;QACf,CAAC,CAAA;IACH,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrC,8DAA8D;IAC9D,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,IAAA,2BAAS,EAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC3D,MAAM,MAAM,GAAG,aAAa,IAAI,WAAW,CAAA;IAC3C,OAAO,CACL,8DACG,KAAK,CAAC,CAAC,CAAC,CACP,uCAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC7B,8BAAC,qBAAU,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,OAAO,IACjD,MAAM,CAAC,CAAC,CAAC,GAAG,MAAM,EAAE,CAAC,CAAC,CAAC,SAAS,CACtB,CACT,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,8BAA8B,GAAG,IAAA,qBAAQ,EAC7C,CAAC,EACC,KAAK,GAIN,EAAE,EAAE;IACH,IAAI,KAAK,CAAC,KAAK,EAAE;QACf,OAAO,CACL,8BAAC,kBAAQ,IACP,OAAO,EAAE,GAAG,KAAK,CAAC,KAAK,EAAE,EACzB,QAAQ,EAAC,OAAO,EAChB,UAAU,EAAC,QAAQ,EACnB,IAAI,EAAE,8BAAC,iBAAW,OAAG,EACrB,MAAM,EAAE,KAAK,CAAC,MAAM,GACpB,CACH,CAAA;KACF;IACD,IAAI,KAAK,CAAC,OAAO,EAAE;QACjB,yFAAyF;QACzF,OAAO,eAAK,CAAC,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAC3C,KAAK,CAAC,OAAO,CACd,CAAC,CAAC,CAAC,CACF,8BAAC,kBAAQ,IAAC,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,EAAE,EAAE,QAAQ,EAAC,MAAM,GAAG,CAC1D,CAAA;KACF;IACD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;QACjB,OAAO,8BAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACxC;IACD,OAAO,KAAK,CAAC,YAAY,CAAA;AAC3B,CAAC,CACF,CAAA;AAED,kBAAe,8BAA8B,CAAA"}

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts

@@ -116,10 +116,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     readonly DisplayMessageComponent: React.FC<any> | undefined;
     trackMenuItems(): MenuItem[];
     readonly viewMenuActions: MenuItem[];
-    regionCannotBeRendered(): undefined; /**
-     * how many milliseconds to wait for the display to
-     * "settle" before re-rendering a block
-     */
+    regionCannotBeRendered(): undefined;
 } & {
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
@@ -205,7 +202,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
      *  string of text describes why it cannot be rendered
      *  react node allows user to force load at current setting
      */
-    regionCannotBeRendered(_region: Region): JSX.Element | undefined;
+    regionCannotBeRendered(_region: Region): JSX.Element | null;
     trackMenuItems(): MenuItem[];
     contextMenuItems(): {
         label: string;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js

@@ -29,7 +29,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.BaseLinearDisplay = void 0;
 /* eslint-disable @typescript-eslint/no-explicit-any */
 const react_1 = __importDefault(require("react"));
-const material_1 = require("@mui/material");
+const TooLargeMessage_1 = __importDefault(require("./TooLargeMessage"));
 const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
@@ -432,25 +432,8 @@ exports.BaseLinearDisplay = mobx_state_tree_1.types
      *  react node allows user to force load at current setting
      */
     regionCannotBeRendered(_region) {
-        const { regionTooLarge, regionTooLargeReason } = self;
-        if (regionTooLarge) {
-            return (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement(material_1.Typography, { component: "span", variant: "body2" },
-                    regionTooLargeReason ? regionTooLargeReason + '. ' : '',
-                    "Zoom in to see features or",
-                    ' '),
-                react_1.default.createElement(material_1.Button, { "data-testid": "force_reload_button", onClick: () => {
-                        if (!self.estimatedRegionStats) {
-                            console.error('No global stats?');
-                        }
-                        else {
-                            self.updateStatsLimit(self.estimatedRegionStats);
-                            self.reload();
-                        }
-                    }, variant: "outlined" }, "Force Load"),
-                react_1.default.createElement(material_1.Typography, { component: "span", variant: "body2" }, "(force load may be slow)")));
-        }
-        return undefined;
+        const { regionTooLarge } = self;
+        return regionTooLarge ? react_1.default.createElement(TooLargeMessage_1.default, { model: self }) : null;
     },
     trackMenuItems() {
         return [];

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map

@@ -1 +1 @@
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package/dist/BaseLinearDisplay/models/TooLargeMessage.d.ts

@@ -0,0 +1,11 @@
+/// <reference types="react" />
+import { Stats } from '@jbrowse/core/data_adapters/BaseAdapter';
+declare function TooLargeMessage({ model, }: {
+    model: {
+        regionTooLargeReason: string;
+        estimatedRegionStats?: Stats;
+        updateStatsLimit: (s: Stats) => void;
+        reload: () => void;
+    };
+}): JSX.Element;
+export default TooLargeMessage;

package/dist/BaseLinearDisplay/models/TooLargeMessage.js

@@ -0,0 +1,22 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const BlockMsg_1 = __importDefault(require("../components/BlockMsg"));
+function TooLargeMessage({ model, }) {
+    const { regionTooLargeReason } = model;
+    return (react_1.default.createElement(BlockMsg_1.default, { severity: "warning", action: () => {
+            if (!model.estimatedRegionStats) {
+                console.error('No global stats?');
+            }
+            else {
+                model.updateStatsLimit(model.estimatedRegionStats);
+                model.reload();
+            }
+        }, buttonText: "Force load", message: `${regionTooLargeReason ? regionTooLargeReason + '. ' : ''}
+      Zoom in to see features or force load (may be slow).` }));
+}
+exports.default = TooLargeMessage;
+//# sourceMappingURL=TooLargeMessage.js.map

package/dist/BaseLinearDisplay/models/TooLargeMessage.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"TooLargeMessage.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/TooLargeMessage.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,sEAA6C;AAG7C,SAAS,eAAe,CAAC,EACvB,KAAK,GAQN;IACC,MAAM,EAAE,oBAAoB,EAAE,GAAG,KAAK,CAAA;IACtC,OAAO,CACL,8BAAC,kBAAQ,IACP,QAAQ,EAAC,SAAS,EAClB,MAAM,EAAE,GAAG,EAAE;YACX,IAAI,CAAC,KAAK,CAAC,oBAAoB,EAAE;gBAC/B,OAAO,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAA;aAClC;iBAAM;gBACL,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,oBAAoB,CAAC,CAAA;gBAClD,KAAK,CAAC,MAAM,EAAE,CAAA;aACf;QACH,CAAC,EACD,UAAU,EAAC,YAAY,EACvB,OAAO,EAAE,GAAG,oBAAoB,CAAC,CAAC,CAAC,oBAAoB,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE;2DACd,GACrD,CACH,CAAA;AACH,CAAC;AAED,kBAAe,eAAe,CAAA"}

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts

@@ -51,7 +51,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
 export default blockState;
 export declare type BlockStateModel = typeof blockState;
 export declare type BlockModel = Instance<BlockStateModel>;
-export declare function renderBlockData(self: Instance<BlockStateModel>, optDisplay?: AbstractDisplayModel): {
+export declare function renderBlockData(self: BlockModel, optDisplay?: AbstractDisplayModel): {
     rendererType: any;
     rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
     renderProps: any;

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"serverSideRenderedBlock.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/serverSideRenderedBlock.ts"],"names":[],"mappings":";;;;;;AAEA,qDAA2E;AAC3E,+DAA4D;AAC5D,6CAQ2B;AAC3B,sDAAqD;AACrD,oDAGiC;AAEjC,sDAGkC;AAElC,kHAAyF;AAEzF,oEAAoE;AACpE,MAAM,UAAU,GAAG,uBAAK;KACrB,KAAK,CAAC,YAAY,EAAE;IACnB,GAAG,EAAE,uBAAK,CAAC,MAAM;IACjB,MAAM,EAAE,YAAM;IACd,UAAU,EAAE,CAAC;IACb,0BAA0B,EAAE,KAAK;IACjC,2BAA2B,EAAE,KAAK;CACnC,CAAC;IACF,yFAAyF;KACxF,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;IACf,gBAAgB,EAAE,SAAwC;IAC1D,MAAM,EAAE,KAAK;IACb,YAAY,EAAE,SAA2C;IACzD,QAAQ,EAAE,SAA6C;IACvD,MAAM,EAAE,SAAgB;IACxB,MAAM,EAAE,EAAE;IACV,KAAK,EAAE,SAAoB;IAC3B,OAAO,EAAE,SAA+B;IACxC,gBAAgB,EAAE,KAAK;IACvB,cAAc,EAAE,wCAA8B;IAC9C,WAAW,EAAE,SAAgB;CAC9B,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE;IACd,IAAI,gBAA6C,CAAA;IACjD,OAAO;QACL,QAAQ;YACN,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA;QACvC,CAAC;QACD,WAAW;YACT,MAAM,OAAO,GAAG,IAAA,2BAAoB,EAAC,IAAI,CAAC,CAAA;YAC1C,IAAA,4BAAqB,EACnB,IAAW,EACX,eAAe,EACf,iBAAwB,EAAE,qCAAqC;YAC/D;gBACE,IAAI,EAAE,GAAG,OAAO,CAAC,EAAE,IAAI,IAAA,wBAAiB,EAAC,IAAI,CAAC,MAAM,CAAC,YAAY;gBACjE,KAAK,EAAE,OAAO,CAAC,WAAW;gBAC1B,eAAe,EAAE,IAAI;aACtB,EACD,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,EAChB,IAAI,CAAC,QAAQ,CACd,CAAA;QACH,CAAC;QACD,SAAS,CAAC,OAAe;YACvB,IAAI,CAAC,MAAM,GAAG,OAAO,CAAA;QACvB,CAAC;QACD,UAAU,CAAC,eAAgC;YACzC,IAAI,gBAAgB,KAAK,SAAS,EAAE;gBAClC,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;oBACpC,gBAAgB,CAAC,KAAK,EAAE,CAAA;iBACzB;aACF;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,eAAe,CAAA;QACpC,CAAC;QACD,UAAU,CAAC,WAAmB;YAC5B,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,WAAW,CAAA;YAC1B,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,WAAW,CACT,KAQa;YAEb,IAAI,CAAC,KAAK,EAAE;gBACV,OAAM;aACP;YACD,MAAM,EACJ,YAAY,EACZ,QAAQ,EACR,MAAM,EACN,gBAAgB,EAChB,WAAW,GACZ,GAAG,KAAK,CAAA;YACT,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;YAChC,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;YACxB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;YACpB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,gBAAgB,CAAA;YACxC,IAAI,CAAC,WAAW,GAAG,WAAW,CAAA;YAC9B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,QAAQ,CAAC,KAAsB;YAC7B,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACpB,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,uCAAuC;YACvC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;YAClB,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;YAC5B,IAAI,IAAA,wBAAgB,EAAC,KAAc,CAAC,EAAE;gBACpC,IAAI,CAAC,MAAM,EAAE,CAAA;aACd;QACH,CAAC;QACD,MAAM;YACJ,IAAI,CAAC,gBAAgB,GAAG,SAAS,CAAA;YACjC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,cAAc,GAAG,wCAA8B,CAAA;YACpD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,IAAA,2BAAS,EAAM,IAAI,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,CAAA;QAClC,CAAC;QACD,aAAa;YACX,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,MAAM,OAAO,GAAG,IAAA,2BAAoB,EAAC,IAAI,CAAC,CAAA;YAC1C,MAAM,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YACvC,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;YAChC,MAAM,EAAE,UAAU,EAAE,GAAG,eAAe,CAAC,IAAA,sBAAI,EAAC,IAAI,CAAC,CAAC,CAAA;YAClD,gEAAgE;YAChE,IAAI,UAAU,EAAE;gBACd,YAAY;qBACT,qBAAqB,CACpB,UAAU,EACV,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CACvC;qBACA,KAAK,CAAC,CAAC,CAAQ,EAAE,EAAE;oBAClB,kEAAkE;oBAClE,OAAO,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC,CAAA;gBACjD,CAAC,CAAC,CAAA;aACL;QACH,CAAC;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEJ,kBAAe,UAAU,CAAA;AAIzB,2EAA2E;AAC3E,mDAAmD;AACnD,SAAgB,eAAe,CAC7B,IAAgB,EAChB,UAAiC;IAEjC,IAAI;QACF,MAAM,OAAO,GAAG,UAAU,IAAK,IAAA,2BAAoB,EAAC,IAAI,CAAS,CAAA;QACjE,MAAM,EAAE,eAAe,EAAE,UAAU,EAAE,GAAG,IAAA,iBAAU,EAAC,OAAO,CAAC,CAAA;QAC3D,MAAM,EAAE,aAAa,EAAE,YAAY,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,OAAO,CAAA;QACnE,MAAM,aAAa,GAAG,IAAA,8BAAqB,EAAC,WAAW,CAAC,CAAA;QACxD,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,YAAY,CAAA;QAC1C,IACE,CAAC,aAAa,CAAC,QAAQ,CAAC,SAAS,CAAC;YAClC,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,WAAC,OAAA,MAAA,eAAe,CAAC,GAAG,CAAC,IAAI,CAAC,0CAAE,OAAO,CAAC,SAAS,CAAC,CAAA,EAAA,CAAC,EAC1E;YACA,M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package/dist/LinearBareDisplay/model.d.ts

@@ -167,7 +167,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
     afterAttach(): void;
 } & {
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
     trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
     contextMenuItems(): {
         label: string;

package/dist/LinearBasicDisplay/model.d.ts

@@ -173,7 +173,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
     afterAttach(): void;
 } & {
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
+    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
     trackMenuItems(): MenuItem[];
     contextMenuItems(): {
         label: string;

package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts

@@ -1,6 +1,8 @@
 /// <reference types="react" />
-import { LinearGenomeViewModel as LGV } from '..';
+import { ExportSvgOptions } from '..';
 export default function ExportSvgDlg({ model, handleClose, }: {
-    model: LGV;
+    model: {
+        exportSvg(opts: ExportSvgOptions): void;
+    };
     handleClose: () => void;
 }): JSX.Element;

package/dist/LinearGenomeView/components/Header.d.ts

@@ -3,5 +3,5 @@ import { LinearGenomeViewModel } from '..';
 declare type LGV = LinearGenomeViewModel;
 declare const LinearGenomeViewHeader: ({ model }: {
     model: LGV;
-}) => JSX.Element;
+}) => JSX.Element | null;
 export default LinearGenomeViewHeader;

package/dist/LinearGenomeView/components/Header.js

@@ -79,8 +79,8 @@ const Controls = ({ model }) => {
         react_1.default.createElement("div", { className: classes.spacer })));
 };
 const LinearGenomeViewHeader = (0, mobx_react_1.observer)(({ model }) => {
-    return model.hideHeaderOverview ? (react_1.default.createElement(Controls, { model: model })) : (react_1.default.createElement(OverviewScaleBar_1.default, { model: model },
-        react_1.default.createElement(Controls, { model: model })));
+    return !model.hideHeader ? (model.hideHeaderOverview ? (react_1.default.createElement(Controls, { model: model })) : (react_1.default.createElement(OverviewScaleBar_1.default, { model: model },
+        react_1.default.createElement(Controls, { model: model })))) : null;
 });
 exports.default = LinearGenomeViewHeader;
 //# sourceMappingURL=Header.js.map

package/dist/LinearGenomeView/components/Header.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/LinearGenomeView.js

@@ -6,13 +6,13 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
+const react_error_boundary_1 = require("react-error-boundary");
 const Icons_1 = require("@jbrowse/core/ui/Icons");
+const ui_1 = require("@jbrowse/core/ui");
 const mobx_react_1 = require("mobx-react");
-const Header_1 = __importDefault(require("./Header"));
 const TrackContainer_1 = __importDefault(require("./TrackContainer"));
 const TracksContainer_1 = __importDefault(require("./TracksContainer"));
 const ImportForm_1 = __importDefault(require("./ImportForm"));
-const MiniControls_1 = __importDefault(require("./MiniControls"));
 const GetSequenceDialog_1 = __importDefault(require("./GetSequenceDialog"));
 const SearchResultsDialog_1 = __importDefault(require("./SearchResultsDialog"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
@@ -43,7 +43,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
     },
 }));
 const LinearGenomeView = (0, mobx_react_1.observer)(({ model }) => {
-    const { tracks, error, hideHeader, initialized, hasDisplayedRegions } = model;
+    const { tracks, error, initialized, hasDisplayedRegions } = model;
     const { classes } = useStyles();
     if (!initialized && !error) {
         return (react_1.default.createElement(material_1.Typography, { className: classes.dots, variant: "h5" }, "Loading"));
@@ -51,18 +51,17 @@ const LinearGenomeView = (0, mobx_react_1.observer)(({ model }) => {
     if (!hasDisplayedRegions || error) {
         return react_1.default.createElement(ImportForm_1.default, { model: model });
     }
+    const MiniControlsComponent = model.MiniControlsComponent();
+    const HeaderComponent = model.HeaderComponent();
     return (react_1.default.createElement("div", { style: { position: 'relative' } },
         model.seqDialogDisplayed ? (react_1.default.createElement(GetSequenceDialog_1.default, { model: model, handleClose: () => model.setGetSequenceDialogOpen(false) })) : null,
         model.isSearchDialogDisplayed ? (react_1.default.createElement(SearchResultsDialog_1.default, { model: model, handleClose: () => model.setSearchResults(undefined, undefined) })) : null,
-        !hideHeader ? (react_1.default.createElement(Header_1.default, { model: model })) : (react_1.default.createElement("div", { style: {
-                position: 'absolute',
-                right: 0,
-                zIndex: 1001,
-            } },
-            react_1.default.createElement(MiniControls_1.default, { model: model }))),
+        react_1.default.createElement(HeaderComponent, { model: model }),
+        react_1.default.createElement(MiniControlsComponent, { model: model }),
         react_1.default.createElement(TracksContainer_1.default, { model: model }, !tracks.length ? (react_1.default.createElement(material_1.Paper, { variant: "outlined", className: classes.note }, !model.hideNoTracksActive ? (react_1.default.createElement(react_1.default.Fragment, null,
             react_1.default.createElement(material_1.Typography, null, "No tracks active."),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: react_1.default.createElement(Icons_1.TrackSelector, null) }, "Open track selector"))) : (react_1.default.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (react_1.default.createElement(TrackContainer_1.default, { key: track.id, model: model, track: track })))))));
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: react_1.default.createElement(Icons_1.TrackSelector, null) }, "Open track selector"))) : (react_1.default.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (react_1.default.createElement(react_error_boundary_1.ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => react_1.default.createElement(ui_1.ErrorMessage, { error: error }) },
+            react_1.default.createElement(TrackContainer_1.default, { model: model, track: track }))))))));
 });
 exports.default = LinearGenomeView;
 //# sourceMappingURL=LinearGenomeView.js.map

package/dist/LinearGenomeView/components/LinearGenomeView.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/MiniControls.d.ts

@@ -2,5 +2,5 @@
 import { LinearGenomeViewModel } from '..';
 declare const MiniControls: (props: {
     model: LinearGenomeViewModel;
-}) => JSX.Element;
+}) => JSX.Element | null;
 export default MiniControls;

package/dist/LinearGenomeView/components/MiniControls.js

@@ -35,19 +35,20 @@ const KeyboardArrowDown_1 = __importDefault(require("@mui/icons-material/Keyboar
 const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
 const MiniControls = (0, mobx_react_1.observer)((props) => {
     const { model } = props;
-    const { bpPerPx, maxBpPerPx, minBpPerPx, scaleFactor } = model;
+    const { bpPerPx, maxBpPerPx, minBpPerPx, scaleFactor, hideHeader } = model;
     const [anchorEl, setAnchorEl] = (0, react_1.useState)();
-    return (react_1.default.createElement(material_1.Paper, { style: { background: '#aaa7' } },
-        react_1.default.createElement(material_1.IconButton, { color: "secondary", onClick: event => setAnchorEl(event.currentTarget) },
-            react_1.default.createElement(KeyboardArrowDown_1.default, { fontSize: "small" })),
-        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary" },
-            react_1.default.createElement(ZoomOut_1.default, { fontSize: "small" })),
-        react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary" },
-            react_1.default.createElement(ZoomIn_1.default, { fontSize: "small" })),
-        react_1.default.createElement(Menu_1.default, { anchorEl: anchorEl, open: Boolean(anchorEl), onMenuItemClick: (_, callback) => {
-                callback();
-                setAnchorEl(undefined);
-            }, onClose: () => setAnchorEl(undefined), menuItems: model.menuItems() })));
+    return hideHeader ? (react_1.default.createElement("div", { style: { position: 'absolute', right: '0px', zIndex: '1001' } },
+        react_1.default.createElement(material_1.Paper, { style: { background: '#aaa7' } },
+            react_1.default.createElement(material_1.IconButton, { color: "secondary", onClick: event => setAnchorEl(event.currentTarget) },
+                react_1.default.createElement(KeyboardArrowDown_1.default, { fontSize: "small" })),
+            react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_out", onClick: () => model.zoom(bpPerPx * 2), disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1, color: "secondary" },
+                react_1.default.createElement(ZoomOut_1.default, { fontSize: "small" })),
+            react_1.default.createElement(material_1.IconButton, { "data-testid": "zoom_in", onClick: () => model.zoom(model.bpPerPx / 2), disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1, color: "secondary" },
+                react_1.default.createElement(ZoomIn_1.default, { fontSize: "small" })),
+            react_1.default.createElement(Menu_1.default, { anchorEl: anchorEl, open: Boolean(anchorEl), onMenuItemClick: (_, callback) => {
+                    callback();
+                    setAnchorEl(undefined);
+                }, onClose: () => setAnchorEl(undefined), menuItems: model.menuItems() })))) : null;
 });
 exports.default = MiniControls;
 //# sourceMappingURL=MiniControls.js.map

package/dist/LinearGenomeView/components/MiniControls.js.map

@@ -1 +1 @@
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package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts

@@ -1,7 +1,9 @@
 /// <reference types="react" />
-import { LinearGenomeViewModel } from '..';
 declare function SequenceDialog({ model, handleClose, }: {
-    model: LinearGenomeViewModel;
+    model: {
+        assemblyNames: string[];
+        toggleTrack(trackId: string): void;
+    };
     handleClose: () => void;
 }): JSX.Element;
 declare const _default: typeof SequenceDialog;

package/dist/LinearGenomeView/components/SequenceSearchDialog.js.map

@@ -1 +1 @@
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