@jbrowse/plugin-linear-genome-view 1.7.1 → 1.7.5

package/dist/LinearGenomeView/index.js

@@ -9,20 +9,20 @@ exports.RESIZE_HANDLE_HEIGHT = exports.INTER_REGION_PADDING_WIDTH = exports.HEAD
 Object.defineProperty(exports, "ReactComponent", {
   enumerable: true,
   get: function get() {
-    return _LinearGenomeView["default"];
+    return _LinearGenomeView.default;
   }
 });
 Object.defineProperty(exports, "RefNameAutocomplete", {
   enumerable: true,
   get: function get() {
-    return _RefNameAutocomplete["default"];
+    return _RefNameAutocomplete.default;
   }
 });
 exports.SPACING = exports.SCALE_BAR_HEIGHT = void 0;
 Object.defineProperty(exports, "SearchBox", {
   enumerable: true,
   get: function get() {
-    return _SearchBox["default"];
+    return _SearchBox.default;
   }
 });
 exports.WIDGET_HEIGHT = void 0;
@@ -96,7 +96,7 @@ var _ExportSvgDialog = _interopRequireDefault(require("./components/ExportSvgDia
 
 var _LinearGenomeView = _interopRequireDefault(require("./components/LinearGenomeView"));
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
@@ -104,7 +104,7 @@ function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 function calculateVisibleLocStrings(contentBlocks) {
   if (!contentBlocks.length) {
@@ -159,15 +159,15 @@ function stateModelFactory(pluginManager) {
     trackLabels: _mobxStateTree.types.optional(_mobxStateTree.types.string, function () {
       return localStorageGetItem('lgv-trackLabels') || 'overlapping';
     }),
-    showCenterLine: _mobxStateTree.types.optional(_mobxStateTree.types["boolean"], function () {
+    showCenterLine: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, function () {
       var setting = localStorageGetItem('lgv-showCenterLine');
       return setting !== undefined && setting !== null ? !!+setting : false;
     }),
-    showCytobandsSetting: _mobxStateTree.types.optional(_mobxStateTree.types["boolean"], function () {
+    showCytobandsSetting: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, function () {
       var setting = localStorageGetItem('lgv-showCytobands');
       return setting !== undefined && setting !== null ? !!+setting : true;
     })
-  }))["volatile"](function () {
+  })).volatile(function () {
     return {
       volatileWidth: undefined,
       minimumBlockWidth: 3,
@@ -314,7 +314,7 @@ function stateModelFactory(pluginManager) {
       },
 
       get assemblyNames() {
-        return (0, _toConsumableArray2["default"])(new Set(self.displayedRegions.map(function (region) {
+        return (0, _toConsumableArray2.default)(new Set(self.displayedRegions.map(function (region) {
           return region.assemblyName;
         })));
       },
@@ -476,7 +476,7 @@ function stateModelFactory(pluginManager) {
           var trackInMap = allActions.get(track.type);
 
           if (!trackInMap) {
-            var viewMenuActions = (0, _clone["default"])(track.viewMenuActions);
+            var viewMenuActions = (0, _clone.default)(track.viewMenuActions);
 
             _this2.rewriteOnClicks(track.type, viewMenuActions);
 
@@ -954,7 +954,7 @@ function stateModelFactory(pluginManager) {
        * @returns array of Region[]
        */
       getSelectedRegions: function getSelectedRegions(leftOffset, rightOffset) {
-        var simView = _Base1DViewModel["default"].create(_objectSpread(_objectSpread({}, (0, _mobxStateTree.getSnapshot)(self)), {}, {
+        var simView = _Base1DViewModel.default.create(_objectSpread(_objectSpread({}, (0, _mobxStateTree.getSnapshot)(self)), {}, {
           interRegionPaddingWidth: self.interRegionPaddingWidth
         }));
 
@@ -1061,7 +1061,7 @@ function stateModelFactory(pluginManager) {
         var assemblyManager = session.assemblyManager;
 
         if (!assemblyName) {
-          var assemblyNames = (0, _toConsumableArray2["default"])(new Set(self.displayedRegions.map(function (region) {
+          var assemblyNames = (0, _toConsumableArray2.default)(new Set(self.displayedRegions.map(function (region) {
             return region.assemblyName;
           })));
 
@@ -1072,7 +1072,7 @@ function stateModelFactory(pluginManager) {
 
           ;
 
-          var _assemblyNames = (0, _slicedToArray2["default"])(assemblyNames, 1);
+          var _assemblyNames = (0, _slicedToArray2.default)(assemblyNames, 1);
 
           assemblyName = _assemblyNames[0];
         }
@@ -1101,7 +1101,7 @@ function stateModelFactory(pluginManager) {
 
     function slide(viewWidths) {
       var _springAnimate = (0, _util.springAnimate)(self.offsetPx, self.offsetPx + self.width * viewWidths, self.scrollTo),
-          _springAnimate2 = (0, _slicedToArray2["default"])(_springAnimate, 2),
+          _springAnimate2 = (0, _slicedToArray2.default)(_springAnimate, 2),
           animate = _springAnimate2[0],
           cancelAnimation = _springAnimate2[1];
 
@@ -1131,7 +1131,7 @@ function stateModelFactory(pluginManager) {
         self.zoomTo(targetBpPerPx);
         self.setScaleFactor(1);
       }),
-          _springAnimate4 = (0, _slicedToArray2["default"])(_springAnimate3, 2),
+          _springAnimate4 = (0, _slicedToArray2.default)(_springAnimate3, 2),
           animate = _springAnimate4[0],
           cancelAnimation = _springAnimate4[1];
 
@@ -1185,13 +1185,13 @@ function stateModelFactory(pluginManager) {
               }];
             });
           },
-          icon: _FolderOpen["default"]
+          icon: _FolderOpen.default
         }, {
           label: 'Export SVG',
-          icon: _PhotoCamera["default"],
+          icon: _PhotoCamera.default,
           onClick: function onClick() {
             (0, _util.getSession)(self).queueDialog(function (handleClose) {
-              return [_ExportSvgDialog["default"], {
+              return [_ExportSvgDialog.default, {
                 model: self,
                 handleClose: handleClose
               }];
@@ -1203,39 +1203,39 @@ function stateModelFactory(pluginManager) {
           icon: _Icons.TrackSelector
         }, {
           label: 'Horizontally flip',
-          icon: _SyncAlt["default"],
+          icon: _SyncAlt.default,
           onClick: self.horizontallyFlip
         }, {
           type: 'divider'
         }, {
           label: 'Show all regions in assembly',
-          icon: _Visibility["default"],
+          icon: _Visibility.default,
           onClick: self.showAllRegionsInAssembly
         }, {
           label: 'Show center line',
-          icon: _Visibility["default"],
+          icon: _Visibility.default,
           type: 'checkbox',
           checked: self.showCenterLine,
           onClick: self.toggleCenterLine
         }, {
           label: 'Show header',
-          icon: _Visibility["default"],
+          icon: _Visibility.default,
           type: 'checkbox',
           checked: !self.hideHeader,
           onClick: self.toggleHeader
         }, {
           label: 'Show header overview',
-          icon: _Visibility["default"],
+          icon: _Visibility.default,
           type: 'checkbox',
           checked: !self.hideHeaderOverview,
           onClick: self.toggleHeaderOverview,
           disabled: self.hideHeader
         }, {
           label: 'Track labels',
-          icon: _Label["default"],
+          icon: _Label.default,
           subMenu: [{
             label: 'Overlapping',
-            icon: _Visibility["default"],
+            icon: _Visibility.default,
             type: 'radio',
             checked: self.trackLabels === 'overlapping',
             onClick: function onClick() {
@@ -1243,7 +1243,7 @@ function stateModelFactory(pluginManager) {
             }
           }, {
             label: 'Offset',
-            icon: _Visibility["default"],
+            icon: _Visibility.default,
             type: 'radio',
             checked: self.trackLabels === 'offset',
             onClick: function onClick() {
@@ -1251,14 +1251,14 @@ function stateModelFactory(pluginManager) {
             }
           }, {
             label: 'Hidden',
-            icon: _Visibility["default"],
+            icon: _Visibility.default,
             type: 'radio',
             checked: self.trackLabels === 'hidden',
             onClick: function onClick() {
               return self.setTrackLabels('hidden');
             }
           }]
-        }].concat((0, _toConsumableArray2["default"])(canShowCytobands ? [{
+        }].concat((0, _toConsumableArray2.default)(canShowCytobands ? [{
           label: showCytobands ? 'Hide ideogram' : 'Show ideograms',
           onClick: function onClick() {
             self.setShowCytobands(!showCytobands);
@@ -1270,7 +1270,7 @@ function stateModelFactory(pluginManager) {
 
         try {
           for (_iterator.s(); !(_step = _iterator.n()).done;) {
-            var _step$value = (0, _slicedToArray2["default"])(_step.value, 2),
+            var _step$value = (0, _slicedToArray2.default)(_step.value, 2),
                 _key2 = _step$value[0],
                 value = _step$value[1];
 
@@ -1300,7 +1300,7 @@ function stateModelFactory(pluginManager) {
     var stringifiedCurrentlyCalculatedStaticBlocks = '';
     return {
       get staticBlocks() {
-        var ret = (0, _calculateStaticBlocks["default"])(self);
+        var ret = (0, _calculateStaticBlocks.default)(self);
         var sret = JSON.stringify(ret);
 
         if (stringifiedCurrentlyCalculatedStaticBlocks !== sret) {
@@ -1312,7 +1312,7 @@ function stateModelFactory(pluginManager) {
       },
 
       get dynamicBlocks() {
-        return (0, _calculateDynamicBlocks["default"])(self);
+        return (0, _calculateDynamicBlocks.default)(self);
       },
 
       get roundedDynamicBlocks() {
@@ -1365,9 +1365,9 @@ function stateModelFactory(pluginManager) {
     return {
       exportSvg: function exportSvg() {
         var _arguments = arguments;
-        return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
           var opts, html, blob;
-          return _regenerator["default"].wrap(function _callee$(_context) {
+          return _regenerator.default.wrap(function _callee$(_context) {
             while (1) {
               switch (_context.prev = _context.next) {
                 case 0:
@@ -1396,7 +1396,7 @@ function stateModelFactory(pluginManager) {
       rubberBandMenuItems: function rubberBandMenuItems() {
         return [{
           label: 'Zoom to region',
-          icon: _ZoomIn["default"],
+          icon: _ZoomIn.default,
           onClick: function onClick() {
             var leftOffset = self.leftOffset,
                 rightOffset = self.rightOffset;
@@ -1407,7 +1407,7 @@ function stateModelFactory(pluginManager) {
           }
         }, {
           label: 'Get sequence',
-          icon: _MenuOpen["default"],
+          icon: _MenuOpen.default,
           onClick: function onClick() {
             self.setSequenceDialogOpen(true);
           }

package/dist/LinearGenomeView/index.test.js

@@ -33,13 +33,13 @@ function initialize() {
   console.warn = jest.fn(); // a stub linear genome view state model that only accepts base track types.
   // used in unit tests.
 
-  var stubManager = new _PluginManager["default"]();
+  var stubManager = new _PluginManager.default();
   stubManager.addTrackType(function () {
     var configSchema = (0, _configuration.ConfigurationSchema)('BasicTrack', {}, {
       baseConfiguration: (0, _models.createBaseTrackConfig)(stubManager),
       explicitIdentifier: 'trackId'
     });
-    return new _TrackType["default"]({
+    return new _TrackType.default({
       name: 'BasicTrack',
       configSchema: configSchema,
       stateModel: (0, _models.createBaseTrackModel)(stubManager, 'BasicTrack', configSchema)
@@ -49,7 +49,7 @@ function initialize() {
     var configSchema = (0, _configuration.ConfigurationSchema)('LinearBareDisplay', {}, {
       explicitlyTyped: true
     });
-    return new _DisplayType["default"]({
+    return new _DisplayType.default({
       name: 'LinearBareDisplay',
       configSchema: configSchema,
       stateModel: (0, _LinearBareDisplay.stateModelFactory)(configSchema),
@@ -61,9 +61,9 @@ function initialize() {
   stubManager.createPluggableElements();
   stubManager.configure();
 
-  var Assembly = _mobxStateTree.types.model({})["volatile"](function () {
+  var Assembly = _mobxStateTree.types.model({}).volatile(function () {
     return {
-      regions: _volvoxDisplayedRegions["default"]
+      regions: _volvoxDisplayedRegions.default
     };
   }).views(function () {
     return {
@@ -100,7 +100,7 @@ function initialize() {
     assemblyManager: _mobxStateTree.types.optional(AssemblyManager, {
       assemblies: {
         volvox: {
-          regions: _volvoxDisplayedRegions["default"]
+          regions: _volvoxDisplayedRegions.default
         }
       }
     })
@@ -235,10 +235,10 @@ test('can instantiate a model that has multiple displayed regions', function ()
   });
   expect(model.offsetPx).toEqual(79401);
 });
-test('can instantiate a model that tests navTo/moveTo', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('can instantiate a model that tests navTo/moveTo', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var _initialize4, Session, LinearGenomeModel, session, width, model;
 
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
@@ -791,7 +791,7 @@ test('can perform pxToBp on human genome things with ellided blocks (zoomed in)'
   }));
   var width = 800;
   model.setWidth(width);
-  model.setDisplayedRegions(_hg38DisplayedRegions["default"]);
+  model.setDisplayedRegions(_hg38DisplayedRegions.default);
   model.setNewView(6359.273152497633, 503862);
   expect(model.pxToBp(0).refName).toBe('Y');
   expect(model.pxToBp(400).refName).toBe('Y');
@@ -819,7 +819,7 @@ test('can perform pxToBp on human genome things with ellided blocks (zoomed out)
   }));
   var width = 800;
   model.setWidth(width);
-  model.setDisplayedRegions(_hg38DisplayedRegions["default"]);
+  model.setDisplayedRegions(_hg38DisplayedRegions.default);
   model.setNewView(3209286.105, -225.5083315372467); // chr1 to the left
 
   expect(model.pxToBp(0).refName).toBe('1');
@@ -836,10 +836,10 @@ test('can perform pxToBp on human genome things with ellided blocks (zoomed out)
   expect(model.pxToBp(1500).refName).toBe('Y_KI270740v1_random');
   expect(model.pxToBp(1500).oob).toBeTruthy();
 });
-test('can showAllRegionsInAssembly', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
+test('can showAllRegionsInAssembly', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
   var _initialize11, Session, LinearGenomeModel, session, width, model;
 
-  return _regenerator["default"].wrap(function _callee2$(_context2) {
+  return _regenerator.default.wrap(function _callee2$(_context2) {
     while (1) {
       switch (_context2.prev = _context2.next) {
         case 0:
@@ -1088,9 +1088,9 @@ test('navToLocString with human assembly', function () {
   var _initialize13 = initialize(),
       LinearGenomeModel = _initialize13.LinearGenomeModel;
 
-  var HumanAssembly = _mobxStateTree.types.model({})["volatile"](function () {
+  var HumanAssembly = _mobxStateTree.types.model({}).volatile(function () {
     return {
-      regions: _hg38DisplayedRegions["default"]
+      regions: _hg38DisplayedRegions.default
     };
   }).views(function () {
     return {
@@ -1126,7 +1126,7 @@ test('navToLocString with human assembly', function () {
     assemblyManager: {
       assemblies: {
         hg38: {
-          regions: _hg38DisplayedRegions["default"]
+          regions: _hg38DisplayedRegions.default
         }
       }
     },
@@ -1135,11 +1135,11 @@ test('navToLocString with human assembly', function () {
     }
   });
   model.view.setWidth(800);
-  model.view.setDisplayedRegions(_hg38DisplayedRegions["default"].slice(0, 1));
+  model.view.setDisplayedRegions(_hg38DisplayedRegions.default.slice(0, 1));
   model.view.navToLocString('2');
-  expect(model.view.bpPerPx).toBe(_hg38DisplayedRegions["default"][1].end / model.view.width);
+  expect(model.view.bpPerPx).toBe(_hg38DisplayedRegions.default[1].end / model.view.width);
   model.view.navToLocString('chr3');
-  expect(model.view.bpPerPx).toBe(_hg38DisplayedRegions["default"][2].end / model.view.width);
+  expect(model.view.bpPerPx).toBe(_hg38DisplayedRegions.default[2].end / model.view.width);
   model.view.navToLocString('chr3:1,000,000,000-1,100,000,000');
   expect(model.view.bpPerPx).toBe(0.02);
   expect(model.view.offsetPx).toBe(9914777550);
@@ -1160,7 +1160,7 @@ test('multi region', function () {
     }]
   }));
   model.setWidth(800);
-  model.setDisplayedRegions(_volvoxDisplayedRegions["default"].slice(0, 1));
+  model.setDisplayedRegions(_volvoxDisplayedRegions.default.slice(0, 1));
   model.navToLocString('ctgA ctgB');
   expect(model.displayedRegions[0].refName).toBe('ctgA');
   expect(model.displayedRegions[1].refName).toBe('ctgB'); // [

package/dist/index.d.ts

@@ -149,7 +149,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     headers?: Record<string, string> | undefined;
                     signal?: AbortSignal | undefined;
                     filters?: string[] | undefined;
-                }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+                }): Promise<{}>;
                 setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
                 setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 clearRegionStats(): void;
@@ -325,7 +325,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     headers?: Record<string, string> | undefined;
                     signal?: AbortSignal | undefined;
                     filters?: string[] | undefined;
-                }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+                }): Promise<{}>;
                 setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
                 setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
                 clearRegionStats(): void;
@@ -511,7 +511,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 headers?: Record<string, string> | undefined;
                 signal?: AbortSignal | undefined;
                 filters?: string[] | undefined;
-            }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
+            }): Promise<{}>;
             setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
             setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
             clearRegionStats(): void;

package/dist/index.js

@@ -37,7 +37,7 @@ Object.defineProperty(exports, "baseLinearDisplayConfigSchema", {
     return _BaseLinearDisplay.baseLinearDisplayConfigSchema;
   }
 });
-exports["default"] = void 0;
+exports.default = void 0;
 Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", {
   enumerable: true,
   get: function get() {
@@ -111,29 +111,29 @@ var _LinearBasicDisplay = require("./LinearBasicDisplay");
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2["default"])(LinearGenomeViewPlugin, _Plugin);
+  (0, _inherits2.default)(LinearGenomeViewPlugin, _Plugin);
 
   var _super = _createSuper(LinearGenomeViewPlugin);
 
   function LinearGenomeViewPlugin() {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, LinearGenomeViewPlugin);
+    (0, _classCallCheck2.default)(this, LinearGenomeViewPlugin);
 
     for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
       args[_key] = arguments[_key];
     }
 
     _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'LinearGenomeViewPlugin');
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "exports", {
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'LinearGenomeViewPlugin');
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "exports", {
       BaseLinearDisplayComponent: _BaseLinearDisplay.BaseLinearDisplayComponent,
       BaseLinearDisplay: _BaseLinearDisplay.BaseLinearDisplay,
       baseLinearDisplayConfigSchema: _BaseLinearDisplay.baseLinearDisplayConfigSchema
@@ -141,7 +141,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
     return _this;
   }
 
-  (0, _createClass2["default"])(LinearGenomeViewPlugin, [{
+  (0, _createClass2.default)(LinearGenomeViewPlugin, [{
     key: "install",
     value: function install(pluginManager) {
       pluginManager.addTrackType(function () {
@@ -149,7 +149,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
           baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager),
           explicitIdentifier: 'trackId'
         });
-        return new _TrackType["default"]({
+        return new _TrackType.default({
           name: 'FeatureTrack',
           configSchema: configSchema,
           stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'FeatureTrack', configSchema)
@@ -160,7 +160,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
           baseConfiguration: (0, _models.createBaseTrackConfig)(pluginManager),
           explicitIdentifier: 'trackId'
         });
-        return new _TrackType["default"]({
+        return new _TrackType.default({
           name: 'BasicTrack',
           configSchema: configSchema,
           stateModel: (0, _models.createBaseTrackModel)(pluginManager, 'BasicTrack', configSchema)
@@ -168,7 +168,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
       });
       pluginManager.addDisplayType(function () {
         var configSchema = (0, _LinearBareDisplay.configSchemaFactory)(pluginManager);
-        return new _DisplayType["default"]({
+        return new _DisplayType.default({
           name: 'LinearBareDisplay',
           configSchema: configSchema,
           stateModel: (0, _LinearBareDisplay.stateModelFactory)(configSchema),
@@ -179,7 +179,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
       });
       pluginManager.addDisplayType(function () {
         var configSchema = (0, _LinearBasicDisplay.configSchema)(pluginManager);
-        return new _DisplayType["default"]({
+        return new _DisplayType.default({
           name: 'LinearBasicDisplay',
           configSchema: configSchema,
           stateModel: (0, _LinearBasicDisplay.modelFactory)(configSchema),
@@ -189,7 +189,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addViewType(function () {
-        return new _ViewType["default"]({
+        return new _ViewType.default({
           name: 'LinearGenomeView',
           stateModel: (0, _LinearGenomeView.stateModelFactory)(pluginManager),
           ReactComponent: /*#__PURE__*/(0, _react.lazy)(function () {
@@ -203,10 +203,10 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
       /*#__PURE__*/
       // @ts-ignore
       function () {
-        var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(_ref) {
+        var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(_ref) {
           var session, assembly, loc, _ref$tracks, tracks, assemblyManager, view, asm, idsNotFound;
 
-          return _regenerator["default"].wrap(function _callee$(_context) {
+          return _regenerator.default.wrap(function _callee$(_context) {
             while (1) {
               switch (_context.prev = _context.next) {
                 case 0:
@@ -281,7 +281,7 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
       if ((0, _util.isAbstractMenuManager)(pluginManager.rootModel)) {
         pluginManager.rootModel.appendToSubMenu(['Add'], {
           label: 'Linear genome view',
-          icon: _LineStyle["default"],
+          icon: _LineStyle.default,
           onClick: function onClick(session) {
             session.addView('LinearGenomeView', {});
           }
@@ -290,6 +290,6 @@ var LinearGenomeViewPlugin = /*#__PURE__*/function (_Plugin) {
     }
   }]);
   return LinearGenomeViewPlugin;
-}(_Plugin2["default"]);
+}(_Plugin2.default);
 
-exports["default"] = LinearGenomeViewPlugin;
+exports.default = LinearGenomeViewPlugin;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-linear-genome-view",
-  "version": "1.7.1",
+  "version": "1.7.5",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -33,14 +33,13 @@
     "postbuild": "tsc --build tsconfig.build.json"
   },
   "dependencies": {
+    "@babel/runtime": "^7.17.9",
     "@material-ui/icons": "^4.9.1",
     "@popperjs/core": "^2.11.0",
     "clone": "^2.1.2",
     "clsx": "^1.0.4",
     "copy-to-clipboard": "^3.3.1",
     "file-saver": "^2.0.0",
-    "is-object": "^1.0.1",
-    "json-stable-stringify": "^1.0.1",
     "normalize-wheel": "^1.0.1",
     "react-popper": "^2.0.0"
   },
@@ -58,5 +57,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "6da232090c90f22ac96fd464c33082c89b8da14b"
+  "gitHead": "2c3a1f0c95a47b24eba790eaeb49274caf297aeb"
 }

package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx

@@ -247,6 +247,11 @@ export const BaseLinearDisplay = types
 
       const { rpcManager } = getSession(self)
       const { adapterConfig } = self
+      if (!adapterConfig) {
+        // A track extending the base track might not have an adapter config
+        // e.g. Apollo tracks don't use adapters
+        return Promise.resolve({})
+      }
       const sessionId = getRpcSessionId(self)
 
       const params = {
@@ -409,6 +414,7 @@ export const BaseLinearDisplay = types
             return
           }
         } catch (e) {
+          console.error(e)
           self.setError(e)
         }
       },

package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts

@@ -6,6 +6,7 @@ import {
   assembleLocString,
   getSession,
   getContainingDisplay,
+  getContainingView,
   getViewParams,
   makeAbortableReaction,
   Feature,
@@ -221,6 +222,7 @@ export function renderBlockData(
     readConfObject(config)
 
     const sessionId = getRpcSessionId(display)
+    const layoutId = getContainingView(display).id
     const cannotBeRenderedReason = display.regionCannotBeRendered(self.region)
 
     return {
@@ -240,6 +242,7 @@ export function renderBlockData(
         adapterConfig,
         rendererType: rendererType.name,
         sessionId,
+        layoutId,
         blockKey: self.key,
         reloadFlag: self.reloadFlag,
         timeout: 1000000, // 10000,