@jbrowse/plugin-linear-genome-view 1.7.1 → 1.7.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (49) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +18 -18
  2. package/dist/BaseLinearDisplay/components/Block.js +4 -4
  3. package/dist/BaseLinearDisplay/components/LinearBlocks.js +11 -11
  4. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +16 -16
  5. package/dist/BaseLinearDisplay/index.js +2 -2
  6. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +1 -1
  7. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +42 -34
  8. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -0
  9. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +11 -9
  10. package/dist/LinearBareDisplay/model.d.ts +1 -1
  11. package/dist/LinearBareDisplay/model.js +1 -1
  12. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +11 -11
  13. package/dist/LinearBasicDisplay/configSchema.js +1 -1
  14. package/dist/LinearBasicDisplay/index.js +2 -2
  15. package/dist/LinearBasicDisplay/model.d.ts +1 -1
  16. package/dist/LinearBasicDisplay/model.js +10 -10
  17. package/dist/LinearGenomeView/components/CenterLine.js +5 -5
  18. package/dist/LinearGenomeView/components/ExportSvgDialog.js +16 -16
  19. package/dist/LinearGenomeView/components/Header.js +20 -20
  20. package/dist/LinearGenomeView/components/HelpDialog.js +4 -4
  21. package/dist/LinearGenomeView/components/ImportForm.js +28 -28
  22. package/dist/LinearGenomeView/components/LinearGenomeView.js +15 -15
  23. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +9 -9
  24. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +40 -40
  25. package/dist/LinearGenomeView/components/MiniControls.js +9 -9
  26. package/dist/LinearGenomeView/components/OverviewRubberBand.js +19 -19
  27. package/dist/LinearGenomeView/components/OverviewScaleBar.js +28 -28
  28. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +27 -27
  29. package/dist/LinearGenomeView/components/RubberBand.js +18 -18
  30. package/dist/LinearGenomeView/components/Ruler.js +11 -11
  31. package/dist/LinearGenomeView/components/ScaleBar.js +19 -19
  32. package/dist/LinearGenomeView/components/ScaleBar.test.js +3 -3
  33. package/dist/LinearGenomeView/components/SearchBox.js +9 -9
  34. package/dist/LinearGenomeView/components/SearchResultsDialog.js +15 -15
  35. package/dist/LinearGenomeView/components/SequenceDialog.js +28 -37
  36. package/dist/LinearGenomeView/components/TrackContainer.js +14 -14
  37. package/dist/LinearGenomeView/components/TrackLabel.js +17 -19
  38. package/dist/LinearGenomeView/components/TracksContainer.js +10 -10
  39. package/dist/LinearGenomeView/components/VerticalGuides.js +11 -11
  40. package/dist/LinearGenomeView/components/ZoomControls.js +9 -9
  41. package/dist/LinearGenomeView/index.js +35 -35
  42. package/dist/LinearGenomeView/index.test.js +19 -19
  43. package/dist/index.d.ts +3 -3
  44. package/dist/index.js +18 -18
  45. package/package.json +3 -4
  46. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +6 -0
  47. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +3 -0
  48. package/src/LinearGenomeView/components/SequenceDialog.tsx +6 -13
  49. package/src/LinearGenomeView/components/TrackLabel.tsx +6 -6
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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@@ -39,7 +39,7 @@ var _ = require("..");
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  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2["default"])(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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  var SearchResultsDialog = /*#__PURE__*/(0, _react.lazy)(function () {
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  return Promise.resolve().then(function () {
@@ -73,12 +73,12 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  modelError = model.error;
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  var _useState = (0, _react.useState)(assemblyNames[0]),
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- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
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+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
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  selectedAsm = _useState2[0],
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  setSelectedAsm = _useState2[1];
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  var _useState3 = (0, _react.useState)(modelError),
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- _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
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+ _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
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  error = _useState4[0],
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  setError = _useState4[1];
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@@ -89,13 +89,13 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  var err = assemblyError || error;
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  var _useState5 = (0, _react.useState)(),
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- _useState6 = (0, _slicedToArray2["default"])(_useState5, 2),
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+ _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
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  myOption = _useState6[0],
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  setOption = _useState6[1]; // use this instead of useState initializer because the useState initializer
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  // won't update in response to an observable
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- var option = myOption || new _BaseResults["default"]({
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+ var option = myOption || new _BaseResults.default({
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  label: (_regions$ = regions[0]) === null || _regions$ === void 0 ? void 0 : _regions$.refName
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  });
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  var selectedRegion = option === null || option === void 0 ? void 0 : option.getLocation();
@@ -110,11 +110,11 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  function _fetchResults() {
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- _fetchResults = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(query, searchType) {
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+ _fetchResults = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(query, searchType) {
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  var _assembly$allRefNames;
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  var textSearchResults, refNameResults;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
@@ -133,11 +133,11 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  refNameResults = assembly === null || assembly === void 0 ? void 0 : (_assembly$allRefNames = assembly.allRefNames) === null || _assembly$allRefNames === void 0 ? void 0 : _assembly$allRefNames.filter(function (refName) {
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  return refName.startsWith(query);
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  }).map(function (r) {
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- return new _BaseResults["default"]({
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+ return new _BaseResults.default({
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  label: r
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  });
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  }).slice(0, 10);
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- return _context.abrupt("return", [].concat((0, _toConsumableArray2["default"])(refNameResults || []), (0, _toConsumableArray2["default"])(textSearchResults || [])));
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+ return _context.abrupt("return", [].concat((0, _toConsumableArray2.default)(refNameResults || []), (0, _toConsumableArray2.default)(textSearchResults || [])));
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  case 6:
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  case "end":
@@ -154,10 +154,10 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  }
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  function _handleSelectedRegion() {
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- _handleSelectedRegion = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(input) {
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+ _handleSelectedRegion = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(input) {
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  var trackId, location, _assembly$allRefNames2, results;
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- return _regenerator["default"].wrap(function _callee2$(_context2) {
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+ return _regenerator.default.wrap(function _callee2$(_context2) {
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  while (1) {
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  switch (_context2.prev = _context2.next) {
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  case 0:
@@ -233,24 +233,24 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  var height = _.WIDGET_HEIGHT + 5; // implementation notes:
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  // having this wrapped in a form allows intuitive use of enter key to submit
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- return /*#__PURE__*/_react["default"].createElement("div", {
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+ return /*#__PURE__*/_react.default.createElement("div", {
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  className: classes.container
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- }, err ? /*#__PURE__*/_react["default"].createElement(_ErrorMessage["default"], {
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+ }, err ? /*#__PURE__*/_react.default.createElement(_ErrorMessage.default, {
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  error: err
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- }) : null, /*#__PURE__*/_react["default"].createElement(_core.Container, {
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+ }) : null, /*#__PURE__*/_react.default.createElement(_core.Container, {
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  className: classes.importFormContainer
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- }, /*#__PURE__*/_react["default"].createElement("form", {
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+ }, /*#__PURE__*/_react.default.createElement("form", {
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  onSubmit: function onSubmit(event) {
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  return event.preventDefault();
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  }
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- }, /*#__PURE__*/_react["default"].createElement(_core.Grid, {
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+ }, /*#__PURE__*/_react.default.createElement(_core.Grid, {
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  container: true,
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  spacing: 1,
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  justifyContent: "center",
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  alignItems: "center"
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- }, /*#__PURE__*/_react["default"].createElement(_core.Grid, {
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+ }, /*#__PURE__*/_react.default.createElement(_core.Grid, {
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  item: true
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- }, /*#__PURE__*/_react["default"].createElement(_AssemblySelector["default"], {
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+ }, /*#__PURE__*/_react.default.createElement(_AssemblySelector.default, {
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  onChange: function onChange(val) {
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  setError(undefined);
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  setSelectedAsm(val);
@@ -262,13 +262,13 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  height: height
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  }
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  }
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- })), /*#__PURE__*/_react["default"].createElement(_core.Grid, {
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+ })), /*#__PURE__*/_react.default.createElement(_core.Grid, {
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  item: true
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- }, selectedAsm ? err ? /*#__PURE__*/_react["default"].createElement(_Close["default"], {
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+ }, selectedAsm ? err ? /*#__PURE__*/_react.default.createElement(_Close.default, {
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  style: {
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  color: 'red'
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  }
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- }) : selectedRegion ? /*#__PURE__*/_react["default"].createElement(_RefNameAutocomplete["default"], {
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+ }) : selectedRegion ? /*#__PURE__*/_react.default.createElement(_RefNameAutocomplete.default, {
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  fetchResults: fetchResults,
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  model: model,
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  assemblyName: assemblyError ? undefined : selectedAsm,
@@ -290,13 +290,13 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  }
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  }
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  }
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- }) : /*#__PURE__*/_react["default"].createElement(_core.CircularProgress, {
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+ }) : /*#__PURE__*/_react.default.createElement(_core.CircularProgress, {
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  role: "progressbar",
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  size: 20,
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  disableShrink: true
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- }) : null), /*#__PURE__*/_react["default"].createElement(_core.Grid, {
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+ }) : null), /*#__PURE__*/_react.default.createElement(_core.Grid, {
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  item: true
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- }, /*#__PURE__*/_react["default"].createElement(_core.Button, {
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+ }, /*#__PURE__*/_react.default.createElement(_core.Button, {
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  type: "submit",
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  disabled: !selectedRegion,
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  className: classes.button,
@@ -309,7 +309,7 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  },
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  variant: "contained",
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  color: "primary"
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- }, "Open"), /*#__PURE__*/_react["default"].createElement(_core.Button, {
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+ }, "Open"), /*#__PURE__*/_react.default.createElement(_core.Button, {
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  disabled: !selectedRegion,
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  className: classes.button,
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  onClick: function onClick() {
@@ -318,7 +318,7 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  },
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  variant: "contained",
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  color: "secondary"
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- }, "Show all regions in assembly"))))), isSearchDialogDisplayed ? /*#__PURE__*/_react["default"].createElement(SearchResultsDialog, {
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+ }, "Show all regions in assembly"))))), isSearchDialogDisplayed ? /*#__PURE__*/_react.default.createElement(SearchResultsDialog, {
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  model: model,
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  optAssemblyName: selectedAsm,
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  handleClose: function handleClose() {
@@ -327,4 +327,4 @@ var ImportForm = (0, _mobxReact.observer)(function (_ref) {
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  }) : null);
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  });
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  var _default = ImportForm;
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- exports["default"] = _default;
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+ exports.default = _default;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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@@ -68,57 +68,57 @@ var LinearGenomeView = (0, _mobxReact.observer)(function (_ref) {
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- return /*#__PURE__*/_react["default"].createElement(_core.Typography, {
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+ return /*#__PURE__*/_react.default.createElement(_core.Typography, {
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  className: classes.dots,
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  variant: "h5"
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  }, "Loading");
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  }
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- return /*#__PURE__*/_react["default"].createElement(_ImportForm["default"], {
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+ return /*#__PURE__*/_react.default.createElement(_ImportForm.default, {
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  model: model
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  });
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  }
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- return /*#__PURE__*/_react["default"].createElement("div", {
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+ return /*#__PURE__*/_react.default.createElement("div", {
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  style: {
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  position: 'relative'
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  }
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- }, model.seqDialogDisplayed ? /*#__PURE__*/_react["default"].createElement(_SequenceDialog["default"], {
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+ }, model.seqDialogDisplayed ? /*#__PURE__*/_react.default.createElement(_SequenceDialog.default, {
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  model: model,
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  handleClose: function handleClose() {
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  model.setSequenceDialogOpen(false);
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  }
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- }) : null, model.isSearchDialogDisplayed ? /*#__PURE__*/_react["default"].createElement(_SearchResultsDialog["default"], {
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+ }) : null, model.isSearchDialogDisplayed ? /*#__PURE__*/_react.default.createElement(_SearchResultsDialog.default, {
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  model: model,
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  }
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- }) : null, !hideHeader ? /*#__PURE__*/_react["default"].createElement(_Header["default"], {
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+ }) : null, !hideHeader ? /*#__PURE__*/_react.default.createElement(_Header.default, {
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  model: model
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- }) : /*#__PURE__*/_react["default"].createElement("div", {
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+ }) : /*#__PURE__*/_react.default.createElement("div", {
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  style: {
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  position: 'absolute',
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  right: 0,
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  zIndex: 1001
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  }
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- }, /*#__PURE__*/_react["default"].createElement(_MiniControls["default"], {
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+ }, /*#__PURE__*/_react.default.createElement(_MiniControls.default, {
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  model: model
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- })), /*#__PURE__*/_react["default"].createElement(_TracksContainer["default"], {
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+ })), /*#__PURE__*/_react.default.createElement(_TracksContainer.default, {
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  model: model
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- }, !tracks.length ? /*#__PURE__*/_react["default"].createElement(_core.Paper, {
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+ }, !tracks.length ? /*#__PURE__*/_react.default.createElement(_core.Paper, {
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  variant: "outlined",
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  className: classes.note
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- }, /*#__PURE__*/_react["default"].createElement(_core.Typography, null, "No tracks active."), /*#__PURE__*/_react["default"].createElement(_core.Button, {
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+ }, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No tracks active."), /*#__PURE__*/_react.default.createElement(_core.Button, {
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  variant: "contained",
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  color: "primary",
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  onClick: model.activateTrackSelector,
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  style: {
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  zIndex: 1000
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  },
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- startIcon: /*#__PURE__*/_react["default"].createElement(_Icons.TrackSelector, null)
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+ startIcon: /*#__PURE__*/_react.default.createElement(_Icons.TrackSelector, null)
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  }, "Open track selector")) : tracks.map(function (track) {
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- return /*#__PURE__*/_react["default"].createElement(_TrackContainer["default"], {
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+ return /*#__PURE__*/_react.default.createElement(_TrackContainer.default, {
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  key: track.id,
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  model: model,
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  track: track
@@ -126,4 +126,4 @@ var LinearGenomeView = (0, _mobxReact.observer)(function (_ref) {
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  })));
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  });
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  var _default = LinearGenomeView;
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- exports["default"] = _default;
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+ exports.default = _default;
@@ -39,10 +39,10 @@ var assemblyConf = {
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  }
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  };
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  describe('<LinearGenomeView />', function () {
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- it('renders setup wizard', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ it('renders setup wizard', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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@@ -53,7 +53,7 @@ describe('<LinearGenomeView />', function () {
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  });
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  model = session.views[0];
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  model.setWidth(800);
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- _render = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_LinearGenomeView["default"], {
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+ _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_LinearGenomeView.default, {
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  model: model
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  })), findByText = _render.findByText;
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  expect(model.displayedRegions.length).toEqual(0);
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  }
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- it('renders one track, one region', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
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+ it('renders one track, one region', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
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+ return _regenerator.default.wrap(function _callee2$(_context2) {
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  case 0:
@@ -121,7 +121,7 @@ describe('<LinearGenomeView />', function () {
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  });
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  model = session.views[0];
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  model.setWidth(800);
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- _render2 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_LinearGenomeView["default"], {
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+ _render2 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_LinearGenomeView.default, {
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  model: model
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  })), container = _render2.container, findByText = _render2.findByText;
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  _context2.next = 9;
@@ -141,10 +141,10 @@ describe('<LinearGenomeView />', function () {
141
141
  }
142
142
  }, _callee2);
143
143
  })));
144
- it('renders two tracks, two regions', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
144
+ it('renders two tracks, two regions', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
145
145
  var session, model, _render3, container, findByText, findAllByTestId;
146
146
 
147
- return _regenerator["default"].wrap(function _callee3$(_context3) {
147
+ return _regenerator.default.wrap(function _callee3$(_context3) {
148
148
  while (1) {
149
149
  switch (_context3.prev = _context3.next) {
150
150
  case 0:
@@ -207,7 +207,7 @@ describe('<LinearGenomeView />', function () {
207
207
  });
208
208
  model = session.views[0];
209
209
  model.setWidth(800);
210
- _render3 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_LinearGenomeView["default"], {
210
+ _render3 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_LinearGenomeView.default, {
211
211
  model: model
212
212
  })), container = _render3.container, findByText = _render3.findByText, findAllByTestId = _render3.findAllByTestId;
213
213
  _context3.next = 10;
@@ -35,7 +35,7 @@ var _OverviewScaleBar = require("./OverviewScaleBar");
35
35
 
36
36
  function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
37
37
 
38
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
38
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
39
39
 
40
40
  function ScaleBar(_ref) {
41
41
  var model = _ref.model,
@@ -47,25 +47,25 @@ function ScaleBar(_ref) {
47
47
  var displayBp = (0, _util.getBpDisplayStr)(totalBp);
48
48
  var x0 = Math.max(-offsetPx, 0);
49
49
  var x1 = x0 + totalWidthPx;
50
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement("line", {
50
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("line", {
51
51
  x1: x0,
52
52
  x2: x1,
53
53
  y1: 10,
54
54
  y2: 10,
55
55
  stroke: "black"
56
- }), /*#__PURE__*/_react["default"].createElement("line", {
56
+ }), /*#__PURE__*/_react.default.createElement("line", {
57
57
  x1: x0,
58
58
  x2: x0,
59
59
  y1: 5,
60
60
  y2: 15,
61
61
  stroke: "black"
62
- }), /*#__PURE__*/_react["default"].createElement("line", {
62
+ }), /*#__PURE__*/_react.default.createElement("line", {
63
63
  x1: x1,
64
64
  x2: x1,
65
65
  y1: 5,
66
66
  y2: 15,
67
67
  stroke: "black"
68
- }), /*#__PURE__*/_react["default"].createElement("text", {
68
+ }), /*#__PURE__*/_react.default.createElement("text", {
69
69
  x: x0 + (x1 - x0) / 2,
70
70
  y: fontSize * 2,
71
71
  textAnchor: "middle",
@@ -81,9 +81,9 @@ function SVGRuler(_ref2) {
81
81
  viewOffsetPx = model.offsetPx,
82
82
  bpPerPx = model.bpPerPx;
83
83
  var renderRuler = contentBlocks.length < 5;
84
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement("defs", null, /*#__PURE__*/_react["default"].createElement("clipPath", {
84
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement("defs", null, /*#__PURE__*/_react.default.createElement("clipPath", {
85
85
  id: "clip-ruler"
86
- }, /*#__PURE__*/_react["default"].createElement("rect", {
86
+ }, /*#__PURE__*/_react.default.createElement("rect", {
87
87
  x: 0,
88
88
  y: 0,
89
89
  width: width,
@@ -96,22 +96,22 @@ function SVGRuler(_ref2) {
96
96
  offsetPx = block.offsetPx,
97
97
  refName = block.refName;
98
98
  var offsetLeft = offsetPx - viewOffsetPx;
99
- return /*#__PURE__*/_react["default"].createElement("g", {
99
+ return /*#__PURE__*/_react.default.createElement("g", {
100
100
  key: "".concat(key),
101
101
  transform: "translate(".concat(offsetLeft, " 0)")
102
- }, /*#__PURE__*/_react["default"].createElement("text", {
102
+ }, /*#__PURE__*/_react.default.createElement("text", {
103
103
  x: offsetLeft / bpPerPx,
104
104
  y: fontSize,
105
105
  fontSize: fontSize
106
- }, refName), renderRuler ? /*#__PURE__*/_react["default"].createElement("g", {
106
+ }, refName), renderRuler ? /*#__PURE__*/_react.default.createElement("g", {
107
107
  transform: "translate(0 20)",
108
108
  clipPath: "url(#clip-ruler)"
109
- }, /*#__PURE__*/_react["default"].createElement(_Ruler["default"], {
109
+ }, /*#__PURE__*/_react.default.createElement(_Ruler.default, {
110
110
  start: start,
111
111
  end: end,
112
112
  bpPerPx: bpPerPx,
113
113
  reversed: reversed
114
- })) : /*#__PURE__*/_react["default"].createElement("line", {
114
+ })) : /*#__PURE__*/_react.default.createElement("line", {
115
115
  strokeWidth: 1,
116
116
  stroke: "black",
117
117
  x1: start / bpPerPx,
@@ -150,7 +150,7 @@ var SVGHeader = function SVGHeader(_ref3) {
150
150
  var assemblyName = assemblyNames.length > 1 ? '' : assemblyNames[0];
151
151
  var assembly = assemblyManager.get(assemblyName);
152
152
 
153
- var overview = _Base1DViewModel["default"].create({
153
+ var overview = _Base1DViewModel.default.create({
154
154
  displayedRegions: JSON.parse(JSON.stringify(displayedRegions)),
155
155
  interRegionPaddingWidth: 0,
156
156
  minimumBlockWidth: model.minimumBlockWidth
@@ -169,39 +169,39 @@ var SVGHeader = function SVGHeader(_ref3) {
169
169
  coord: last.reversed ? last.start : last.end
170
170
  })) || 0;
171
171
  var cytobandHeight = showCytobands ? cytobandHeightIfExists : 0;
172
- return /*#__PURE__*/_react["default"].createElement("g", {
172
+ return /*#__PURE__*/_react.default.createElement("g", {
173
173
  id: "header"
174
- }, /*#__PURE__*/_react["default"].createElement("text", {
174
+ }, /*#__PURE__*/_react.default.createElement("text", {
175
175
  x: 0,
176
176
  y: fontSize,
177
177
  fontSize: fontSize
178
- }, assemblyName), showCytobands ? /*#__PURE__*/_react["default"].createElement("g", {
178
+ }, assemblyName), showCytobands ? /*#__PURE__*/_react.default.createElement("g", {
179
179
  transform: "translate(0 ".concat(rulerHeight, ")")
180
- }, /*#__PURE__*/_react["default"].createElement(_OverviewScaleBar.Cytobands, {
180
+ }, /*#__PURE__*/_react.default.createElement(_OverviewScaleBar.Cytobands, {
181
181
  overview: overview,
182
182
  assembly: assembly,
183
183
  block: block
184
- }), /*#__PURE__*/_react["default"].createElement("rect", {
184
+ }), /*#__PURE__*/_react.default.createElement("rect", {
185
185
  stroke: "red",
186
186
  fill: "rgb(255,0,0,0.1)",
187
187
  width: Math.max(lastOverviewPx - firstOverviewPx, 0.5),
188
188
  height: _.HEADER_OVERVIEW_HEIGHT - 1,
189
189
  x: firstOverviewPx,
190
190
  y: 0.5
191
- }), /*#__PURE__*/_react["default"].createElement("g", {
191
+ }), /*#__PURE__*/_react.default.createElement("g", {
192
192
  transform: "translate(0,".concat(_.HEADER_OVERVIEW_HEIGHT, ")")
193
- }, /*#__PURE__*/_react["default"].createElement(_OverviewScaleBar.Polygon, {
193
+ }, /*#__PURE__*/_react.default.createElement(_OverviewScaleBar.Polygon, {
194
194
  overview: overview,
195
195
  model: model,
196
196
  useOffset: false
197
- }))) : null, /*#__PURE__*/_react["default"].createElement("g", {
197
+ }))) : null, /*#__PURE__*/_react.default.createElement("g", {
198
198
  transform: "translate(0 ".concat(fontSize + cytobandHeight, ")")
199
- }, /*#__PURE__*/_react["default"].createElement(ScaleBar, {
199
+ }, /*#__PURE__*/_react.default.createElement(ScaleBar, {
200
200
  model: model,
201
201
  fontSize: fontSize
202
- })), /*#__PURE__*/_react["default"].createElement("g", {
202
+ })), /*#__PURE__*/_react.default.createElement("g", {
203
203
  transform: "translate(0 ".concat(rulerHeight + cytobandHeight, ")")
204
- }, /*#__PURE__*/_react["default"].createElement(SVGRuler, {
204
+ }, /*#__PURE__*/_react.default.createElement(SVGRuler, {
205
205
  model: model,
206
206
  fontSize: fontSize,
207
207
  width: width
@@ -215,8 +215,8 @@ var SVGRegionSeparators = function SVGRegionSeparators(_ref4) {
215
215
  var dynamicBlocks = model.dynamicBlocks,
216
216
  offsetPx = model.offsetPx,
217
217
  interRegionPaddingWidth = model.interRegionPaddingWidth;
218
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, dynamicBlocks.contentBlocks.slice(1).map(function (block) {
219
- return /*#__PURE__*/_react["default"].createElement("rect", {
218
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, dynamicBlocks.contentBlocks.slice(1).map(function (block) {
219
+ return /*#__PURE__*/_react.default.createElement("rect", {
220
220
  key: block.key,
221
221
  x: block.offsetPx - offsetPx - interRegionPaddingWidth,
222
222
  width: interRegionPaddingWidth,
@@ -233,22 +233,22 @@ function SVGTracks(_ref5) {
233
233
  var displayResults = _ref5.displayResults,
234
234
  model = _ref5.model,
235
235
  offset = _ref5.offset;
236
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, displayResults.map(function (_ref6) {
236
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, displayResults.map(function (_ref6) {
237
237
  var track = _ref6.track,
238
238
  result = _ref6.result;
239
239
  var current = offset;
240
240
  var trackName = (0, _configuration.getConf)(track, 'name') || "Reference sequence (".concat((0, _configuration.readConfObject)((0, _mobxStateTree.getParent)(track.configuration), 'name'), ")");
241
241
  var display = track.displays[0];
242
242
  offset += display.height + paddingHeight + textHeight;
243
- return /*#__PURE__*/_react["default"].createElement("g", {
243
+ return /*#__PURE__*/_react.default.createElement("g", {
244
244
  key: track.configuration.trackId,
245
245
  transform: "translate(0 ".concat(current, ")")
246
- }, /*#__PURE__*/_react["default"].createElement("text", {
246
+ }, /*#__PURE__*/_react.default.createElement("text", {
247
247
  fontSize: fontSize,
248
248
  x: Math.max(-model.offsetPx, 0)
249
- }, trackName), /*#__PURE__*/_react["default"].createElement("g", {
249
+ }, trackName), /*#__PURE__*/_react.default.createElement("g", {
250
250
  transform: "translate(0 ".concat(textHeight, ")")
251
- }, result, /*#__PURE__*/_react["default"].createElement(SVGRegionSeparators, {
251
+ }, result, /*#__PURE__*/_react.default.createElement(SVGRegionSeparators, {
252
252
  model: model,
253
253
  height: display.height
254
254
  })));
@@ -261,9 +261,9 @@ function renderToSvg(_x, _x2) {
261
261
  }
262
262
 
263
263
  function _renderToSvg() {
264
- _renderToSvg = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(model, opts) {
264
+ _renderToSvg = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(model, opts) {
265
265
  var width, tracks, showCytobands, shift, offset, height, displayResults;
266
- return _regenerator["default"].wrap(function _callee2$(_context2) {
266
+ return _regenerator.default.wrap(function _callee2$(_context2) {
267
267
  while (1) {
268
268
  switch (_context2.prev = _context2.next) {
269
269
  case 0:
@@ -279,9 +279,9 @@ function _renderToSvg() {
279
279
  height = totalHeight(tracks) + offset;
280
280
  _context2.next = 8;
281
281
  return Promise.all(tracks.map( /*#__PURE__*/function () {
282
- var _ref7 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(track) {
282
+ var _ref7 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(track) {
283
283
  var display, result;
284
- return _regenerator["default"].wrap(function _callee$(_context) {
284
+ return _regenerator.default.wrap(function _callee$(_context) {
285
285
  while (1) {
286
286
  switch (_context.prev = _context.next) {
287
287
  case 0:
@@ -317,22 +317,22 @@ function _renderToSvg() {
317
317
 
318
318
  case 8:
319
319
  displayResults = _context2.sent;
320
- return _context2.abrupt("return", (0, _server.renderToStaticMarkup)( /*#__PURE__*/_react["default"].createElement("svg", {
320
+ return _context2.abrupt("return", (0, _server.renderToStaticMarkup)( /*#__PURE__*/_react.default.createElement("svg", {
321
321
  width: width,
322
322
  height: height,
323
323
  xmlns: "http://www.w3.org/2000/svg",
324
324
  xmlnsXlink: "http://www.w3.org/1999/xlink",
325
325
  viewBox: [0, 0, width + shift * 2, height].toString()
326
- }, /*#__PURE__*/_react["default"].createElement("rect", {
326
+ }, /*#__PURE__*/_react.default.createElement("rect", {
327
327
  width: width + shift * 2,
328
328
  height: height,
329
329
  fill: "white"
330
- }), /*#__PURE__*/_react["default"].createElement("g", {
330
+ }), /*#__PURE__*/_react.default.createElement("g", {
331
331
  stroke: "none",
332
332
  transform: "translate(".concat(shift, " ").concat(fontSize, ")")
333
- }, /*#__PURE__*/_react["default"].createElement(SVGHeader, {
333
+ }, /*#__PURE__*/_react.default.createElement(SVGHeader, {
334
334
  model: model
335
- }), /*#__PURE__*/_react["default"].createElement(SVGTracks, {
335
+ }), /*#__PURE__*/_react.default.createElement(SVGTracks, {
336
336
  model: model,
337
337
  displayResults: displayResults,
338
338
  offset: offset
@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports["default"] = void 0;
10
+ exports.default = void 0;
11
11
 
12
12
  var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
13
13
 
@@ -29,7 +29,7 @@ var _Menu = _interopRequireDefault(require("@jbrowse/core/ui/Menu"));
29
29
 
30
30
  function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
31
31
 
32
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
32
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
33
33
 
34
34
  var MiniControls = (0, _mobxReact.observer)(function (props) {
35
35
  var model = props.model;
@@ -39,34 +39,34 @@ var MiniControls = (0, _mobxReact.observer)(function (props) {
39
39
  scaleFactor = model.scaleFactor;
40
40
 
41
41
  var _useState = (0, _react.useState)(),
42
- _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
42
+ _useState2 = (0, _slicedToArray2.default)(_useState, 2),
43
43
  anchorEl = _useState2[0],
44
44
  setAnchorEl = _useState2[1];
45
45
 
46
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_Paper["default"], {
46
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_Paper.default, {
47
47
  style: {
48
48
  background: '#aaa7'
49
49
  }
50
- }, /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
50
+ }, /*#__PURE__*/_react.default.createElement(_IconButton.default, {
51
51
  color: "secondary",
52
52
  onClick: function onClick(event) {
53
53
  setAnchorEl(event.currentTarget);
54
54
  }
55
- }, /*#__PURE__*/_react["default"].createElement(_KeyboardArrowDown["default"], null)), /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
55
+ }, /*#__PURE__*/_react.default.createElement(_KeyboardArrowDown.default, null)), /*#__PURE__*/_react.default.createElement(_IconButton.default, {
56
56
  "data-testid": "zoom_out",
57
57
  onClick: function onClick() {
58
58
  model.zoom(bpPerPx * 2);
59
59
  },
60
60
  disabled: bpPerPx >= maxBpPerPx - 0.0001 || scaleFactor !== 1,
61
61
  color: "secondary"
62
- }, /*#__PURE__*/_react["default"].createElement(_ZoomOut["default"], null)), /*#__PURE__*/_react["default"].createElement(_IconButton["default"], {
62
+ }, /*#__PURE__*/_react.default.createElement(_ZoomOut.default, null)), /*#__PURE__*/_react.default.createElement(_IconButton.default, {
63
63
  "data-testid": "zoom_in",
64
64
  onClick: function onClick() {
65
65
  model.zoom(model.bpPerPx / 2);
66
66
  },
67
67
  disabled: bpPerPx <= minBpPerPx + 0.0001 || scaleFactor !== 1,
68
68
  color: "secondary"
69
- }, /*#__PURE__*/_react["default"].createElement(_ZoomIn["default"], null))), /*#__PURE__*/_react["default"].createElement(_Menu["default"], {
69
+ }, /*#__PURE__*/_react.default.createElement(_ZoomIn.default, null))), /*#__PURE__*/_react.default.createElement(_Menu.default, {
70
70
  anchorEl: anchorEl,
71
71
  open: Boolean(anchorEl),
72
72
  onMenuItemClick: function onMenuItemClick(_, callback) {
@@ -80,4 +80,4 @@ var MiniControls = (0, _mobxReact.observer)(function (props) {
80
80
  }));
81
81
  });
82
82
  var _default = MiniControls;
83
- exports["default"] = _default;
83
+ exports.default = _default;