@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.1

package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts

@@ -1,124 +1,132 @@
-import React from 'react';
-import { Instance } from 'mobx-state-tree';
-import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
-import { ContentBlock } from '@jbrowse/core/util/blockTypes';
-import { Assembly } from '@jbrowse/core/assemblyManager/assembly';
-import { LinearGenomeViewModel } from '..';
-declare const Polygon: ({ model, overview, useOffset, }: {
-    model: LGV;
-    overview: Instance<Base1DViewModel>;
-    useOffset?: boolean | undefined;
-}) => JSX.Element | null;
-declare type LGV = LinearGenomeViewModel;
-declare const Cytobands: ({ overview, block, assembly, }: {
-    overview: Base1DViewModel;
-    assembly?: (import("mobx-state-tree").ModelInstanceTypeProps<{
-        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    }> & {
-        error: Error | undefined;
-        regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-        refNameAliases: {
-            [key: string]: string;
-        } | undefined;
-        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-    } & {
-        readonly initialized: boolean;
-        readonly name: string;
-        readonly aliases: string[];
-        hasName(name: string): boolean;
-        readonly allAliases: string[];
-        readonly refNames: string[] | undefined;
-        readonly allRefNames: string[] | undefined;
-        readonly rpcManager: any;
-        readonly refNameColors: string[];
-    } & {
-        getCanonicalRefName(refName: string): string;
-        getRefNameColor(refName: string): string | undefined;
-        isValidRefName(refName: string): boolean;
-    } & {
-        setLoading(): void;
-        setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
-            adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
-            refNameAliases: Record<string, string>;
-            cytobands: import("@jbrowse/core/util").Feature[];
-        }): void;
-        setError(e: Error): void;
-        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setRefNameAliases(refNameAliases: Record<string, string>): void;
-        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-        afterAttach(): void;
-    } & {
-        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            forwardMap: {
-                [k: string]: string;
-            };
-            reverseMap: {
-                [k: string]: string;
-            };
-        }>;
-        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [k: string]: string;
-        }>;
-        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [k: string]: string;
-        }>;
-    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-    }, {
-        error: Error | undefined;
-        regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-        refNameAliases: {
-            [key: string]: string;
-        } | undefined;
-        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-    } & {
-        readonly initialized: boolean;
-        readonly name: string;
-        readonly aliases: string[];
-        hasName(name: string): boolean;
-        readonly allAliases: string[];
-        readonly refNames: string[] | undefined;
-        readonly allRefNames: string[] | undefined;
-        readonly rpcManager: any;
-        readonly refNameColors: string[];
-    } & {
-        getCanonicalRefName(refName: string): string;
-        getRefNameColor(refName: string): string | undefined;
-        isValidRefName(refName: string): boolean;
-    } & {
-        setLoading(): void;
-        setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
-            adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
-            refNameAliases: Record<string, string>;
-            cytobands: import("@jbrowse/core/util").Feature[];
-        }): void;
-        setError(e: Error): void;
-        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        setRefNameAliases(refNameAliases: Record<string, string>): void;
-        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-        afterAttach(): void;
-    } & {
-        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            forwardMap: {
-                [k: string]: string;
-            };
-            reverseMap: {
-                [k: string]: string;
-            };
-        }>;
-        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [k: string]: string;
-        }>;
-        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
-            [k: string]: string;
-        }>;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
-    block: ContentBlock;
-}) => JSX.Element | null;
-declare function OverviewScaleBar({ model, children, }: {
-    model: LGV;
-    children: React.ReactNode;
-}): JSX.Element;
-declare const _default: typeof OverviewScaleBar;
-export default _default;
-export { Cytobands, Polygon };
+import React from 'react';
+import { Instance } from 'mobx-state-tree';
+import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
+import { ContentBlock } from '@jbrowse/core/util/blockTypes';
+import { Assembly } from '@jbrowse/core/assemblyManager/assembly';
+import { LinearGenomeViewModel } from '..';
+declare const Polygon: ({ model, overview, useOffset, }: {
+    model: LGV;
+    overview: Instance<Base1DViewModel>;
+    useOffset?: boolean | undefined;
+}) => JSX.Element | null;
+declare type LGV = LinearGenomeViewModel;
+declare const Cytobands: ({ overview, block, assembly, }: {
+    overview: Base1DViewModel;
+    assembly?: (import("mobx-state-tree").ModelInstanceTypeProps<{
+        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+    }> & {
+        error: Error | undefined;
+        regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+        refNameAliases: {
+            [key: string]: string;
+        } | undefined;
+        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+    } & {
+        readonly initialized: boolean;
+        readonly name: string;
+        readonly aliases: string[];
+        hasName(name: string): boolean;
+        readonly allAliases: string[];
+        readonly refNames: string[] | undefined;
+        readonly allRefNames: string[] | undefined;
+        readonly rpcManager: any;
+        readonly refNameColors: string[];
+    } & {
+        getCanonicalRefName(refName: string): string;
+        getRefNameColor(refName: string): string | undefined;
+        isValidRefName(refName: string): boolean;
+    } & {
+        setLoading(): void;
+        setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
+            adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
+            refNameAliases: {
+                [x: string]: string;
+            };
+            cytobands: import("@jbrowse/core/util").Feature[];
+        }): void;
+        setError(e: Error): void;
+        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+        setRefNameAliases(refNameAliases: {
+            [x: string]: string;
+        }): void;
+        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+        afterAttach(): void;
+    } & {
+        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            forwardMap: {
+                [k: string]: string;
+            };
+            reverseMap: {
+                [k: string]: string;
+            };
+        }>;
+        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            [k: string]: string;
+        }>;
+        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            [k: string]: string;
+        }>;
+    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+    }, {
+        error: Error | undefined;
+        regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
+        refNameAliases: {
+            [key: string]: string;
+        } | undefined;
+        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
+    } & {
+        readonly initialized: boolean;
+        readonly name: string;
+        readonly aliases: string[];
+        hasName(name: string): boolean;
+        readonly allAliases: string[];
+        readonly refNames: string[] | undefined;
+        readonly allRefNames: string[] | undefined;
+        readonly rpcManager: any;
+        readonly refNameColors: string[];
+    } & {
+        getCanonicalRefName(refName: string): string;
+        getRefNameColor(refName: string): string | undefined;
+        isValidRefName(refName: string): boolean;
+    } & {
+        setLoading(): void;
+        setLoaded({ adapterRegionsWithAssembly, refNameAliases, cytobands, }: {
+            adapterRegionsWithAssembly: import("@jbrowse/core/util").Region[];
+            refNameAliases: {
+                [x: string]: string;
+            };
+            cytobands: import("@jbrowse/core/util").Feature[];
+        }): void;
+        setError(e: Error): void;
+        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
+        setRefNameAliases(refNameAliases: {
+            [x: string]: string;
+        }): void;
+        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
+        afterAttach(): void;
+    } & {
+        getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            forwardMap: {
+                [k: string]: string;
+            };
+            reverseMap: {
+                [k: string]: string;
+            };
+        }>;
+        getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            [k: string]: string;
+        }>;
+        getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
+            [k: string]: string;
+        }>;
+    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
+    block: ContentBlock;
+}) => JSX.Element | null;
+declare function OverviewScaleBar({ model, children, }: {
+    model: LGV;
+    children: React.ReactNode;
+}): JSX.Element;
+declare const _default: typeof OverviewScaleBar;
+export default _default;
+export { Cytobands, Polygon };

package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts

@@ -1,21 +1,21 @@
-import React from 'react';
-import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
-import { TextFieldProps as TFP } from '@material-ui/core';
-import { LinearGenomeViewModel } from '..';
-export interface Option {
-    group?: string;
-    result: BaseResult;
-}
-declare function RefNameAutocomplete({ model, showHelp, onSelect, assemblyName, style, fetchResults, value, minWidth, TextFieldProps, }: {
-    model: LinearGenomeViewModel;
-    onSelect: (region: BaseResult) => void;
-    assemblyName?: string;
-    value?: string;
-    fetchResults: (query: string) => Promise<BaseResult[]>;
-    style?: React.CSSProperties;
-    minWidth?: number;
-    showHelp?: boolean;
-    TextFieldProps?: TFP;
-}): JSX.Element;
-declare const _default: typeof RefNameAutocomplete;
-export default _default;
+import React from 'react';
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
+import { TextFieldProps as TFP } from '@material-ui/core';
+import { LinearGenomeViewModel } from '..';
+export interface Option {
+    group?: string;
+    result: BaseResult;
+}
+declare function RefNameAutocomplete({ model, showHelp, onSelect, assemblyName, style, fetchResults, value, minWidth, TextFieldProps, }: {
+    model: LinearGenomeViewModel;
+    onSelect: (region: BaseResult) => void;
+    assemblyName?: string;
+    value?: string;
+    fetchResults: (query: string) => Promise<BaseResult[]>;
+    style?: React.CSSProperties;
+    minWidth?: number;
+    showHelp?: boolean;
+    TextFieldProps?: TFP;
+}): JSX.Element;
+declare const _default: typeof RefNameAutocomplete;
+export default _default;

package/dist/LinearGenomeView/components/RubberBand.d.ts

@@ -1,20 +1,9 @@
-import React from 'react';
-import ReactPropTypes from 'prop-types';
-import { Instance } from 'mobx-state-tree';
-import { LinearGenomeViewStateModel } from '..';
-declare type LGV = Instance<LinearGenomeViewStateModel>;
-declare function RubberBand({ model, ControlComponent, }: {
-    model: LGV;
-    ControlComponent?: React.ReactElement;
-}): JSX.Element;
-declare namespace RubberBand {
-    var propTypes: {
-        model: ReactPropTypes.Validator<any>;
-        ControlComponent: ReactPropTypes.Requireable<ReactPropTypes.ReactNodeLike>;
-    };
-    var defaultProps: {
-        ControlComponent: JSX.Element;
-    };
-}
-declare const _default: typeof RubberBand;
-export default _default;
+import React from 'react';
+import { LinearGenomeViewModel } from '..';
+declare type LGV = LinearGenomeViewModel;
+declare function RubberBand({ model, ControlComponent, }: {
+    model: LGV;
+    ControlComponent?: React.ReactElement;
+}): JSX.Element;
+declare const _default: typeof RubberBand;
+export default _default;

package/dist/LinearGenomeView/components/Ruler.d.ts

@@ -1,27 +1,27 @@
-/// <reference types="react" />
-import ReactPropTypes from 'prop-types';
-declare function Ruler({ start, end, bpPerPx, reversed, major, minor, }: {
-    start: number;
-    end: number;
-    bpPerPx: number;
-    reversed?: boolean;
-    major: boolean;
-    minor: boolean;
-}): JSX.Element;
-declare namespace Ruler {
-    var propTypes: {
-        start: ReactPropTypes.Validator<number>;
-        end: ReactPropTypes.Validator<number>;
-        bpPerPx: ReactPropTypes.Validator<number>;
-        reversed: ReactPropTypes.Requireable<boolean>;
-        major: ReactPropTypes.Requireable<boolean>;
-        minor: ReactPropTypes.Requireable<boolean>;
-    };
-    var defaultProps: {
-        reversed: boolean;
-        major: boolean;
-        minor: boolean;
-    };
-}
-declare const _default: typeof Ruler;
-export default _default;
+/// <reference types="react" />
+import ReactPropTypes from 'prop-types';
+declare function Ruler({ start, end, bpPerPx, reversed, major, minor, }: {
+    start: number;
+    end: number;
+    bpPerPx: number;
+    reversed?: boolean;
+    major: boolean;
+    minor: boolean;
+}): JSX.Element;
+declare namespace Ruler {
+    var propTypes: {
+        start: ReactPropTypes.Validator<number>;
+        end: ReactPropTypes.Validator<number>;
+        bpPerPx: ReactPropTypes.Validator<number>;
+        reversed: ReactPropTypes.Requireable<boolean>;
+        major: ReactPropTypes.Requireable<boolean>;
+        minor: ReactPropTypes.Requireable<boolean>;
+    };
+    var defaultProps: {
+        reversed: boolean;
+        major: boolean;
+        minor: boolean;
+    };
+}
+declare const _default: typeof Ruler;
+export default _default;