@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (50) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
  2. package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
  3. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
  4. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
  5. package/dist/BaseLinearDisplay/index.d.ts +5 -5
  6. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
  7. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
  8. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
  9. package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
  10. package/dist/LinearBareDisplay/index.d.ts +2 -2
  11. package/dist/LinearBareDisplay/model.d.ts +192 -192
  12. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
  13. package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
  14. package/dist/LinearBasicDisplay/index.d.ts +2 -2
  15. package/dist/LinearBasicDisplay/model.d.ts +213 -213
  16. package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
  17. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
  18. package/dist/LinearGenomeView/components/Header.d.ts +7 -7
  19. package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
  20. package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
  21. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
  22. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
  23. package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
  24. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
  25. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
  26. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
  27. package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
  28. package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
  29. package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
  30. package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
  31. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
  32. package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
  33. package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
  34. package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
  35. package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
  36. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
  37. package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
  38. package/dist/LinearGenomeView/components/util.d.ts +2 -2
  39. package/dist/LinearGenomeView/index.d.ts +292 -292
  40. package/dist/LinearGenomeView/util.d.ts +14 -14
  41. package/dist/index.d.ts +565 -565
  42. package/package.json +4 -3
  43. package/dist/LinearBareDisplay/index.test.d.ts +0 -1
  44. package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
  45. package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
  46. package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
  47. package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
  48. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
  49. package/dist/plugin-linear-genome-view.esm.js +0 -8105
  50. package/dist/plugin-linear-genome-view.esm.js.map +0 -1
@@ -1,96 +1,96 @@
1
- import { Instance } from 'mobx-state-tree';
2
- import { Feature } from '@jbrowse/core/util/simpleFeature';
3
- import { AbstractDisplayModel } from '@jbrowse/core/util/types';
4
- import React from 'react';
5
- declare const blockState: import("mobx-state-tree").IModelType<{
6
- key: import("mobx-state-tree").ISimpleType<string>;
7
- region: import("mobx-state-tree").IModelType<{
8
- refName: import("mobx-state-tree").ISimpleType<string>;
9
- start: import("mobx-state-tree").ISimpleType<number>;
10
- end: import("mobx-state-tree").ISimpleType<number>;
11
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12
- } & {
13
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
14
- }, {
15
- setRefName(newRefName: string): void;
16
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
17
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
18
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
19
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
20
- }, {
21
- renderInProgress: AbortController | undefined;
22
- filled: boolean;
23
- reactElement: React.ReactElement<any, string | ((props: any) => React.ReactElement<any, any> | null) | (new (props: any) => React.Component<any, any, any>)> | undefined;
24
- features: Map<string, Feature> | undefined;
25
- layout: any;
26
- status: string;
27
- error: unknown;
28
- message: string | undefined;
29
- maxHeightReached: boolean;
30
- ReactComponent: ({ model, }: {
31
- model: any;
32
- }) => any;
33
- renderProps: any;
34
- } & {
35
- doReload(): void;
36
- afterAttach(): void;
37
- setStatus(message: string): void;
38
- setLoading(abortController: AbortController): void;
39
- setMessage(messageText: string): void;
40
- setRendered(props: {
41
- reactElement: React.ReactElement;
42
- features: Map<string, Feature>;
43
- layout: any;
44
- maxHeightReached: boolean;
45
- renderProps: any;
46
- } | undefined): void;
47
- setError(error: Error | unknown): void;
48
- reload(): void;
49
- beforeDestroy(): void;
50
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
51
- export default blockState;
52
- export declare type BlockStateModel = typeof blockState;
53
- export declare type BlockModel = Instance<BlockStateModel>;
54
- export declare function renderBlockData(self: Instance<BlockStateModel>, optDisplay?: AbstractDisplayModel): {
55
- rendererType: any;
56
- rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
57
- renderProps: any;
58
- cannotBeRenderedReason: any;
59
- displayError: any;
60
- renderArgs: {
61
- statusCallback: (message: string) => void;
62
- assemblyName: string;
63
- regions: (import("mobx-state-tree").ModelInstanceTypeProps<{
64
- refName: import("mobx-state-tree").ISimpleType<string>;
65
- start: import("mobx-state-tree").ISimpleType<number>;
66
- end: import("mobx-state-tree").ISimpleType<number>;
67
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
68
- } & {
69
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
70
- }> & {
71
- setRefName(newRefName: string): void;
72
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
73
- refName: import("mobx-state-tree").ISimpleType<string>;
74
- start: import("mobx-state-tree").ISimpleType<number>;
75
- end: import("mobx-state-tree").ISimpleType<number>;
76
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
77
- } & {
78
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
79
- }, {
80
- setRefName(newRefName: string): void;
81
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
82
- adapterConfig: any;
83
- rendererType: any;
84
- sessionId: string;
85
- blockKey: string;
86
- reloadFlag: number;
87
- timeout: number;
88
- };
89
- } | {
90
- displayError: any;
91
- rendererType?: undefined;
92
- rpcManager?: undefined;
93
- renderProps?: undefined;
94
- cannotBeRenderedReason?: undefined;
95
- renderArgs?: undefined;
96
- };
1
+ import React from 'react';
2
+ import { Instance } from 'mobx-state-tree';
3
+ import { Feature } from '@jbrowse/core/util';
4
+ import { AbstractDisplayModel } from '@jbrowse/core/util/types';
5
+ declare const blockState: import("mobx-state-tree").IModelType<{
6
+ key: import("mobx-state-tree").ISimpleType<string>;
7
+ region: import("mobx-state-tree").IModelType<{
8
+ refName: import("mobx-state-tree").ISimpleType<string>;
9
+ start: import("mobx-state-tree").ISimpleType<number>;
10
+ end: import("mobx-state-tree").ISimpleType<number>;
11
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
12
+ } & {
13
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
14
+ }, {
15
+ setRefName(newRefName: string): void;
16
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
17
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
18
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
19
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
20
+ }, {
21
+ renderInProgress: AbortController | undefined;
22
+ filled: boolean;
23
+ reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
24
+ features: Map<string, Feature> | undefined;
25
+ layout: any;
26
+ status: string;
27
+ error: unknown;
28
+ message: string | undefined;
29
+ maxHeightReached: boolean;
30
+ ReactComponent: ({ model, }: {
31
+ model: any;
32
+ }) => any;
33
+ renderProps: any;
34
+ } & {
35
+ doReload(): void;
36
+ afterAttach(): void;
37
+ setStatus(message: string): void;
38
+ setLoading(abortController: AbortController): void;
39
+ setMessage(messageText: string): void;
40
+ setRendered(props: {
41
+ reactElement: React.ReactElement;
42
+ features: Map<string, Feature>;
43
+ layout: any;
44
+ maxHeightReached: boolean;
45
+ renderProps: any;
46
+ } | undefined): void;
47
+ setError(error: Error | unknown): void;
48
+ reload(): void;
49
+ beforeDestroy(): void;
50
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
51
+ export default blockState;
52
+ export declare type BlockStateModel = typeof blockState;
53
+ export declare type BlockModel = Instance<BlockStateModel>;
54
+ export declare function renderBlockData(self: Instance<BlockStateModel>, optDisplay?: AbstractDisplayModel): {
55
+ rendererType: any;
56
+ rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
57
+ renderProps: any;
58
+ cannotBeRenderedReason: any;
59
+ displayError: any;
60
+ renderArgs: {
61
+ statusCallback: (message: string) => void;
62
+ assemblyName: string;
63
+ regions: (import("mobx-state-tree").ModelInstanceTypeProps<{
64
+ refName: import("mobx-state-tree").ISimpleType<string>;
65
+ start: import("mobx-state-tree").ISimpleType<number>;
66
+ end: import("mobx-state-tree").ISimpleType<number>;
67
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
68
+ } & {
69
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
70
+ }> & {
71
+ setRefName(newRefName: string): void;
72
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
73
+ refName: import("mobx-state-tree").ISimpleType<string>;
74
+ start: import("mobx-state-tree").ISimpleType<number>;
75
+ end: import("mobx-state-tree").ISimpleType<number>;
76
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
77
+ } & {
78
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
79
+ }, {
80
+ setRefName(newRefName: string): void;
81
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
82
+ adapterConfig: any;
83
+ rendererType: any;
84
+ sessionId: string;
85
+ blockKey: string;
86
+ reloadFlag: number;
87
+ timeout: number;
88
+ };
89
+ } | {
90
+ displayError: unknown;
91
+ rendererType?: undefined;
92
+ rpcManager?: undefined;
93
+ renderProps?: undefined;
94
+ cannotBeRenderedReason?: undefined;
95
+ renderArgs?: undefined;
96
+ };
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
2
- export declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ export declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
@@ -1,2 +1,2 @@
1
- export { configSchemaFactory } from './configSchema';
2
- export { stateModelFactory } from './model';
1
+ export { configSchemaFactory } from './configSchema';
2
+ export { stateModelFactory } from './model';
@@ -1,192 +1,192 @@
1
- /// <reference types="react" />
2
- import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
3
- export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
4
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
- type: import("mobx-state-tree").ISimpleType<string>;
6
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
7
- } & {
8
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
9
- blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
10
- key: import("mobx-state-tree").ISimpleType<string>;
11
- region: import("mobx-state-tree").IModelType<{
12
- refName: import("mobx-state-tree").ISimpleType<string>;
13
- start: import("mobx-state-tree").ISimpleType<number>;
14
- end: import("mobx-state-tree").ISimpleType<number>;
15
- reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16
- } & {
17
- assemblyName: import("mobx-state-tree").ISimpleType<string>;
18
- }, {
19
- setRefName(newRefName: string): void;
20
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
21
- reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
22
- isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
23
- isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
24
- }, {
25
- renderInProgress: AbortController | undefined;
26
- filled: boolean;
27
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)> | undefined;
28
- features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
29
- layout: any;
30
- status: string;
31
- error: unknown;
32
- message: string | undefined;
33
- maxHeightReached: boolean;
34
- ReactComponent: ({ model, }: {
35
- model: any;
36
- }) => any;
37
- renderProps: any;
38
- } & {
39
- doReload(): void;
40
- afterAttach(): void;
41
- setStatus(message: string): void;
42
- setLoading(abortController: AbortController): void;
43
- setMessage(messageText: string): void;
44
- setRendered(props: {
45
- reactElement: import("react").ReactElement<any, string | ((props: any) => import("react").ReactElement<any, any> | null) | (new (props: any) => import("react").Component<any, any, any>)>;
46
- features: Map<string, import("@jbrowse/core/util").Feature>;
47
- layout: any;
48
- maxHeightReached: boolean;
49
- renderProps: any;
50
- } | undefined): void;
51
- setError(error: unknown): void;
52
- reload(): void;
53
- beforeDestroy(): void;
54
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
55
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
56
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
57
- } & {
58
- type: import("mobx-state-tree").ISimpleType<"LinearBareDisplay">;
59
- configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
60
- }, {
61
- rendererTypeName: string;
62
- error: unknown;
63
- } & {
64
- readonly RenderingComponent: import("react").FC<{
65
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
66
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
67
- type: import("mobx-state-tree").ISimpleType<string>;
68
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
69
- }> & {
70
- rendererTypeName: string;
71
- error: unknown;
72
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
73
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
74
- type: import("mobx-state-tree").ISimpleType<string>;
75
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
76
- }, {
77
- rendererTypeName: string;
78
- error: unknown;
79
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
80
- onHorizontalScroll?: Function | undefined;
81
- blockState?: Record<string, any> | undefined;
82
- }>;
83
- readonly DisplayBlurb: import("react").FC<{
84
- model: import("mobx-state-tree").ModelInstanceTypeProps<{
85
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
86
- type: import("mobx-state-tree").ISimpleType<string>;
87
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
88
- }> & {
89
- rendererTypeName: string;
90
- error: unknown;
91
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
92
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
93
- type: import("mobx-state-tree").ISimpleType<string>;
94
- rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
95
- }, {
96
- rendererTypeName: string;
97
- error: unknown;
98
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
99
- }> | null;
100
- readonly adapterConfig: any;
101
- readonly parentTrack: any;
102
- renderProps(): any;
103
- readonly rendererType: any;
104
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
105
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
106
- readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
107
- regionCannotBeRendered(): undefined;
108
- } & {
109
- setError(error?: unknown): void;
110
- setRpcDriverName(rpcDriverName: string): void;
111
- reload(): void;
112
- } & {
113
- currBpPerPx: number;
114
- message: string;
115
- featureIdUnderMouse: string | undefined;
116
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
117
- scrollTop: number;
118
- estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
119
- estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
120
- } & {
121
- readonly blockType: "staticBlocks" | "dynamicBlocks";
122
- readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
123
- } & {
124
- readonly renderDelay: number;
125
- readonly TooltipComponent: import("react").FC<any>;
126
- readonly selectedFeatureId: string | undefined;
127
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
128
- } & {
129
- readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
130
- readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
131
- getFeatureOverlapping(blockKey: string, x: number, y: number): any;
132
- getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
133
- searchFeatureByID(id: string): [number, number, number, number] | undefined;
134
- readonly currentBytesRequested: number;
135
- readonly currentFeatureScreenDensity: number;
136
- readonly maxFeatureScreenDensity: any;
137
- readonly estimatedStatsReady: boolean;
138
- readonly maxAllowableBytes: number;
139
- } & {
140
- setMessage(message: string): void;
141
- afterAttach(): void;
142
- estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
143
- headers?: Record<string, string> | undefined;
144
- signal?: AbortSignal | undefined;
145
- filters?: string[] | undefined;
146
- }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
147
- setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
148
- setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
149
- clearRegionStats(): void;
150
- setHeight(displayHeight: number): number;
151
- resizeHeight(distance: number): number;
152
- setScrollTop(scrollTop: number): void;
153
- updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
154
- addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
155
- setCurrBpPerPx(n: number): void;
156
- deleteBlock(key: string): void;
157
- selectFeature(feature: import("@jbrowse/core/util").Feature): void;
158
- clearFeatureSelection(): void;
159
- setFeatureIdUnderMouse(feature: string | undefined): void;
160
- reload(): void;
161
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
162
- } & {
163
- readonly regionTooLarge: boolean;
164
- readonly regionTooLargeReason: string;
165
- } & {
166
- reload(): Promise<void>;
167
- afterAttach(): void;
168
- } & {
169
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
170
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
171
- trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
172
- contextMenuItems(): {
173
- label: string;
174
- icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
175
- onClick: () => void;
176
- }[];
177
- renderProps(): any;
178
- } & {
179
- renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
180
- overrideHeight: number;
181
- }): Promise<JSX.Element>;
182
- } & {
183
- renderProps(): any;
184
- readonly rendererTypeName: any;
185
- }, import("mobx-state-tree")._NotCustomized, {
186
- id: string;
187
- type: string;
188
- rpcDriverName: string | undefined;
189
- height: number;
190
- userBpPerPxLimit: number | undefined;
191
- userByteSizeLimit: number | undefined;
192
- } & import("mobx-state-tree")._NotCustomized>;
1
+ /// <reference types="react" />
2
+ import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
3
+ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
4
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
5
+ type: import("mobx-state-tree").ISimpleType<string>;
6
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
7
+ } & {
8
+ height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
9
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
10
+ key: import("mobx-state-tree").ISimpleType<string>;
11
+ region: import("mobx-state-tree").IModelType<{
12
+ refName: import("mobx-state-tree").ISimpleType<string>;
13
+ start: import("mobx-state-tree").ISimpleType<number>;
14
+ end: import("mobx-state-tree").ISimpleType<number>;
15
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
16
+ } & {
17
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
18
+ }, {
19
+ setRefName(newRefName: string): void;
20
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
21
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
22
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
23
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
24
+ }, {
25
+ renderInProgress: AbortController | undefined;
26
+ filled: boolean;
27
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
28
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
29
+ layout: any;
30
+ status: string;
31
+ error: unknown;
32
+ message: string | undefined;
33
+ maxHeightReached: boolean;
34
+ ReactComponent: ({ model, }: {
35
+ model: any;
36
+ }) => any;
37
+ renderProps: any;
38
+ } & {
39
+ doReload(): void;
40
+ afterAttach(): void;
41
+ setStatus(message: string): void;
42
+ setLoading(abortController: AbortController): void;
43
+ setMessage(messageText: string): void;
44
+ setRendered(props: {
45
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
46
+ features: Map<string, import("@jbrowse/core/util").Feature>;
47
+ layout: any;
48
+ maxHeightReached: boolean;
49
+ renderProps: any;
50
+ } | undefined): void;
51
+ setError(error: unknown): void;
52
+ reload(): void;
53
+ beforeDestroy(): void;
54
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
55
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
56
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
57
+ } & {
58
+ type: import("mobx-state-tree").ISimpleType<"LinearBareDisplay">;
59
+ configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
60
+ }, {
61
+ rendererTypeName: string;
62
+ error: unknown;
63
+ } & {
64
+ readonly RenderingComponent: import("react").FC<{
65
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
66
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
67
+ type: import("mobx-state-tree").ISimpleType<string>;
68
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
69
+ }> & {
70
+ rendererTypeName: string;
71
+ error: unknown;
72
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
73
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
74
+ type: import("mobx-state-tree").ISimpleType<string>;
75
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
76
+ }, {
77
+ rendererTypeName: string;
78
+ error: unknown;
79
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
80
+ onHorizontalScroll?: Function | undefined;
81
+ blockState?: Record<string, any> | undefined;
82
+ }>;
83
+ readonly DisplayBlurb: import("react").FC<{
84
+ model: import("mobx-state-tree").ModelInstanceTypeProps<{
85
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
86
+ type: import("mobx-state-tree").ISimpleType<string>;
87
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
88
+ }> & {
89
+ rendererTypeName: string;
90
+ error: unknown;
91
+ } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
92
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
93
+ type: import("mobx-state-tree").ISimpleType<string>;
94
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
95
+ }, {
96
+ rendererTypeName: string;
97
+ error: unknown;
98
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
99
+ }> | null;
100
+ readonly adapterConfig: any;
101
+ readonly parentTrack: any;
102
+ renderProps(): any;
103
+ readonly rendererType: any;
104
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
105
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
106
+ readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
107
+ regionCannotBeRendered(): undefined;
108
+ } & {
109
+ setError(error?: unknown): void;
110
+ setRpcDriverName(rpcDriverName: string): void;
111
+ reload(): void;
112
+ } & {
113
+ currBpPerPx: number;
114
+ message: string;
115
+ featureIdUnderMouse: string | undefined;
116
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
117
+ scrollTop: number;
118
+ estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
119
+ estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
120
+ } & {
121
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
122
+ readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
123
+ } & {
124
+ readonly renderDelay: number;
125
+ readonly TooltipComponent: import("react").FC<any>;
126
+ readonly selectedFeatureId: string | undefined;
127
+ readonly DisplayMessageComponent: import("react").FC<any> | undefined;
128
+ } & {
129
+ readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
130
+ readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
131
+ getFeatureOverlapping(blockKey: string, x: number, y: number): any;
132
+ getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
133
+ searchFeatureByID(id: string): [number, number, number, number] | undefined;
134
+ readonly currentBytesRequested: number;
135
+ readonly currentFeatureScreenDensity: number;
136
+ readonly maxFeatureScreenDensity: any;
137
+ readonly estimatedStatsReady: boolean;
138
+ readonly maxAllowableBytes: number;
139
+ } & {
140
+ setMessage(message: string): void;
141
+ afterAttach(): void;
142
+ estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
143
+ headers?: Record<string, string> | undefined;
144
+ signal?: AbortSignal | undefined;
145
+ filters?: string[] | undefined;
146
+ }): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
147
+ setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
148
+ setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
149
+ clearRegionStats(): void;
150
+ setHeight(displayHeight: number): number;
151
+ resizeHeight(distance: number): number;
152
+ setScrollTop(scrollTop: number): void;
153
+ updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
154
+ addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
155
+ setCurrBpPerPx(n: number): void;
156
+ deleteBlock(key: string): void;
157
+ selectFeature(feature: import("@jbrowse/core/util").Feature): void;
158
+ clearFeatureSelection(): void;
159
+ setFeatureIdUnderMouse(feature: string | undefined): void;
160
+ reload(): void;
161
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
162
+ } & {
163
+ readonly regionTooLarge: boolean;
164
+ readonly regionTooLargeReason: string;
165
+ } & {
166
+ reload(): Promise<void>;
167
+ afterAttach(): void;
168
+ } & {
169
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
170
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
171
+ trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
172
+ contextMenuItems(): {
173
+ label: string;
174
+ icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
175
+ onClick: () => void;
176
+ }[];
177
+ renderProps(): any;
178
+ } & {
179
+ renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
180
+ overrideHeight: number;
181
+ }): Promise<JSX.Element>;
182
+ } & {
183
+ renderProps(): any;
184
+ readonly rendererTypeName: any;
185
+ }, import("mobx-state-tree")._NotCustomized, {
186
+ id: string;
187
+ type: string;
188
+ rpcDriverName: string | undefined;
189
+ height: number;
190
+ userBpPerPxLimit: number | undefined;
191
+ userByteSizeLimit: number | undefined;
192
+ } & import("mobx-state-tree")._NotCustomized>;
@@ -1,10 +1,10 @@
1
- /// <reference types="react" />
2
- declare function SetMaxHeightDlg(props: {
3
- model: {
4
- maxHeight?: number;
5
- setMaxHeight: Function;
6
- };
7
- handleClose: () => void;
8
- }): JSX.Element;
9
- declare const _default: typeof SetMaxHeightDlg;
10
- export default _default;
1
+ /// <reference types="react" />
2
+ declare function SetMaxHeightDlg(props: {
3
+ model: {
4
+ maxHeight?: number;
5
+ setMaxHeight: Function;
6
+ };
7
+ handleClose: () => void;
8
+ }): JSX.Element;
9
+ declare const _default: typeof SetMaxHeightDlg;
10
+ export default _default;
@@ -1,2 +1,2 @@
1
- import PluginManager from '@jbrowse/core/PluginManager';
2
- export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
1
+ import PluginManager from '@jbrowse/core/PluginManager';
2
+ export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
@@ -1,2 +1,2 @@
1
- export { default as modelFactory } from './model';
2
- export { default as configSchema } from './configSchema';
1
+ export { default as modelFactory } from './model';
2
+ export { default as configSchema } from './configSchema';