@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
- package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
- package/dist/BaseLinearDisplay/index.d.ts +5 -5
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
- package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
- package/dist/LinearBareDisplay/index.d.ts +2 -2
- package/dist/LinearBareDisplay/model.d.ts +192 -192
- package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
- package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
- package/dist/LinearBasicDisplay/index.d.ts +2 -2
- package/dist/LinearBasicDisplay/model.d.ts +213 -213
- package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
- package/dist/LinearGenomeView/components/Header.d.ts +7 -7
- package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
- package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
- package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
- package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
- package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
- package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
- package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
- package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
- package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
- package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
- package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
- package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
- package/dist/LinearGenomeView/components/util.d.ts +2 -2
- package/dist/LinearGenomeView/index.d.ts +292 -292
- package/dist/LinearGenomeView/util.d.ts +14 -14
- package/dist/index.d.ts +565 -565
- package/package.json +4 -3
- package/dist/LinearBareDisplay/index.test.d.ts +0 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
- package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
- package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
- package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
- package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
- package/dist/plugin-linear-genome-view.esm.js +0 -8105
- package/dist/plugin-linear-genome-view.esm.js.map +0 -1
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import {
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import {
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import
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declare const blockState: import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: React.ReactElement<any, string |
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features: Map<string, Feature> | undefined;
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doReload(): void;
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afterAttach(): void;
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setStatus(message: string): void;
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setLoading(abortController: AbortController): void;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: React.ReactElement;
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features: Map<string, Feature>;
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layout: any;
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maxHeightReached: boolean;
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renderProps: any;
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setError(error: Error | unknown): void;
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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export default blockState;
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export declare type BlockStateModel = typeof blockState;
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export declare type BlockModel = Instance<BlockStateModel>;
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export declare function renderBlockData(self: Instance<BlockStateModel>, optDisplay?: AbstractDisplayModel): {
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rendererType: any;
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rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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renderProps: any;
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cannotBeRenderedReason: any;
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renderArgs: {
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statusCallback: (message: string) => void;
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assemblyName: string;
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regions: (import("mobx-state-tree").ModelInstanceTypeProps<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}> & {
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setRefName(newRefName: string): void;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
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adapterConfig: any;
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reloadFlag: number;
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};
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rpcManager?: undefined;
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renderArgs?: undefined;
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};
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import React from 'react';
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import { Instance } from 'mobx-state-tree';
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import { Feature } from '@jbrowse/core/util';
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import { AbstractDisplayModel } from '@jbrowse/core/util/types';
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declare const blockState: import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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features: Map<string, Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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message: string | undefined;
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maxHeightReached: boolean;
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ReactComponent: ({ model, }: {
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model: any;
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}) => any;
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renderProps: any;
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} & {
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doReload(): void;
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afterAttach(): void;
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setStatus(message: string): void;
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setLoading(abortController: AbortController): void;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: React.ReactElement;
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features: Map<string, Feature>;
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layout: any;
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maxHeightReached: boolean;
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renderProps: any;
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} | undefined): void;
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setError(error: Error | unknown): void;
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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export default blockState;
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export declare type BlockStateModel = typeof blockState;
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export declare type BlockModel = Instance<BlockStateModel>;
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export declare function renderBlockData(self: Instance<BlockStateModel>, optDisplay?: AbstractDisplayModel): {
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rendererType: any;
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rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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renderProps: any;
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cannotBeRenderedReason: any;
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displayError: any;
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renderArgs: {
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statusCallback: (message: string) => void;
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assemblyName: string;
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regions: (import("mobx-state-tree").ModelInstanceTypeProps<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}> & {
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setRefName(newRefName: string): void;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
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adapterConfig: any;
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rendererType: any;
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sessionId: string;
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blockKey: string;
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reloadFlag: number;
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timeout: number;
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};
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} | {
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displayError: unknown;
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rendererType?: undefined;
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rpcManager?: undefined;
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renderProps?: undefined;
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cannotBeRenderedReason?: undefined;
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renderArgs?: undefined;
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};
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import PluginManager from '@jbrowse/core/PluginManager';
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export declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
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export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: import("react").ReactElement<any, string |
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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layout: any;
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error: unknown;
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message: string | undefined;
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maxHeightReached: boolean;
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ReactComponent: ({ model, }: {
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model: any;
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}) => any;
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setStatus(message: string): void;
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setLoading(abortController: AbortController): void;
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features: Map<string, import("@jbrowse/core/util").Feature>;
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} | undefined): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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type: import("mobx-state-tree").ISimpleType<"LinearBareDisplay">;
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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error: unknown;
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}>;
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readonly DisplayBlurb: import("react").FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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readonly rendererType: any;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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regionCannotBeRendered(): undefined;
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} & {
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setError(error?: unknown): void;
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reload(): void;
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} & {
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currBpPerPx: number;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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scrollTop: number;
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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} & {
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readonly blockType: "staticBlocks" | "dynamicBlocks";
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
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} & {
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readonly renderDelay: number;
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readonly TooltipComponent: import("react").FC<any>;
|
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|
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readonly selectedFeatureId: string | undefined;
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|
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
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|
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} & {
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|
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
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|
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
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|
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
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|
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
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|
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
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|
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readonly currentBytesRequested: number;
|
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|
-
readonly currentFeatureScreenDensity: number;
|
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|
-
readonly maxFeatureScreenDensity: any;
|
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|
-
readonly estimatedStatsReady: boolean;
|
|
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|
-
readonly maxAllowableBytes: number;
|
|
139
|
-
} & {
|
|
140
|
-
setMessage(message: string): void;
|
|
141
|
-
afterAttach(): void;
|
|
142
|
-
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
143
|
-
headers?: Record<string, string> | undefined;
|
|
144
|
-
signal?: AbortSignal | undefined;
|
|
145
|
-
filters?: string[] | undefined;
|
|
146
|
-
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
147
|
-
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
148
|
-
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
149
|
-
clearRegionStats(): void;
|
|
150
|
-
setHeight(displayHeight: number): number;
|
|
151
|
-
resizeHeight(distance: number): number;
|
|
152
|
-
setScrollTop(scrollTop: number): void;
|
|
153
|
-
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
154
|
-
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
155
|
-
setCurrBpPerPx(n: number): void;
|
|
156
|
-
deleteBlock(key: string): void;
|
|
157
|
-
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
158
|
-
clearFeatureSelection(): void;
|
|
159
|
-
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
160
|
-
reload(): void;
|
|
161
|
-
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
162
|
-
} & {
|
|
163
|
-
readonly regionTooLarge: boolean;
|
|
164
|
-
readonly regionTooLargeReason: string;
|
|
165
|
-
} & {
|
|
166
|
-
reload(): Promise<void>;
|
|
167
|
-
afterAttach(): void;
|
|
168
|
-
} & {
|
|
169
|
-
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
170
|
-
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
171
|
-
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
172
|
-
contextMenuItems(): {
|
|
173
|
-
label: string;
|
|
174
|
-
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
175
|
-
onClick: () => void;
|
|
176
|
-
}[];
|
|
177
|
-
renderProps(): any;
|
|
178
|
-
} & {
|
|
179
|
-
renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
|
|
180
|
-
overrideHeight: number;
|
|
181
|
-
}): Promise<JSX.Element>;
|
|
182
|
-
} & {
|
|
183
|
-
renderProps(): any;
|
|
184
|
-
readonly rendererTypeName: any;
|
|
185
|
-
}, import("mobx-state-tree")._NotCustomized, {
|
|
186
|
-
id: string;
|
|
187
|
-
type: string;
|
|
188
|
-
rpcDriverName: string | undefined;
|
|
189
|
-
height: number;
|
|
190
|
-
userBpPerPxLimit: number | undefined;
|
|
191
|
-
userByteSizeLimit: number | undefined;
|
|
192
|
-
} & import("mobx-state-tree")._NotCustomized>;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration/configurationSchema';
|
|
3
|
+
export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
|
|
4
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
5
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
6
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
7
|
+
} & {
|
|
8
|
+
height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
|
|
9
|
+
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
10
|
+
key: import("mobx-state-tree").ISimpleType<string>;
|
|
11
|
+
region: import("mobx-state-tree").IModelType<{
|
|
12
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
|
13
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
|
14
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
|
15
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
16
|
+
} & {
|
|
17
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
|
18
|
+
}, {
|
|
19
|
+
setRefName(newRefName: string): void;
|
|
20
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
21
|
+
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
|
22
|
+
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
23
|
+
isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
24
|
+
}, {
|
|
25
|
+
renderInProgress: AbortController | undefined;
|
|
26
|
+
filled: boolean;
|
|
27
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
|
28
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
|
29
|
+
layout: any;
|
|
30
|
+
status: string;
|
|
31
|
+
error: unknown;
|
|
32
|
+
message: string | undefined;
|
|
33
|
+
maxHeightReached: boolean;
|
|
34
|
+
ReactComponent: ({ model, }: {
|
|
35
|
+
model: any;
|
|
36
|
+
}) => any;
|
|
37
|
+
renderProps: any;
|
|
38
|
+
} & {
|
|
39
|
+
doReload(): void;
|
|
40
|
+
afterAttach(): void;
|
|
41
|
+
setStatus(message: string): void;
|
|
42
|
+
setLoading(abortController: AbortController): void;
|
|
43
|
+
setMessage(messageText: string): void;
|
|
44
|
+
setRendered(props: {
|
|
45
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
|
46
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
|
47
|
+
layout: any;
|
|
48
|
+
maxHeightReached: boolean;
|
|
49
|
+
renderProps: any;
|
|
50
|
+
} | undefined): void;
|
|
51
|
+
setError(error: unknown): void;
|
|
52
|
+
reload(): void;
|
|
53
|
+
beforeDestroy(): void;
|
|
54
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
55
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
56
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
57
|
+
} & {
|
|
58
|
+
type: import("mobx-state-tree").ISimpleType<"LinearBareDisplay">;
|
|
59
|
+
configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
|
|
60
|
+
}, {
|
|
61
|
+
rendererTypeName: string;
|
|
62
|
+
error: unknown;
|
|
63
|
+
} & {
|
|
64
|
+
readonly RenderingComponent: import("react").FC<{
|
|
65
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
66
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
67
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
68
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
69
|
+
}> & {
|
|
70
|
+
rendererTypeName: string;
|
|
71
|
+
error: unknown;
|
|
72
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
73
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
74
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
75
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
76
|
+
}, {
|
|
77
|
+
rendererTypeName: string;
|
|
78
|
+
error: unknown;
|
|
79
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
80
|
+
onHorizontalScroll?: Function | undefined;
|
|
81
|
+
blockState?: Record<string, any> | undefined;
|
|
82
|
+
}>;
|
|
83
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
84
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
85
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
86
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
87
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
88
|
+
}> & {
|
|
89
|
+
rendererTypeName: string;
|
|
90
|
+
error: unknown;
|
|
91
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
92
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
93
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
94
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
95
|
+
}, {
|
|
96
|
+
rendererTypeName: string;
|
|
97
|
+
error: unknown;
|
|
98
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
99
|
+
}> | null;
|
|
100
|
+
readonly adapterConfig: any;
|
|
101
|
+
readonly parentTrack: any;
|
|
102
|
+
renderProps(): any;
|
|
103
|
+
readonly rendererType: any;
|
|
104
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
105
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
106
|
+
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
107
|
+
regionCannotBeRendered(): undefined;
|
|
108
|
+
} & {
|
|
109
|
+
setError(error?: unknown): void;
|
|
110
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
111
|
+
reload(): void;
|
|
112
|
+
} & {
|
|
113
|
+
currBpPerPx: number;
|
|
114
|
+
message: string;
|
|
115
|
+
featureIdUnderMouse: string | undefined;
|
|
116
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
117
|
+
scrollTop: number;
|
|
118
|
+
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
119
|
+
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
120
|
+
} & {
|
|
121
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
122
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
123
|
+
} & {
|
|
124
|
+
readonly renderDelay: number;
|
|
125
|
+
readonly TooltipComponent: import("react").FC<any>;
|
|
126
|
+
readonly selectedFeatureId: string | undefined;
|
|
127
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
128
|
+
} & {
|
|
129
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
130
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
131
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
132
|
+
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
133
|
+
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
134
|
+
readonly currentBytesRequested: number;
|
|
135
|
+
readonly currentFeatureScreenDensity: number;
|
|
136
|
+
readonly maxFeatureScreenDensity: any;
|
|
137
|
+
readonly estimatedStatsReady: boolean;
|
|
138
|
+
readonly maxAllowableBytes: number;
|
|
139
|
+
} & {
|
|
140
|
+
setMessage(message: string): void;
|
|
141
|
+
afterAttach(): void;
|
|
142
|
+
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
143
|
+
headers?: Record<string, string> | undefined;
|
|
144
|
+
signal?: AbortSignal | undefined;
|
|
145
|
+
filters?: string[] | undefined;
|
|
146
|
+
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
147
|
+
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
148
|
+
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
149
|
+
clearRegionStats(): void;
|
|
150
|
+
setHeight(displayHeight: number): number;
|
|
151
|
+
resizeHeight(distance: number): number;
|
|
152
|
+
setScrollTop(scrollTop: number): void;
|
|
153
|
+
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
154
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
155
|
+
setCurrBpPerPx(n: number): void;
|
|
156
|
+
deleteBlock(key: string): void;
|
|
157
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
158
|
+
clearFeatureSelection(): void;
|
|
159
|
+
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
160
|
+
reload(): void;
|
|
161
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
162
|
+
} & {
|
|
163
|
+
readonly regionTooLarge: boolean;
|
|
164
|
+
readonly regionTooLargeReason: string;
|
|
165
|
+
} & {
|
|
166
|
+
reload(): Promise<void>;
|
|
167
|
+
afterAttach(): void;
|
|
168
|
+
} & {
|
|
169
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
170
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
171
|
+
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
172
|
+
contextMenuItems(): {
|
|
173
|
+
label: string;
|
|
174
|
+
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
175
|
+
onClick: () => void;
|
|
176
|
+
}[];
|
|
177
|
+
renderProps(): any;
|
|
178
|
+
} & {
|
|
179
|
+
renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
|
|
180
|
+
overrideHeight: number;
|
|
181
|
+
}): Promise<JSX.Element>;
|
|
182
|
+
} & {
|
|
183
|
+
renderProps(): any;
|
|
184
|
+
readonly rendererTypeName: any;
|
|
185
|
+
}, import("mobx-state-tree")._NotCustomized, {
|
|
186
|
+
id: string;
|
|
187
|
+
type: string;
|
|
188
|
+
rpcDriverName: string | undefined;
|
|
189
|
+
height: number;
|
|
190
|
+
userBpPerPxLimit: number | undefined;
|
|
191
|
+
userByteSizeLimit: number | undefined;
|
|
192
|
+
} & import("mobx-state-tree")._NotCustomized>;
|
|
@@ -1,10 +1,10 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
declare function SetMaxHeightDlg(props: {
|
|
3
|
-
model: {
|
|
4
|
-
maxHeight?: number;
|
|
5
|
-
setMaxHeight: Function;
|
|
6
|
-
};
|
|
7
|
-
handleClose: () => void;
|
|
8
|
-
}): JSX.Element;
|
|
9
|
-
declare const _default: typeof SetMaxHeightDlg;
|
|
10
|
-
export default _default;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
declare function SetMaxHeightDlg(props: {
|
|
3
|
+
model: {
|
|
4
|
+
maxHeight?: number;
|
|
5
|
+
setMaxHeight: Function;
|
|
6
|
+
};
|
|
7
|
+
handleClose: () => void;
|
|
8
|
+
}): JSX.Element;
|
|
9
|
+
declare const _default: typeof SetMaxHeightDlg;
|
|
10
|
+
export default _default;
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
import PluginManager from '@jbrowse/core/PluginManager';
|
|
2
|
-
export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
1
|
+
import PluginManager from '@jbrowse/core/PluginManager';
|
|
2
|
+
export default function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
export { default as modelFactory } from './model';
|
|
2
|
-
export { default as configSchema } from './configSchema';
|
|
1
|
+
export { default as modelFactory } from './model';
|
|
2
|
+
export { default as configSchema } from './configSchema';
|