@jbrowse/plugin-linear-genome-view 1.7.0 → 1.7.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +13 -13
- package/dist/BaseLinearDisplay/components/Block.d.ts +15 -15
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +12 -12
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -4
- package/dist/BaseLinearDisplay/index.d.ts +5 -5
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +227 -230
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -96
- package/dist/LinearBareDisplay/configSchema.d.ts +2 -2
- package/dist/LinearBareDisplay/index.d.ts +2 -2
- package/dist/LinearBareDisplay/model.d.ts +192 -192
- package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -10
- package/dist/LinearBasicDisplay/configSchema.d.ts +2 -2
- package/dist/LinearBasicDisplay/index.d.ts +2 -2
- package/dist/LinearBasicDisplay/model.d.ts +213 -213
- package/dist/LinearGenomeView/components/CenterLine.d.ts +14 -14
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -6
- package/dist/LinearGenomeView/components/Header.d.ts +7 -7
- package/dist/LinearGenomeView/components/HelpDialog.d.ts +5 -5
- package/dist/LinearGenomeView/components/ImportForm.d.ts +7 -7
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +7 -7
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -4
- package/dist/LinearGenomeView/components/MiniControls.d.ts +6 -6
- package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -22
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +132 -124
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +21 -21
- package/dist/LinearGenomeView/components/RubberBand.d.ts +9 -20
- package/dist/LinearGenomeView/components/Ruler.d.ts +27 -27
- package/dist/LinearGenomeView/components/ScaleBar.d.ts +401 -401
- package/dist/LinearGenomeView/components/SearchBox.d.ts +8 -8
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +8 -8
- package/dist/LinearGenomeView/components/SequenceDialog.d.ts +8 -8
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +9 -9
- package/dist/LinearGenomeView/components/TrackLabel.d.ts +44 -44
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +10 -10
- package/dist/LinearGenomeView/components/VerticalGuides.d.ts +9 -9
- package/dist/LinearGenomeView/components/ZoomControls.d.ts +7 -7
- package/dist/LinearGenomeView/components/util.d.ts +2 -2
- package/dist/LinearGenomeView/index.d.ts +292 -292
- package/dist/LinearGenomeView/util.d.ts +14 -14
- package/dist/index.d.ts +565 -565
- package/package.json +4 -3
- package/dist/LinearBareDisplay/index.test.d.ts +0 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.test.d.ts +0 -1
- package/dist/plugin-linear-genome-view.cjs.development.js +0 -8121
- package/dist/plugin-linear-genome-view.cjs.development.js.map +0 -1
- package/dist/plugin-linear-genome-view.cjs.production.min.js +0 -2
- package/dist/plugin-linear-genome-view.cjs.production.min.js.map +0 -1
- package/dist/plugin-linear-genome-view.esm.js +0 -8105
- package/dist/plugin-linear-genome-view.esm.js.map +0 -1
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/// <reference types="react" />
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import {
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import {
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import {
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declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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}, {
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renderInProgress: AbortController | undefined;
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filled: boolean;
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reactElement: import("react").ReactElement<any, string |
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features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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layout: any;
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status: string;
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error: unknown;
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message: string | undefined;
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maxHeightReached: boolean;
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ReactComponent: ({ model, }: {
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model: any;
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}) => any;
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renderProps: any;
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} & {
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doReload(): void;
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afterAttach(): void;
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setStatus(message: string): void;
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setLoading(abortController: AbortController): void;
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setMessage(messageText: string): void;
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setRendered(props: {
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reactElement: import("react").ReactElement<any, string |
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features: Map<string, import("@jbrowse/core/util").Feature>;
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layout: any;
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maxHeightReached: boolean;
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renderProps: any;
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} | undefined): void;
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setError(error: unknown): void;
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
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trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
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}, {
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rendererTypeName: string;
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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blockState?: Record<string, any> | undefined;
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}>;
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readonly DisplayBlurb: import("react").FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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readonly parentTrack: any;
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renderProps(): any;
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readonly rendererType: any;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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trackMenuItems(): MenuItem[];
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readonly viewMenuActions: MenuItem[];
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regionCannotBeRendered(): undefined;
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} & {
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setError(error?: unknown): void;
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setRpcDriverName(rpcDriverName: string): void;
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reload(): void;
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} & {
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currBpPerPx: number;
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message: string;
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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scrollTop: number;
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estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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} & {
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readonly blockType: "staticBlocks" | "dynamicBlocks";
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
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} & {
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readonly renderDelay: number;
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readonly TooltipComponent: import("react").FC<any>;
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readonly selectedFeatureId: string | undefined;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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} & {
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readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
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getFeatureOverlapping(blockKey: string, x: number, y: number): any;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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readonly currentBytesRequested: number;
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readonly currentFeatureScreenDensity: number;
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readonly maxFeatureScreenDensity: any;
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readonly estimatedStatsReady: boolean;
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readonly maxAllowableBytes: number;
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} & {
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setMessage(message: string): void;
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afterAttach(): void;
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estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
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headers?: Record<string, string> | undefined;
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signal?: AbortSignal | undefined;
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filters?: string[] | undefined;
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}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
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setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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clearRegionStats(): void;
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setHeight(displayHeight: number): number;
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resizeHeight(distance: number): number;
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setScrollTop(scrollTop: number): void;
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updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
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deleteBlock(key: string): void;
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selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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clearFeatureSelection(): void;
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setFeatureIdUnderMouse(feature: string | undefined): void;
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reload(): void;
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setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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} & {
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reload(): Promise<void>;
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afterAttach(): void;
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} & {
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
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trackMenuItems(): MenuItem[];
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contextMenuItems(): {
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label: string;
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icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
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onClick: () => void;
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}[];
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renderProps(): any;
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} & {
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renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
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overrideHeight: number;
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}): Promise<JSX.Element>;
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} & {
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readonly rendererTypeName: any;
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readonly showLabels: any;
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readonly showDescriptions: any;
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readonly maxHeight: any;
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readonly displayMode: any;
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readonly rendererConfig: any;
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} & {
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toggleShowLabels(): void;
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toggleShowDescriptions(): void;
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setDisplayMode(val: string): void;
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setMaxHeight(val: number): void;
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} & {
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renderProps(): any;
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trackMenuItems(): MenuItem[];
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}, import("mobx-state-tree")._NotCustomized, {
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id: string;
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type: string;
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rpcDriverName: string | undefined;
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height: number;
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userBpPerPxLimit: number | undefined;
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userByteSizeLimit: number | undefined;
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} & import("mobx-state-tree")._NotCustomized>;
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export declare type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
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export declare type FeatureTrackModel = Instance<FeatureTrackStateModel>;
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export default stateModelFactory;
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/// <reference types="react" />
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import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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import { MenuItem } from '@jbrowse/core/ui';
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import { Instance } from 'mobx-state-tree';
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declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
|
|
14
|
+
refName: import("mobx-state-tree").ISimpleType<string>;
|
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15
|
+
start: import("mobx-state-tree").ISimpleType<number>;
|
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16
|
+
end: import("mobx-state-tree").ISimpleType<number>;
|
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17
|
+
reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
18
|
+
} & {
|
|
19
|
+
assemblyName: import("mobx-state-tree").ISimpleType<string>;
|
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20
|
+
}, {
|
|
21
|
+
setRefName(newRefName: string): void;
|
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22
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
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23
|
+
reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
|
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24
|
+
isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
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25
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isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
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26
|
+
}, {
|
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+
renderInProgress: AbortController | undefined;
|
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28
|
+
filled: boolean;
|
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29
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
|
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30
|
+
features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
|
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31
|
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layout: any;
|
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32
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status: string;
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33
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error: unknown;
|
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34
|
+
message: string | undefined;
|
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35
|
+
maxHeightReached: boolean;
|
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36
|
+
ReactComponent: ({ model, }: {
|
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model: any;
|
|
38
|
+
}) => any;
|
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39
|
+
renderProps: any;
|
|
40
|
+
} & {
|
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41
|
+
doReload(): void;
|
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42
|
+
afterAttach(): void;
|
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43
|
+
setStatus(message: string): void;
|
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44
|
+
setLoading(abortController: AbortController): void;
|
|
45
|
+
setMessage(messageText: string): void;
|
|
46
|
+
setRendered(props: {
|
|
47
|
+
reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
|
|
48
|
+
features: Map<string, import("@jbrowse/core/util").Feature>;
|
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49
|
+
layout: any;
|
|
50
|
+
maxHeightReached: boolean;
|
|
51
|
+
renderProps: any;
|
|
52
|
+
} | undefined): void;
|
|
53
|
+
setError(error: unknown): void;
|
|
54
|
+
reload(): void;
|
|
55
|
+
beforeDestroy(): void;
|
|
56
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
57
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
58
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
59
|
+
} & {
|
|
60
|
+
type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
|
|
61
|
+
trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
62
|
+
trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
63
|
+
trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
64
|
+
trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
65
|
+
configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
|
|
66
|
+
}, {
|
|
67
|
+
rendererTypeName: string;
|
|
68
|
+
error: unknown;
|
|
69
|
+
} & {
|
|
70
|
+
readonly RenderingComponent: import("react").FC<{
|
|
71
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
72
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
73
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
74
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
75
|
+
}> & {
|
|
76
|
+
rendererTypeName: string;
|
|
77
|
+
error: unknown;
|
|
78
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
79
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
80
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
81
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
82
|
+
}, {
|
|
83
|
+
rendererTypeName: string;
|
|
84
|
+
error: unknown;
|
|
85
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
86
|
+
onHorizontalScroll?: Function | undefined;
|
|
87
|
+
blockState?: Record<string, any> | undefined;
|
|
88
|
+
}>;
|
|
89
|
+
readonly DisplayBlurb: import("react").FC<{
|
|
90
|
+
model: import("mobx-state-tree").ModelInstanceTypeProps<{
|
|
91
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
92
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
93
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
94
|
+
}> & {
|
|
95
|
+
rendererTypeName: string;
|
|
96
|
+
error: unknown;
|
|
97
|
+
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
98
|
+
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
99
|
+
type: import("mobx-state-tree").ISimpleType<string>;
|
|
100
|
+
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
101
|
+
}, {
|
|
102
|
+
rendererTypeName: string;
|
|
103
|
+
error: unknown;
|
|
104
|
+
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
105
|
+
}> | null;
|
|
106
|
+
readonly adapterConfig: any;
|
|
107
|
+
readonly parentTrack: any;
|
|
108
|
+
renderProps(): any;
|
|
109
|
+
readonly rendererType: any;
|
|
110
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
111
|
+
trackMenuItems(): MenuItem[];
|
|
112
|
+
readonly viewMenuActions: MenuItem[];
|
|
113
|
+
regionCannotBeRendered(): undefined;
|
|
114
|
+
} & {
|
|
115
|
+
setError(error?: unknown): void;
|
|
116
|
+
setRpcDriverName(rpcDriverName: string): void;
|
|
117
|
+
reload(): void;
|
|
118
|
+
} & {
|
|
119
|
+
currBpPerPx: number;
|
|
120
|
+
message: string;
|
|
121
|
+
featureIdUnderMouse: string | undefined;
|
|
122
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
123
|
+
scrollTop: number;
|
|
124
|
+
estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
|
|
125
|
+
estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
|
|
126
|
+
} & {
|
|
127
|
+
readonly blockType: "staticBlocks" | "dynamicBlocks";
|
|
128
|
+
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
129
|
+
} & {
|
|
130
|
+
readonly renderDelay: number;
|
|
131
|
+
readonly TooltipComponent: import("react").FC<any>;
|
|
132
|
+
readonly selectedFeatureId: string | undefined;
|
|
133
|
+
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
134
|
+
} & {
|
|
135
|
+
readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
|
|
136
|
+
readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
|
|
137
|
+
getFeatureOverlapping(blockKey: string, x: number, y: number): any;
|
|
138
|
+
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
139
|
+
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
140
|
+
readonly currentBytesRequested: number;
|
|
141
|
+
readonly currentFeatureScreenDensity: number;
|
|
142
|
+
readonly maxFeatureScreenDensity: any;
|
|
143
|
+
readonly estimatedStatsReady: boolean;
|
|
144
|
+
readonly maxAllowableBytes: number;
|
|
145
|
+
} & {
|
|
146
|
+
setMessage(message: string): void;
|
|
147
|
+
afterAttach(): void;
|
|
148
|
+
estimateRegionsStats(regions: import("@jbrowse/core/util").Region[], opts: {
|
|
149
|
+
headers?: Record<string, string> | undefined;
|
|
150
|
+
signal?: AbortSignal | undefined;
|
|
151
|
+
filters?: string[] | undefined;
|
|
152
|
+
}): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats>;
|
|
153
|
+
setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
|
|
154
|
+
setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
|
|
155
|
+
clearRegionStats(): void;
|
|
156
|
+
setHeight(displayHeight: number): number;
|
|
157
|
+
resizeHeight(distance: number): number;
|
|
158
|
+
setScrollTop(scrollTop: number): void;
|
|
159
|
+
updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
|
|
160
|
+
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
161
|
+
setCurrBpPerPx(n: number): void;
|
|
162
|
+
deleteBlock(key: string): void;
|
|
163
|
+
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
164
|
+
clearFeatureSelection(): void;
|
|
165
|
+
setFeatureIdUnderMouse(feature: string | undefined): void;
|
|
166
|
+
reload(): void;
|
|
167
|
+
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
168
|
+
} & {
|
|
169
|
+
readonly regionTooLarge: boolean;
|
|
170
|
+
readonly regionTooLargeReason: string;
|
|
171
|
+
} & {
|
|
172
|
+
reload(): Promise<void>;
|
|
173
|
+
afterAttach(): void;
|
|
174
|
+
} & {
|
|
175
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
176
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | undefined;
|
|
177
|
+
trackMenuItems(): MenuItem[];
|
|
178
|
+
contextMenuItems(): {
|
|
179
|
+
label: string;
|
|
180
|
+
icon: import("@material-ui/core/OverridableComponent").OverridableComponent<import("@material-ui/core").SvgIconTypeMap<{}, "svg">>;
|
|
181
|
+
onClick: () => void;
|
|
182
|
+
}[];
|
|
183
|
+
renderProps(): any;
|
|
184
|
+
} & {
|
|
185
|
+
renderSvg(opts: import("../LinearGenomeView").ExportSvgOptions & {
|
|
186
|
+
overrideHeight: number;
|
|
187
|
+
}): Promise<JSX.Element>;
|
|
188
|
+
} & {
|
|
189
|
+
readonly rendererTypeName: any;
|
|
190
|
+
readonly showLabels: any;
|
|
191
|
+
readonly showDescriptions: any;
|
|
192
|
+
readonly maxHeight: any;
|
|
193
|
+
readonly displayMode: any;
|
|
194
|
+
readonly rendererConfig: any;
|
|
195
|
+
} & {
|
|
196
|
+
toggleShowLabels(): void;
|
|
197
|
+
toggleShowDescriptions(): void;
|
|
198
|
+
setDisplayMode(val: string): void;
|
|
199
|
+
setMaxHeight(val: number): void;
|
|
200
|
+
} & {
|
|
201
|
+
renderProps(): any;
|
|
202
|
+
trackMenuItems(): MenuItem[];
|
|
203
|
+
}, import("mobx-state-tree")._NotCustomized, {
|
|
204
|
+
id: string;
|
|
205
|
+
type: string;
|
|
206
|
+
rpcDriverName: string | undefined;
|
|
207
|
+
height: number;
|
|
208
|
+
userBpPerPxLimit: number | undefined;
|
|
209
|
+
userByteSizeLimit: number | undefined;
|
|
210
|
+
} & import("mobx-state-tree")._NotCustomized>;
|
|
211
|
+
export declare type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
|
|
212
|
+
export declare type FeatureTrackModel = Instance<FeatureTrackStateModel>;
|
|
213
|
+
export default stateModelFactory;
|
|
@@ -1,14 +1,14 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
import { Instance } from 'mobx-state-tree';
|
|
3
|
-
import { LinearGenomeViewStateModel } from '..';
|
|
4
|
-
declare type LGV = Instance<LinearGenomeViewStateModel>;
|
|
5
|
-
declare function CenterLine({ model }: {
|
|
6
|
-
model: LGV;
|
|
7
|
-
}): JSX.Element | null;
|
|
8
|
-
declare namespace CenterLine {
|
|
9
|
-
var propTypes: {
|
|
10
|
-
model: import("prop-types").Validator<any>;
|
|
11
|
-
};
|
|
12
|
-
}
|
|
13
|
-
declare const _default: typeof CenterLine;
|
|
14
|
-
export default _default;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import { Instance } from 'mobx-state-tree';
|
|
3
|
+
import { LinearGenomeViewStateModel } from '..';
|
|
4
|
+
declare type LGV = Instance<LinearGenomeViewStateModel>;
|
|
5
|
+
declare function CenterLine({ model }: {
|
|
6
|
+
model: LGV;
|
|
7
|
+
}): JSX.Element | null;
|
|
8
|
+
declare namespace CenterLine {
|
|
9
|
+
var propTypes: {
|
|
10
|
+
model: import("prop-types").Validator<any>;
|
|
11
|
+
};
|
|
12
|
+
}
|
|
13
|
+
declare const _default: typeof CenterLine;
|
|
14
|
+
export default _default;
|
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
import { LinearGenomeViewModel as LGV } from '..';
|
|
3
|
-
export default function ExportSvgDlg({ model, handleClose, }: {
|
|
4
|
-
model: LGV;
|
|
5
|
-
handleClose: () => void;
|
|
6
|
-
}): JSX.Element;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import { LinearGenomeViewModel as LGV } from '..';
|
|
3
|
+
export default function ExportSvgDlg({ model, handleClose, }: {
|
|
4
|
+
model: LGV;
|
|
5
|
+
handleClose: () => void;
|
|
6
|
+
}): JSX.Element;
|
|
@@ -1,7 +1,7 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
import { LinearGenomeViewModel } from '..';
|
|
3
|
-
declare type LGV = LinearGenomeViewModel;
|
|
4
|
-
declare const LinearGenomeViewHeader: ({ model }: {
|
|
5
|
-
model: LGV;
|
|
6
|
-
}) => JSX.Element;
|
|
7
|
-
export default LinearGenomeViewHeader;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import { LinearGenomeViewModel } from '..';
|
|
3
|
+
declare type LGV = LinearGenomeViewModel;
|
|
4
|
+
declare const LinearGenomeViewHeader: ({ model }: {
|
|
5
|
+
model: LGV;
|
|
6
|
+
}) => JSX.Element;
|
|
7
|
+
export default LinearGenomeViewHeader;
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
export declare const useStyles: (props?: any) =>
|
|
3
|
-
export default function HelpDialog({ handleClose, }: {
|
|
4
|
-
handleClose: () => void;
|
|
5
|
-
}): JSX.Element;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
export declare const useStyles: (props?: any) => import("@material-ui/styles").ClassNameMap<"closeButton">;
|
|
3
|
+
export default function HelpDialog({ handleClose, }: {
|
|
4
|
+
handleClose: () => void;
|
|
5
|
+
}): JSX.Element;
|
|
@@ -1,7 +1,7 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
import { LinearGenomeViewModel } from '..';
|
|
3
|
-
declare type LGV = LinearGenomeViewModel;
|
|
4
|
-
declare const ImportForm: ({ model }: {
|
|
5
|
-
model: LGV;
|
|
6
|
-
}) => JSX.Element;
|
|
7
|
-
export default ImportForm;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import { LinearGenomeViewModel } from '..';
|
|
3
|
+
declare type LGV = LinearGenomeViewModel;
|
|
4
|
+
declare const ImportForm: ({ model }: {
|
|
5
|
+
model: LGV;
|
|
6
|
+
}) => JSX.Element;
|
|
7
|
+
export default ImportForm;
|
|
@@ -1,7 +1,7 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
import { LinearGenomeViewModel } from '..';
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3
|
-
declare type LGV = LinearGenomeViewModel;
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4
|
-
declare const LinearGenomeView: ({ model }: {
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5
|
-
model: LGV;
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6
|
-
}) => JSX.Element;
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7
|
-
export default LinearGenomeView;
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1
|
+
/// <reference types="react" />
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|
2
|
+
import { LinearGenomeViewModel } from '..';
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|
3
|
+
declare type LGV = LinearGenomeViewModel;
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|
4
|
+
declare const LinearGenomeView: ({ model }: {
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|
5
|
+
model: LGV;
|
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6
|
+
}) => JSX.Element;
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7
|
+
export default LinearGenomeView;
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@@ -1,4 +1,4 @@
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1
|
-
import { LinearGenomeViewModel, ExportSvgOptions } from '..';
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2
|
-
declare type LGV = LinearGenomeViewModel;
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3
|
-
export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
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4
|
-
export {};
|
|
1
|
+
import { LinearGenomeViewModel, ExportSvgOptions } from '..';
|
|
2
|
+
declare type LGV = LinearGenomeViewModel;
|
|
3
|
+
export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
|
|
4
|
+
export {};
|
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
/// <reference types="react" />
|
|
2
|
-
import { LinearGenomeViewModel } from '..';
|
|
3
|
-
declare const MiniControls: (props: {
|
|
4
|
-
model: LinearGenomeViewModel;
|
|
5
|
-
}) => JSX.Element;
|
|
6
|
-
export default MiniControls;
|
|
1
|
+
/// <reference types="react" />
|
|
2
|
+
import { LinearGenomeViewModel } from '..';
|
|
3
|
+
declare const MiniControls: (props: {
|
|
4
|
+
model: LinearGenomeViewModel;
|
|
5
|
+
}) => JSX.Element;
|
|
6
|
+
export default MiniControls;
|
|
@@ -1,22 +1,22 @@
|
|
|
1
|
-
import React from 'react';
|
|
2
|
-
import ReactPropTypes from 'prop-types';
|
|
3
|
-
import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
|
|
4
|
-
import { LinearGenomeViewModel } from '..';
|
|
5
|
-
declare type LGV = LinearGenomeViewModel;
|
|
6
|
-
declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
|
|
7
|
-
model: LGV;
|
|
8
|
-
overview: Base1DViewModel;
|
|
9
|
-
ControlComponent?: React.ReactElement;
|
|
10
|
-
}): JSX.Element;
|
|
11
|
-
declare namespace OverviewRubberBand {
|
|
12
|
-
var propTypes: {
|
|
13
|
-
model: ReactPropTypes.Validator<any>;
|
|
14
|
-
overview: ReactPropTypes.Validator<any>;
|
|
15
|
-
ControlComponent: ReactPropTypes.Requireable<ReactPropTypes.ReactNodeLike>;
|
|
16
|
-
};
|
|
17
|
-
var defaultProps: {
|
|
18
|
-
ControlComponent: JSX.Element;
|
|
19
|
-
};
|
|
20
|
-
}
|
|
21
|
-
declare const _default: typeof OverviewRubberBand;
|
|
22
|
-
export default _default;
|
|
1
|
+
import React from 'react';
|
|
2
|
+
import ReactPropTypes from 'prop-types';
|
|
3
|
+
import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
|
|
4
|
+
import { LinearGenomeViewModel } from '..';
|
|
5
|
+
declare type LGV = LinearGenomeViewModel;
|
|
6
|
+
declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
|
|
7
|
+
model: LGV;
|
|
8
|
+
overview: Base1DViewModel;
|
|
9
|
+
ControlComponent?: React.ReactElement;
|
|
10
|
+
}): JSX.Element;
|
|
11
|
+
declare namespace OverviewRubberBand {
|
|
12
|
+
var propTypes: {
|
|
13
|
+
model: ReactPropTypes.Validator<any>;
|
|
14
|
+
overview: ReactPropTypes.Validator<any>;
|
|
15
|
+
ControlComponent: ReactPropTypes.Requireable<ReactPropTypes.ReactNodeLike>;
|
|
16
|
+
};
|
|
17
|
+
var defaultProps: {
|
|
18
|
+
ControlComponent: JSX.Element;
|
|
19
|
+
};
|
|
20
|
+
}
|
|
21
|
+
declare const _default: typeof OverviewRubberBand;
|
|
22
|
+
export default _default;
|