@jbrowse/plugin-legacy-jbrowse 1.7.0 → 1.7.4

package/dist/JBrowse1TextSeachAdapter/index.js

@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "AdapterClass", {
   enumerable: true,
   get: function get() {
-    return _JBrowse1TextSearchAdapter["default"];
+    return _JBrowse1TextSearchAdapter.default;
   }
 });
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });
 

package/dist/NCListAdapter/NCListAdapter.d.ts

@@ -1,31 +1,31 @@
-import { Region } from '@jbrowse/core/util/types';
-import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
-import { Feature } from '@jbrowse/core/util/simpleFeature';
-import { Instance } from 'mobx-state-tree';
-import NCListFeature from './NCListFeature';
-import MyConfigSchema from './configSchema';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
-export default class NCListAdapter extends BaseFeatureDataAdapter {
-    private nclist;
-    private configRefNames?;
-    constructor(config: Instance<typeof MyConfigSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
-    /**
-     * Fetch features for a certain region. Use getFeaturesInRegion() if you also
-     * want to verify that the store has features for the given reference sequence
-     * before fetching.
-     * @param region -
-     * @param opts - [signal] optional signalling object for aborting the fetch
-     * @returns Observable of Feature objects in the region
-     */
-    getFeatures(region: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
-    wrapFeature(ncFeature: any): NCListFeature;
-    hasDataForRefName(refName: string): Promise<boolean>;
-    getRefNames(): Promise<string[]>;
-    /**
-     * called to provide a hint that data tied to a certain region
-     * will not be needed for the forseeable future and can be purged
-     * from caches, etc
-     */
-    freeResources(): void;
-}
+import { Region } from '@jbrowse/core/util/types';
+import { BaseFeatureDataAdapter, BaseOptions } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { Feature } from '@jbrowse/core/util/simpleFeature';
+import { Instance } from 'mobx-state-tree';
+import NCListFeature from './NCListFeature';
+import MyConfigSchema from './configSchema';
+import PluginManager from '@jbrowse/core/PluginManager';
+import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
+export default class NCListAdapter extends BaseFeatureDataAdapter {
+    private nclist;
+    private configRefNames?;
+    constructor(config: Instance<typeof MyConfigSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
+    /**
+     * Fetch features for a certain region. Use getFeaturesInRegion() if you also
+     * want to verify that the store has features for the given reference sequence
+     * before fetching.
+     * @param region -
+     * @param opts - [signal] optional signalling object for aborting the fetch
+     * @returns Observable of Feature objects in the region
+     */
+    getFeatures(region: Region, opts?: BaseOptions): import("rxjs").Observable<Feature>;
+    wrapFeature(ncFeature: any): NCListFeature;
+    hasDataForRefName(refName: string): Promise<boolean>;
+    getRefNames(): Promise<string[]>;
+    /**
+     * called to provide a hint that data tied to a certain region
+     * will not be needed for the forseeable future and can be purged
+     * from caches, etc
+     */
+    freeResources(): void;
+}

package/dist/NCListAdapter/NCListAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -39,16 +39,16 @@ var _configuration = require("@jbrowse/core/configuration");
 
 var _NCListFeature = _interopRequireDefault(require("./NCListFeature"));
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 function _asyncIterator(iterable) { var method, async, sync, retry = 2; for ("undefined" != typeof Symbol && (async = Symbol.asyncIterator, sync = Symbol.iterator); retry--;) { if (async && null != (method = iterable[async])) return method.call(iterable); if (sync && null != (method = iterable[sync])) return new AsyncFromSyncIterator(method.call(iterable)); async = "@@asyncIterator", sync = "@@iterator"; } throw new TypeError("Object is not async iterable"); }
 
-function AsyncFromSyncIterator(s) { function AsyncFromSyncIteratorContinuation(r) { if (Object(r) !== r) return Promise.reject(new TypeError(r + " is not an object.")); var done = r.done; return Promise.resolve(r.value).then(function (value) { return { value: value, done: done }; }); } return AsyncFromSyncIterator = function AsyncFromSyncIterator(s) { this.s = s, this.n = s.next; }, AsyncFromSyncIterator.prototype = { s: null, n: null, next: function next() { return AsyncFromSyncIteratorContinuation(this.n.apply(this.s, arguments)); }, "return": function _return(value) { var ret = this.s["return"]; return void 0 === ret ? Promise.resolve({ value: value, done: !0 }) : AsyncFromSyncIteratorContinuation(ret.apply(this.s, arguments)); }, "throw": function _throw(value) { var thr = this.s["return"]; return void 0 === thr ? Promise.reject(value) : AsyncFromSyncIteratorContinuation(thr.apply(this.s, arguments)); } }, new AsyncFromSyncIterator(s); }
+function AsyncFromSyncIterator(s) { function AsyncFromSyncIteratorContinuation(r) { if (Object(r) !== r) return Promise.reject(new TypeError(r + " is not an object.")); var done = r.done; return Promise.resolve(r.value).then(function (value) { return { value: value, done: done }; }); } return AsyncFromSyncIterator = function AsyncFromSyncIterator(s) { this.s = s, this.n = s.next; }, AsyncFromSyncIterator.prototype = { s: null, n: null, next: function next() { return AsyncFromSyncIteratorContinuation(this.n.apply(this.s, arguments)); }, return: function _return(value) { var ret = this.s.return; return void 0 === ret ? Promise.resolve({ value: value, done: !0 }) : AsyncFromSyncIteratorContinuation(ret.apply(this.s, arguments)); }, throw: function _throw(value) { var thr = this.s.return; return void 0 === thr ? Promise.reject(value) : AsyncFromSyncIteratorContinuation(thr.apply(this.s, arguments)); } }, new AsyncFromSyncIterator(s); }
 
 var NCListAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
-  (0, _inherits2["default"])(NCListAdapter, _BaseFeatureDataAdapt);
+  (0, _inherits2.default)(NCListAdapter, _BaseFeatureDataAdapt);
 
   var _super = _createSuper(NCListAdapter);
 
@@ -56,14 +56,14 @@ var NCListAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   function NCListAdapter(config, getSubAdapter, pluginManager) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, NCListAdapter);
+    (0, _classCallCheck2.default)(this, NCListAdapter);
     _this = _super.call(this, config, getSubAdapter, pluginManager);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "nclist", void 0);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "configRefNames", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "nclist", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "configRefNames", void 0);
     var refNames = (0, _configuration.readConfObject)(config, 'refNames');
     var rootUrlTemplate = (0, _configuration.readConfObject)(config, 'rootUrlTemplate');
     _this.configRefNames = refNames;
-    _this.nclist = new _nclist["default"]({
+    _this.nclist = new _nclist.default({
       baseUrl: '',
       urlTemplate: rootUrlTemplate.uri,
       readFile: function readFile(url) {
@@ -82,17 +82,17 @@ var NCListAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
    */
 
 
-  (0, _createClass2["default"])(NCListAdapter, [{
+  (0, _createClass2.default)(NCListAdapter, [{
     key: "getFeatures",
     value: function getFeatures(region) {
       var _this2 = this;
 
       var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
       return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(observer) {
+        var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(observer) {
           var signal, _iteratorAbruptCompletion, _didIteratorError, _iteratorError, _iterator, _step, feature;
 
-          return _regenerator["default"].wrap(function _callee$(_context) {
+          return _regenerator.default.wrap(function _callee$(_context) {
             while (1) {
               switch (_context.prev = _context.next) {
                 case 0:
@@ -135,13 +135,13 @@ var NCListAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
                   _context.prev = 20;
                   _context.prev = 21;
 
-                  if (!(_iteratorAbruptCompletion && _iterator["return"] != null)) {
+                  if (!(_iteratorAbruptCompletion && _iterator.return != null)) {
                     _context.next = 25;
                     break;
                   }
 
                   _context.next = 25;
-                  return _iterator["return"]();
+                  return _iterator.return();
 
                 case 25:
                   _context.prev = 25;
@@ -179,14 +179,14 @@ var NCListAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   }, {
     key: "wrapFeature",
     value: function wrapFeature(ncFeature) {
-      return new _NCListFeature["default"](ncFeature, undefined, "".concat(this.id, "-").concat(ncFeature.id()));
+      return new _NCListFeature.default(ncFeature, undefined, "".concat(this.id, "-").concat(ncFeature.id()));
     }
   }, {
     key: "hasDataForRefName",
     value: function () {
-      var _hasDataForRefName = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(refName) {
+      var _hasDataForRefName = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(refName) {
         var root;
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -234,4 +234,4 @@ var NCListAdapter = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   return NCListAdapter;
 }(_BaseAdapter.BaseFeatureDataAdapter);
 
-exports["default"] = NCListAdapter;
+exports.default = NCListAdapter;

package/dist/NCListAdapter/NCListAdapter.test.js

@@ -18,20 +18,20 @@ var _NCListAdapter = _interopRequireDefault(require("./NCListAdapter"));
 
 var _configSchema = _interopRequireDefault(require("./configSchema"));
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it["return"] != null) it["return"](); } finally { if (didErr) throw err; } } }; }
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
 
 function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
 
 function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
 
-test('adapter can fetch features from ensembl_genes test set', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('adapter can fetch features from ensembl_genes test set', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var rootTemplate, args, adapter, features, featuresArray, featuresJsonArray, _iterator, _step, feature;
 
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
-          rootTemplate = _path["default"].join(__dirname, '..', '..', 'test_data', 'ensembl_genes', '{refseq}', 'trackData.json').replace(/\\/g, '\\\\');
+          rootTemplate = _path.default.join(__dirname, '..', '..', 'test_data', 'ensembl_genes', '{refseq}', 'trackData.json').replace(/\\/g, '\\\\');
           _context.next = 3;
           return _fs.promises.stat(rootTemplate.replace('{refseq}', '21'));
 
@@ -44,7 +44,7 @@ test('adapter can fetch features from ensembl_genes test set', /*#__PURE__*/(0,
               locationType: 'UriLocation'
             }
           };
-          adapter = new _NCListAdapter["default"](_configSchema["default"].create(args));
+          adapter = new _NCListAdapter.default(_configSchema.default.create(args));
           features = adapter.getFeatures({
             assemblyName: 'volvox',
             refName: '21',

package/dist/NCListAdapter/NCListFeature.d.ts

@@ -1,31 +1,31 @@
-import { Feature, SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
-/**
- * wrapper to adapt nclist features to act like jbrowse 2 features
- */
-export default class NCListFeature implements Feature {
-    private ncFeature;
-    private parentHandle?;
-    private uniqueId;
-    constructor(ncFeature: any, parent?: Feature, id?: string);
-    set(): void;
-    jb2TagToJb1Tag(tag: string): string;
-    jb1TagToJb2Tag(tag: string): string;
-    get(attrName: string): any;
-    /**
-     * Get an array listing which data keys are present in this feature.
-     */
-    tags(): string[];
-    /**
-     * Get the unique ID of this feature.
-     */
-    id(): string;
-    /**
-     * Get this feature's parent feature, or undefined if none.
-     */
-    parent(): Feature | undefined;
-    /**
-     * Get an array of child features, or undefined if none.
-     */
-    children(): Feature[] | undefined;
-    toJSON(): SimpleFeatureSerialized;
-}
+import { Feature, SimpleFeatureSerialized } from '@jbrowse/core/util/simpleFeature';
+/**
+ * wrapper to adapt nclist features to act like jbrowse 2 features
+ */
+export default class NCListFeature implements Feature {
+    private ncFeature;
+    private parentHandle?;
+    private uniqueId;
+    constructor(ncFeature: any, parent?: Feature, id?: string);
+    set(): void;
+    jb2TagToJb1Tag(tag: string): string;
+    jb1TagToJb2Tag(tag: string): string;
+    get(attrName: string): any;
+    /**
+     * Get an array listing which data keys are present in this feature.
+     */
+    tags(): string[];
+    /**
+     * Get the unique ID of this feature.
+     */
+    id(): string;
+    /**
+     * Get this feature's parent feature, or undefined if none.
+     */
+    parent(): Feature | undefined;
+    /**
+     * Get an array of child features, or undefined if none.
+     */
+    children(): Feature[] | undefined;
+    toJSON(): SimpleFeatureSerialized;
+}

package/dist/NCListAdapter/NCListFeature.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
@@ -26,15 +26,15 @@ var jb1ToJb2 = {
 var NCListFeature = /*#__PURE__*/function () {
   // eslint-disable-next-line @typescript-eslint/no-explicit-any
   function NCListFeature(ncFeature, parent, id) {
-    (0, _classCallCheck2["default"])(this, NCListFeature);
+    (0, _classCallCheck2.default)(this, NCListFeature);
     this.ncFeature = ncFeature;
-    (0, _defineProperty2["default"])(this, "parentHandle", void 0);
-    (0, _defineProperty2["default"])(this, "uniqueId", void 0);
+    (0, _defineProperty2.default)(this, "parentHandle", void 0);
+    (0, _defineProperty2.default)(this, "uniqueId", void 0);
     this.uniqueId = id || ncFeature.id();
     this.parentHandle = parent;
   }
 
-  (0, _createClass2["default"])(NCListFeature, [{
+  (0, _createClass2.default)(NCListFeature, [{
     key: "set",
     value: function set() {
       throw new Error('not implemented');
@@ -139,4 +139,4 @@ var NCListFeature = /*#__PURE__*/function () {
   return NCListFeature;
 }();
 
-exports["default"] = NCListFeature;
+exports.default = NCListFeature;

package/dist/NCListAdapter/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/NCListAdapter/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -24,4 +24,4 @@ var _default = (0, _configuration.ConfigurationSchema)('NCListAdapter', {
   explicitlyTyped: true
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/NCListAdapter/index.d.ts

@@ -1 +1 @@
-export { default as configSchema } from './configSchema';
+export { default as configSchema } from './configSchema';

package/dist/NCListAdapter/index.js

@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });
 

package/dist/index.d.ts

@@ -1,6 +1,6 @@
-import Plugin from '@jbrowse/core/Plugin';
-import PluginManager from '@jbrowse/core/PluginManager';
-export default class LegacyJBrowsePlugin extends Plugin {
-    name: string;
-    install(pluginManager: PluginManager): void;
-}
+import Plugin from '@jbrowse/core/Plugin';
+import PluginManager from '@jbrowse/core/PluginManager';
+export default class LegacyJBrowsePlugin extends Plugin {
+    name: string;
+    install(pluginManager: PluginManager): void;
+}

package/dist/index.js

@@ -7,7 +7,7 @@ var _typeof = require("@babel/runtime/helpers/typeof");
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
@@ -41,43 +41,43 @@ var _JBrowse1Connection = require("./JBrowse1Connection");
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var LegacyJBrowsePlugin = /*#__PURE__*/function (_Plugin) {
-  (0, _inherits2["default"])(LegacyJBrowsePlugin, _Plugin);
+  (0, _inherits2.default)(LegacyJBrowsePlugin, _Plugin);
 
   var _super = _createSuper(LegacyJBrowsePlugin);
 
   function LegacyJBrowsePlugin() {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, LegacyJBrowsePlugin);
+    (0, _classCallCheck2.default)(this, LegacyJBrowsePlugin);
 
     for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
       args[_key] = arguments[_key];
     }
 
     _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "name", 'LegacyJBrowsePlugin');
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'LegacyJBrowsePlugin');
     return _this;
   }
 
-  (0, _createClass2["default"])(LegacyJBrowsePlugin, [{
+  (0, _createClass2.default)(LegacyJBrowsePlugin, [{
     key: "install",
     value: function install(pluginManager) {
       pluginManager.addAdapterType(function () {
-        return new _AdapterType["default"]({
+        return new _AdapterType.default({
           name: 'NCListAdapter',
           configSchema: _NCListAdapter.configSchema,
           getAdapterClass: function getAdapterClass() {
             return Promise.resolve().then(function () {
               return _interopRequireWildcard(require('./NCListAdapter/NCListAdapter'));
             }).then(function (r) {
-              return r["default"];
+              return r.default;
             });
           }
         });
@@ -99,7 +99,7 @@ var LegacyJBrowsePlugin = /*#__PURE__*/function (_Plugin) {
         };
       });
       pluginManager.addTextSearchAdapterType(function () {
-        return new _TextSearchAdapterType["default"]({
+        return new _TextSearchAdapterType.default({
           name: 'JBrowse1TextSearchAdapter',
           configSchema: _JBrowse1TextSeachAdapter.configSchema,
           AdapterClass: _JBrowse1TextSeachAdapter.AdapterClass,
@@ -107,7 +107,7 @@ var LegacyJBrowsePlugin = /*#__PURE__*/function (_Plugin) {
         });
       });
       pluginManager.addConnectionType(function () {
-        return new _ConnectionType["default"]({
+        return new _ConnectionType.default({
           name: 'JBrowse1Connection',
           configSchema: _JBrowse1Connection.configSchema,
           stateModel: (0, _JBrowse1Connection.modelFactory)(pluginManager),
@@ -119,6 +119,6 @@ var LegacyJBrowsePlugin = /*#__PURE__*/function (_Plugin) {
     }
   }]);
   return LegacyJBrowsePlugin;
-}(_Plugin2["default"]);
+}(_Plugin2.default);
 
-exports["default"] = LegacyJBrowsePlugin;
+exports.default = LegacyJBrowsePlugin;

package/dist/index.test.js

@@ -11,12 +11,12 @@ var _ = _interopRequireDefault(require("."));
 test('plugin in a stock JBrowse', function () {
   var originalConsoleWarn = console.warn;
   console.warn = jest.fn();
-  var pluginManager = new _PluginManager["default"]([new _["default"]()]);
+  var pluginManager = new _PluginManager.default([new _.default()]);
   pluginManager.createPluggableElements();
   pluginManager.configure();
   console.warn = originalConsoleWarn;
   expect(function () {
-    return pluginManager.addPlugin(new _["default"]());
+    return pluginManager.addPlugin(new _.default());
   }).toThrow(/JBrowse already configured, cannot add plugins/);
   var NCListAdapter = pluginManager.getAdapterType('NCListAdapter');
   var config = NCListAdapter.configSchema.create({
@@ -26,7 +26,7 @@ test('plugin in a stock JBrowse', function () {
 });
 test('test creating a text search adapter', function () {
   console.warn = jest.fn();
-  var pluginManager = new _PluginManager["default"]([new _["default"]()]);
+  var pluginManager = new _PluginManager.default([new _.default()]);
   pluginManager.createPluggableElements();
   pluginManager.configure();
   var JB1TextSearchAdapter = pluginManager.getTextSearchAdapterType('JBrowse1TextSearchAdapter');

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-legacy-jbrowse",
-  "version": "1.7.0",
+  "version": "1.7.4",
   "description": "JBrowse 2 plugin for connecting to and reading JBrowse 1 data",
   "keywords": [
     "jbrowse",
@@ -29,9 +29,11 @@
     "prepack": "yarn build; yarn useDist",
     "postpack": "yarn useSrc",
     "useDist": "node ../../scripts/useDist.js",
-    "useSrc": "node ../../scripts/useSrc.js"
+    "useSrc": "node ../../scripts/useSrc.js",
+    "postbuild": "tsc --build tsconfig.build.json"
   },
   "dependencies": {
+    "@babel/runtime": "^7.17.9",
     "@gmod/nclist": "^0.2.1",
     "buffer-crc32": "^0.2.13",
     "generic-filehandle": "^2.2.2",
@@ -46,5 +48,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "cc13844074d11881d211342a6a7eea113561b70b"
+  "gitHead": "0a3e0c58055bbab8e3ab0270c139291b96eff403"
 }

package/dist/index.test.d.ts

@@ -1 +0,0 @@
-export {};