@jbrowse/plugin-legacy-jbrowse 1.7.0 → 1.7.4

package/dist/JBrowse1Connection/configSchema.d.ts

@@ -1,2 +1,2 @@
-declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
-export default _default;
+declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export default _default;

package/dist/JBrowse1Connection/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _models = require("@jbrowse/core/pluggableElementTypes/models");
 
@@ -27,4 +27,4 @@ var _default = (0, _configuration.ConfigurationSchema)('JBrowse1Connection', {
   baseConfiguration: _models.baseConnectionConfig
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/JBrowse1Connection/index.d.ts

@@ -1,2 +1,2 @@
-export { default as modelFactory } from './model';
-export { default as configSchema } from './configSchema';
+export { default as modelFactory } from './model';
+export { default as configSchema } from './configSchema';

package/dist/JBrowse1Connection/index.js

@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });
 Object.defineProperty(exports, "modelFactory", {
   enumerable: true,
   get: function get() {
-    return _model["default"];
+    return _model.default;
   }
 });
 

package/dist/JBrowse1Connection/jb1ConfigLoad.d.ts

@@ -1,36 +1,36 @@
-import { JBLocation, Config } from './types';
-export declare function fetchJb1(dataRoot?: JBLocation, baseConfig?: Config, baseConfigRoot?: JBLocation): Promise<Config>;
-export declare function createFinalConfig(baseConfig: Config, defaults?: {
-    tracks: never[];
-    containerID: string;
-    dataRoot: string;
-    show_tracklist: boolean;
-    show_nav: boolean;
-    show_menu: boolean;
-    show_overview: boolean;
-    show_fullviewlink: boolean;
-    update_browser_title: boolean;
-    updateBrowserURL: boolean;
-    refSeqs: string;
-    include: string[];
-    nameUrl: string;
-    datasets: {
-        _DEFAULT_EXAMPLES: boolean;
-        volvox: {
-            url: string;
-            name: string;
-        };
-        modencode: {
-            url: string;
-            name: string;
-        };
-        yeast: {
-            url: string;
-            name: string;
-        };
-    };
-    highlightSearchedRegions: boolean;
-    highResolutionMode: string;
-}): Promise<Config>;
-export declare function fetchConfigFile(location: JBLocation): Promise<Config>;
-export declare function parseJb1(config: string, url?: string): Config;
+import { JBLocation, Config } from './types';
+export declare function fetchJb1(dataRoot?: JBLocation, baseConfig?: Config, baseConfigRoot?: JBLocation): Promise<Config>;
+export declare function createFinalConfig(baseConfig: Config, defaults?: {
+    tracks: never[];
+    containerID: string;
+    dataRoot: string;
+    show_tracklist: boolean;
+    show_nav: boolean;
+    show_menu: boolean;
+    show_overview: boolean;
+    show_fullviewlink: boolean;
+    update_browser_title: boolean;
+    updateBrowserURL: boolean;
+    refSeqs: string;
+    include: string[];
+    nameUrl: string;
+    datasets: {
+        _DEFAULT_EXAMPLES: boolean;
+        volvox: {
+            url: string;
+            name: string;
+        };
+        modencode: {
+            url: string;
+            name: string;
+        };
+        yeast: {
+            url: string;
+            name: string;
+        };
+    };
+    highlightSearchedRegions: boolean;
+    highResolutionMode: string;
+}): Promise<Config>;
+export declare function fetchConfigFile(location: JBLocation): Promise<Config>;
+export declare function parseJb1(config: string, url?: string): Config;

package/dist/JBrowse1Connection/jb1ConfigLoad.js

@@ -37,7 +37,7 @@ function fetchJb1() {
 }
 
 function _fetchJb() {
-  _fetchJb = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+  _fetchJb = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
     var dataRoot,
         baseConfig,
         baseConfigRoot,
@@ -54,7 +54,7 @@ function _fetchJb() {
         newConfig,
         _args = arguments;
 
-    return _regenerator["default"].wrap(function _callee$(_context) {
+    return _regenerator.default.wrap(function _callee$(_context) {
       while (1) {
         switch (_context.prev = _context.next) {
           case 0:
@@ -118,7 +118,7 @@ function _fetchJb() {
             fetchedConfig = null;
             _context.prev = 20;
             _context.next = 23;
-            return fetchConfigFile((0, _defineProperty2["default"])({}, baseProtocol, "".concat(baseConfigLocation, "/").concat(conf)));
+            return fetchConfigFile((0, _defineProperty2.default)({}, baseProtocol, "".concat(baseConfigLocation, "/").concat(conf)));
 
           case 23:
             fetchedConfig = _context.sent;
@@ -169,12 +169,12 @@ function createFinalConfig(_x) {
 }
 
 function _createFinalConfig() {
-  _createFinalConfig = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(baseConfig) {
+  _createFinalConfig = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(baseConfig) {
     var defaults,
         configWithDefaults,
         finalConfig,
         _args2 = arguments;
-    return _regenerator["default"].wrap(function _callee2$(_context2) {
+    return _regenerator.default.wrap(function _callee2$(_context2) {
       while (1) {
         switch (_context2.prev = _context2.next) {
           case 0:
@@ -205,9 +205,9 @@ function fetchConfigFile(_x2) {
 }
 
 function _fetchConfigFile() {
-  _fetchConfigFile = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(location) {
+  _fetchConfigFile = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(location) {
     var result;
-    return _regenerator["default"].wrap(function _callee3$(_context3) {
+    return _regenerator.default.wrap(function _callee3$(_context3) {
       while (1) {
         switch (_context3.prev = _context3.next) {
           case 0:
@@ -281,8 +281,8 @@ function mergeConfigs(a, b) {
         throw new Error("Track config has not been properly regularized: ".concat(aTracks, " ").concat(bTracks));
       }
     } else if (!noRecursiveMerge(prop) && prop in a && // @ts-ignore
-    (0, _typeof2["default"])(b[prop]) === 'object' && // @ts-ignore
-    (0, _typeof2["default"])(a[prop]) === 'object') {
+    (0, _typeof2.default)(b[prop]) === 'object' && // @ts-ignore
+    (0, _typeof2.default)(a[prop]) === 'object') {
       // @ts-ignore
       a[prop] = (0, _util.deepUpdate)(a[prop], b[prop]);
     } else if (prop === 'dataRoot') {
@@ -337,17 +337,17 @@ function loadIncludes(_x3) {
 }
 
 function _loadIncludes() {
-  _loadIncludes = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee6(inputConfig) {
+  _loadIncludes = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(inputConfig) {
     var loadRecur, _loadRecur;
 
-    return _regenerator["default"].wrap(function _callee6$(_context6) {
+    return _regenerator.default.wrap(function _callee6$(_context6) {
       while (1) {
         switch (_context6.prev = _context6.next) {
           case 0:
             _loadRecur = function _loadRecur3() {
-              _loadRecur = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee5(config, upstreamConf) {
+              _loadRecur = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(config, upstreamConf) {
                 var sourceUrl, newUpstreamConf, includes, loads, includedDataObjects;
-                return _regenerator["default"].wrap(function _callee5$(_context5) {
+                return _regenerator.default.wrap(function _callee5$(_context5) {
                   while (1) {
                     switch (_context5.prev = _context5.next) {
                       case 0:
@@ -374,9 +374,9 @@ function _loadIncludes() {
                         includes = fillTemplates(regularizeIncludes(config.include || []), newUpstreamConf);
                         delete config.include;
                         loads = includes.map( /*#__PURE__*/function () {
-                          var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(include) {
+                          var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(include) {
                             var includedData;
-                            return _regenerator["default"].wrap(function _callee4$(_context4) {
+                            return _regenerator.default.wrap(function _callee4$(_context4) {
                               while (1) {
                                 switch (_context4.prev = _context4.next) {
                                   case 0:
@@ -481,7 +481,7 @@ function fillTemplates(subconfig, config) {
     for (var i = 0; i < subconfig.length; i += 1) {
       subconfig[i] = fillTemplates(subconfig[i], config);
     }
-  } else if ((0, _typeof2["default"])(subconfig) === 'object') {
+  } else if ((0, _typeof2.default)(subconfig) === 'object') {
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
     var sub = subconfig;
 

package/dist/JBrowse1Connection/jb1ConfigParse.d.ts

@@ -1,11 +1,11 @@
-import { Config } from './types';
-export declare function parseJB1Json(config: Config | string, url: string): Config;
-export declare function parseJB1Conf(config: string, url: string): Config;
-/**
- * Applies defaults and any other necessary tweaks to the loaded configuration.
- * @param conf - the object containing the configuration, which it modifies
- * in-place
- * @param url - URL of the config file
- * @returns the same object it was passed
- */
-export declare function regularizeConf(conf: Config, url: string): Config;
+import { Config } from './types';
+export declare function parseJB1Json(config: Config | string, url: string): Config;
+export declare function parseJB1Conf(config: string, url: string): Config;
+/**
+ * Applies defaults and any other necessary tweaks to the loaded configuration.
+ * @param conf - the object containing the configuration, which it modifies
+ * in-place
+ * @param url - URL of the config file
+ * @returns the same object it was passed
+ */
+export declare function regularizeConf(conf: Config, url: string): Config;

package/dist/JBrowse1Connection/jb1ConfigParse.js

@@ -25,7 +25,7 @@ var _util2 = require("./util");
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 function parseJB1Json(config, url) {
   if (typeof config === 'string') {
@@ -97,7 +97,7 @@ function parse(text, url) {
         var path = section.concat(keyPath).join('.');
 
         if (operation === '+=') {
-          var existing = (0, _getValue["default"])(data, path);
+          var existing = (0, _getValue.default)(data, path);
 
           if (existing) {
             if (!Array.isArray(existing)) {
@@ -119,7 +119,7 @@ function parse(text, url) {
           parsedValue = false;
         }
 
-        (0, _setValue["default"])(data, path, parsedValue);
+        (0, _setValue.default)(data, path, parsedValue);
       } catch (e) {
         throw new Error("syntax error".concat(url ? " in ".concat(url) : '').concat(lineNumber ? " at line ".concat(lineNumber - 1) : ''));
       }
@@ -148,7 +148,7 @@ function parse(text, url) {
       keyPath = match[1].trim().split(/\s*\.\s*/);
       var _match = match;
 
-      var _match2 = (0, _slicedToArray2["default"])(_match, 3);
+      var _match2 = (0, _slicedToArray2.default)(_match, 3);
 
       operation = _match2[2];
 
@@ -278,11 +278,11 @@ function regularizeConf(conf, url) {
     var addBase = [];
 
     if (conf.tracks) {
-      addBase.push.apply(addBase, (0, _toConsumableArray2["default"])(conf.tracks));
+      addBase.push.apply(addBase, (0, _toConsumableArray2.default)(conf.tracks));
     }
 
     if (conf.stores) {
-      addBase.push.apply(addBase, (0, _toConsumableArray2["default"])(Object.values(conf.stores)));
+      addBase.push.apply(addBase, (0, _toConsumableArray2.default)(Object.values(conf.stores)));
     }
 
     if (conf.names) {

package/dist/JBrowse1Connection/jb1ToJb2.d.ts

@@ -1,47 +1,47 @@
-import { Track, RefSeqs } from './types';
-interface Jb2Track {
-    trackId: string;
-    name: string;
-    description?: string;
-    category?: string[];
-    adapter?: Jb2Adapter;
-    type?: string;
-    defaultRendering?: string;
-}
-interface Jb2Adapter {
-    type: string;
-    features?: Jb2Feature[];
-    bamLocation?: Jb2Location;
-    cramLocation?: Jb2Location;
-    craiLocation?: Jb2Location;
-    fastaLocation?: Jb2Location;
-    faiLocation?: Jb2Location;
-    gziLocation?: Jb2Location;
-    twoBitLocation?: Jb2Location;
-    bigWigLocation?: Jb2Location;
-    bigBedLocation?: Jb2Location;
-    vcfGzLocation?: Jb2Location;
-    gffGzLocation?: Jb2Location;
-    bedGzLocation?: Jb2Location;
-    index?: {
-        location: Jb2Location;
-        indexType?: string;
-    };
-    rootUrlTemplate?: Jb2Location;
-    sequenceAdapter?: Jb2Adapter;
-}
-interface Jb2Feature {
-    refName: string;
-    uniqueId: string;
-    start: number;
-    end: number;
-}
-interface Jb2Location {
-    uri?: string;
-    localPath?: string;
-    blobId?: string;
-    locationType?: string;
-}
-export declare function convertTrackConfig(jb1TrackConfig: Track, dataRoot: string, sequenceAdapter: Jb2Adapter): Jb2Track;
-export declare function createRefSeqsAdapter(refSeqs: string | RefSeqs): Promise<Jb2Adapter>;
-export {};
+import { Track, RefSeqs } from './types';
+interface Jb2Track {
+    trackId: string;
+    name: string;
+    description?: string;
+    category?: string[];
+    adapter?: Jb2Adapter;
+    type?: string;
+    defaultRendering?: string;
+}
+interface Jb2Adapter {
+    type: string;
+    features?: Jb2Feature[];
+    bamLocation?: Jb2Location;
+    cramLocation?: Jb2Location;
+    craiLocation?: Jb2Location;
+    fastaLocation?: Jb2Location;
+    faiLocation?: Jb2Location;
+    gziLocation?: Jb2Location;
+    twoBitLocation?: Jb2Location;
+    bigWigLocation?: Jb2Location;
+    bigBedLocation?: Jb2Location;
+    vcfGzLocation?: Jb2Location;
+    gffGzLocation?: Jb2Location;
+    bedGzLocation?: Jb2Location;
+    index?: {
+        location: Jb2Location;
+        indexType?: string;
+    };
+    rootUrlTemplate?: Jb2Location;
+    sequenceAdapter?: Jb2Adapter;
+}
+interface Jb2Feature {
+    refName: string;
+    uniqueId: string;
+    start: number;
+    end: number;
+}
+interface Jb2Location {
+    uri?: string;
+    localPath?: string;
+    blobId?: string;
+    locationType?: string;
+}
+export declare function convertTrackConfig(jb1TrackConfig: Track, dataRoot: string, sequenceAdapter: Jb2Adapter): Jb2Track;
+export declare function createRefSeqsAdapter(refSeqs: string | RefSeqs): Promise<Jb2Adapter>;
+export {};

package/dist/JBrowse1Connection/jb1ToJb2.js

@@ -22,7 +22,7 @@ var _tracks = require("@jbrowse/core/util/tracks");
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 function convertTrackConfig(jb1TrackConfig, dataRoot, sequenceAdapter) {
   var jb2TrackConfig = {
@@ -441,9 +441,9 @@ function createRefSeqsAdapter(_x) {
 }
 
 function _createRefSeqsAdapter() {
-  _createRefSeqsAdapter = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(refSeqs) {
+  _createRefSeqsAdapter = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(refSeqs) {
     var refSeqsJson, refSeqsData;
-    return _regenerator["default"].wrap(function _callee$(_context) {
+    return _regenerator.default.wrap(function _callee$(_context) {
       while (1) {
         switch (_context.prev = _context.next) {
           case 0:

package/dist/JBrowse1Connection/model.d.ts

@@ -1,4 +1,15 @@
-export default function _default(pluginManager: any): import("mobx-state-tree").IModelType<import("mobx-state-tree").ModelProperties & {
-    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
-    type: import("mobx-state-tree").ISimpleType<"JBrowse1Connection">;
-}, any, any, any>;
+export default function _default(pluginManager: any): import("mobx-state-tree").IModelType<{
+    name: import("mobx-state-tree").ISimpleType<string>;
+    tracks: import("mobx-state-tree").IArrayType<any>;
+} & {
+    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+    type: import("mobx-state-tree").ISimpleType<"JBrowse1Connection">;
+}, {
+    afterAttach(): void;
+    addTrackConf(trackConf: any): any;
+    addTrackConfs(trackConfs: any): any[];
+    setTrackConfs(trackConfs: any): import("mobx-state-tree").IMSTArray<any> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<any>>;
+    clear(): void;
+} & {
+    connect(): void;
+}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/JBrowse1Connection/model.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = _default;
+exports.default = _default;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -23,7 +23,7 @@ var _jb1ToJb = require("./jb1ToJb2");
 
 function _default(pluginManager) {
   return _mobxStateTree.types.compose('JBrowse1Connection', (0, _models.BaseConnectionModelFactory)(pluginManager), _mobxStateTree.types.model({
-    configuration: (0, _configuration.ConfigurationReference)(_configSchema["default"]),
+    configuration: (0, _configuration.ConfigurationReference)(_configSchema.default),
     type: _mobxStateTree.types.literal('JBrowse1Connection')
   }).actions(function (self) {
     return {
@@ -47,7 +47,7 @@ function _default(pluginManager) {
             return jb2Track;
           });
           self.setTrackConfs(jb2Tracks);
-        })["catch"](function (error) {
+        }).catch(function (error) {
           console.error(error);
           session.notify("There was a problem connecting to the JBrowse 1 data directory \"".concat(self.name, "\". Please make sure you have entered a valid location. The error that was thrown is: \"").concat(error, "\""), 'error');
           session.breakConnection(self.configuration);

package/dist/JBrowse1Connection/types.d.ts

@@ -1,91 +1,91 @@
-export interface ProtoTrack {
-    backendVersion?: number;
-    baseUrl?: string;
-    category?: string;
-    config?: Track;
-    dataRoot?: string;
-    features?: Feature[];
-    histograms?: Track;
-    index?: number;
-    key?: string;
-    label?: string;
-    metadata?: Metadata;
-    store?: Store | string;
-    storeClass?: string;
-    type?: string;
-    urlTemplate?: string;
-    baiUrlTemplate?: string;
-    craiUrlTemplate?: string;
-    tbiUrlTemplate?: string;
-    csiUrlTemplate?: string;
-    faiUrlTemplate?: string;
-    gziUrlTemplate?: string;
-    useAsRefSeqStore?: boolean;
-}
-export interface Track extends ProtoTrack {
-    label: string;
-}
-export interface Metadata {
-    category?: string;
-    description?: string;
-    Description?: string;
-}
-export interface Feature {
-    seq_id: string;
-    start: number;
-    end: number;
-    name?: string;
-}
-export interface Source {
-    url: string;
-    name?: string;
-    type?: string;
-}
-export interface TrackMetadata {
-    sources?: string | Source | (string | Source)[] | Record<string, Source>;
-}
-export interface Store extends ProtoTrack {
-    name?: string;
-}
-export interface Names {
-    baseUrl?: string;
-}
-export interface RefSeq {
-    name: string;
-    length: number;
-    end: number;
-    start: number;
-}
-export interface RefSeqs {
-    url?: string;
-    data?: RefSeq[];
-}
-export interface Include {
-    url: string;
-    cacheBuster?: boolean;
-    format?: string;
-    version?: number;
-}
-export interface Config {
-    baseUrl?: string;
-    cacheBuster?: boolean;
-    dataRoot?: string;
-    include?: string[];
-    names?: Record<string, string>;
-    nameUrl?: string;
-    refSeqs?: string | RefSeqs;
-    sourceUrl?: string;
-    stores?: Record<string, Store>;
-    trackMetadata?: TrackMetadata;
-    tracks?: Track | Track[] | Record<string, Track | ProtoTrack>;
-}
-export interface UriLocation {
-    uri: string;
-    baseUri?: string;
-    locationType: 'UriLocation';
-}
-export interface LocalPathLocation {
-    localPath: string;
-    locationType: 'LocalPathLocation';
-}
-export declare type JBLocation = UriLocation | LocalPathLocation;
+export interface ProtoTrack {
+    backendVersion?: number;
+    baseUrl?: string;
+    category?: string;
+    config?: Track;
+    dataRoot?: string;
+    features?: Feature[];
+    histograms?: Track;
+    index?: number;
+    key?: string;
+    label?: string;
+    metadata?: Metadata;
+    store?: Store | string;
+    storeClass?: string;
+    type?: string;
+    urlTemplate?: string;
+    baiUrlTemplate?: string;
+    craiUrlTemplate?: string;
+    tbiUrlTemplate?: string;
+    csiUrlTemplate?: string;
+    faiUrlTemplate?: string;
+    gziUrlTemplate?: string;
+    useAsRefSeqStore?: boolean;
+}
+export interface Track extends ProtoTrack {
+    label: string;
+}
+export interface Metadata {
+    category?: string;
+    description?: string;
+    Description?: string;
+}
+export interface Feature {
+    seq_id: string;
+    start: number;
+    end: number;
+    name?: string;
+}
+export interface Source {
+    url: string;
+    name?: string;
+    type?: string;
+}
+export interface TrackMetadata {
+    sources?: string | Source | (string | Source)[] | Record<string, Source>;
+}
+export interface Store extends ProtoTrack {
+    name?: string;
+}
+export interface Names {
+    baseUrl?: string;
+}
+export interface RefSeq {
+    name: string;
+    length: number;
+    end: number;
+    start: number;
+}
+export interface RefSeqs {
+    url?: string;
+    data?: RefSeq[];
+}
+export interface Include {
+    url: string;
+    cacheBuster?: boolean;
+    format?: string;
+    version?: number;
+}
+export interface Config {
+    baseUrl?: string;
+    cacheBuster?: boolean;
+    dataRoot?: string;
+    include?: string[];
+    names?: Record<string, string>;
+    nameUrl?: string;
+    refSeqs?: string | RefSeqs;
+    sourceUrl?: string;
+    stores?: Record<string, Store>;
+    trackMetadata?: TrackMetadata;
+    tracks?: Track | Track[] | Record<string, Track | ProtoTrack>;
+}
+export interface UriLocation {
+    uri: string;
+    baseUri?: string;
+    locationType: 'UriLocation';
+}
+export interface LocalPathLocation {
+    localPath: string;
+    locationType: 'LocalPathLocation';
+}
+export declare type JBLocation = UriLocation | LocalPathLocation;