@jbrowse/plugin-data-management 2.5.0 → 2.6.1

package/esm/AddTrackWidget/components/PasteConfigWorkflow.js.map

@@ -1 +1 @@
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package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts

@@ -1,5 +1,6 @@
+import React from 'react';
 import { AddTrackModel } from '../model';
 declare const TextIndexingConfig: ({ model, }: {
     model: AddTrackModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default TextIndexingConfig;

package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts

@@ -1,5 +1,6 @@
+import React from 'react';
 import { AddTrackModel } from '../model';
 declare const TrackAdapterSelector: ({ model }: {
     model: AddTrackModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default TrackAdapterSelector;

package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts

@@ -1,6 +1,7 @@
+import React from 'react';
 import { AddTrackModel } from '../model';
 declare function TrackSourceSelect({ model }: {
     model: AddTrackModel;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof TrackSourceSelect;
 export default _default;

package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts

@@ -1,5 +1,6 @@
+import React from 'react';
 import { AddTrackModel } from '../model';
 declare const TrackTypeSelector: ({ model }: {
     model: AddTrackModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default TrackTypeSelector;

package/esm/AssemblyManager/AssemblyAddForm.d.ts

@@ -1,5 +1,6 @@
+import React from 'react';
 declare const AssemblyAddForm: ({ rootModel, setFormOpen, }: {
     rootModel: any;
     setFormOpen: Function;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default AssemblyAddForm;

package/esm/AssemblyManager/AssemblyEditor.d.ts

@@ -1,4 +1,5 @@
+import React from 'react';
 declare const AssemblyEditor: ({ assembly, }: {
     assembly: any;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default AssemblyEditor;

package/esm/AssemblyManager/AssemblyManager.d.ts

@@ -1,5 +1,6 @@
+import React from 'react';
 declare const AssemblyManager: ({ rootModel, onClose, }: {
     rootModel: any;
     onClose: (arg: boolean) => void;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default AssemblyManager;

package/esm/AssemblyManager/AssemblyTable.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 declare const AssemblyTable: ({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }: {
     rootModel: {
@@ -8,5 +9,5 @@ declare const AssemblyTable: ({ rootModel, setIsAssemblyBeingEdited, setAssembly
     };
     setIsAssemblyBeingEdited(arg: boolean): void;
     setAssemblyBeingEdited(arg: AnyConfigurationModel): void;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default AssemblyTable;

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts

@@ -1,5 +1,6 @@
+import React from 'react';
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const HierarchicalTrackSelectorContainer: ({ model, toolbarHeight, overrideDimensions, }: {
     model: HierarchicalTrackSelectorModel;
@@ -6,5 +7,5 @@ declare const HierarchicalTrackSelectorContainer: ({ model, toolbarHeight, overr
         width: number;
         height: number;
     } | undefined;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default HierarchicalTrackSelectorContainer;

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js

@@ -7,9 +7,7 @@ import HierarchicalHeader from './tree/HierarchicalHeader';
 // Don't use autosizer in jest and instead hardcode a height, otherwise fails
 // jest tests
 const AutoSizedHierarchicalTree = ({ tree, model, offset, }) => {
-    return typeof jest === 'undefined' ? (React.createElement(AutoSizer, { disableWidth: true }, ({ height }) => {
-        return (React.createElement(HierarchicalTree, { height: (height || offset) - offset, model: model, tree: tree }));
-    })) : (React.createElement(HierarchicalTree, { height: 9000, model: model, tree: tree }));
+    return typeof jest === 'undefined' ? (React.createElement(AutoSizer, { disableWidth: true }, args => (React.createElement(HierarchicalTree, { height: (args.height || offset) - offset, model: model, tree: tree })))) : (React.createElement(HierarchicalTree, { height: 9000, model: model, tree: tree }));
 };
 const Wrapper = ({ overrideDimensions, children, }) => {
     return overrideDimensions ? (React.createElement("div", { style: { ...overrideDimensions } }, children)) : (React.createElement(React.Fragment, null, children));
@@ -20,13 +18,10 @@ const HierarchicalTrackSelectorContainer = observer(function ({ model, toolbarHe
         React.createElement(HierarchicalFab, { model: model })));
 });
 const HierarchicalTrackSelector = observer(function ({ model, toolbarHeight = 0, }) {
-    const [assemblyIdx, setAssemblyIdx] = useState(0);
     const [headerHeight, setHeaderHeight] = useState(0);
-    const { assemblyNames } = model;
-    const assemblyName = assemblyNames[assemblyIdx];
-    return assemblyName ? (React.createElement(React.Fragment, null,
-        React.createElement(HierarchicalHeader, { model: model, setHeaderHeight: setHeaderHeight, setAssemblyIdx: setAssemblyIdx }),
-        React.createElement(AutoSizedHierarchicalTree, { tree: model.hierarchy(assemblyName), model: model, offset: toolbarHeight + headerHeight }))) : null;
+    return (React.createElement(React.Fragment, null,
+        React.createElement(HierarchicalHeader, { model: model, setHeaderHeight: setHeaderHeight }),
+        React.createElement(AutoSizedHierarchicalTree, { tree: model.hierarchy, model: model, offset: toolbarHeight + headerHeight })));
 });
 export default HierarchicalTrackSelectorContainer;
 //# sourceMappingURL=HierarchicalTrackSelector.js.map

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map

@@ -1 +1 @@
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+{"version":3,"file":"HierarchicalTrackSelector.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,SAAS,MAAM,8BAA8B,CAAA;AAIpD,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,gBAAgB,MAAM,yBAAyB,CAAA;AACtD,OAAO,kBAAkB,MAAM,2BAA2B,CAAA;AAE1D,6EAA6E;AAC7E,aAAa;AACb,MAAM,yBAAyB,GAAG,CAAC,EACjC,IAAI,EACJ,KAAK,EACL,MAAM,GAKP,EAAE,EAAE;IACH,OAAO,OAAO,IAAI,KAAK,WAAW,CAAC,CAAC,CAAC,CACnC,oBAAC,SAAS,IAAC,YAAY,UACpB,IAAI,CAAC,EAAE,CAAC,CACP,oBAAC,gBAAgB,IACf,MAAM,EAAE,CAAC,IAAI,CAAC,MAAM,IAAI,MAAM,CAAC,GAAG,MAAM,EACxC,KAAK,EAAE,KAAK,EACZ,IAAI,EAAE,IAAI,GACV,CACH,CACS,CACb,CAAC,CAAC,CAAC,CACF,oBAAC,gBAAgB,IAAC,MAAM,EAAE,IAAI,EAAE,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,IAAI,GAAI,CAC7D,CAAA;AACH,CAAC,CAAA;AAED,MAAM,OAAO,GAAG,CAAC,EACf,kBAAkB,EAClB,QAAQ,GAIT,EAAE,EAAE;IACH,OAAO,kBAAkB,CAAC,CAAC,CAAC,CAC1B,6BAAK,KAAK,EAAE,EAAE,GAAG,kBAAkB,EAAE,IAAG,QAAQ,CAAO,CACxD,CAAC,CAAC,CAAC,CACF,0CAAG,QAAQ,CAAI,CAChB,CAAA;AACH,CAAC,CAAA;AACD,MAAM,kCAAkC,GAAG,QAAQ,CAAC,UAAU,EAC5D,KAAK,EACL,aAAa,EACb,kBAAkB,GAKnB;IACC,OAAO,CACL,oBAAC,OAAO,IAAC,kBAAkB,EAAE,kBAAkB;QAC7C,oBAAC,yBAAyB,IAAC,KAAK,EAAE,KAAK,EAAE,aAAa,EAAE,aAAa,GAAI;QACzE,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI,CACzB,CACX,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,yBAAyB,GAAG,QAAQ,CAAC,UAAU,EACnD,KAAK,EACL,aAAa,GAAG,CAAC,GAIlB;IACC,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IACnD,OAAO,CACL;QACE,oBAAC,kBAAkB,IAAC,KAAK,EAAE,KAAK,EAAE,eAAe,EAAE,eAAe,GAAI;QACtE,oBAAC,yBAAyB,IACxB,IAAI,EAAE,KAAK,CAAC,SAAS,EACrB,KAAK,EAAE,KAAK,EACZ,MAAM,EAAE,aAAa,GAAG,YAAY,GACpC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,kCAAkC,CAAA"}

package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts

@@ -1,5 +1,6 @@
+import React from 'react';
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts

@@ -1,12 +1,12 @@
-declare function CloseConnectionDialog({ modalInfo, setModalInfo, }: {
+import React from 'react';
+declare const _default: ({ modalInfo, onClose, }: {
     modalInfo?: {
-        name?: string;
+        name?: string | undefined;
         dereferenceTypeCount?: {
             [key: string]: number;
-        };
-        safelyBreakConnection?: Function;
-    };
-    setModalInfo: Function;
-}): JSX.Element;
-declare const _default: typeof CloseConnectionDialog;
+        } | undefined;
+        safelyBreakConnection?: (() => void) | undefined;
+    } | undefined;
+    onClose: () => void;
+}) => React.JSX.Element;
 export default _default;

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js

@@ -1,26 +1,22 @@
 import React from 'react';
-import { Dialog, DialogTitle, DialogContent, DialogContentText, Button, List, ListItem, DialogActions, } from '@mui/material';
+import { DialogContent, DialogContentText, Button, List, ListItem, DialogActions, } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
 import { observer } from 'mobx-react';
-function CloseConnectionDialog({ modalInfo = {}, setModalInfo, }) {
+export default observer(function CloseConnectionDialog({ modalInfo = {}, onClose, }) {
     const { name, dereferenceTypeCount, safelyBreakConnection } = modalInfo;
-    return (React.createElement(Dialog, { open: true },
-        React.createElement(DialogTitle, null,
-            "Close connection \"",
-            name,
-            "\""),
+    return (React.createElement(Dialog, { open: true, maxWidth: "lg", title: `Close connection "${name}"` },
         React.createElement(DialogContent, null,
             dereferenceTypeCount ? (React.createElement(React.Fragment, null,
                 React.createElement(DialogContentText, null, "Closing this connection will close:"),
                 React.createElement(List, null, Object.entries(dereferenceTypeCount).map(([key, value]) => (React.createElement(ListItem, { key: key }, `${value} ${key}`)))))) : null,
             React.createElement(DialogContentText, null, "Are you sure you want to close this connection?")),
         React.createElement(DialogActions, null,
-            React.createElement(Button, { onClick: () => setModalInfo(), color: "primary" }, "Cancel"),
+            React.createElement(Button, { onClick: () => onClose(), color: "primary" }, "Cancel"),
             React.createElement(Button, { variant: "contained", onClick: modalInfo
                     ? () => {
                         safelyBreakConnection === null || safelyBreakConnection === void 0 ? void 0 : safelyBreakConnection();
-                        setModalInfo();
+                        onClose();
                     }
                     : () => { }, color: "primary" }, "OK"))));
-}
-export default observer(CloseConnectionDialog);
+});
 //# sourceMappingURL=CloseConnectionDialog.js.map

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"CloseConnectionDialog.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,aAAa,EACb,iBAAiB,EACjB,MAAM,EACN,IAAI,EACJ,QAAQ,EACR,aAAa,GACd,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,eAAe,QAAQ,CAAC,SAAS,qBAAqB,CAAC,EACrD,SAAS,GAAG,EAAE,EACd,OAAO,GAQR;IACC,MAAM,EAAE,IAAI,EAAE,oBAAoB,EAAE,qBAAqB,EAAE,GAAG,SAAS,CAAA;IACvE,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,KAAK,EAAE,qBAAqB,IAAI,GAAG;QAC5D,oBAAC,aAAa;YACX,oBAAoB,CAAC,CAAC,CAAC,CACtB;gBACE,oBAAC,iBAAiB,8CAEE;gBACpB,oBAAC,IAAI,QACF,MAAM,CAAC,OAAO,CAAC,oBAAoB,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAC1D,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,IAAG,GAAG,KAAK,IAAI,GAAG,EAAE,CAAY,CACnD,CAAC,CACG,CACN,CACJ,CAAC,CAAC,CAAC,IAAI;YACR,oBAAC,iBAAiB,0DAEE,CACN;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,EAAE,EAAE,KAAK,EAAC,SAAS,aAExC;YACT,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EACL,SAAS;oBACP,CAAC,CAAC,GAAG,EAAE;wBACH,qBAAqB,aAArB,qBAAqB,uBAArB,qBAAqB,EAAI,CAAA;wBACzB,OAAO,EAAE,CAAA;oBACX,CAAC;oBACH,CAAC,CAAC,GAAG,EAAE,GAAE,CAAC,EAEd,KAAK,EAAC,SAAS,SAGR,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA"}

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 declare function DeleteConnectionDialog({ deleteDialogDetails, session, handleClose, }: {
@@ -7,6 +8,6 @@ declare function DeleteConnectionDialog({ deleteDialogDetails, session, handleCl
     };
     session: AbstractSessionModel;
     handleClose: () => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof DeleteConnectionDialog;
 export default _default;

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts

@@ -1,9 +1,10 @@
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 declare function ManageConnectionsDlg({ session, handleClose, breakConnection, }: {
     handleClose: () => void;
     session: AbstractSessionModel;
     breakConnection: (conf: AnyConfigurationModel, arg: boolean) => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof ManageConnectionsDlg;
 export default _default;

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts

@@ -1,10 +1,10 @@
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 export declare function ellipses(slug: string): string;
-declare function ToggleConnectionDialog({ session, handleClose, breakConnection, }: {
+declare const _default: ({ session, handleClose, breakConnection, }: {
     handleClose: () => void;
     session: AbstractSessionModel;
     breakConnection: (arg: AnyConfigurationModel) => void;
-}): JSX.Element;
-declare const _default: typeof ToggleConnectionDialog;
+}) => React.JSX.Element;
 export default _default;

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js

@@ -13,32 +13,37 @@ const useStyles = makeStyles()(theme => ({
         margin: theme.spacing(4),
     },
 }));
-function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
+const ConnectionRow = observer(function ConnectionRow({ conf, session, breakConnection, }) {
+    const { connectionInstances: instances = [] } = session;
+    const name = readConfObject(conf, 'name');
+    const assemblyNames = readConfObject(conf, 'assemblyNames');
+    const found = instances.find(conn => name === conn.name);
+    return (React.createElement(FormControlLabel, { key: conf.connectionId, control: React.createElement(Checkbox, { checked: !!found, onChange: () => {
+                var _a;
+                if (found) {
+                    breakConnection(conf);
+                }
+                else {
+                    (_a = session.makeConnection) === null || _a === void 0 ? void 0 : _a.call(session, conf);
+                }
+            }, color: "primary" }), label: [
+            name,
+            assemblyNames.length ? `(${ellipses(assemblyNames.join(','))})` : '',
+        ]
+            .filter(f => !!f)
+            .join(' ') }));
+});
+const ConnectionList = observer(function ConnectionsList({ session, breakConnection, }) {
     const { classes } = useStyles();
-    const { connections, connectionInstances: instances = [] } = session;
+    return (React.createElement("div", { className: classes.connectionContainer }, !session.connections.length ? (React.createElement(Typography, null, "No connections found")) : (session.connections.map((conf, idx) => (React.createElement("div", { key: conf.name + '_' + idx },
+        React.createElement(ConnectionRow, { conf: conf, session: session, breakConnection: breakConnection })))))));
+});
+export default observer(function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
     return (React.createElement(Dialog, { open: true, onClose: handleClose, maxWidth: "lg", title: "Turn on/off connections" },
         React.createElement(DialogContent, null,
             React.createElement(Typography, null, "Use the checkbox to turn on/off connections"),
-            React.createElement("div", { className: classes.connectionContainer },
-                connections.map(conf => {
-                    const name = readConfObject(conf, 'name');
-                    const assemblyNames = readConfObject(conf, 'assemblyNames');
-                    const found = instances.find(conn => name === conn.name);
-                    return (React.createElement(FormControlLabel, { key: conf.connectionId, control: React.createElement(Checkbox, { checked: !!found, onChange: () => {
-                                var _a;
-                                if (found) {
-                                    breakConnection(conf);
-                                }
-                                else {
-                                    (_a = session.makeConnection) === null || _a === void 0 ? void 0 : _a.call(session, conf);
-                                }
-                            }, color: "primary" }), label: `${name} ${assemblyNames.length
-                            ? '(' + ellipses(assemblyNames.join(',')) + ')'
-                            : ''}` }));
-                }),
-                !connections.length ? (React.createElement(Typography, null, "No connections found")) : null)),
+            React.createElement(ConnectionList, { session: session, breakConnection: breakConnection })),
         React.createElement(DialogActions, null,
             React.createElement(Button, { onClick: () => handleClose(), variant: "contained", color: "primary" }, "Close"))));
-}
-export default observer(ToggleConnectionDialog);
+});
 //# sourceMappingURL=ToggleConnectionsDialog.js.map

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,QAAQ,EACR,aAAa,EACb,aAAa,EACb,gBAAgB,EAChB,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,MAAM,EAAE,MAAM,kBAAkB,CAAA;AACzC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAGpC,MAAM,UAAU,QAAQ,CAAC,IAAY;IACnC,OAAO,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAA;AAC5D,CAAC;AAED,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,aAAa,GAAG,QAAQ,CAAC,SAAS,aAAa,CAAC,EACpD,IAAI,EACJ,OAAO,EACP,eAAe,GAKhB;IACC,MAAM,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACvD,MAAM,IAAI,GAAG,cAAc,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA;IACzC,MAAM,aAAa,GAAG,cAAc,CAAC,IAAI,EAAE,eAAe,CAAC,CAAA;IAC3D,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;IACxD,OAAO,CACL,oBAAC,gBAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gBACb,IAAI,KAAK,EAAE;oBACT,eAAe,CAAC,IAAI,CAAC,CAAA;iBACtB;qBAAM;oBACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iBAC/B;YACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE;YACL,IAAI;YACJ,aAAa,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,QAAQ,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;SACrE;aACE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;aAChB,IAAI,CAAC,GAAG,CAAC,GACZ,CACH,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,cAAc,GAAG,QAAQ,CAAC,SAAS,eAAe,CAAC,EACvD,OAAO,EACP,eAAe,GAIhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB,IACxC,CAAC,OAAO,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CAC7B,oBAAC,UAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,CACF,OAAO,CAAC,WAAW,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE,CAAC,CACrC,6BAAK,GAAG,EAAE,IAAI,CAAC,IAAI,GAAG,GAAG,GAAG,GAAG;QAC7B,oBAAC,aAAa,IACZ,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,OAAO,EAChB,eAAe,EAAE,eAAe,GAChC,CACE,CACP,CAAC,CACH,CACG,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,QAAQ,CAAC,SAAS,sBAAsB,CAAC,EACtD,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,OAAO,CACL,oBAAC,MAAM,IACL,IAAI,QACJ,OAAO,EAAE,WAAW,EACpB,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,yBAAyB;QAE/B,oBAAC,aAAa;YACZ,oBAAC,UAAU,sDAAyD;YACpE,oBAAC,cAAc,IAAC,OAAO,EAAE,OAAO,EAAE,eAAe,EAAE,eAAe,GAAI,CACxD;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA"}

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 export default function FacetFilters({ rows, columns, dispatch, filters, width, }: {
     rows: Record<string, unknown>[];
     filters: Record<string, string[]>;
@@ -9,4 +10,4 @@ export default function FacetFilters({ rows, columns, dispatch, filters, width,
         val: string[];
     }) => void;
     width: number;
-}): JSX.Element;
+}): React.JSX.Element;

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts

@@ -1,7 +1,8 @@
+import React from 'react';
 import { HierarchicalTrackSelectorModel } from '../../model';
 declare function FacetedDlg(props: {
     handleClose: () => void;
     model: HierarchicalTrackSelectorModel;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof FacetedDlg;
 export default _default;

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { HierarchicalTrackSelectorModel } from '../../model';
 export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, setShowOptions, showOptions, hideSparse, useShoppingCart, filterText, model, }: {
     setFilterText: (arg: string) => void;
@@ -9,4 +10,4 @@ export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHi
     useShoppingCart: boolean;
     hideSparse: boolean;
     model: HierarchicalTrackSelectorModel;
-}): JSX.Element;
+}): React.JSX.Element;

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts

@@ -1,3 +1,4 @@
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { HierarchicalTrackSelectorModel } from '../../model';
 export interface InfoArgs {
@@ -7,5 +8,5 @@ export interface InfoArgs {
 }
 declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js

@@ -22,8 +22,8 @@ import { getRootKeys } from './util';
 const nonMetadataKeys = ['category', 'adapter', 'description'];
 const frac = 0.75;
 export default observer(function FacetedSelector({ model, }) {
-    var _a;
-    const { assemblyNames, view, selection } = model;
+    var _a, _b;
+    const { view, selection } = model;
     const { pluginManager } = getEnv(model);
     const { ref, scrollLeft } = useResizeBar();
     const [filterText, setFilterText] = useState('');
@@ -32,17 +32,16 @@ export default observer(function FacetedSelector({ model, }) {
     const [useShoppingCart, setUseShoppingCart] = useState(false);
     const [hideSparse, setHideSparse] = useState(true);
     const [panelWidth, setPanelWidth] = useState(400);
-    const assemblyName = assemblyNames[0];
     const session = getSession(model);
     const filterDebounced = useDebounce(filterText, 400);
+    const tracks = view.tracks;
     const [filters, dispatch] = useReducer((state, update) => {
         return { ...state, [update.key]: update.val };
     }, {});
     const rows = useMemo(() => {
         // metadata is spread onto the object for easier access and sorting
         // by the mui data grid (it's unable to sort by nested objects)
-        return model
-            .trackConfigurations(assemblyName)
+        return model.trackConfigurations
             .filter(conf => matches(filterDebounced, conf, session))
             .map(track => {
             var _a, _b;
@@ -58,14 +57,12 @@ export default observer(function FacetedSelector({ model, }) {
                 ...metadata,
             };
         });
-    }, [assemblyName, model, filterDebounced, session]);
+    }, [model, filterDebounced, session]);
     const filteredNonMetadataKeys = useMemo(() => nonMetadataKeys.filter(f => !hideSparse ? true : rows.map(r => r[f]).filter(f => !!f).length > 5), [hideSparse, rows]);
     const filteredMetadataKeys = useMemo(() => [...new Set(rows.flatMap(row => getRootKeys(row.metadata)))].filter(f => !hideSparse
         ? true
         : rows.map(r => r.metadata[f]).filter(f => !!f).length > 5), [hideSparse, rows]);
-    const fields = useMemo(() => {
-        return ['name', ...filteredNonMetadataKeys, ...filteredMetadataKeys];
-    }, [filteredNonMetadataKeys, filteredMetadataKeys]);
+    const fields = useMemo(() => ['name', ...filteredNonMetadataKeys, ...filteredMetadataKeys], [filteredNonMetadataKeys, filteredMetadataKeys]);
     const [widths, setWidths] = useState({
         name: measureGridWidth(rows.map(r => r.name), { maxWidth: 500, stripHTML: true }) + 15,
         ...Object.fromEntries(filteredNonMetadataKeys.map(e => [
@@ -117,31 +114,35 @@ export default observer(function FacetedSelector({ model, }) {
                         }) },
                         React.createElement(MoreHoriz, null))));
             },
-            width: widthsDebounced.name || 100, // can be undefined before useEffect update
+            width: (_a = widthsDebounced.name) !== null && _a !== void 0 ? _a : 100,
         },
-        ...filteredNonMetadataKeys.map(e => ({
-            field: e,
-            width: widthsDebounced[e] || 100,
-            renderCell: (params) => {
-                const { value } = params;
-                return value ? React.createElement(SanitizedHTML, { html: value }) : '';
-            },
-        })),
-        ...filteredMetadataKeys.map(e => ({
-            field: e,
-            width: widthsDebounced[e] || 100,
-            renderCell: (params) => {
-                const { value } = params;
-                return value ? React.createElement(SanitizedHTML, { html: value }) : '';
-            },
-        })),
+        ...filteredNonMetadataKeys.map(e => {
+            var _a;
+            return ({
+                field: e,
+                width: (_a = widthsDebounced[e]) !== null && _a !== void 0 ? _a : 100,
+                renderCell: (params) => {
+                    const { value } = params;
+                    return value ? React.createElement(SanitizedHTML, { html: value }) : '';
+                },
+            });
+        }),
+        ...filteredMetadataKeys.map(e => {
+            var _a;
+            return ({
+                field: e,
+                width: (_a = widthsDebounced[e]) !== null && _a !== void 0 ? _a : 100,
+                renderCell: (params) => {
+                    const { value } = params;
+                    return value ? React.createElement(SanitizedHTML, { html: value }) : '';
+                },
+            });
+        }),
     ];
-    const shownTrackIds = view.tracks.map(
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    (t) => t.configuration.trackId);
+    const shownTrackIds = tracks.map(t => t.configuration.trackId);
     const arrFilters = Object.entries(filters).filter(f => f[1].length > 0);
     return (React.createElement(React.Fragment, null,
-        info ? (React.createElement(JBrowseMenu, { anchorEl: info === null || info === void 0 ? void 0 : info.target, menuItems: ((_a = session.getTrackActionMenuItems) === null || _a === void 0 ? void 0 : _a.call(session, info.conf)) || [], onMenuItemClick: (_event, callback) => {
+        info ? (React.createElement(JBrowseMenu, { anchorEl: info === null || info === void 0 ? void 0 : info.target, menuItems: ((_b = session.getTrackActionMenuItems) === null || _b === void 0 ? void 0 : _b.call(session, info.conf)) || [], onMenuItemClick: (_event, callback) => {
                 callback();
                 setInfo(undefined);
             }, open: !!info, onClose: () => setInfo(undefined) })) : null,
@@ -156,7 +157,7 @@ export default observer(function FacetedSelector({ model, }) {
                     height: window.innerHeight * frac,
                     width: window.innerWidth * frac - panelWidth,
                 } },
-                React.createElement(ResizeBar, { checkbox: true, widths: Object.values(widths), setWidths: newWidths => setWidths(Object.fromEntries(Object.entries(widths).map((entry, idx) => [
+                React.createElement(ResizeBar, { checkbox: true, widths: Object.values(widths).map(f => f !== null && f !== void 0 ? f : 100), setWidths: newWidths => setWidths(Object.fromEntries(Object.entries(widths).map((entry, idx) => [
                         entry[0],
                         newWidths[idx],
                     ]))), scrollLeft: scrollLeft }),

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js.map

@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts

@@ -1,6 +1,6 @@
+import React from 'react';
 import { HierarchicalTrackSelectorModel } from '../../model';
-declare const _default: ({ model, setAssemblyIdx, }: {
+declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;
-    setAssemblyIdx: Function;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;