npm - @jbrowse/plugin-data-management - Versions diffs - 2.5.0 → 2.6.1 - Mend

@jbrowse/plugin-data-management 2.5.0 → 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (136) hide show

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js CHANGED Viewed

@@ -50,8 +50,8 @@ const util_2 = require("./util");
 const nonMetadataKeys = ['category', 'adapter', 'description'];
 const frac = 0.75;
 exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }) {
-    var _a;
-    const { assemblyNames, view, selection } = model;
+    var _a, _b;
+    const { view, selection } = model;
     const { pluginManager } = (0, util_1.getEnv)(model);
     const { ref, scrollLeft } = (0, ResizeBar_1.useResizeBar)();
     const [filterText, setFilterText] = (0, react_1.useState)('');
@@ -60,17 +60,16 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
     const [useShoppingCart, setUseShoppingCart] = (0, react_1.useState)(false);
     const [hideSparse, setHideSparse] = (0, react_1.useState)(true);
     const [panelWidth, setPanelWidth] = (0, react_1.useState)(400);
-    const assemblyName = assemblyNames[0];
     const session = (0, util_1.getSession)(model);
     const filterDebounced = (0, util_1.useDebounce)(filterText, 400);
+    const tracks = view.tracks;
     const [filters, dispatch] = (0, react_1.useReducer)((state, update) => {
         return { ...state, [update.key]: update.val };
     }, {});
     const rows = (0, react_1.useMemo)(() => {
         // metadata is spread onto the object for easier access and sorting
         // by the mui data grid (it's unable to sort by nested objects)
-        return model
-            .trackConfigurations(assemblyName)
+        return model.trackConfigurations
             .filter(conf => (0, model_1.matches)(filterDebounced, conf, session))
             .map(track => {
             var _a, _b;
@@ -86,14 +85,12 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
                 ...metadata,
             };
         });
-    }, [assemblyName, model, filterDebounced, session]);
+    }, [model, filterDebounced, session]);
     const filteredNonMetadataKeys = (0, react_1.useMemo)(() => nonMetadataKeys.filter(f => !hideSparse ? true : rows.map(r => r[f]).filter(f => !!f).length > 5), [hideSparse, rows]);
     const filteredMetadataKeys = (0, react_1.useMemo)(() => [...new Set(rows.flatMap(row => (0, util_2.getRootKeys)(row.metadata)))].filter(f => !hideSparse
         ? true
         : rows.map(r => r.metadata[f]).filter(f => !!f).length > 5), [hideSparse, rows]);
-    const fields = (0, react_1.useMemo)(() => {
-        return ['name', ...filteredNonMetadataKeys, ...filteredMetadataKeys];
-    }, [filteredNonMetadataKeys, filteredMetadataKeys]);
+    const fields = (0, react_1.useMemo)(() => ['name', ...filteredNonMetadataKeys, ...filteredMetadataKeys], [filteredNonMetadataKeys, filteredMetadataKeys]);
     const [widths, setWidths] = (0, react_1.useState)({
         name: (0, util_1.measureGridWidth)(rows.map(r => r.name), { maxWidth: 500, stripHTML: true }) + 15,
         ...Object.fromEntries(filteredNonMetadataKeys.map(e => [
@@ -145,31 +142,35 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
                         }) },
                         react_1.default.createElement(MoreHoriz_1.default, null))));
             },
-            width: widthsDebounced.name || 100, // can be undefined before useEffect update
+            width: (_a = widthsDebounced.name) !== null && _a !== void 0 ? _a : 100,
         },
-        ...filteredNonMetadataKeys.map(e => ({
-            field: e,
-            width: widthsDebounced[e] || 100,
-            renderCell: (params) => {
-                const { value } = params;
-                return value ? react_1.default.createElement(SanitizedHTML_1.default, { html: value }) : '';
-            },
-        })),
-        ...filteredMetadataKeys.map(e => ({
-            field: e,
-            width: widthsDebounced[e] || 100,
-            renderCell: (params) => {
-                const { value } = params;
-                return value ? react_1.default.createElement(SanitizedHTML_1.default, { html: value }) : '';
-            },
-        })),
+        ...filteredNonMetadataKeys.map(e => {
+            var _a;
+            return ({
+                field: e,
+                width: (_a = widthsDebounced[e]) !== null && _a !== void 0 ? _a : 100,
+                renderCell: (params) => {
+                    const { value } = params;
+                    return value ? react_1.default.createElement(SanitizedHTML_1.default, { html: value }) : '';
+                },
+            });
+        }),
+        ...filteredMetadataKeys.map(e => {
+            var _a;
+            return ({
+                field: e,
+                width: (_a = widthsDebounced[e]) !== null && _a !== void 0 ? _a : 100,
+                renderCell: (params) => {
+                    const { value } = params;
+                    return value ? react_1.default.createElement(SanitizedHTML_1.default, { html: value }) : '';
+                },
+            });
+        }),
     ];
-    const shownTrackIds = view.tracks.map(
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
-    (t) => t.configuration.trackId);
+    const shownTrackIds = tracks.map(t => t.configuration.trackId);
     const arrFilters = Object.entries(filters).filter(f => f[1].length > 0);
     return (react_1.default.createElement(react_1.default.Fragment, null,
-        info ? (react_1.default.createElement(Menu_1.default, { anchorEl: info === null || info === void 0 ? void 0 : info.target, menuItems: ((_a = session.getTrackActionMenuItems) === null || _a === void 0 ? void 0 : _a.call(session, info.conf)) || [], onMenuItemClick: (_event, callback) => {
+        info ? (react_1.default.createElement(Menu_1.default, { anchorEl: info === null || info === void 0 ? void 0 : info.target, menuItems: ((_b = session.getTrackActionMenuItems) === null || _b === void 0 ? void 0 : _b.call(session, info.conf)) || [], onMenuItemClick: (_event, callback) => {
                 callback();
                 setInfo(undefined);
             }, open: !!info, onClose: () => setInfo(undefined) })) : null,
@@ -184,7 +185,7 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
                     height: window.innerHeight * frac,
                     width: window.innerWidth * frac - panelWidth,
                 } },
-                react_1.default.createElement(ResizeBar_1.default, { checkbox: true, widths: Object.values(widths), setWidths: newWidths => setWidths(Object.fromEntries(Object.entries(widths).map((entry, idx) => [
+                react_1.default.createElement(ResizeBar_1.default, { checkbox: true, widths: Object.values(widths).map(f => f !== null && f !== void 0 ? f : 100), setWidths: newWidths => setWidths(Object.fromEntries(Object.entries(widths).map((entry, idx) => [
                         entry[0],
                         newWidths[idx],
                     ]))), scrollLeft: scrollLeft }),

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ 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package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
+import React from 'react';
 import { HierarchicalTrackSelectorModel } from '../../model';
-declare const _default: ({ model, setAssemblyIdx, }: {
+declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;
-    setAssemblyIdx: Function;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;

package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js CHANGED Viewed

@@ -46,7 +46,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         marginBottom: 0,
     },
 }));
-exports.default = (0, mobx_react_1.observer)(function HamburgerMenu({ model, setAssemblyIdx, }) {
+exports.default = (0, mobx_react_1.observer)(function HamburgerMenu({ model, }) {
     const session = (0, util_1.getSession)(model);
     const [menuEl, setMenuEl] = (0, react_1.useState)();
     const [modalInfo, setModalInfo] = (0, react_1.useState)();
@@ -54,7 +54,6 @@ exports.default = (0, mobx_react_1.observer)(function HamburgerMenu({ model, set
     const [connectionToggleOpen, setConnectionToggleOpen] = (0, react_1.useState)(false);
     const [connectionManagerOpen, setConnectionManagerOpen] = (0, react_1.useState)(false);
     const { classes } = useStyles();
-    const { assemblyNames } = model;
     function breakConnection(connectionConf, deletingConnection) {
         const name = (0, configuration_1.readConfObject)(connectionConf, 'name');
         const result = session.prepareToBreakConnection(connectionConf);
@@ -76,26 +75,6 @@ exports.default = (0, mobx_react_1.observer)(function HamburgerMenu({ model, set
             setDeleteDlgDetails({ name, connectionConf });
         }
     }
-    const connectionMenuItems = [
-        {
-            label: 'Turn on/off connections...',
-            onClick: () => setConnectionToggleOpen(true),
-        },
-    ];
-    if ((0, util_1.isSessionModelWithConnections)(session)) {
-        connectionMenuItems.unshift({
-            label: 'Add connection...',
-            onClick: () => {
-                if ((0, util_1.isSessionModelWithWidgets)(session)) {
-                    session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
-                }
-            },
-        });
-        connectionMenuItems.push({
-            label: 'Delete connections...',
-            onClick: () => setConnectionManagerOpen(true),
-        });
-    }
     return (react_1.default.createElement(react_1.default.Fragment, null,
         react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: event => setMenuEl(event.currentTarget) },
             react_1.default.createElement(Menu_2.default, null)),
@@ -103,31 +82,47 @@ exports.default = (0, mobx_react_1.observer)(function HamburgerMenu({ model, set
                 callback();
                 setMenuEl(undefined);
             }, onClose: () => setMenuEl(undefined), menuItems: [
-                {
-                    label: 'Add track...',
-                    onClick: () => {
-                        if ((0, util_1.isSessionModelWithWidgets)(session)) {
-                            session.showWidget(session.addWidget('AddTrackWidget', 'addTrackWidget', {
-                                view: model.view.id,
-                            }));
-                        }
-                    },
-                },
-                ...(session.makeConnection ? connectionMenuItems : []),
-                ...(assemblyNames.length > 1
+                ...((0, util_1.isSessionWithAddTracks)(session)
                     ? [
                         {
-                            label: 'Select assembly...',
-                            subMenu: assemblyNames.map((name, idx) => ({
-                                label: name,
-                                onClick: () => setAssemblyIdx(idx),
-                            })),
+                            label: 'Add track...',
+                            onClick: () => {
+                                if ((0, util_1.isSessionModelWithWidgets)(session)) {
+                                    session.showWidget(session.addWidget('AddTrackWidget', 'addTrackWidget', {
+                                        view: model.view.id,
+                                    }));
+                                }
+                            },
+                        },
+                    ]
+                    : []),
+                ...((0, util_1.isSessionModelWithConnections)(session)
+                    ? [
+                        {
+                            label: 'Turn on/off connections...',
+                            onClick: () => setConnectionToggleOpen(true),
+                        },
+                    ]
+                    : []),
+                ...((0, util_1.isSessionModelWithConnectionEditing)(session)
+                    ? [
+                        {
+                            label: 'Add connection...',
+                            onClick: () => {
+                                if ((0, util_1.isSessionModelWithWidgets)(session)) {
+                                    session.showWidget(session.addWidget('AddConnectionWidget', 'addConnectionWidget'));
+                                }
+                            },
+                        },
+                        {
+                            label: 'Delete connections...',
+                            onClick: () => setConnectionManagerOpen(true),
                         },
                     ]
                     : []),
             ] }),
-        react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null) },
-            modalInfo ? (react_1.default.createElement(CloseConnectionDlg, { modalInfo: modalInfo, setModalInfo: setModalInfo })) : null,
+        react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement(react_1.default.Fragment, null) },
+            modalInfo ? (react_1.default.createElement(CloseConnectionDlg, { modalInfo: modalInfo, onClose: () => setModalInfo(undefined) })) : null,
             deleteDlgDetails ? (react_1.default.createElement(DeleteConnectionDlg, { handleClose: () => setDeleteDlgDetails(undefined), deleteDialogDetails: deleteDlgDetails, session: session })) : null,
             connectionManagerOpen ? (react_1.default.createElement(ManageConnectionsDlg, { handleClose: () => setConnectionManagerOpen(false), breakConnection: breakConnection, session: session })) : null,
             connectionToggleOpen ? (react_1.default.createElement(ToggleConnectionsDlg, { handleClose: () => setConnectionToggleOpen(false), session: session, breakConnection: breakConnection })) : null)));

package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"HamburgerMenu.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuD;AACvD,4CAA0C;AAC1C,uCAA0C;AAC1C,2CAAqC;AACrC,iEAA+C;AAC/C,~~6CAI2B~~;AAC3B,+DAGoC;AAEpC,QAAQ;AACR,oEAA+C;AAK/C,kBAAkB;AAClB,MAAM,kBAAkB,GAAG,IAAA,YAAI,EAC7B,GAAG,EAAE,mDAAQ,kCAAkC,GAAC,CACjD,CAAA;AACD,MAAM,mBAAmB,GAAG,IAAA,YAAI,EAC9B,GAAG,EAAE,mDAAQ,mCAAmC,GAAC,CAClD,CAAA;AACD,MAAM,oBAAoB,GAAG,IAAA,YAAI,EAC/B,GAAG,EAAE,mDAAQ,oCAAoC,GAAC,CACnD,CAAA;AACD,MAAM,oBAAoB,GAAG,IAAA,YAAI,EAC/B,GAAG,EAAE,mDAAQ,oCAAoC,GAAC,CACnD,CAAA;AAED,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC7B,YAAY,EAAE,CAAC;KAChB;CACF,CAAC,CAAC,CAAA;AAcH,kBAAe,IAAA,qBAAQ,EAAC,SAAS,aAAa,CAAC,EAC7C,KAAK,~~EACL,cAAc,GAIf~~;IACC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,GAAqB,CAAA;IACzD,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,IAAA,gBAAQ,GAAa,CAAA;IACvD,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,IAAA,gBAAQ,GAAiB,CAAA;IACzE,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvE,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;~~IAC/B,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;~~IAE/B,SAAS,eAAe,CACtB,cAAqC,EACrC,kBAA4B;QAE5B,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,cAAc,EAAE,MAAM,CAAC,CAAA;QACnD,MAAM,MAAM,GAAG,OAAO,CAAC,wBAAwB,CAAC,cAAc,CAAC,CAAA;QAC/D,IAAI,MAAM,EAAE;YACV,MAAM,CAAC,qBAAqB,EAAE,oBAAoB,CAAC,GAAG,MAAM,CAAA;YAC5D,IAAI,MAAM,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE;gBAChD,YAAY,CAAC;oBACX,cAAc;oBACd,qBAAqB;oBACrB,oBAAoB;oBACpB,IAAI;iBACL,CAAC,CAAA;aACH;iBAAM;gBACL,qBAAqB,EAAE,CAAA;aACxB;SACF;QACD,IAAI,kBAAkB,EAAE;YACtB,mBAAmB,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,CAAC,CAAA;SAC9C;IACH,CAAC;IAED,~~MAAM,mBAAmB,GAAG;QAC1B;YACE,KAAK,EAAE,4BAA4B;YACnC,~~OAAO,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,IAAI,CAAC;SAC7C;KACF,CAAA;IAED,IAAI,IAAA,oCAA6B,EAAC,OAAO,CAAC,EAAE;QAC1C,mBAAmB,CAAC,OAAO,CAAC;YAC1B,KAAK,EAAE,mBAAmB;YAC1B,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,qBAAqB,EAAE,qBAAqB,CAAC,CAChE,CAAA;iBACF;YACH,CAAC;SACF,CAAC,CAAA;QAEF,mBAAmB,CAAC,IAAI,CAAC;YACvB,KAAK,EAAE,uBAAuB;YAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,IAAI,CAAC;SAC9C,CAAC,CAAA;KACH;IACD,OAAO,CACL;QACE,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,aAAa,CAAC;YAEhD,8BAAC,cAAQ,OAAG,CACD;QAEb,8BAAC,cAAW,IACV,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,OAAO,CAAC,MAAM,CAAC,EACrB,eAAe,EAAE,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE;gBAC/B,QAAQ,EAAE,CAAA;gBACV,SAAS,CAAC,SAAS,CAAC,CAAA;YACtB,CAAC,EACD,OAAO,EAAE,GAAG,EAAE,CAAC,SAAS,CAAC,SAAS,CAAC,EACnC,SAAS,EAAE;gBACT;~~oBACE~~,KAAK,EAAE,cAAc;~~oBACrB~~,OAAO,EAAE,GAAG,EAAE;~~wBACZ~~,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;~~4BACtC~~,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,gBAAgB,EAAE,gBAAgB,EAAE;~~gCACpD~~,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE;~~6BACpB~~,CAAC,CACH,CAAA;yBACF;oBACH,CAAC;~~iBACF;gBACD~~,GAAG,CAAC,OAAO,CAAC,~~cAAc~~,CAAC,CAAC,CAAC,~~mBAAmB~~,CAAC,CAAC,CAAC,EAAE,CAAC;~~gBAEtD~~,GAAG,CAAC,~~aAAa~~,~~CAAC~~,~~MAAM~~,~~GAAG~~,CAAC;~~oBAC1B~~,CAAC,CAAC;wBACE;4BACE,KAAK,EAAE,~~oBAAoB~~;~~4BAC3B~~,OAAO,EAAE,~~aAAa~~,CAAC,~~GAAG~~,CAAC,CAAC,~~IAAI~~,~~EAAE~~,~~GAAG~~,~~EAAE~~,~~EAAE~~,~~CAAC~~,CAAC;~~gCACzC~~,KAAK,EAAE,~~IAAI~~;~~gCACX~~,OAAO,EAAE,GAAG,EAAE,CAAC,~~cAAc~~,CAAC,~~GAAG~~,CAAC;~~6BACnC,CAAC,CAAC~~;~~yBACJ;~~qBACF;oBACH,CAAC,CAAC,EAAE,CAAC;aACR,GACD;QACF,8BAAC,gBAAQ,IAAC,QAAQ,EAAE,~~0CAAO~~;~~YACxB~~,SAAS,CAAC,CAAC,CAAC,CACX,8BAAC,kBAAkB,IACjB,SAAS,EAAE,SAAS,EACpB,~~YAAY~~,EAAE,YAAY,~~GAC1B~~,CACH,CAAC,CAAC,CAAC,IAAI;YACP,gBAAgB,CAAC,CAAC,CAAC,CAClB,8BAAC,mBAAmB,IAClB,WAAW,EAAE,GAAG,EAAE,CAAC,mBAAmB,CAAC,SAAS,CAAC,EACjD,mBAAmB,EAAE,gBAAgB,EACrC,OAAO,EAAE,OAAO,GAChB,CACH,CAAC,CAAC,CAAC,IAAI;YACP,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,oBAAoB,IACnB,WAAW,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,KAAK,CAAC,EAClD,eAAe,EAAE,eAAe,EAChC,OAAO,EAAE,OAAO,GAChB,CACH,CAAC,CAAC,CAAC,IAAI;YACP,oBAAoB,CAAC,CAAC,CAAC,CACtB,8BAAC,oBAAoB,IACnB,WAAW,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,KAAK,CAAC,EACjD,OAAO,EAAE,OAAO,EAChB,eAAe,EAAE,eAAe,GAChC,CACH,CAAC,CAAC,CAAC,IAAI,CACC,CACV,CACJ,CAAA;AACH,CAAC,CAAC,CAAA"}
1	+ {"version":3,"file":"HamburgerMenu.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuD;AACvD,4CAA0C;AAC1C,uCAA0C;AAC1C,2CAAqC;AACrC,iEAA+C;AAC/C,6CAM2B;AAC3B,+DAGoC;AAEpC,QAAQ;AACR,oEAA+C;AAK/C,kBAAkB;AAClB,MAAM,kBAAkB,GAAG,IAAA,YAAI,EAC7B,GAAG,EAAE,mDAAQ,kCAAkC,GAAC,CACjD,CAAA;AACD,MAAM,mBAAmB,GAAG,IAAA,YAAI,EAC9B,GAAG,EAAE,mDAAQ,mCAAmC,GAAC,CAClD,CAAA;AACD,MAAM,oBAAoB,GAAG,IAAA,YAAI,EAC/B,GAAG,EAAE,mDAAQ,oCAAoC,GAAC,CACnD,CAAA;AACD,MAAM,oBAAoB,GAAG,IAAA,YAAI,EAC/B,GAAG,EAAE,mDAAQ,oCAAoC,GAAC,CACnD,CAAA;AAED,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,QAAQ,EAAE;QACR,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC7B,YAAY,EAAE,CAAC;KAChB;CACF,CAAC,CAAC,CAAA;AAcH,kBAAe,IAAA,qBAAQ,EAAC,SAAS,aAAa,CAAC,EAC7C,KAAK,GAGN;IACC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,GAAqB,CAAA;IACzD,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,IAAA,gBAAQ,GAAa,CAAA;IACvD,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,IAAA,gBAAQ,GAAiB,CAAA;IACzE,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvE,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,SAAS,eAAe,CACtB,cAAqC,EACrC,kBAA4B;QAE5B,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,cAAc,EAAE,MAAM,CAAC,CAAA;QACnD,MAAM,MAAM,GAAG,OAAO,CAAC,wBAAwB,CAAC,cAAc,CAAC,CAAA;QAC/D,IAAI,MAAM,EAAE;YACV,MAAM,CAAC,qBAAqB,EAAE,oBAAoB,CAAC,GAAG,MAAM,CAAA;YAC5D,IAAI,MAAM,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE;gBAChD,YAAY,CAAC;oBACX,cAAc;oBACd,qBAAqB;oBACrB,oBAAoB;oBACpB,IAAI;iBACL,CAAC,CAAA;aACH;iBAAM;gBACL,qBAAqB,EAAE,CAAA;aACxB;SACF;QACD,IAAI,kBAAkB,EAAE;YACtB,mBAAmB,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,CAAC,CAAA;SAC9C;IACH,CAAC;IAED,OAAO,CACL;QACE,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,aAAa,CAAC;YAEhD,8BAAC,cAAQ,OAAG,CACD;QAEb,8BAAC,cAAW,IACV,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,OAAO,CAAC,MAAM,CAAC,EACrB,eAAe,EAAE,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE;gBAC/B,QAAQ,EAAE,CAAA;gBACV,SAAS,CAAC,SAAS,CAAC,CAAA;YACtB,CAAC,EACD,OAAO,EAAE,GAAG,EAAE,CAAC,SAAS,CAAC,SAAS,CAAC,EACnC,SAAS,EAAE;gBACT,GAAG,CAAC,IAAA,6BAAsB,EAAC,OAAO,CAAC;oBACjC,CAAC,CAAC;wBACE;4BACE,KAAK,EAAE,cAAc;4BACrB,OAAO,EAAE,GAAG,EAAE;gCACZ,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oCACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,gBAAgB,EAAE,gBAAgB,EAAE;wCACpD,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE;qCACpB,CAAC,CACH,CAAA;iCACF;4BACH,CAAC;yBACF;qBACF;oBACH,CAAC,CAAC,EAAE,CAAC;gBACP,GAAG,CAAC,IAAA,oCAA6B,EAAC,OAAO,CAAC;oBACxC,CAAC,CAAC;wBACE;4BACE,KAAK,EAAE,4BAA4B;4BACnC,OAAO,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,IAAI,CAAC;yBAC7C;qBACF;oBACH,CAAC,CAAC,EAAE,CAAC;gBACP,GAAG,CAAC,IAAA,0CAAmC,EAAC,OAAO,CAAC;oBAC9C,CAAC,CAAC;wBACE;4BACE,KAAK,EAAE,mBAAmB;4BAC1B,OAAO,EAAE,GAAG,EAAE;gCACZ,IAAI,IAAA,gCAAyB,EAAC,OAAO,CAAC,EAAE;oCACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CACf,qBAAqB,EACrB,qBAAqB,CACtB,CACF,CAAA;iCACF;4BACH,CAAC;yBACF;wBACD;4BACE,KAAK,EAAE,uBAAuB;4BAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,IAAI,CAAC;yBAC9C;qBACF;oBACH,CAAC,CAAC,EAAE,CAAC;aACR,GACD;QACF,8BAAC,gBAAQ,IAAC,QAAQ,EAAE,8BAAC,eAAK,CAAC,QAAQ,OAAG;YACnC,SAAS,CAAC,CAAC,CAAC,CACX,8BAAC,kBAAkB,IACjB,SAAS,EAAE,SAAS,EACpB,OAAO,EAAE,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,CAAC,GACtC,CACH,CAAC,CAAC,CAAC,IAAI;YACP,gBAAgB,CAAC,CAAC,CAAC,CAClB,8BAAC,mBAAmB,IAClB,WAAW,EAAE,GAAG,EAAE,CAAC,mBAAmB,CAAC,SAAS,CAAC,EACjD,mBAAmB,EAAE,gBAAgB,EACrC,OAAO,EAAE,OAAO,GAChB,CACH,CAAC,CAAC,CAAC,IAAI;YACP,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,oBAAoB,IACnB,WAAW,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,KAAK,CAAC,EAClD,eAAe,EAAE,eAAe,EAChC,OAAO,EAAE,OAAO,GAChB,CACH,CAAC,CAAC,CAAC,IAAI;YACP,oBAAoB,CAAC,CAAC,CAAC,CACtB,8BAAC,oBAAoB,IACnB,WAAW,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,KAAK,CAAC,EACjD,OAAO,EAAE,OAAO,EAChB,eAAe,EAAE,eAAe,GAChC,CACH,CAAC,CAAC,CAAC,IAAI,CACC,CACV,CACJ,CAAA;AACH,CAAC,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts CHANGED Viewed

@@ -1,8 +1,8 @@
+import React from 'react';
 import { HierarchicalTrackSelectorModel } from '../../model';
-declare function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyIdx, }: {
+declare function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, }: {
     model: HierarchicalTrackSelectorModel;
     setHeaderHeight: (n: number) => void;
-    setAssemblyIdx: (n: number) => void;
-}): JSX.Element;
+}): React.JSX.Element;
 declare const _default: typeof HierarchicalTrackSelectorHeader;
 export default _default;

package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js CHANGED Viewed

@@ -45,13 +45,13 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         marginBottom: 0,
     },
 }));
-function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyIdx, }) {
+function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, }) {
     const { classes } = useStyles();
     const [facetedOpen, setFacetedOpen] = (0, react_1.useState)(false);
     const { filterText } = model;
     return (react_1.default.createElement("div", { ref: ref => setHeaderHeight((ref === null || ref === void 0 ? void 0 : ref.getBoundingClientRect().height) || 0), "data-testid": "hierarchical_track_selector" },
         react_1.default.createElement("div", { style: { display: 'flex' } },
-            react_1.default.createElement(HamburgerMenu_1.default, { model: model, setAssemblyIdx: setAssemblyIdx }),
+            react_1.default.createElement(HamburgerMenu_1.default, { model: model }),
             react_1.default.createElement(ShoppingCart_1.default, { model: model }),
             react_1.default.createElement(material_1.TextField, { className: classes.searchBox, label: "Filter tracks", value: filterText, onChange: event => model.setFilterText(event.target.value), fullWidth: true, InputProps: {
                     endAdornment: (react_1.default.createElement(material_1.InputAdornment, { position: "end" },

package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts CHANGED Viewed

@@ -1,7 +1,8 @@
+import React from 'react';
 import { TreeNode, HierarchicalTrackSelectorModel } from '../../model';
 declare const _default: ({ height, tree, model, }: {
     height: number;
     tree: TreeNode;
     model: HierarchicalTrackSelectorModel;
-}) => JSX.Element;
+}) => React.JSX.Element;
 export default _default;

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts CHANGED Viewed

@@ -1,6 +1,7 @@
+import React from 'react';
 import { NodeData } from '../util';
 export default function Category({ isOpen, setOpen, data, }: {
     isOpen: boolean;
     setOpen: (arg: boolean) => void;
     data: NodeData;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts CHANGED Viewed

@@ -1,3 +1,4 @@
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { NodeData } from '../util';
 export interface InfoArgs {
@@ -7,4 +8,4 @@ export interface InfoArgs {
 }
 export default function TrackLabel({ data }: {
     data: NodeData;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts CHANGED Viewed

@@ -1,3 +1,4 @@
+import React from 'react';
 import { NodeData } from '../util';
 export default function Node({ data, isOpen, style, setOpen, }: {
     data: NodeData;
@@ -6,4 +7,4 @@ export default function Node({ data, isOpen, style, setOpen, }: {
         height: number;
     };
     setOpen: (arg: boolean) => void;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/HierarchicalTrackSelectorWidget/model.d.ts CHANGED Viewed

@@ -14,10 +14,25 @@ export type TreeNode = {
 export declare function generateHierarchy(model: HierarchicalTrackSelectorModel, trackConfigurations: AnyConfigurationModel[], collapsed: {
     get: (arg: string) => boolean | undefined;
 }, extra?: string): TreeNode[];
+/**
+ * #stateModel HierarchicalTrackSelectorWidget
+ */
 export default function stateTreeFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
+    /**
+     * #property
+     */
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    /**
+     * #property
+     */
     type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
+    /**
+     * #property
+     */
     collapsed: import("mobx-state-tree").IMapType<import("mobx-state-tree").ISimpleType<boolean>>;
+    /**
+     * #property
+     */
     view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
 }, {
     selection: ({
@@ -27,28 +42,74 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
     filterText: string;
 } & {
+    /**
+     * #action
+     */
     setSelection(elt: AnyConfigurationModel[]): void;
+    /**
+     * #action
+     */
     addToSelection(elt: AnyConfigurationModel[]): void;
+    /**
+     * #action
+     */
     removeFromSelection(elt: AnyConfigurationModel[]): void;
+    /**
+     * #action
+     */
     clearSelection(): void;
+    /**
+     * #action
+     */
     setView(view: unknown): void;
+    /**
+     * #action
+     */
     toggleCategory(pathName: string): void;
+    /**
+     * #action
+     */
     clearFilterText(): void;
+    /**
+     * #action
+     */
     setFilterText(newText: string): void;
 } & {
-    getRefSeqTrackConf(assemblyName: string): any;
+    /**
+     * #method
+     */
+    getRefSeqTrackConf(assemblyName: string): AnyConfigurationModel | undefined;
 } & {
-    trackConfigurations(assemblyName: string): any[];
+    /**
+     * #getter
+     */
     readonly assemblyNames: string[];
-    connectionTrackConfigurations(assemblyName: string, connection: {
+} & {
+    /**
+     * #method
+     * filter out tracks that don't match the current display types
+     */
+    connectionTrackConfigurations(connection: {
         tracks: AnyConfigurationModel[];
     }): ({
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
         setSubschema(slotName: string, data: unknown): any;
     } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
+    /**
+     * #getter
+     * filter out tracks that don't match the current assembly/display types
+     */
+    readonly trackConfigurations: ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
 } & {
-    hierarchy(assemblyName: string): {
+    /**
+     * #getter
+     */
+    readonly hierarchy: {
         name: string;
         id: string;
         children: ({
@@ -64,7 +125,10 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
             children: TreeNode[];
         })[];
     };
-    connectionHierarchy(assemblyName: string, connection: {
+    /**
+     * #method
+     */
+    connectionHierarchy(connection: {
         name: string;
         tracks: AnyConfigurationModel[];
     }): TreeNode[];