@jbrowse/plugin-data-management 2.4.1 → 2.5.0

package/esm/PluginStoreWidget/components/PluginStoreWidget.js

@@ -91,14 +91,11 @@ function PluginStoreWidget({ model }) {
                 React.createElement(Typography, { variant: "h5" }, "Available plugins")),
             error ? (React.createElement(Typography, { color: "error" }, `${error}`)) : pluginArray ? (pluginArray
                 .filter(plugin => {
-                // If pugin only has cjsUrl, don't display outside desktop
-                if (!isElectron &&
-                    !(plugin.esmUrl || plugin.url || plugin.umdUrl)) {
-                    return false;
-                }
-                return plugin.name
-                    .toLowerCase()
-                    .includes(model.filterText.toLowerCase());
+                // If plugin only has cjsUrl, don't display outside desktop
+                return (!(isElectron && plugin.cjsUrl) &&
+                    plugin.name
+                        .toLowerCase()
+                        .includes(model.filterText.toLowerCase()));
             })
                 .map(plugin => (React.createElement(PluginCard, { key: plugin.name, plugin: plugin, model: model, adminMode: !!adminMode })))) : (React.createElement(LoadingEllipses, null)))));
 }

package/esm/PluginStoreWidget/components/PluginStoreWidget.js.map

@@ -1 +1 @@
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+{"version":3,"file":"PluginStoreWidget.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/PluginStoreWidget.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AAElD,OAAO,EACL,SAAS,EACT,gBAAgB,EAChB,MAAM,EACN,UAAU,EACV,cAAc,EACd,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,MAAM,EAAE,MAAM,iBAAiB,CAAA;AAExC,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAClD,OAAO,EAAE,UAAU,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAE3D,QAAQ;AACR,OAAO,cAAc,MAAM,gCAAgC,CAAA;AAC3D,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,gBAAgB,MAAM,kCAAkC,CAAA;AAE/D,SAAS;AACT,OAAO,oBAAoB,MAAM,wBAAwB,CAAA;AACzD,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AAGjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,UAAU,EAAE;QACV,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,QAAQ,CAAC,YAAY;KAC3C;IACD,UAAU,EAAE;QACV,MAAM,EAAE,OAAO;QACf,YAAY,EAAE,CAAC;QACf,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,IAAI;QAC9C,OAAO,EAAE,KAAK;QACd,OAAO,EAAE,MAAM;QACf,YAAY,EAAE,QAAQ;KACvB;IACD,kBAAkB,EAAE;QAClB,MAAM,EAAE,OAAO;QACf,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,iBAAiB,CAAC,EAAE,KAAK,EAA+B;IAC/D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,EAAmB,CAAA;IACjE,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,EAAW,CAAA;IAC7C,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvE,MAAM,EAAE,SAAS,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IAEvC,SAAS,CAAC,GAAG,EAAE;QACb,MAAM,UAAU,GAAG,IAAI,eAAe,EAAE,CAAA;QACxC,MAAM,EAAE,MAAM,EAAE,GAAG,UAAU,CAG5B;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI;gBACF,MAAM,QAAQ,GAAG,MAAM,KAAK,CAC1B,+CAA+C,EAC/C,EAAE,MAAM,EAAE,CACX,CAAA;gBACD,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE;oBAChB,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAA;oBACjC,MAAM,IAAI,KAAK,CACb,gCAAgC,QAAQ,CAAC,MAAM,IAAI,QAAQ,CAAC,UAAU,IAAI,GAAG,EAAE,CAChF,CAAA;iBACF;gBACD,MAAM,KAAK,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAA;gBACnC,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE;oBACnB,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;iBAC9B;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,QAAQ,CAAC,CAAC,CAAC,CAAA;aACZ;QACH,CAAC,CAAC,EAAE,CAAA;QAEJ,OAAO,GAAG,EAAE;YACV,UAAU,CAAC,KAAK,EAAE,CAAA;QACpB,CAAC,CAAA;IACH,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QACzB,SAAS,IAAI,CACZ;YACG,CAAC,UAAU,IAAI,CACd,6BAAK,SAAS,EAAE,OAAO,CAAC,UAAU;gBAChC,oBAAC,gBAAgB,IAAC,KAAK,EAAE,EAAE,WAAW,EAAE,OAAO,EAAE,GAAI;gBACrD,oBAAC,UAAU;;oBACS,iDAAyB;kKAGhC,CACT,CACP;YACD,6BAAK,SAAS,EAAE,OAAO,CAAC,kBAAkB;gBACxC,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,IAAI,CAAC,wBAGrC,CACL;YACN,oBAAC,gBAAgB,IACf,IAAI,EAAE,oBAAoB,EAC1B,OAAO,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,KAAK,CAAC,EAC7C,KAAK,EAAE,KAAK,GACZ,CACD,CACJ;QACD,oBAAC,SAAS,IACR,KAAK,EAAC,gBAAgB,EACtB,KAAK,EAAE,KAAK,CAAC,UAAU,EACvB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC1D,SAAS,QACT,UAAU,EAAE;gBACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;oBAC5B,oBAAC,UAAU,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,eAAe,EAAE;wBAChD,oBAAC,SAAS,OAAG,CACF,CACE,CAClB;aACF,GACD;QACF,oBAAC,SAAS,IAAC,eAAe;YACxB,oBAAC,gBAAgB,IACf,UAAU,EAAE,oBAAC,cAAc,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU,GAAI;gBAE7D,oBAAC,UAAU,IAAC,OAAO,EAAC,IAAI,wBAA+B,CACtC;YACnB,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE;gBAC3B,oBAAC,oBAAoB,IAAC,aAAa,EAAE,aAAa,EAAE,KAAK,EAAE,KAAK,GAAI,CAChE,CACI;QACZ,oBAAC,SAAS,IAAC,eAAe;YACxB,oBAAC,gBAAgB,IACf,UAAU,EAAE,oBAAC,cAAc,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU,GAAI;gBAE7D,oBAAC,UAAU,IAAC,OAAO,EAAC,IAAI,wBAA+B,CACtC;YAClB,KAAK,CAAC,CAAC,CAAC,CACP,oBAAC,UAAU,IAAC,KAAK,EAAC,OAAO,IAAE,GAAG,KAAK,EAAE,CAAc,CACpD,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,CAChB,WAAW;iBACR,MAAM,CAAC,MAAM,CAAC,EAAE;gBACf,2DAA2D;gBAC3D,OAAO,CACL,CAAC,CAAC,UAAU,IAAI,MAAM,CAAC,MAAM,CAAC;oBAC9B,MAAM,CAAC,IAAI;yBACR,WAAW,EAAE;yBACb,QAAQ,CAAC,KAAK,CAAC,UAAU,CAAC,WAAW,EAAE,CAAC,CAC5C,CAAA;YACH,CAAC,CAAC;iBACD,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACb,oBAAC,UAAU,IACT,GAAG,EAAE,MAAM,CAAC,IAAI,EAChB,MAAM,EAAE,MAAM,EACd,KAAK,EAAE,KAAK,EACZ,SAAS,EAAE,CAAC,CAAC,SAAS,GACtB,CACH,CAAC,CACL,CAAC,CAAC,CAAC,CACF,oBAAC,eAAe,OAAG,CACpB,CACS,CACR,CACP,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,iBAAiB,CAAC,CAAA"}

package/esm/SetDefaultSession/SetDefaultSession.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare const SetDefaultSession: ({ rootModel, onClose }: {
     rootModel?: unknown;
     onClose: () => void;

package/esm/ucsc-trackhub/configSchema.d.ts

@@ -1,2 +1,33 @@
-declare const UCSCTrackHubConnection: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const UCSCTrackHubConnection: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    hubTxtLocation: {
+        type: string;
+        defaultValue: {
+            uri: string;
+            locationType: string;
+        };
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    assemblyNames: {
+        type: string;
+        defaultValue: never[];
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    name: {
+        type: string;
+        defaultValue: string;
+        description: string;
+    };
+    assemblyNames: {
+        type: string;
+        defaultValue: never[];
+        description: string;
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>, undefined>>;
 export default UCSCTrackHubConnection;

package/esm/ucsc-trackhub/model.d.ts

@@ -3,7 +3,32 @@ export default function UCSCTrackHubConnection(pluginManager: PluginManager): im
     name: import("mobx-state-tree").ISimpleType<string>;
     tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
 } & {
-    configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
+    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        hubTxtLocation: {
+            type: string;
+            defaultValue: {
+                uri: string;
+                locationType: string;
+            };
+            description: string;
+        };
+        assemblyNames: {
+            type: string;
+            defaultValue: never[];
+            description: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+        name: {
+            type: string;
+            defaultValue: string;
+            description: string;
+        };
+        assemblyNames: {
+            type: string;
+            defaultValue: never[];
+            description: string;
+        };
+    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "connectionId">>, undefined>>;
     type: import("mobx-state-tree").ISimpleType<"UCSCTrackHubConnection">;
 }, {
     afterAttach(): void;

package/esm/ucsc-trackhub/model.js

@@ -13,9 +13,10 @@ export default function UCSCTrackHubConnection(pluginManager) {
     }))
         .actions(self => ({
         async connect() {
+            var _a;
             const session = getSession(self);
             try {
-                const connectionName = getConf(self, 'name');
+                const connectionName = getConf(self, 'name'); // NOTE: name comes from the base configuration
                 const hubFileLocation = getConf(self, 'hubTxtLocation');
                 const hubFile = await fetchHubFile(hubFileLocation);
                 const genomeFile = hubFile.get('genomesFile');
@@ -40,7 +41,7 @@ export default function UCSCTrackHubConnection(pluginManager) {
                         !assemblyNames.includes(genomeName)) {
                         continue;
                     }
-                    const conf = session.assemblies.find(a => readConfObject(a, 'name') === genomeName);
+                    const conf = (_a = session.assemblyManager.get(genomeName)) === null || _a === void 0 ? void 0 : _a.configuration;
                     if (!conf) {
                         throw new Error(`Cannot find assembly for "${genomeName}" from the genomes file for connection "${connectionName}"`);
                     }

package/esm/ucsc-trackhub/model.js.map

@@ -1 +1 @@
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+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/ucsc-trackhub/model.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,0BAA0B,EAAE,MAAM,4CAA4C,CAAA;AACvF,OAAO,EACL,sBAAsB,EACtB,cAAc,EACd,OAAO,GACR,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AAEvC,SAAS;AACT,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,EACL,gBAAgB,EAChB,YAAY,EACZ,gBAAgB,EAChB,cAAc,GACf,MAAM,gBAAgB,CAAA;AAEvB,MAAM,CAAC,OAAO,UAAU,sBAAsB,CAAC,aAA4B;IACzE,OAAO,KAAK;SACT,OAAO,CACN,wBAAwB,EACxB,0BAA0B,CAAC,aAAa,CAAC,EACzC,KAAK,CAAC,KAAK,CAAC;QACV,aAAa,EAAE,sBAAsB,CAAC,YAAY,CAAC;QACnD,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,wBAAwB,CAAC;KAC9C,CAAC,CACH;SACA,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,KAAK,CAAC,OAAO;;YACX,MAAM,OAAO,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAChC,IAAI;gBACF,MAAM,cAAc,GAAG,OAAO,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA,CAAC,+CAA+C;gBAC5F,MAAM,eAAe,GAAG,OAAO,CAAC,IAAI,EAAE,gBAAgB,CAAC,CAAA;gBACvD,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC,eAAe,CAAC,CAAA;gBACnD,MAAM,UAAU,GAAG,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,CAAA;gBAC7C,IAAI,CAAC,UAAU,EAAE;oBACf,MAAM,IAAI,KAAK,CAAC,8BAA8B,CAAC,CAAA;iBAChD;gBAED,MAAM,MAAM,GAAG,IAAI,GAAG,CAAC,eAAe,CAAC,GAAG,EAAE,eAAe,CAAC,OAAO,CAAC,CAAA;gBACpE,MAAM,mBAAmB,GAAG,MAAM;oBAChC,CAAC,CAAC;wBACE,GAAG,EAAE,IAAI,GAAG,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC,IAAI;wBACrC,YAAY,EAAE,aAAsB;qBACrC;oBACH,CAAC,CAAC;wBACE,SAAS,EAAE,UAAU;wBACrB,YAAY,EAAE,mBAA4B;qBAC3C,CAAA;gBACL,MAAM,WAAW,GAAG,MAAM,gBAAgB,CAAC,mBAAmB,CAAC,CAAA;gBAC/D,MAAM,WAAW,GAAG,EAAE,CAAA;gBACtB,KAAK,MAAM,CAAC,UAAU,EAAE,MAAM,CAAC,IAAI,WAAW,EAAE;oBAC9C,MAAM,aAAa,GAAG,OAAO,CAAC,IAAI,EAAE,eAAe,CAAC,CAAA;oBACpD,IACE,aAAa,CAAC,MAAM,GAAG,CAAC;wBACxB,CAAC,aAAa,CAAC,QAAQ,CAAC,UAAU,CAAC,EACnC;wBACA,SAAQ;qBACT;oBAED,MAAM,IAAI,GAAG,MAAA,OAAO,CAAC,eAAe,CAAC,GAAG,CAAC,UAAU,CAAC,0CAAE,aAAa,CAAA;oBACnE,IAAI,CAAC,IAAI,EAAE;wBACT,MAAM,IAAI,KAAK,CACb,6BAA6B,UAAU,2CAA2C,cAAc,GAAG,CACpG,CAAA;qBACF;oBACD,MAAM,EAAE,GAAG,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAA;oBAChC,IAAI,CAAC,EAAE,EAAE;wBACP,MAAM,IAAI,KAAK,CAAC,8BAA8B,CAAC,CAAA;qBAChD;oBACD,MAAM,IAAI,GAAG,IAAI,GAAG,CAAC,UAAU,EAAE,MAAM,CAAC,CAAA;oBACxC,MAAM,UAAU,GAAG,MAAM;wBACvB,CAAC,CAAC;4BACE,GAAG,EAAE,IAAI,GAAG,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC,IAAI;4BAC3B,YAAY,EAAE,aAAsB;yBACrC;wBACH,CAAC,CAAC;4BACE,SAAS,EAAE,EAAE;4BACb,YAAY,EAAE,mBAA4B;yBAC3C,CAAA;oBACL,MAAM,OAAO,GAAG,MAAM,gBAAgB,CAAC,UAAU,CAAC,CAAA;oBAClD,WAAW,CAAC,IAAI,CAAC,CAAC,UAAU,EAAE,OAAO,EAAE,UAAU,EAAE,IAAI,CAAU,CAAC,CAAA;iBACnE;gBACD,KAAK,MAAM,CACT,UAAU,EACV,WAAW,EACX,UAAU,EACV,IAAI,EACL,IAAI,WAAW,EAAE;oBAChB,MAAM,UAAU,GAAG,cAAc,CAAC,IAAI,EAAE,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC,CAAA;oBAChE,IAAI,CAAC,aAAa,CAChB,cAAc,CAAC,WAAW,EAAE,UAAU,EAAE,UAAU,EAAE,UAAU,CAAC,CAChE,CAAA;iBACF;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,OAAO,CAAC,MAAM,CACZ,yDAAyD,IAAI,CAAC,aAAa,CAAC,IAAI,6FAA6F,CAAC,GAAG,EACjL,OAAO,CACR,CAAA;gBACD,OAAO,CAAC,eAAe,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;aAC5C;QACH,CAAC;KACF,CAAC,CAAC,CAAA;AACP,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-data-management",
-  "version": "2.4.1",
+  "version": "2.5.0",
   "description": "JBrowse 2 linear genome view",
   "keywords": [
     "jbrowse",
@@ -39,7 +39,7 @@
   "dependencies": {
     "@gmod/ucsc-hub": "^0.1.6",
     "@mui/icons-material": "^5.0.1",
-    "@mui/x-data-grid": "^5.0.1",
+    "@mui/x-data-grid": "^6.0.1",
     "clsx": "^1.1.0",
     "react-virtualized-auto-sizer": "^1.0.2",
     "react-vtree": "^3.0.0-beta.1",
@@ -61,5 +61,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "747c50c4edc0184827efa4f8dfc576ca9a72caeb"
+  "gitHead": "d1ca073996d008f0fe9a52f7c1a47ae649dcfdaf"
 }

package/src/AddConnectionWidget/components/AddConnectionWidget.test.tsx

@@ -7,8 +7,6 @@ import AddConnectionWidget from './AddConnectionWidget'
 
 jest.mock('@jbrowse/web/src/makeWorkerInstance', () => () => {})
 
-// window.fetch = jest.fn(() => new Promise(resolve => resolve()))
-
 describe('<AddConnectionWidget />', () => {
   // eslint-disable-next-line @typescript-eslint/no-explicit-any
   let model: any

package/src/AddConnectionWidget/components/AddConnectionWidget.tsx

@@ -1,21 +1,14 @@
 import React, { useState } from 'react'
+import { Button, Step, StepContent, StepLabel, Stepper } from '@mui/material'
 import { getSession, getEnv } from '@jbrowse/core/util'
-import {
-  Button,
-  Step,
-  StepContent,
-  StepLabel,
-  Stepper,
-  Typography,
-} from '@mui/material'
 import { makeStyles } from 'tss-react/mui'
 import { observer } from 'mobx-react'
+import { AnyConfigurationModel } from '@jbrowse/core/configuration'
 import { ConnectionType } from '@jbrowse/core/pluggableElementTypes'
 
 // locals
 import ConfigureConnection from './ConfigureConnection'
 import ConnectionTypeSelect from './ConnectionTypeSelect'
-import { AnyConfigurationModel } from '@jbrowse/core/configuration'
 
 const useStyles = makeStyles()(theme => ({
   root: {
@@ -35,82 +28,18 @@ const useStyles = makeStyles()(theme => ({
 
 const steps = ['Select a Connection Type', 'Configure Connection']
 
-function AddConnectionWidget({ model }: { model: unknown }) {
+export default observer(function AddConnectionWidget({
+  model,
+}: {
+  model: unknown
+}) {
   const [connectionType, setConnectionType] = useState<ConnectionType>()
   const [configModel, setConfigModel] = useState<AnyConfigurationModel>()
   const [activeStep, setActiveStep] = useState(0)
   const { classes } = useStyles()
-
   const session = getSession(model)
-
   const { pluginManager } = getEnv(session)
 
-  function stepContent() {
-    switch (activeStep) {
-      case 0:
-        return (
-          <ConnectionTypeSelect
-            connectionTypeChoices={
-              pluginManager.getElementTypesInGroup(
-                'connection',
-              ) as ConnectionType[]
-            }
-            connectionType={connectionType}
-            setConnectionType={c => {
-              setConnectionType(c)
-              if (c) {
-                setConfigModel(
-                  c.configSchema.create(
-                    {
-                      connectionId: `${c.name}-${Date.now()}`,
-                    },
-                    getEnv(model),
-                  ),
-                )
-              }
-            }}
-          />
-        )
-      case 1:
-        return connectionType && configModel ? (
-          <ConfigureConnection
-            connectionType={connectionType}
-            model={configModel}
-            session={session}
-          />
-        ) : null
-
-      default:
-        return <Typography>Unknown step</Typography>
-    }
-  }
-
-  function handleNext() {
-    if (activeStep === steps.length - 1) {
-      handleFinish()
-    } else {
-      setActiveStep(activeStep + 1)
-    }
-  }
-
-  function handleBack() {
-    setActiveStep(activeStep - 1)
-  }
-
-  function handleFinish() {
-    const connectionConf = session.addConnectionConf(configModel)
-    if (session.makeConnection) {
-      session.makeConnection(connectionConf)
-    }
-    session.hideWidget(model)
-  }
-
-  function checkNextEnabled() {
-    return (
-      (activeStep === 0 && connectionType) || (activeStep === 1 && configModel)
-    )
-  }
-
   return (
     <div className={classes.root}>
       <Stepper
@@ -122,20 +51,54 @@ function AddConnectionWidget({ model }: { model: unknown }) {
           <Step key={label}>
             <StepLabel>{label}</StepLabel>
             <StepContent>
-              {stepContent()}
+              {activeStep === 0 ? (
+                <ConnectionTypeSelect
+                  connectionTypeChoices={pluginManager.getConnectionElements()}
+                  connectionType={connectionType}
+                  setConnectionType={c => {
+                    setConnectionType(c)
+                    if (!c) {
+                      return
+                    }
+                    const connectionId = `${c.name}-${Date.now()}`
+                    setConfigModel(
+                      c.configSchema.create({ connectionId }, getEnv(model)),
+                    )
+                  }}
+                />
+              ) : connectionType && configModel ? (
+                <ConfigureConnection
+                  connectionType={connectionType}
+                  model={configModel}
+                  session={session}
+                />
+              ) : null}
               <div className={classes.actionsContainer}>
                 <Button
                   disabled={activeStep === 0}
-                  onClick={handleBack}
+                  onClick={() => setActiveStep(activeStep - 1)}
                   className={classes.button}
                 >
                   Back
                 </Button>
                 <Button
-                  disabled={!checkNextEnabled()}
+                  disabled={
+                    !(
+                      (activeStep === 0 && connectionType) ||
+                      (activeStep === 1 && configModel)
+                    )
+                  }
                   variant="contained"
                   color="primary"
-                  onClick={handleNext}
+                  onClick={() => {
+                    if (activeStep === steps.length - 1) {
+                      const conf = session.addConnectionConf(configModel)
+                      session.makeConnection?.(conf)
+                      session.hideWidget(model)
+                    } else {
+                      setActiveStep(activeStep + 1)
+                    }
+                  }}
                   className={classes.button}
                   data-testid="addConnectionNext"
                 >
@@ -148,6 +111,4 @@ function AddConnectionWidget({ model }: { model: unknown }) {
       </Stepper>
     </div>
   )
-}
-
-export default observer(AddConnectionWidget)
+})

package/src/AddConnectionWidget/components/ConfigureConnection.tsx

@@ -6,22 +6,21 @@ import { AnyConfigurationModel } from '@jbrowse/core/configuration'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 import { LoadingEllipses } from '@jbrowse/core/ui'
 
-const ConfigureConnection = observer(
-  (props: {
-    connectionType: ConnectionType
-    model: AnyConfigurationModel
-    session: AbstractSessionModel
-  }) => {
-    const { connectionType, model, session } = props
-    const ConfigEditorComponent =
-      connectionType.configEditorComponent || ConfigurationEditor
+export default observer(function ({
+  connectionType,
+  model,
+  session,
+}: {
+  connectionType: ConnectionType
+  model: AnyConfigurationModel
+  session: AbstractSessionModel
+}) {
+  const ConfigEditorComponent =
+    connectionType.configEditorComponent || ConfigurationEditor
 
-    return (
-      <Suspense fallback={<LoadingEllipses />}>
-        <ConfigEditorComponent model={{ target: model }} session={session} />
-      </Suspense>
-    )
-  },
-)
-
-export default ConfigureConnection
+  return (
+    <Suspense fallback={<LoadingEllipses />}>
+      <ConfigEditorComponent model={{ target: model }} session={session} />
+    </Suspense>
+  )
+})

package/src/AddConnectionWidget/components/ConnectionTypeSelect.tsx

@@ -1,17 +1,20 @@
 import React, { useEffect } from 'react'
 import { IconButton, MenuItem, TextField } from '@mui/material'
 import { ConnectionType } from '@jbrowse/core/pluggableElementTypes'
+import { observer } from 'mobx-react'
 
 // icons
 import OpenInNewIcon from '@mui/icons-material/OpenInNew'
 
-function ConnectionTypeSelect(props: {
+export default observer(function ConnectionTypeSelect({
+  connectionTypeChoices,
+  connectionType,
+  setConnectionType,
+}: {
   connectionTypeChoices: ConnectionType[]
   connectionType?: ConnectionType
   setConnectionType: (c?: ConnectionType) => void
 }) {
-  const { connectionTypeChoices, connectionType, setConnectionType } = props
-
   useEffect(() => {
     if (!connectionType) {
       setConnectionType(connectionTypeChoices[0])
@@ -58,6 +61,4 @@ function ConnectionTypeSelect(props: {
       ) : null}
     </form>
   )
-}
-
-export default ConnectionTypeSelect
+})

package/src/AddConnectionWidget/components/__snapshots__/AddConnectionWidget.test.tsx.snap

@@ -92,6 +92,7 @@ exports[`<AddConnectionWidget /> renders 1`] = `
                     </div>
                     <input
                       aria-hidden="true"
+                      aria-invalid="false"
                       class="MuiSelect-nativeInput css-yf8vq0-MuiSelect-nativeInput"
                       tabindex="-1"
                       value="UCSCTrackHubConnection"

package/src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx

@@ -87,7 +87,7 @@ function AddTrackWorkflow({ model }: { model: AddTrackModel }) {
 
     const assemblyInstance = session.assemblyManager.get(assembly)
 
-    if (trackAdapter && trackAdapter.type !== 'UNKNOWN') {
+    if (assemblyInstance && trackAdapter && trackAdapter.type !== 'UNKNOWN') {
       session.addTrackConf({
         trackId,
         type: trackType,

package/src/AddTrackWidget/components/TextIndexingConfig.tsx

@@ -32,7 +32,11 @@ const useStyles = makeStyles()(theme => ({
   },
 }))
 
-const TextIndexingConfig = observer(({ model }: { model: AddTrackModel }) => {
+const TextIndexingConfig = observer(function ({
+  model,
+}: {
+  model: AddTrackModel
+}) {
   const { classes } = useStyles()
   const [value1, setValue1] = useState('')
   const [value2, setValue2] = useState('')
@@ -69,9 +73,9 @@ const TextIndexingConfig = observer(({ model }: { model: AddTrackModel }) => {
                         <InputAdornment position="end">
                           <IconButton
                             onClick={() => {
-                              const newAttr = section.values.filter((a, i) => {
-                                return i !== idx
-                              })
+                              const newAttr = section.values.filter(
+                                (_, i) => i !== idx,
+                              )
                               index === 0
                                 ? setAttributes(newAttr)
                                 : setExclude(newAttr)
@@ -100,14 +104,10 @@ const TextIndexingConfig = observer(({ model }: { model: AddTrackModel }) => {
                         <IconButton
                           onClick={() => {
                             if (index === 0) {
-                              const newAttr: string[] = attributes
-                              newAttr.push(value1)
-                              setAttributes(newAttr)
+                              setAttributes([...attributes, value1])
                               setValue1('')
                             } else {
-                              const newFeat: string[] = exclude
-                              newFeat.push(value2)
-                              setExclude(newFeat)
+                              setExclude([...exclude, value2])
                               setValue2('')
                             }
                           }}

package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.tsx

@@ -24,7 +24,7 @@ const AutoSizedHierarchicalTree = ({
       {({ height }) => {
         return (
           <HierarchicalTree
-            height={height - offset}
+            height={(height || offset) - offset}
             model={model}
             tree={tree}
           />

package/src/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.tsx

@@ -8,7 +8,7 @@ import {
   Button,
 } from '@mui/material'
 import { observer } from 'mobx-react'
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema'
+import { AnyConfigurationModel } from '@jbrowse/core/configuration'
 import { AbstractSessionModel } from '@jbrowse/core/util'
 
 function DeleteConnectionDialog({

package/src/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.tsx

@@ -14,6 +14,8 @@ export default function FacetedHeader({
   setFilterText,
   setUseShoppingCart,
   setHideSparse,
+  setShowOptions,
+  showOptions,
   hideSparse,
   useShoppingCart,
   filterText,
@@ -22,7 +24,9 @@ export default function FacetedHeader({
   setFilterText: (arg: string) => void
   setUseShoppingCart: (arg: boolean) => void
   setHideSparse: (arg: boolean) => void
+  setShowOptions: (arg: boolean) => void
   filterText: string
+  showOptions: boolean
   useShoppingCart: boolean
   hideSparse: boolean
   model: HierarchicalTrackSelectorModel
@@ -79,6 +83,12 @@ export default function FacetedHeader({
             checked: hideSparse,
             type: 'checkbox',
           },
+          {
+            label: 'Show extra table options',
+            onClick: () => setShowOptions(!showOptions),
+            checked: showOptions,
+            type: 'checkbox',
+          },
         ]}
       />
     </>

package/src/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.tsx

@@ -3,11 +3,12 @@ import { IconButton } from '@mui/material'
 import { transaction } from 'mobx'
 import { observer } from 'mobx-react'
 import { getRoot, resolveIdentifier } from 'mobx-state-tree'
-import { DataGrid, GridCellParams } from '@mui/x-data-grid'
+import { DataGrid, GridCellParams, GridToolbar } from '@mui/x-data-grid'
 
 // jbrowse
 import { getTrackName } from '@jbrowse/core/util/tracks'
-import { ResizeHandle, SanitizedHTML } from '@jbrowse/core/ui'
+import { ResizeHandle } from '@jbrowse/core/ui'
+import SanitizedHTML from '@jbrowse/core/ui/SanitizedHTML'
 import JBrowseMenu from '@jbrowse/core/ui/Menu'
 import ResizeBar, { useResizeBar } from '@jbrowse/core/ui/ResizeBar'
 import {
@@ -50,6 +51,7 @@ export default observer(function FacetedSelector({
   const { ref, scrollLeft } = useResizeBar()
 
   const [filterText, setFilterText] = useState('')
+  const [showOptions, setShowOptions] = useState(false)
   const [info, setInfo] = useState<InfoArgs>()
   const [useShoppingCart, setUseShoppingCart] = useState(false)
   const [hideSparse, setHideSparse] = useState(true)
@@ -185,7 +187,7 @@ export default observer(function FacetedSelector({
         const { value, id, row } = params
         return (
           <>
-            <SanitizedHTML html={value} />
+            <SanitizedHTML html={value as string} />
             <IconButton
               onClick={e =>
                 setInfo({
@@ -207,7 +209,7 @@ export default observer(function FacetedSelector({
       width: widthsDebounced[e] || 100, // can be undefined before useEffect update
       renderCell: (params: GridCellParams) => {
         const { value } = params
-        return value ? <SanitizedHTML html={value} /> : ''
+        return value ? <SanitizedHTML html={value as string} /> : ''
       },
     })),
     ...filteredMetadataKeys.map(e => ({
@@ -215,7 +217,7 @@ export default observer(function FacetedSelector({
       width: widthsDebounced[e] || 100, // can be undefined before useEffect update
       renderCell: (params: GridCellParams) => {
         const { value } = params
-        return value ? <SanitizedHTML html={value} /> : ''
+        return value ? <SanitizedHTML html={value as string} /> : ''
       },
     })),
   ]
@@ -242,9 +244,11 @@ export default observer(function FacetedSelector({
       ) : null}
       <FacetedHeader
         setHideSparse={setHideSparse}
+        setShowOptions={setShowOptions}
         setFilterText={setFilterText}
         setUseShoppingCart={setUseShoppingCart}
         hideSparse={hideSparse}
+        showOptions={showOptions}
         filterText={filterText}
         useShoppingCart={useShoppingCart}
         model={model}
@@ -286,11 +290,11 @@ export default observer(function FacetedSelector({
             )}
             columnVisibilityModel={visible}
             onColumnVisibilityModelChange={newModel => setVisible(newModel)}
-            headerHeight={35}
+            columnHeaderHeight={35}
             checkboxSelection
-            disableSelectionOnClick
+            disableRowSelectionOnClick
             keepNonExistentRowsSelected
-            onSelectionModelChange={userSelectedIds => {
+            onRowSelectionModelChange={userSelectedIds => {
               if (!useShoppingCart) {
                 const a1 = shownTrackIds
                 const a2 = userSelectedIds as string[]
@@ -309,9 +313,13 @@ export default observer(function FacetedSelector({
                 model.setSelection(tracks)
               }
             }}
-            selectionModel={
+            rowSelectionModel={
               useShoppingCart ? selection.map(s => s.trackId) : shownTrackIds
             }
+            slots={{ toolbar: showOptions ? GridToolbar : null }}
+            slotProps={{
+              toolbar: { printOptions: { disableToolbarButton: true } },
+            }}
             columns={columns}
             rowHeight={25}
           />