npm - @jbrowse/plugin-data-management - Versions diffs - 2.4.1 → 2.5.0 - Mend

@jbrowse/plugin-data-management 2.4.1 → 2.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (141) hide show

package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare function AddTrackWorkflow({ model }: {
     model: AddTrackModel;

package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js CHANGED Viewed

@@ -55,7 +55,7 @@ function AddTrackWorkflow({ model }) {
             `${session.adminMode ? '' : '-sessionTrack'}`,
         ].join('');
         const assemblyInstance = session.assemblyManager.get(assembly);
-        if (trackAdapter && trackAdapter.type !== 'UNKNOWN') {
+        if (assemblyInstance && trackAdapter && trackAdapter.type !== 'UNKNOWN') {
             session.addTrackConf({
                 trackId,
                 type: trackType,

package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"DefaultAddTrackWorkflow.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EACL,KAAK,EACL,MAAM,EACN,IAAI,EACJ,WAAW,EACX,SAAS,EACT,OAAO,EACP,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAEzC,OAAO,EACL,UAAU,EACV,UAAU,EACV,yBAAyB,GAC1B,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,SAAS;AACT,OAAO,YAAY,MAAM,gBAAgB,CAAA;AACzC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AAGnD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;IACD,OAAO,EAAE;QACP,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;KAClD;IACD,MAAM,EAAE;QACN,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC9B;IACD,gBAAgB,EAAE;QAChB,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC;QAC5B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;IACD,cAAc,EAAE;QACd,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,UAAU,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,QAAQ;KAC/D;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,KAAK,GAAG,CAAC,kBAAkB,EAAE,oBAAoB,CAAC,CAAA;AAExD,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAA;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,8DAA8D;IAC9D,MAAM,EAAE,WAAW,EAAE,GAAG,OAAO,CAAM,KAAK,CAAC,CAAA;IAC3C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EACJ,QAAQ,EACR,YAAY,EACZ,SAAS,EACT,SAAS,EACT,SAAS,EACT,cAAc,EACd,gBAAgB,GACjB,GAAG,KAAK,CAAA;IACT,MAAM,CAAC,iBAAiB,EAAE,oBAAoB,CAAC,GAAG,QAAQ,EAAU,CAAA;IAEpE,SAAS,cAAc,CAAC,IAAY;QAClC,QAAQ,IAAI,EAAE;YACZ,KAAK,CAAC;gBACJ,OAAO,oBAAC,iBAAiB,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;YAC5C,KAAK,CAAC;gBACJ,OAAO,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;YACvC;gBACE,OAAO,oBAAC,UAAU,uBAA0B,CAAA;SAC/C;IACH,CAAC;IAED,KAAK,UAAU,UAAU;QACvB,IAAI,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE;YACnC,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;YAC7B,OAAM;SACP;QAED,MAAM,OAAO,GAAG;YACd,GAAG,SAAS,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE;YAC7D,GAAG,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,eAAe,EAAE;SAC9C,CAAC,IAAI,CAAC,EAAE,CAAC,CAAA;QAEV,MAAM,gBAAgB,GAAG,OAAO,CAAC,eAAe,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAA;QAE9D,IAAI,gBAAgB,IAAI,YAAY,IAAI,YAAY,CAAC,IAAI,KAAK,SAAS,EAAE;YACvE,OAAO,CAAC,YAAY,CAAC;gBACnB,OAAO;gBACP,IAAI,EAAE,SAAS;gBACf,IAAI,EAAE,SAAS;gBACf,aAAa,EAAE,CAAC,QAAQ,CAAC;gBACzB,OAAO,EAAE;oBACP,GAAG,YAAY;oBACf,eAAe,EAAE,OAAO,CAAC,gBAAgB,EAAE,CAAC,UAAU,EAAE,SAAS,CAAC,CAAC;iBACpE;aACF,CAAC,CAAA;YACF,IAAI,KAAK,CAAC,IAAI,EAAE;gBACd,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;gBAC7B,IACE,UAAU;oBACV,cAAc;oBACd,yBAAyB,CAAC,YAAY,CAAC,IAAI,CAAC,EAC5C;oBACA,MAAM,IAAI,GAAG,gBAAgB,IAAI;wBAC/B,UAAU,EAAE,CAAC,MAAM,EAAE,IAAI,CAAC;wBAC1B,OAAO,EAAE,CAAC,KAAK,EAAE,MAAM,CAAC;qBACzB,CAAA;oBACD,MAAM,SAAS,GAAG,SAAS,GAAG,QAAQ,CAAA;oBACtC,MAAM,QAAQ,GAAG;wBACf,cAAc,EAAE;4BACd,GAAG,IAAI;4BACP,UAAU,EAAE,CAAC,QAAQ,CAAC;4BACtB,MAAM,EAAE,CAAC,OAAO,CAAC;4BACjB,SAAS,EAAE,UAAU;4BACrB,IAAI,EAAE,SAAS;4BACf,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;yBACpC;wBACD,IAAI,EAAE,SAAS;wBACf,cAAc,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,QAAQ,EAAE;qBAC7C,CAAA;oBACD,WAAW,CAAC,QAAQ,CAAC,QAAQ,CAAC,CAAA;iBAC/B;aACF;iBAAM;gBACL,OAAO,CAAC,MAAM,CACZ,oFAAoF,EACpF,MAAM,CACP,CAAA;aACF;YACD,KAAK,CAAC,SAAS,EAAE,CAAA;YACjB,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;SAC1B;aAAM;YACL,oBAAoB,CAClB,kFAAkF,CACnF,CAAA;SACF;IACH,CAAC;IAED,SAAS,UAAU;QACjB,oBAAoB,CAAC,SAAS,CAAC,CAAA;QAC/B,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;IAC/B,CAAC;IAED,SAAS,cAAc;QACrB,QAAQ,UAAU,EAAE;YAClB,KAAK,CAAC;gBACJ,OAAO,CAAC,SAAS,CAAA;YACnB,KAAK,CAAC;gBACJ,OAAO,CAAC,CAAC,SAAS,IAAI,SAAS,KAAI,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,IAAI,CAAA,IAAI,QAAQ,CAAC,CAAA;YACpE;gBACE,OAAO,IAAI,CAAA;SACd;IACH,CAAC;IAED,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,oBAAC,OAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,UAAU,EAAE,UAAU,EACtB,WAAW,EAAC,UAAU,IAErB,KAAK,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,GAAG,EAAE,EAAE,CAAC,CACzB,oBAAC,IAAI,IAAC,GAAG,EAAE,KAAK;YACd,oBAAC,SAAS,QAAE,KAAK,CAAa;YAC9B,oBAAC,WAAW;gBACT,cAAc,CAAC,GAAG,CAAC;gBACpB,6BAAK,SAAS,EAAE,OAAO,CAAC,gBAAgB;oBACtC,oBAAC,MAAM,IACL,QAAQ,EAAE,UAAU,KAAK,CAAC,EAC1B,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,WAGlB;oBACT,oBAAC,MAAM,IACL,QAAQ,EAAE,cAAc,EAAE,EAC1B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,UAAU,EACnB,SAAS,EAAE,OAAO,CAAC,MAAM,iBACb,oBAAoB,IAE/B,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAC1C,CACL;gBACL,iBAAiB,CAAC,CAAC,CAAC,CACnB,6BAAK,SAAS,EAAE,OAAO,CAAC,cAAc;oBACpC,oBAAC,KAAK,IAAC,QAAQ,EAAC,OAAO,IAAE,iBAAiB,CAAS,CAC/C,CACP,CAAC,CAAC,CAAC,IAAI,CACI,CACT,CACR,CAAC,CACM,CACN,CACP,CAAA;AACH,CAAC;AACD,eAAe,QAAQ,CAAC,gBAAgB,CAAC,CAAA"}

package/esm/AddTrackWidget/components/PasteConfigWorkflow.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare function AddTrackWorkflow({ model }: {
     model: AddTrackModel;

package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts CHANGED Viewed

@@ -1,6 +1,5 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
-declare const TextIndexingConfig: ({ model }: {
+declare const TextIndexingConfig: ({ model, }: {
     model: AddTrackModel;
 }) => JSX.Element;
 export default TextIndexingConfig;

package/esm/AddTrackWidget/components/TextIndexingConfig.js CHANGED Viewed

@@ -15,7 +15,7 @@ const useStyles = makeStyles()(theme => ({
         marginTop: theme.spacing(1),
     },
 }));
-const TextIndexingConfig = observer(({ model }) => {
+const TextIndexingConfig = observer(function ({ model, }) {
     const { classes } = useStyles();
     const [value1, setValue1] = useState('');
     const [value2, setValue2] = useState('');
@@ -44,9 +44,7 @@ const TextIndexingConfig = observer(({ model }) => {
                         React.createElement(TextField, { value: val, InputProps: {
                                 endAdornment: (React.createElement(InputAdornment, { position: "end" },
                                     React.createElement(IconButton, { onClick: () => {
-                                            const newAttr = section.values.filter((a, i) => {
-                                                return i !== idx;
-                                            });
+                                            const newAttr = section.values.filter((_, i) => i !== idx);
                                             index === 0
                                                 ? setAttributes(newAttr)
                                                 : setExclude(newAttr);
@@ -62,15 +60,11 @@ const TextIndexingConfig = observer(({ model }) => {
                                 endAdornment: (React.createElement(InputAdornment, { position: "end" },
                                     React.createElement(IconButton, { onClick: () => {
                                             if (index === 0) {
-                                                const newAttr = attributes;
-                                                newAttr.push(value1);
-                                                setAttributes(newAttr);
+                                                setAttributes([...attributes, value1]);
                                                 setValue1('');
                                             }
                                             else {
-                                                const newFeat = exclude;
-                                                newFeat.push(value2);
-                                                setExclude(newFeat);
+                                                setExclude([...exclude, value2]);
                                                 setValue2('');
                                             }
                                         }, disabled: index === 0 ? value1 === '' : value2 === '', "data-testid": `stringArrayAdd-Feat` },

package/esm/AddTrackWidget/components/TextIndexingConfig.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare const TrackAdapterSelector: ({ model }: {
     model: AddTrackModel;

package/esm/AddTrackWidget/components/TrackSourceSelect.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare function TrackSourceSelect({ model }: {
     model: AddTrackModel;

package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare const TrackTypeSelector: ({ model }: {
     model: AddTrackModel;

package/esm/AssemblyManager/AssemblyAddForm.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare const AssemblyAddForm: ({ rootModel, setFormOpen, }: {
     rootModel: any;
     setFormOpen: Function;

package/esm/AssemblyManager/AssemblyEditor.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare const AssemblyEditor: ({ assembly, }: {
     assembly: any;
 }) => JSX.Element;

package/esm/AssemblyManager/AssemblyManager.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare const AssemblyManager: ({ rootModel, onClose, }: {
     rootModel: any;
     onClose: (arg: boolean) => void;

package/esm/AssemblyManager/AssemblyTable.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 declare const AssemblyTable: ({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }: {
     rootModel: {

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const HierarchicalTrackSelectorContainer: ({ model, toolbarHeight, overrideDimensions, }: {
     model: HierarchicalTrackSelectorModel;

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js CHANGED Viewed

@@ -8,7 +8,7 @@ import HierarchicalHeader from './tree/HierarchicalHeader';
 // jest tests
 const AutoSizedHierarchicalTree = ({ tree, model, offset, }) => {
     return typeof jest === 'undefined' ? (React.createElement(AutoSizer, { disableWidth: true }, ({ height }) => {
-        return (React.createElement(HierarchicalTree, { height: height - offset, model: model, tree: tree }));
+        return (React.createElement(HierarchicalTree, { height: (height || offset) - offset, model: model, tree: tree }));
     })) : (React.createElement(HierarchicalTree, { height: 9000, model: model, tree: tree }));
 };
 const Wrapper = ({ overrideDimensions, children, }) => {

package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare function CloseConnectionDialog({ modalInfo, setModalInfo, }: {
     modalInfo?: {
         name?: string;

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts CHANGED Viewed

@@ -1,5 +1,4 @@
-/// <reference types="react" />
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 declare function DeleteConnectionDialog({ deleteDialogDetails, session, handleClose, }: {
     deleteDialogDetails: {

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 declare function ManageConnectionsDlg({ session, handleClose, breakConnection, }: {

package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 export declare function ellipses(slug: string): string;

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 export default function FacetFilters({ rows, columns, dispatch, filters, width, }: {
     rows: Record<string, unknown>[];
     filters: Record<string, string[]>;

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../../model';
 declare function FacetedDlg(props: {
     handleClose: () => void;

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts CHANGED Viewed

@@ -1,10 +1,11 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../../model';
-export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, hideSparse, useShoppingCart, filterText, model, }: {
+export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, setShowOptions, showOptions, hideSparse, useShoppingCart, filterText, model, }: {
     setFilterText: (arg: string) => void;
     setUseShoppingCart: (arg: boolean) => void;
     setHideSparse: (arg: boolean) => void;
+    setShowOptions: (arg: boolean) => void;
     filterText: string;
+    showOptions: boolean;
     useShoppingCart: boolean;
     hideSparse: boolean;
     model: HierarchicalTrackSelectorModel;

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js CHANGED Viewed

@@ -6,7 +6,7 @@ import ClearIcon from '@mui/icons-material/Clear';
 import MoreVert from '@mui/icons-material/MoreVert';
 // locals
 import ShoppingCart from '../ShoppingCart';
-export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, hideSparse, useShoppingCart, filterText, model, }) {
+export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, setShowOptions, showOptions, hideSparse, useShoppingCart, filterText, model, }) {
     const [anchorEl, setAnchorEl] = useState(null);
     return (React.createElement(React.Fragment, null,
         React.createElement(Grid, { container: true, spacing: 4, alignItems: "center" },
@@ -37,6 +37,12 @@ export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHi
                     checked: hideSparse,
                     type: 'checkbox',
                 },
+                {
+                    label: 'Show extra table options',
+                    onClick: () => setShowOptions(!showOptions),
+                    checked: showOptions,
+                    type: 'checkbox',
+                },
             ] })));
 }
 //# sourceMappingURL=FacetedHeader.js.map

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { HierarchicalTrackSelectorModel } from '../../model';
 export interface InfoArgs {

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js CHANGED Viewed

@@ -3,10 +3,11 @@ import { IconButton } from '@mui/material';
 import { transaction } from 'mobx';
 import { observer } from 'mobx-react';
 import { getRoot, resolveIdentifier } from 'mobx-state-tree';
-import { DataGrid } from '@mui/x-data-grid';
+import { DataGrid, GridToolbar } from '@mui/x-data-grid';
 // jbrowse
 import { getTrackName } from '@jbrowse/core/util/tracks';
-import { ResizeHandle, SanitizedHTML } from '@jbrowse/core/ui';
+import { ResizeHandle } from '@jbrowse/core/ui';
+import SanitizedHTML from '@jbrowse/core/ui/SanitizedHTML';
 import JBrowseMenu from '@jbrowse/core/ui/Menu';
 import ResizeBar, { useResizeBar } from '@jbrowse/core/ui/ResizeBar';
 import { getEnv, getSession, measureGridWidth, useDebounce, } from '@jbrowse/core/util';
@@ -26,6 +27,7 @@ export default observer(function FacetedSelector({ model, }) {
     const { pluginManager } = getEnv(model);
     const { ref, scrollLeft } = useResizeBar();
     const [filterText, setFilterText] = useState('');
+    const [showOptions, setShowOptions] = useState(false);
     const [info, setInfo] = useState();
     const [useShoppingCart, setUseShoppingCart] = useState(false);
     const [hideSparse, setHideSparse] = useState(true);
@@ -143,7 +145,7 @@ export default observer(function FacetedSelector({ model, }) {
                 callback();
                 setInfo(undefined);
             }, open: !!info, onClose: () => setInfo(undefined) })) : null,
-        React.createElement(FacetedHeader, { setHideSparse: setHideSparse, setFilterText: setFilterText, setUseShoppingCart: setUseShoppingCart, hideSparse: hideSparse, filterText: filterText, useShoppingCart: useShoppingCart, model: model }),
+        React.createElement(FacetedHeader, { setHideSparse: setHideSparse, setShowOptions: setShowOptions, setFilterText: setFilterText, setUseShoppingCart: setUseShoppingCart, hideSparse: hideSparse, showOptions: showOptions, filterText: filterText, useShoppingCart: useShoppingCart, model: model }),
         React.createElement("div", { ref: ref, style: {
                 display: 'flex',
                 overflow: 'hidden',
@@ -158,7 +160,7 @@ export default observer(function FacetedSelector({ model, }) {
                         entry[0],
                         newWidths[idx],
                     ]))), scrollLeft: scrollLeft }),
-                React.createElement(DataGrid, { rows: rows.filter(row => arrFilters.every(([key, val]) => val.includes(row[key]))), columnVisibilityModel: visible, onColumnVisibilityModelChange: newModel => setVisible(newModel), headerHeight: 35, checkboxSelection: true, disableSelectionOnClick: true, keepNonExistentRowsSelected: true, onSelectionModelChange: userSelectedIds => {
+                React.createElement(DataGrid, { rows: rows.filter(row => arrFilters.every(([key, val]) => val.includes(row[key]))), columnVisibilityModel: visible, onColumnVisibilityModelChange: newModel => setVisible(newModel), columnHeaderHeight: 35, checkboxSelection: true, disableRowSelectionOnClick: true, keepNonExistentRowsSelected: true, onRowSelectionModelChange: userSelectedIds => {
                         if (!useShoppingCart) {
                             const a1 = shownTrackIds;
                             const a2 = userSelectedIds;
@@ -175,7 +177,9 @@ export default observer(function FacetedSelector({ model, }) {
                             const tracks = userSelectedIds.map(id => resolveIdentifier(schema, root, id));
                             model.setSelection(tracks);
                         }
-                    }, selectionModel: useShoppingCart ? selection.map(s => s.trackId) : shownTrackIds, columns: columns, rowHeight: 25 })),
+                    }, rowSelectionModel: useShoppingCart ? selection.map(s => s.trackId) : shownTrackIds, slots: { toolbar: showOptions ? GridToolbar : null }, slotProps: {
+                        toolbar: { printOptions: { disableToolbarButton: true } },
+                    }, columns: columns, rowHeight: 25 })),
             React.createElement(ResizeHandle, { vertical: true, onDrag: dist => setPanelWidth(panelWidth - dist), style: { background: 'grey', width: 5 } }),
             React.createElement("div", { style: { width: panelWidth, overflowY: 'auto', overflowX: 'hidden' } },
                 React.createElement(FacetFilters, { width: panelWidth - 10, rows: rows, columns: columns, dispatch: dispatch, filters: filters })))));

package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../../model';
 declare const _default: ({ model, setAssemblyIdx, }: {
     model: HierarchicalTrackSelectorModel;

package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../../model';
 declare function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyIdx, }: {
     model: HierarchicalTrackSelectorModel;

package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { TreeNode, HierarchicalTrackSelectorModel } from '../../model';
 declare const _default: ({ height, tree, model, }: {
     height: number;

package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { NodeData } from '../util';
 export default function Category({ isOpen, setOpen, data, }: {
     isOpen: boolean;

package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { NodeData } from '../util';
 export interface InfoArgs {

package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { NodeData } from '../util';
 export default function Node({ data, isOpen, style, setOpen, }: {
     data: NodeData;

package/esm/HierarchicalTrackSelectorWidget/configSchema.d.ts CHANGED Viewed

@@ -1,2 +1,2 @@
-declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
 export default configSchema;

package/esm/PluginStoreWidget/components/CustomPluginForm.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { PluginStoreModel } from '../model';
 declare function CustomPluginForm({ open, onClose, model, }: {
     open: boolean;

package/esm/PluginStoreWidget/components/CustomPluginForm.js CHANGED Viewed

@@ -1,7 +1,8 @@
 import React, { useState } from 'react';
 import { observer } from 'mobx-react';
 import { getRoot } from 'mobx-state-tree';
-import { Button, Collapse, Dialog, DialogActions, DialogContent, DialogContentText, TextField, } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
+import { Button, Collapse, DialogActions, DialogContent, DialogContentText, TextField, } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 // icons
 import IconButton from '@mui/material/IconButton';
@@ -29,43 +30,19 @@ function CustomPluginForm({ open, onClose, model, }) {
     const [esmPluginUrl, setESMPluginUrl] = useState('');
     const [cjsPluginUrl, setCJSPluginUrl] = useState('');
     const [advancedOptionsOpen, setAdvancedOptionsOpen] = useState(false);
-    function handleChange(event) {
-        const { name, value } = event.target;
-        if (name === 'umdName') {
-            setUMDPluginName(value);
-        }
-        if (name === 'umdUrl') {
-            setUMDPluginUrl(value);
-        }
-        if (name === 'esmUrl') {
-            setESMPluginUrl(value);
-        }
-        if (name === 'cjsUrl') {
-            setCJSPluginUrl(value);
-        }
-    }
-    function handleOpenAdvancedOptions() {
-        setAdvancedOptionsOpen(!advancedOptionsOpen);
-    }
     // eslint-disable-next-line @typescript-eslint/no-explicit-any
     const { jbrowse } = getRoot(model);
     const ready = Boolean((umdPluginName && umdPluginUrl) || esmPluginUrl || cjsPluginUrl);
     function handleSubmit() {
-        if (!ready) {
-            return;
-        }
-        const pluginDefinition = {};
         if (umdPluginName && umdPluginUrl) {
-            pluginDefinition.name = umdPluginName;
-            pluginDefinition.umdUrl = umdPluginUrl;
+            jbrowse.addPlugin({ name: umdPluginName, umdUrl: umdPluginUrl });
         }
         if (esmPluginUrl) {
-            pluginDefinition.esmUrl = esmPluginUrl;
+            jbrowse.addPlugin({ esmUrl: esmPluginUrl });
         }
         if (cjsPluginUrl) {
-            pluginDefinition.cjsUrl = cjsPluginUrl;
+            jbrowse.addPlugin({ cjsUrl: cjsPluginUrl });
         }
-        jbrowse.addPlugin(pluginDefinition);
     }
     function handleClose() {
         setUMDPluginName('');
@@ -78,9 +55,9 @@ function CustomPluginForm({ open, onClose, model, }) {
         React.createElement("form", { onSubmit: handleSubmit },
             React.createElement(DialogContent, { className: classes.dialogContent },
                 React.createElement(DialogContentText, null, "Enter the name of the plugin and its URL. The name should match what is defined in the plugin's build."),
-                React.createElement(TextField, { id: "umd-name-input", name: "umdName", label: "Plugin name", variant: "outlined", value: umdPluginName, onChange: handleChange }),
-                React.createElement(TextField, { id: "umd-url-input", name: "umdUrl", label: "Plugin URL", variant: "outlined", value: umdPluginUrl, onChange: handleChange }),
-                React.createElement(DialogContentText, { onClick: handleOpenAdvancedOptions },
+                React.createElement(TextField, { id: "umd-name-input", name: "umdName", label: "Plugin name", variant: "outlined", value: umdPluginName, onChange: event => setUMDPluginName(event.target.value) }),
+                React.createElement(TextField, { id: "umd-url-input", name: "umdUrl", label: "Plugin URL", variant: "outlined", value: umdPluginUrl, onChange: event => setUMDPluginUrl(event.target.value) }),
+                React.createElement(DialogContentText, { onClick: () => setAdvancedOptionsOpen(!advancedOptionsOpen) },
                     React.createElement(IconButton, { className: cx(classes.expand, {
                             [classes.expandOpen]: advancedOptionsOpen,
                         }), "aria-expanded": advancedOptionsOpen, "aria-label": "show more" },
@@ -89,8 +66,8 @@ function CustomPluginForm({ open, onClose, model, }) {
                 React.createElement(Collapse, { in: advancedOptionsOpen },
                     React.createElement("div", { className: classes.dialogContent },
                         React.createElement(DialogContentText, null, "The above fields assume that the plugin is built in UMD format. If your plugin is in another format, or you have additional builds you want to add (such as a CJS build for using NodeJS APIs in desktop), you can enter the URLs for those builds below."),
-                        React.createElement(TextField, { id: "esm-url-input", name: "esmUrl", label: "ESM build URL", variant: "outlined", value: esmPluginUrl, onChange: handleChange }),
-                        React.createElement(TextField, { id: "cjs-url-input", name: "cjsUrl", label: "CJS build URL", variant: "outlined", value: cjsPluginUrl, onChange: handleChange })))),
+                        React.createElement(TextField, { id: "esm-url-input", name: "esmUrl", label: "ESM build URL", variant: "outlined", value: esmPluginUrl, onChange: event => setESMPluginUrl(event.target.value) }),
+                        React.createElement(TextField, { id: "cjs-url-input", name: "cjsUrl", label: "CJS build URL", variant: "outlined", value: cjsPluginUrl, onChange: event => setCJSPluginUrl(event.target.value) })))),
             React.createElement(DialogActions, null,
                 React.createElement(Button, { variant: "contained", onClick: handleClose }, "Cancel"),
                 React.createElement(Button, { variant: "contained", color: "primary", onClick: handleSubmit, disabled: !ready }, "Submit")))));

package/esm/PluginStoreWidget/components/CustomPluginForm.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import PluginManager from '@jbrowse/core/PluginManager';
 import { BasePlugin } from '@jbrowse/core/util/types';
 import { PluginStoreModel } from '../model';

package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import PluginManager from '@jbrowse/core/PluginManager';
 import { PluginStoreModel } from '../model';
 declare function InstalledPluginsList({ pluginManager, model, }: {

package/esm/PluginStoreWidget/components/PluginCard.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { JBrowsePlugin } from '@jbrowse/core/util/types';
 import { PluginStoreModel } from '../model';
 declare const _default: ({ plugin, model, adminMode, }: {

package/esm/PluginStoreWidget/components/PluginStoreWidget.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { PluginStoreModel } from '../model';
 declare function PluginStoreWidget({ model }: {
     model: PluginStoreModel;