@jbrowse/plugin-data-management 2.4.1 → 2.5.0

package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts

@@ -1,6 +1,4 @@
-/// <reference types="react" />
-declare function AddConnectionWidget({ model }: {
+declare const _default: ({ model, }: {
     model: unknown;
-}): JSX.Element;
-declare const _default: typeof AddConnectionWidget;
+}) => JSX.Element;
 export default _default;

package/dist/AddConnectionWidget/components/AddConnectionWidget.js

@@ -27,8 +27,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const util_1 = require("@jbrowse/core/util");
 const material_1 = require("@mui/material");
+const util_1 = require("@jbrowse/core/util");
 const mui_1 = require("tss-react/mui");
 const mobx_react_1 = require("mobx-react");
 // locals
@@ -50,59 +50,38 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
     },
 }));
 const steps = ['Select a Connection Type', 'Configure Connection'];
-function AddConnectionWidget({ model }) {
+exports.default = (0, mobx_react_1.observer)(function AddConnectionWidget({ model, }) {
     const [connectionType, setConnectionType] = (0, react_1.useState)();
     const [configModel, setConfigModel] = (0, react_1.useState)();
     const [activeStep, setActiveStep] = (0, react_1.useState)(0);
     const { classes } = useStyles();
     const session = (0, util_1.getSession)(model);
     const { pluginManager } = (0, util_1.getEnv)(session);
-    function stepContent() {
-        switch (activeStep) {
-            case 0:
-                return (react_1.default.createElement(ConnectionTypeSelect_1.default, { connectionTypeChoices: pluginManager.getElementTypesInGroup('connection'), connectionType: connectionType, setConnectionType: c => {
-                        setConnectionType(c);
-                        if (c) {
-                            setConfigModel(c.configSchema.create({
-                                connectionId: `${c.name}-${Date.now()}`,
-                            }, (0, util_1.getEnv)(model)));
-                        }
-                    } }));
-            case 1:
-                return connectionType && configModel ? (react_1.default.createElement(ConfigureConnection_1.default, { connectionType: connectionType, model: configModel, session: session })) : null;
-            default:
-                return react_1.default.createElement(material_1.Typography, null, "Unknown step");
-        }
-    }
-    function handleNext() {
-        if (activeStep === steps.length - 1) {
-            handleFinish();
-        }
-        else {
-            setActiveStep(activeStep + 1);
-        }
-    }
-    function handleBack() {
-        setActiveStep(activeStep - 1);
-    }
-    function handleFinish() {
-        const connectionConf = session.addConnectionConf(configModel);
-        if (session.makeConnection) {
-            session.makeConnection(connectionConf);
-        }
-        session.hideWidget(model);
-    }
-    function checkNextEnabled() {
-        return ((activeStep === 0 && connectionType) || (activeStep === 1 && configModel));
-    }
     return (react_1.default.createElement("div", { className: classes.root },
         react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(label => (react_1.default.createElement(material_1.Step, { key: label },
             react_1.default.createElement(material_1.StepLabel, null, label),
             react_1.default.createElement(material_1.StepContent, null,
-                stepContent(),
+                activeStep === 0 ? (react_1.default.createElement(ConnectionTypeSelect_1.default, { connectionTypeChoices: pluginManager.getConnectionElements(), connectionType: connectionType, setConnectionType: c => {
+                        setConnectionType(c);
+                        if (!c) {
+                            return;
+                        }
+                        const connectionId = `${c.name}-${Date.now()}`;
+                        setConfigModel(c.configSchema.create({ connectionId }, (0, util_1.getEnv)(model)));
+                    } })) : connectionType && configModel ? (react_1.default.createElement(ConfigureConnection_1.default, { connectionType: connectionType, model: configModel, session: session })) : null,
                 react_1.default.createElement("div", { className: classes.actionsContainer },
-                    react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
-                    react_1.default.createElement(material_1.Button, { disabled: !checkNextEnabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next')))))))));
-}
-exports.default = (0, mobx_react_1.observer)(AddConnectionWidget);
+                    react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: () => setActiveStep(activeStep - 1), className: classes.button }, "Back"),
+                    react_1.default.createElement(material_1.Button, { disabled: !((activeStep === 0 && connectionType) ||
+                            (activeStep === 1 && configModel)), variant: "contained", color: "primary", onClick: () => {
+                            var _a;
+                            if (activeStep === steps.length - 1) {
+                                const conf = session.addConnectionConf(configModel);
+                                (_a = session.makeConnection) === null || _a === void 0 ? void 0 : _a.call(session, conf);
+                                session.hideWidget(model);
+                            }
+                            else {
+                                setActiveStep(activeStep + 1);
+                            }
+                        }, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next')))))))));
+});
 //# sourceMappingURL=AddConnectionWidget.js.map

package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AddConnectionWidget.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/AddConnectionWidget.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAA6E;AAC7E,6CAAuD;AACvD,uCAA0C;AAC1C,2CAAqC;AAIrC,SAAS;AACT,gFAAuD;AACvD,kFAAyD;AAEzD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;IACD,OAAO,EAAE;QACP,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;KAClD;IACD,MAAM,EAAE;QACN,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC3B,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC9B;IACD,gBAAgB,EAAE;QAChB,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,KAAK,GAAG,CAAC,0BAA0B,EAAE,sBAAsB,CAAC,CAAA;AAElE,kBAAe,IAAA,qBAAQ,EAAC,SAAS,mBAAmB,CAAC,EACnD,KAAK,GAGN;IACC,MAAM,CAAC,cAAc,EAAE,iBAAiB,CAAC,GAAG,IAAA,gBAAQ,GAAkB,CAAA;IACtE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,IAAA,gBAAQ,GAAyB,CAAA;IACvE,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,CAAC,CAAA;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,OAAO,CAAC,CAAA;IAEzC,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,IAAI;QAC1B,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,UAAU,EAAE,UAAU,EACtB,WAAW,EAAC,UAAU,IAErB,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,8BAAC,eAAI,IAAC,GAAG,EAAE,KAAK;YACd,8BAAC,oBAAS,QAAE,KAAK,CAAa;YAC9B,8BAAC,sBAAW;gBACT,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,CAClB,8BAAC,8BAAoB,IACnB,qBAAqB,EAAE,aAAa,CAAC,qBAAqB,EAAE,EAC5D,cAAc,EAAE,cAAc,EAC9B,iBAAiB,EAAE,CAAC,CAAC,EAAE;wBACrB,iBAAiB,CAAC,CAAC,CAAC,CAAA;wBACpB,IAAI,CAAC,CAAC,EAAE;4BACN,OAAM;yBACP;wBACD,MAAM,YAAY,GAAG,GAAG,CAAC,CAAC,IAAI,IAAI,IAAI,CAAC,GAAG,EAAE,EAAE,CAAA;wBAC9C,cAAc,CACZ,CAAC,CAAC,YAAY,CAAC,MAAM,CAAC,EAAE,YAAY,EAAE,EAAE,IAAA,aAAM,EAAC,KAAK,CAAC,CAAC,CACvD,CAAA;oBACH,CAAC,GACD,CACH,CAAC,CAAC,CAAC,cAAc,IAAI,WAAW,CAAC,CAAC,CAAC,CAClC,8BAAC,6BAAmB,IAClB,cAAc,EAAE,cAAc,EAC9B,KAAK,EAAE,WAAW,EAClB,OAAO,EAAE,OAAO,GAChB,CACH,CAAC,CAAC,CAAC,IAAI;gBACR,uCAAK,SAAS,EAAE,OAAO,CAAC,gBAAgB;oBACtC,8BAAC,iBAAM,IACL,QAAQ,EAAE,UAAU,KAAK,CAAC,EAC1B,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,EAC5C,SAAS,EAAE,OAAO,CAAC,MAAM,WAGlB;oBACT,8BAAC,iBAAM,IACL,QAAQ,EACN,CAAC,CACC,CAAC,UAAU,KAAK,CAAC,IAAI,cAAc,CAAC;4BACpC,CAAC,UAAU,KAAK,CAAC,IAAI,WAAW,CAAC,CAClC,EAEH,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,GAAG,EAAE;;4BACZ,IAAI,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE;gCACnC,MAAM,IAAI,GAAG,OAAO,CAAC,iBAAiB,CAAC,WAAW,CAAC,CAAA;gCACnD,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;gCAC9B,OAAO,CAAC,UAAU,CAAC,KAAK,CAAC,CAAA;6BAC1B;iCAAM;gCACL,aAAa,CAAC,UAAU,GAAG,CAAC,CAAC,CAAA;6BAC9B;wBACH,CAAC,EACD,SAAS,EAAE,OAAO,CAAC,MAAM,iBACb,mBAAmB,IAE9B,UAAU,KAAK,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,MAAM,CAC9C,CACL,CACM,CACT,CACR,CAAC,CACM,CACN,CACP,CAAA;AACH,CAAC,CAAC,CAAA"}

package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts

@@ -1,10 +1,9 @@
-/// <reference types="react" />
 import { ConnectionType } from '@jbrowse/core/pluggableElementTypes';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
-declare const ConfigureConnection: (props: {
+declare const _default: ({ connectionType, model, session, }: {
     connectionType: ConnectionType;
     model: AnyConfigurationModel;
     session: AbstractSessionModel;
 }) => JSX.Element;
-export default ConfigureConnection;
+export default _default;

package/dist/AddConnectionWidget/components/ConfigureConnection.js

@@ -27,11 +27,9 @@ const react_1 = __importStar(require("react"));
 const mobx_react_1 = require("mobx-react");
 const plugin_config_1 = require("@jbrowse/plugin-config");
 const ui_1 = require("@jbrowse/core/ui");
-const ConfigureConnection = (0, mobx_react_1.observer)((props) => {
-    const { connectionType, model, session } = props;
+exports.default = (0, mobx_react_1.observer)(function ({ connectionType, model, session, }) {
     const ConfigEditorComponent = connectionType.configEditorComponent || plugin_config_1.ConfigurationEditor;
     return (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement(ui_1.LoadingEllipses, null) },
         react_1.default.createElement(ConfigEditorComponent, { model: { target: model }, session: session })));
 });
-exports.default = ConfigureConnection;
 //# sourceMappingURL=ConfigureConnection.js.map

package/dist/AddConnectionWidget/components/ConfigureConnection.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ConfigureConnection.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConfigureConnection.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,0DAA4D;AAI5D,yCAAkD;AAElD,kBAAe,IAAA,qBAAQ,EAAC,UAAU,EAChC,cAAc,EACd,KAAK,EACL,OAAO,GAKR;IACC,MAAM,qBAAqB,GACzB,cAAc,CAAC,qBAAqB,IAAI,mCAAmB,CAAA;IAE7D,OAAO,CACL,8BAAC,gBAAQ,IAAC,QAAQ,EAAE,8BAAC,oBAAe,OAAG;QACrC,8BAAC,qBAAqB,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,OAAO,GAAI,CAC5D,CACZ,CAAA;AACH,CAAC,CAAC,CAAA"}

package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts

@@ -1,8 +1,7 @@
-/// <reference types="react" />
 import { ConnectionType } from '@jbrowse/core/pluggableElementTypes';
-declare function ConnectionTypeSelect(props: {
+declare const _default: ({ connectionTypeChoices, connectionType, setConnectionType, }: {
     connectionTypeChoices: ConnectionType[];
-    connectionType?: ConnectionType;
+    connectionType?: ConnectionType | undefined;
     setConnectionType: (c?: ConnectionType) => void;
-}): JSX.Element;
-export default ConnectionTypeSelect;
+}) => JSX.Element;
+export default _default;

package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js

@@ -28,10 +28,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 // icons
 const OpenInNew_1 = __importDefault(require("@mui/icons-material/OpenInNew"));
-function ConnectionTypeSelect(props) {
-    const { connectionTypeChoices, connectionType, setConnectionType } = props;
+exports.default = (0, mobx_react_1.observer)(function ConnectionTypeSelect({ connectionTypeChoices, connectionType, setConnectionType, }) {
     (0, react_1.useEffect)(() => {
         if (!connectionType) {
             setConnectionType(connectionTypeChoices[0]);
@@ -41,6 +41,5 @@ function ConnectionTypeSelect(props) {
             connectionType.description,
             connectionType.url ? (react_1.default.createElement(material_1.IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank" },
                 react_1.default.createElement(OpenInNew_1.default, null))) : null)) : null, select: true, fullWidth: true, onChange: event => setConnectionType(connectionTypeChoices.find(c => c.name === event.target.value)), variant: "outlined" }, connectionTypeChoices.map(c => (react_1.default.createElement(material_1.MenuItem, { key: c.name, value: c.name }, c.displayName || c.name))))) : null));
-}
-exports.default = ConnectionTypeSelect;
+});
 //# sourceMappingURL=ConnectionTypeSelect.js.map

package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js.map

@@ -1 +1 @@
-{"version":3,"file":"ConnectionTypeSelect.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConnectionTypeSelect.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAwC;AACxC,4CAA+D;AAG/D,QAAQ;AACR,8EAAyD;AAEzD,SAAS,oBAAoB,CAAC,KAI7B;IACC,MAAM,EAAE,qBAAqB,EAAE,cAAc,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAE1E,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,CAAC,cAAc,EAAE;YACnB,iBAAiB,CAAC,qBAAqB,CAAC,CAAC,CAAC,CAAC,CAAA;SAC5C;IACH,CAAC,CAAC,CAAA;IAEF,OAAO,CACL,wCAAM,YAAY,EAAC,KAAK,IACrB,cAAc,CAAC,CAAC,CAAC,CAChB,8BAAC,oBAAS,IACR,KAAK,EAAE,cAAc,CAAC,IAAI,EAC1B,KAAK,EAAC,gBAAgB,EACtB,UAAU,EACR,cAAc,CAAC,WAAW,CAAC,CAAC,CAAC,CAC3B;YACG,cAAc,CAAC,WAAW;YAC1B,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,CACpB,8BAAC,qBAAU,IACT,IAAI,EAAE,cAAc,CAAC,GAAG,EACxB,GAAG,EAAC,qBAAqB,EACzB,MAAM,EAAC,QAAQ;gBAEf,8BAAC,mBAAa,OAAG,CACN,CACd,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,EAEV,MAAM,QACN,SAAS,QACT,QAAQ,EAAE,KAAK,CAAC,EAAE,CAChB,iBAAiB,CACf,qBAAqB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAC/D,EAEH,OAAO,EAAC,UAAU,IAEjB,qBAAqB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAC9B,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,IAAI,IACjC,CAAC,CAAC,WAAW,IAAI,CAAC,CAAC,IAAI,CACf,CACZ,CAAC,CACQ,CACb,CAAC,CAAC,CAAC,IAAI,CACH,CACR,CAAA;AACH,CAAC;AAED,kBAAe,oBAAoB,CAAA"}
+{"version":3,"file":"ConnectionTypeSelect.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConnectionTypeSelect.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAwC;AACxC,4CAA+D;AAE/D,2CAAqC;AAErC,QAAQ;AACR,8EAAyD;AAEzD,kBAAe,IAAA,qBAAQ,EAAC,SAAS,oBAAoB,CAAC,EACpD,qBAAqB,EACrB,cAAc,EACd,iBAAiB,GAKlB;IACC,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,CAAC,cAAc,EAAE;YACnB,iBAAiB,CAAC,qBAAqB,CAAC,CAAC,CAAC,CAAC,CAAA;SAC5C;IACH,CAAC,CAAC,CAAA;IAEF,OAAO,CACL,wCAAM,YAAY,EAAC,KAAK,IACrB,cAAc,CAAC,CAAC,CAAC,CAChB,8BAAC,oBAAS,IACR,KAAK,EAAE,cAAc,CAAC,IAAI,EAC1B,KAAK,EAAC,gBAAgB,EACtB,UAAU,EACR,cAAc,CAAC,WAAW,CAAC,CAAC,CAAC,CAC3B;YACG,cAAc,CAAC,WAAW;YAC1B,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,CACpB,8BAAC,qBAAU,IACT,IAAI,EAAE,cAAc,CAAC,GAAG,EACxB,GAAG,EAAC,qBAAqB,EACzB,MAAM,EAAC,QAAQ;gBAEf,8BAAC,mBAAa,OAAG,CACN,CACd,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,EAEV,MAAM,QACN,SAAS,QACT,QAAQ,EAAE,KAAK,CAAC,EAAE,CAChB,iBAAiB,CACf,qBAAqB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAC/D,EAEH,OAAO,EAAC,UAAU,IAEjB,qBAAqB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAC9B,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,IAAI,IACjC,CAAC,CAAC,WAAW,IAAI,CAAC,CAAC,IAAI,CACf,CACZ,CAAC,CACQ,CACb,CAAC,CAAC,CAAC,IAAI,CACH,CACR,CAAA;AACH,CAAC,CAAC,CAAA"}

package/dist/AddTrackWidget/components/AddTrackWidget.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare function AddTrackSelector({ model }: {
     model: AddTrackModel;

package/dist/AddTrackWidget/components/ConfirmTrack.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare const _default: ({ model, }: {
     model: AddTrackModel;

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare function AddTrackWorkflow({ model }: {
     model: AddTrackModel;

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js

@@ -83,7 +83,7 @@ function AddTrackWorkflow({ model }) {
             `${session.adminMode ? '' : '-sessionTrack'}`,
         ].join('');
         const assemblyInstance = session.assemblyManager.get(assembly);
-        if (trackAdapter && trackAdapter.type !== 'UNKNOWN') {
+        if (assemblyInstance && trackAdapter && trackAdapter.type !== 'UNKNOWN') {
             session.addTrackConf({
                 trackId,
                 type: trackType,

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map

@@ -1 +1 @@
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package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare function AddTrackWorkflow({ model }: {
     model: AddTrackModel;

package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts

@@ -1,6 +1,5 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
-declare const TextIndexingConfig: ({ model }: {
+declare const TextIndexingConfig: ({ model, }: {
     model: AddTrackModel;
 }) => JSX.Element;
 export default TextIndexingConfig;

package/dist/AddTrackWidget/components/TextIndexingConfig.js

@@ -43,7 +43,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         marginTop: theme.spacing(1),
     },
 }));
-const TextIndexingConfig = (0, mobx_react_1.observer)(({ model }) => {
+const TextIndexingConfig = (0, mobx_react_1.observer)(function ({ model, }) {
     const { classes } = useStyles();
     const [value1, setValue1] = (0, react_1.useState)('');
     const [value2, setValue2] = (0, react_1.useState)('');
@@ -72,9 +72,7 @@ const TextIndexingConfig = (0, mobx_react_1.observer)(({ model }) => {
                         react_1.default.createElement(material_1.TextField, { value: val, InputProps: {
                                 endAdornment: (react_1.default.createElement(material_1.InputAdornment, { position: "end" },
                                     react_1.default.createElement(material_1.IconButton, { onClick: () => {
-                                            const newAttr = section.values.filter((a, i) => {
-                                                return i !== idx;
-                                            });
+                                            const newAttr = section.values.filter((_, i) => i !== idx);
                                             index === 0
                                                 ? setAttributes(newAttr)
                                                 : setExclude(newAttr);
@@ -90,15 +88,11 @@ const TextIndexingConfig = (0, mobx_react_1.observer)(({ model }) => {
                                 endAdornment: (react_1.default.createElement(material_1.InputAdornment, { position: "end" },
                                     react_1.default.createElement(material_1.IconButton, { onClick: () => {
                                             if (index === 0) {
-                                                const newAttr = attributes;
-                                                newAttr.push(value1);
-                                                setAttributes(newAttr);
+                                                setAttributes([...attributes, value1]);
                                                 setValue1('');
                                             }
                                             else {
-                                                const newFeat = exclude;
-                                                newFeat.push(value2);
-                                                setExclude(newFeat);
+                                                setExclude([...exclude, value2]);
                                                 setValue2('');
                                             }
                                         }, disabled: index === 0 ? value1 === '' : value2 === '', "data-testid": `stringArrayAdd-Feat` },

package/dist/AddTrackWidget/components/TextIndexingConfig.js.map

@@ -1 +1 @@
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package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare const TrackAdapterSelector: ({ model }: {
     model: AddTrackModel;

package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare function TrackSourceSelect({ model }: {
     model: AddTrackModel;

package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AddTrackModel } from '../model';
 declare const TrackTypeSelector: ({ model }: {
     model: AddTrackModel;

package/dist/AssemblyManager/AssemblyAddForm.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare const AssemblyAddForm: ({ rootModel, setFormOpen, }: {
     rootModel: any;
     setFormOpen: Function;

package/dist/AssemblyManager/AssemblyEditor.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare const AssemblyEditor: ({ assembly, }: {
     assembly: any;
 }) => JSX.Element;

package/dist/AssemblyManager/AssemblyManager.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare const AssemblyManager: ({ rootModel, onClose, }: {
     rootModel: any;
     onClose: (arg: boolean) => void;

package/dist/AssemblyManager/AssemblyTable.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 declare const AssemblyTable: ({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }: {
     rootModel: {

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const HierarchicalTrackSelectorContainer: ({ model, toolbarHeight, overrideDimensions, }: {
     model: HierarchicalTrackSelectorModel;

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js

@@ -36,7 +36,7 @@ const HierarchicalHeader_1 = __importDefault(require("./tree/HierarchicalHeader"
 // jest tests
 const AutoSizedHierarchicalTree = ({ tree, model, offset, }) => {
     return typeof jest === 'undefined' ? (react_1.default.createElement(react_virtualized_auto_sizer_1.default, { disableWidth: true }, ({ height }) => {
-        return (react_1.default.createElement(HierarchicalTree_1.default, { height: height - offset, model: model, tree: tree }));
+        return (react_1.default.createElement(HierarchicalTree_1.default, { height: (height || offset) - offset, model: model, tree: tree }));
     })) : (react_1.default.createElement(HierarchicalTree_1.default, { height: 9000, model: model, tree: tree }));
 };
 const Wrapper = ({ overrideDimensions, children, }) => {

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map

@@ -1 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../model';
 declare const _default: ({ model, }: {
     model: HierarchicalTrackSelectorModel;

package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare function CloseConnectionDialog({ modalInfo, setModalInfo, }: {
     modalInfo?: {
         name?: string;

package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.d.ts

@@ -1,5 +1,4 @@
-/// <reference types="react" />
-import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 declare function DeleteConnectionDialog({ deleteDialogDetails, session, handleClose, }: {
     deleteDialogDetails: {

package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 declare function ManageConnectionsDlg({ session, handleClose, breakConnection, }: {

package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
 export declare function ellipses(slug: string): string;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 export default function FacetFilters({ rows, columns, dispatch, filters, width, }: {
     rows: Record<string, unknown>[];
     filters: Record<string, string[]>;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../../model';
 declare function FacetedDlg(props: {
     handleClose: () => void;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.d.ts

@@ -1,10 +1,11 @@
-/// <reference types="react" />
 import { HierarchicalTrackSelectorModel } from '../../model';
-export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, hideSparse, useShoppingCart, filterText, model, }: {
+export default function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, setShowOptions, showOptions, hideSparse, useShoppingCart, filterText, model, }: {
     setFilterText: (arg: string) => void;
     setUseShoppingCart: (arg: boolean) => void;
     setHideSparse: (arg: boolean) => void;
+    setShowOptions: (arg: boolean) => void;
     filterText: string;
+    showOptions: boolean;
     useShoppingCart: boolean;
     hideSparse: boolean;
     model: HierarchicalTrackSelectorModel;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js

@@ -34,7 +34,7 @@ const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
 const MoreVert_1 = __importDefault(require("@mui/icons-material/MoreVert"));
 // locals
 const ShoppingCart_1 = __importDefault(require("../ShoppingCart"));
-function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, hideSparse, useShoppingCart, filterText, model, }) {
+function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, setShowOptions, showOptions, hideSparse, useShoppingCart, filterText, model, }) {
     const [anchorEl, setAnchorEl] = (0, react_1.useState)(null);
     return (react_1.default.createElement(react_1.default.Fragment, null,
         react_1.default.createElement(material_1.Grid, { container: true, spacing: 4, alignItems: "center" },
@@ -65,6 +65,12 @@ function FacetedHeader({ setFilterText, setUseShoppingCart, setHideSparse, hideS
                     checked: hideSparse,
                     type: 'checkbox',
                 },
+                {
+                    label: 'Show extra table options',
+                    onClick: () => setShowOptions(!showOptions),
+                    checked: showOptions,
+                    type: 'checkbox',
+                },
             ] })));
 }
 exports.default = FacetedHeader;

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js.map

@@ -1 +1 @@
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+{"version":3,"file":"FacetedHeader.js","sourceRoot":"","sources":["../../../../src/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CAA2E;AAC3E,yCAAuC;AAEvC,QAAQ;AACR,sEAAiD;AACjD,4EAAmD;AAEnD,SAAS;AACT,mEAA0C;AAG1C,SAAwB,aAAa,CAAC,EACpC,aAAa,EACb,kBAAkB,EAClB,aAAa,EACb,cAAc,EACd,WAAW,EACX,UAAU,EACV,eAAe,EACf,UAAU,EACV,KAAK,GAWN;IACC,MAAM,CAAC,QAAQ,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,EAAqB,IAAI,CAAC,CAAA;IAElE,OAAO,CACL;QACE,8BAAC,eAAI,IAAC,SAAS,QAAC,OAAO,EAAE,CAAC,EAAE,UAAU,EAAC,QAAQ;YAC7C,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,oBAAS,IACR,KAAK,EAAC,WAAW,EACjB,KAAK,EAAE,UAAU,EACjB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,aAAa,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EACpD,UAAU,EAAE;wBACV,YAAY,EAAE,CACZ,8BAAC,yBAAc,IAAC,QAAQ,EAAC,KAAK;4BAC5B,8BAAC,qBAAU,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,EAAE,CAAC;gCAC1C,8BAAC,eAAS,OAAG,CACF,CACE,CAClB;qBACF,GACD,CACG;YAEP,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,qBAAU,IAAC,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,aAAa,CAAC;oBAC5D,8BAAC,kBAAQ,OAAG,CACD,CACR;YACP,8BAAC,eAAI,IAAC,IAAI;gBACR,8BAAC,sBAAY,IAAC,KAAK,EAAE,KAAK,GAAI,CACzB,CACF;QACP,8BAAC,SAAI,IACH,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,CAAC,CAAC,QAAQ,EAChB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,IAAI,CAAC,EAChC,eAAe,EAAE,CAAC,MAAM,EAAE,QAAQ,EAAE,EAAE;gBACpC,QAAQ,EAAE,CAAA;gBACV,WAAW,CAAC,IAAI,CAAC,CAAA;YACnB,CAAC,EACD,SAAS,EAAE;gBACT;oBACE,KAAK,EAAE,wDAAwD;oBAC/D,OAAO,EAAE,GAAG,EAAE,CAAC,kBAAkB,CAAC,CAAC,eAAe,CAAC;oBACnD,IAAI,EAAE,UAAU;oBAChB,OAAO,EAAE,eAAe;iBACzB;gBACD;oBACE,KAAK,EAAE,8BAA8B;oBACrC,OAAO,EAAE,GAAG,EAAE,CAAC,aAAa,CAAC,CAAC,UAAU,CAAC;oBACzC,OAAO,EAAE,UAAU;oBACnB,IAAI,EAAE,UAAU;iBACjB;gBACD;oBACE,KAAK,EAAE,0BAA0B;oBACjC,OAAO,EAAE,GAAG,EAAE,CAAC,cAAc,CAAC,CAAC,WAAW,CAAC;oBAC3C,OAAO,EAAE,WAAW;oBACpB,IAAI,EAAE,UAAU;iBACjB;aACF,GACD,CACD,CACJ,CAAA;AACH,CAAC;AAnFD,gCAmFC"}

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { HierarchicalTrackSelectorModel } from '../../model';
 export interface InfoArgs {

package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js

@@ -35,6 +35,7 @@ const x_data_grid_1 = require("@mui/x-data-grid");
 // jbrowse
 const tracks_1 = require("@jbrowse/core/util/tracks");
 const ui_1 = require("@jbrowse/core/ui");
+const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
 const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
 const ResizeBar_1 = __importStar(require("@jbrowse/core/ui/ResizeBar"));
 const util_1 = require("@jbrowse/core/util");
@@ -54,6 +55,7 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
     const { pluginManager } = (0, util_1.getEnv)(model);
     const { ref, scrollLeft } = (0, ResizeBar_1.useResizeBar)();
     const [filterText, setFilterText] = (0, react_1.useState)('');
+    const [showOptions, setShowOptions] = (0, react_1.useState)(false);
     const [info, setInfo] = (0, react_1.useState)();
     const [useShoppingCart, setUseShoppingCart] = (0, react_1.useState)(false);
     const [hideSparse, setHideSparse] = (0, react_1.useState)(true);
@@ -135,7 +137,7 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
             renderCell: (params) => {
                 const { value, id, row } = params;
                 return (react_1.default.createElement(react_1.default.Fragment, null,
-                    react_1.default.createElement(ui_1.SanitizedHTML, { html: value }),
+                    react_1.default.createElement(SanitizedHTML_1.default, { html: value }),
                     react_1.default.createElement(material_1.IconButton, { onClick: e => setInfo({
                             target: e.currentTarget,
                             id: id,
@@ -150,7 +152,7 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
             width: widthsDebounced[e] || 100,
             renderCell: (params) => {
                 const { value } = params;
-                return value ? react_1.default.createElement(ui_1.SanitizedHTML, { html: value }) : '';
+                return value ? react_1.default.createElement(SanitizedHTML_1.default, { html: value }) : '';
             },
         })),
         ...filteredMetadataKeys.map(e => ({
@@ -158,7 +160,7 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
             width: widthsDebounced[e] || 100,
             renderCell: (params) => {
                 const { value } = params;
-                return value ? react_1.default.createElement(ui_1.SanitizedHTML, { html: value }) : '';
+                return value ? react_1.default.createElement(SanitizedHTML_1.default, { html: value }) : '';
             },
         })),
     ];
@@ -171,7 +173,7 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
                 callback();
                 setInfo(undefined);
             }, open: !!info, onClose: () => setInfo(undefined) })) : null,
-        react_1.default.createElement(FacetedHeader_1.default, { setHideSparse: setHideSparse, setFilterText: setFilterText, setUseShoppingCart: setUseShoppingCart, hideSparse: hideSparse, filterText: filterText, useShoppingCart: useShoppingCart, model: model }),
+        react_1.default.createElement(FacetedHeader_1.default, { setHideSparse: setHideSparse, setShowOptions: setShowOptions, setFilterText: setFilterText, setUseShoppingCart: setUseShoppingCart, hideSparse: hideSparse, showOptions: showOptions, filterText: filterText, useShoppingCart: useShoppingCart, model: model }),
         react_1.default.createElement("div", { ref: ref, style: {
                 display: 'flex',
                 overflow: 'hidden',
@@ -186,7 +188,7 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
                         entry[0],
                         newWidths[idx],
                     ]))), scrollLeft: scrollLeft }),
-                react_1.default.createElement(x_data_grid_1.DataGrid, { rows: rows.filter(row => arrFilters.every(([key, val]) => val.includes(row[key]))), columnVisibilityModel: visible, onColumnVisibilityModelChange: newModel => setVisible(newModel), headerHeight: 35, checkboxSelection: true, disableSelectionOnClick: true, keepNonExistentRowsSelected: true, onSelectionModelChange: userSelectedIds => {
+                react_1.default.createElement(x_data_grid_1.DataGrid, { rows: rows.filter(row => arrFilters.every(([key, val]) => val.includes(row[key]))), columnVisibilityModel: visible, onColumnVisibilityModelChange: newModel => setVisible(newModel), columnHeaderHeight: 35, checkboxSelection: true, disableRowSelectionOnClick: true, keepNonExistentRowsSelected: true, onRowSelectionModelChange: userSelectedIds => {
                         if (!useShoppingCart) {
                             const a1 = shownTrackIds;
                             const a2 = userSelectedIds;
@@ -203,7 +205,9 @@ exports.default = (0, mobx_react_1.observer)(function FacetedSelector({ model, }
                             const tracks = userSelectedIds.map(id => (0, mobx_state_tree_1.resolveIdentifier)(schema, root, id));
                             model.setSelection(tracks);
                         }
-                    }, selectionModel: useShoppingCart ? selection.map(s => s.trackId) : shownTrackIds, columns: columns, rowHeight: 25 })),
+                    }, rowSelectionModel: useShoppingCart ? selection.map(s => s.trackId) : shownTrackIds, slots: { toolbar: showOptions ? x_data_grid_1.GridToolbar : null }, slotProps: {
+                        toolbar: { printOptions: { disableToolbarButton: true } },
+                    }, columns: columns, rowHeight: 25 })),
             react_1.default.createElement(ui_1.ResizeHandle, { vertical: true, onDrag: dist => setPanelWidth(panelWidth - dist), style: { background: 'grey', width: 5 } }),
             react_1.default.createElement("div", { style: { width: panelWidth, overflowY: 'auto', overflowX: 'hidden' } },
                 react_1.default.createElement(FacetFilters_1.default, { width: panelWidth - 10, rows: rows, columns: columns, dispatch: dispatch, filters: filters })))));