@jbrowse/plugin-data-management 2.2.1 → 2.3.0

package/esm/AddTrackWidget/components/ConfirmTrack.js.map

@@ -1 +1 @@
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package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map

@@ -1 +1 @@
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package/esm/AddTrackWidget/components/TextIndexingConfig.d.ts

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare const TextIndexingConfig: ({ model }: {
+    model: AddTrackModel;
+}) => JSX.Element;
+export default TextIndexingConfig;

package/esm/AddTrackWidget/components/TextIndexingConfig.js

@@ -0,0 +1,81 @@
+import React, { useEffect, useState } from 'react';
+import { Card, CardContent, IconButton, InputLabel, InputAdornment, List, ListItem, Paper, TextField, } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { observer } from 'mobx-react';
+// icons
+import DeleteIcon from '@mui/icons-material/Delete';
+import AddIcon from '@mui/icons-material/Add';
+const useStyles = makeStyles()(theme => ({
+    paper: {
+        display: 'flex',
+        flexDirection: 'column',
+        padding: theme.spacing(1),
+    },
+    card: {
+        marginTop: theme.spacing(1),
+    },
+}));
+const TextIndexingConfig = observer(({ model }) => {
+    const { classes } = useStyles();
+    const [value1, setValue1] = useState('');
+    const [value2, setValue2] = useState('');
+    const [attributes, setAttributes] = useState(['Name', 'ID']);
+    const [exclude, setExclude] = useState(['CDS', 'exon']);
+    const sections = [
+        {
+            label: 'Indexing attributes',
+            values: attributes,
+        },
+        {
+            label: 'Feature types to exclude',
+            values: exclude,
+        },
+    ];
+    useEffect(() => {
+        model.setTextIndexingConf({ attributes, exclude });
+    }, [model, attributes, exclude]);
+    return (React.createElement(Paper, { className: classes.paper },
+        React.createElement(InputLabel, null, "Indexing configuration"),
+        sections.map((section, index) => (React.createElement(Card, { raised: true, key: section.label, className: classes.card },
+            React.createElement(CardContent, null,
+                React.createElement(InputLabel, null, section.label),
+                React.createElement(List, { disablePadding: true },
+                    section.values.map((val, idx) => (React.createElement(ListItem, { key: idx, disableGutters: true },
+                        React.createElement(TextField, { value: val, InputProps: {
+                                endAdornment: (React.createElement(InputAdornment, { position: "end" },
+                                    React.createElement(IconButton, { color: "secondary", onClick: () => {
+                                            const newAttr = section.values.filter((a, i) => {
+                                                return i !== idx;
+                                            });
+                                            index === 0
+                                                ? setAttributes(newAttr)
+                                                : setExclude(newAttr);
+                                        } },
+                                        React.createElement(DeleteIcon, null)))),
+                            } })))),
+                    React.createElement(ListItem, { disableGutters: true },
+                        React.createElement(TextField, { value: index === 0 ? value1 : value2, placeholder: "add new", onChange: event => {
+                                index === 0
+                                    ? setValue1(event.target.value)
+                                    : setValue2(event.target.value);
+                            }, InputProps: {
+                                endAdornment: (React.createElement(InputAdornment, { position: "end" },
+                                    React.createElement(IconButton, { onClick: () => {
+                                            if (index === 0) {
+                                                const newAttr = attributes;
+                                                newAttr.push(value1);
+                                                setAttributes(newAttr);
+                                                setValue1('');
+                                            }
+                                            else {
+                                                const newFeat = exclude;
+                                                newFeat.push(value2);
+                                                setExclude(newFeat);
+                                                setValue2('');
+                                            }
+                                        }, disabled: index === 0 ? value1 === '' : value2 === '', color: "secondary", "data-testid": `stringArrayAdd-Feat` },
+                                        React.createElement(AddIcon, null)))),
+                            } })))))))));
+});
+export default TextIndexingConfig;
+//# sourceMappingURL=TextIndexingConfig.js.map

package/esm/AddTrackWidget/components/TextIndexingConfig.js.map

@@ -0,0 +1 @@
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package/esm/AddTrackWidget/components/TrackAdapterSelector.d.ts

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare const TrackAdapterSelector: ({ model }: {
+    model: AddTrackModel;
+}) => JSX.Element;
+export default TrackAdapterSelector;

package/esm/AddTrackWidget/components/TrackAdapterSelector.js

@@ -0,0 +1,45 @@
+import React from 'react';
+import { ListSubheader, MenuItem, TextField } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { getEnv } from '@jbrowse/core/util';
+import { observer } from 'mobx-react';
+const useStyles = makeStyles()(theme => ({
+    spacing: {
+        marginBottom: theme.spacing(3),
+    },
+}));
+// collate adapters into a map with
+// key: category
+// value: array of adapters with that category
+function categorizeAdapters(adaptersList) {
+    const map = {};
+    adaptersList.forEach(adapter => {
+        var _a;
+        const key = ((_a = adapter.adapterMetadata) === null || _a === void 0 ? void 0 : _a.category) || 'Default';
+        if (!map[key]) {
+            map[key] = [];
+        }
+        map[key].push(adapter);
+    });
+    return map;
+}
+const TrackAdapterSelector = observer(({ model }) => {
+    const { classes } = useStyles();
+    const { trackAdapter } = model;
+    const { pluginManager } = getEnv(model);
+    return (React.createElement(TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "Adapter type", variant: "outlined", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: event => model.setAdapterHint(event.target.value), SelectProps: {
+            // @ts-ignore
+            SelectDisplayProps: { 'data-testid': 'adapterTypeSelect' },
+        } }, Object.entries(categorizeAdapters(pluginManager
+        .getAdapterElements()
+        .filter(e => { var _a; return !((_a = e.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI); }))).map(([key, val]) => {
+        // returning array avoids needing to use a react fragment which
+        // Select/TextField sub-elements disagree with
+        return [
+            React.createElement(ListSubheader, null, key),
+            val.map(elt => (React.createElement(MenuItem, { key: elt.name, value: elt.name }, elt.displayName))),
+        ];
+    })));
+});
+export default TrackAdapterSelector;
+//# sourceMappingURL=TrackAdapterSelector.js.map

package/esm/AddTrackWidget/components/TrackAdapterSelector.js.map

@@ -0,0 +1 @@
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package/esm/AddTrackWidget/components/TrackTypeSelector.d.ts

@@ -0,0 +1,6 @@
+/// <reference types="react" />
+import { AddTrackModel } from '../model';
+declare const TrackTypeSelector: ({ model }: {
+    model: AddTrackModel;
+}) => JSX.Element;
+export default TrackTypeSelector;

package/esm/AddTrackWidget/components/TrackTypeSelector.js

@@ -0,0 +1,22 @@
+import React from 'react';
+import { MenuItem, TextField } from '@mui/material';
+import { getEnv } from '@jbrowse/core/util';
+import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
+const useStyles = makeStyles()(theme => ({
+    spacing: {
+        marginBottom: theme.spacing(3),
+    },
+}));
+const TrackTypeSelector = observer(({ model }) => {
+    const { classes } = useStyles();
+    const { pluginManager } = getEnv(model);
+    const { trackType } = model;
+    const trackTypes = pluginManager.getTrackElements();
+    return (React.createElement(TextField, { className: classes.spacing, value: trackType, variant: "outlined", label: "Track type", helperText: "Select track type", select: true, fullWidth: true, onChange: event => model.setTrackType(event.target.value), SelectProps: {
+            // @ts-ignore
+            SelectDisplayProps: { 'data-testid': 'trackTypeSelect' },
+        } }, trackTypes.map(({ name, displayName }) => (React.createElement(MenuItem, { key: name, value: name }, displayName)))));
+});
+export default TrackTypeSelector;
+//# sourceMappingURL=TrackTypeSelector.js.map

package/esm/AddTrackWidget/components/TrackTypeSelector.js.map

@@ -0,0 +1 @@
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package/esm/AssemblyManager/AssemblyAddForm.js

@@ -1,34 +1,11 @@
 import React, { useState } from 'react';
 import { observer } from 'mobx-react';
-import FileSelector from '@jbrowse/core/ui/FileSelector';
 import { Button, Grid, MenuItem, Paper, TextField } from '@mui/material';
-import { makeStyles } from 'tss-react/mui';
+import { FileSelector } from '@jbrowse/core/ui';
+// icons
 import AddIcon from '@mui/icons-material/Add';
-const useStyles = makeStyles()(theme => ({
-    root: {
-        flexGrow: 1,
-        overflow: 'hidden',
-        padding: theme.spacing(0, 3),
-    },
-    paper: {
-        margin: `${theme.spacing(1)}px auto`,
-        padding: theme.spacing(2),
-    },
-    createButton: {
-        marginTop: '1em',
-        justifyContent: 'center',
-    },
-    paperContent: {
-        flex: 'auto',
-        margin: `${theme.spacing(1)}px auto`,
-        padding: theme.spacing(1),
-        overflow: 'auto',
-    },
-}));
-const AdapterSelector = observer(({ adapterSelection, setAdapterSelection, adapterTypes, }) => {
-    return (React.createElement(TextField, { value: adapterSelection, label: "Type", select: true, helperText: "Type of adapter to use", fullWidth: true, onChange: event => {
-            setAdapterSelection(event.target.value);
-        } }, adapterTypes.map(str => (React.createElement(MenuItem, { key: str, value: str }, str)))));
+const AdapterSelector = observer(function ({ adapterSelection, setAdapterSelection, adapterTypes, }) {
+    return (React.createElement(TextField, { value: adapterSelection, label: "Type", select: true, helperText: "Type of adapter to use", fullWidth: true, onChange: event => setAdapterSelection(event.target.value) }, adapterTypes.map(str => (React.createElement(MenuItem, { key: str, value: str }, str)))));
 });
 const AdapterInput = observer(({ adapterSelection, fastaLocation, setFastaLocation, faiLocation, setFaiLocation, gziLocation, setGziLocation, twoBitLocation, setTwoBitLocation, chromSizesLocation, setChromSizesLocation, }) => {
     if (adapterSelection === 'IndexedFastaAdapter' ||
@@ -51,8 +28,7 @@ const AdapterInput = observer(({ adapterSelection, fastaLocation, setFastaLocati
     return null;
 });
 const blank = { uri: '' };
-const AssemblyAddForm = observer(({ rootModel, setFormOpen, }) => {
-    const { classes } = useStyles();
+const AssemblyAddForm = observer(function ({ rootModel, setFormOpen, }) {
     const adapterTypes = [
         'IndexedFastaAdapter',
         'BgzipFastaAdapter',
@@ -117,16 +93,13 @@ const AssemblyAddForm = observer(({ rootModel, setFormOpen, }) => {
             rootModel.session.notify(`Successfully added ${assemblyName} assembly to JBrowse 2`, 'success');
         }
     }
-    return (React.createElement("div", { className: classes.root },
-        React.createElement(Paper, { className: classes.paper },
+    return (React.createElement("div", null,
+        React.createElement(Paper, null,
             React.createElement(TextField, { id: "assembly-name", inputProps: { 'data-testid': 'assembly-name' }, label: "Assembly name", helperText: "The assembly name e.g. hg38", variant: "outlined", value: assemblyName, onChange: event => setAssemblyName(event.target.value) }),
             React.createElement(TextField, { id: "assembly-name", inputProps: { 'data-testid': 'assembly-display-name' }, label: "Assembly display name", helperText: 'A human readable display name for the assembly e.g. "Homo sapiens (hg38)"', variant: "outlined", value: assemblyDisplayName, onChange: event => setAssemblyDisplayName(event.target.value) }),
             React.createElement(AdapterSelector, { adapterSelection: adapterSelection, setAdapterSelection: setAdapterSelection, adapterTypes: adapterTypes }),
-            React.createElement("div", { className: classes.paperContent },
-                React.createElement(AdapterInput, { adapterSelection: adapterSelection, fastaLocation: fastaLocation, setFastaLocation: setFastaLocation, faiLocation: faiLocation, setFaiLocation: setFaiLocation, gziLocation: gziLocation, setGziLocation: setGziLocation, twoBitLocation: twoBitLocation, setTwoBitLocation: setTwoBitLocation, chromSizesLocation: chromSizesLocation, setChromSizesLocation: setChromSizesLocation }))),
-        React.createElement(Grid, { container: true, className: classes.createButton },
-            React.createElement(Grid, { item: true },
-                React.createElement(Button, { variant: "contained", color: "secondary", startIcon: React.createElement(AddIcon, null), onClick: createAssembly }, "Create new assembly")))));
+            React.createElement(AdapterInput, { adapterSelection: adapterSelection, fastaLocation: fastaLocation, setFastaLocation: setFastaLocation, faiLocation: faiLocation, setFaiLocation: setFaiLocation, gziLocation: gziLocation, setGziLocation: setGziLocation, twoBitLocation: twoBitLocation, setTwoBitLocation: setTwoBitLocation, chromSizesLocation: chromSizesLocation, setChromSizesLocation: setChromSizesLocation })),
+        React.createElement(Button, { variant: "contained", color: "secondary", startIcon: React.createElement(AddIcon, null), onClick: createAssembly }, "Create new assembly")));
 });
 export default AssemblyAddForm;
 //# sourceMappingURL=AssemblyAddForm.js.map

package/esm/AssemblyManager/AssemblyAddForm.js.map

@@ -1 +1 @@
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package/esm/AssemblyManager/AssemblyEditor.js

@@ -2,7 +2,8 @@ import React from 'react';
 import { observer } from 'mobx-react';
 import { ConfigurationEditor } from '@jbrowse/plugin-config';
 const AssemblyEditor = observer(({ assembly, }) => {
-    return React.createElement(ConfigurationEditor, { model: { target: assembly } });
+    return (React.createElement("div", { style: { maxHeight: 600, overflow: 'auto' } },
+        React.createElement(ConfigurationEditor, { model: { target: assembly } })));
 });
 export default AssemblyEditor;
 //# sourceMappingURL=AssemblyEditor.js.map

package/esm/AssemblyManager/AssemblyEditor.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AssemblyEditor.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyEditor.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,mBAAmB,EAAE,MAAM,wBAAwB,CAAA;AAE5D,MAAM,cAAc,GAAG,QAAQ,CAC7B,CAAC,EACC,QAAQ,GAIT,EAAE,EAAE;IACH,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,SAAS,EAAE,GAAG,EAAE,QAAQ,EAAE,MAAM,EAAE;QAC9C,oBAAC,mBAAmB,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAI,CAChD,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,cAAc,CAAA"}

package/esm/AssemblyManager/AssemblyManager.js

@@ -1,69 +1,29 @@
 import React, { useState } from 'react';
 import { observer } from 'mobx-react';
-import { makeStyles } from 'tss-react/mui';
-import { Button, Dialog, DialogActions, DialogContent, DialogTitle, IconButton, } from '@mui/material';
-import ArrowBackIosIcon from '@mui/icons-material/ArrowBackIos';
-import CloseIcon from '@mui/icons-material/Close';
+import { Button, DialogActions, DialogContent } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
+// icons
 import AddIcon from '@mui/icons-material/Add';
+// locals
 import AssemblyTable from './AssemblyTable';
 import AssemblyAddForm from './AssemblyAddForm';
 import AssemblyEditor from './AssemblyEditor';
-const useStyles = makeStyles()(theme => ({
-    titleBox: {
-        color: '#fff',
-        backgroundColor: theme.palette.primary.main,
-        textAlign: 'center',
-    },
-    dialogContent: {
-        width: '100%',
-    },
-    backButton: {
-        color: '#fff',
-        position: 'absolute',
-        left: theme.spacing(4),
-        top: theme.spacing(4),
-    },
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
-const AssemblyManager = observer(({ rootModel, onClose, }) => {
-    const { classes } = useStyles();
+const AssemblyManager = observer(function ({ rootModel, onClose, }) {
     const [isFormOpen, setFormOpen] = useState(false);
     const [isAssemblyBeingEdited, setIsAssemblyBeingEdited] = useState(false);
     const [assemblyBeingEdited, setAssemblyBeingEdited] = useState();
     const showAssemblyTable = !isFormOpen && !isAssemblyBeingEdited;
-    return (React.createElement(Dialog, { open: true, onClose: () => onClose(false) },
-        React.createElement(DialogTitle, { className: classes.titleBox },
-            showAssemblyTable ? 'Assembly manager' : null,
-            isFormOpen ? (React.createElement(React.Fragment, null,
-                React.createElement(IconButton, { "aria-label": "back", className: classes.backButton, onClick: () => setFormOpen(false) },
-                    React.createElement(ArrowBackIosIcon, null)),
-                "Add new assembly")) : null,
-            isAssemblyBeingEdited ? (React.createElement(React.Fragment, null,
-                React.createElement(IconButton, { "aria-label": "back", className: classes.backButton, onClick: () => setIsAssemblyBeingEdited(false) },
-                    React.createElement(ArrowBackIosIcon, null)),
-                returnAssemblyName(assemblyBeingEdited))) : null,
-            React.createElement(IconButton, { "aria-label": "close", className: classes.closeButton, onClick: () => onClose(false) },
-                React.createElement(CloseIcon, null))),
+    return (React.createElement(Dialog, { open: true, onClose: () => onClose(false), title: "Assembly manager" },
         React.createElement(DialogContent, null,
-            React.createElement("div", { className: classes.dialogContent },
-                showAssemblyTable ? (React.createElement(AssemblyTable, { rootModel: rootModel, setIsAssemblyBeingEdited: setIsAssemblyBeingEdited, setAssemblyBeingEdited: setAssemblyBeingEdited })) : null,
-                isAssemblyBeingEdited ? (React.createElement(AssemblyEditor, { assembly: assemblyBeingEdited })) : null,
-                isFormOpen ? (React.createElement(AssemblyAddForm, { rootModel: rootModel, setFormOpen: setFormOpen })) : null)),
-        React.createElement(DialogActions, null, showAssemblyTable ? (React.createElement(React.Fragment, null,
-            React.createElement(Button, { color: "secondary", variant: "contained", onClick: () => onClose(false) }, "Close"),
-            React.createElement(Button, { variant: "contained", color: "secondary", startIcon: React.createElement(AddIcon, null), onClick: () => setFormOpen(true) }, "Add new assembly"))) : null)));
+            showAssemblyTable ? (React.createElement(AssemblyTable, { rootModel: rootModel, setIsAssemblyBeingEdited: setIsAssemblyBeingEdited, setAssemblyBeingEdited: setAssemblyBeingEdited })) : null,
+            isAssemblyBeingEdited ? (React.createElement(AssemblyEditor, { assembly: assemblyBeingEdited })) : null,
+            isFormOpen ? (React.createElement(AssemblyAddForm, { rootModel: rootModel, setFormOpen: setFormOpen })) : null),
+        React.createElement(DialogActions, null,
+            isFormOpen ? (React.createElement(Button, { variant: "contained", onClick: () => setFormOpen(false) }, "Back")) : null,
+            isAssemblyBeingEdited ? (React.createElement(Button, { variant: "contained", onClick: () => setIsAssemblyBeingEdited(false) }, "Back")) : null,
+            showAssemblyTable ? (React.createElement(React.Fragment, null,
+                React.createElement(Button, { color: "secondary", variant: "contained", onClick: () => onClose(false) }, "Close"),
+                React.createElement(Button, { variant: "contained", startIcon: React.createElement(AddIcon, null), onClick: () => setFormOpen(true) }, "Add new assembly"))) : null)));
 });
-// eslint-disable-next-line @typescript-eslint/no-explicit-any
-function returnAssemblyName(assembly) {
-    if (assembly !== undefined) {
-        return assembly.name;
-    }
-    return null;
-}
 export default AssemblyManager;
 //# sourceMappingURL=AssemblyManager.js.map

package/esm/AssemblyManager/AssemblyManager.js.map

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package/esm/AssemblyManager/AssemblyTable.js

@@ -1,62 +1,39 @@
 import React from 'react';
 import { observer } from 'mobx-react';
-import { IconButton, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Paper, Typography, } from '@mui/material';
-import { makeStyles } from 'tss-react/mui';
+import { IconButton, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Paper, } from '@mui/material';
+import { readConfObject, } from '@jbrowse/core/configuration';
 import CreateIcon from '@mui/icons-material/Create';
 import DeleteIcon from '@mui/icons-material/Delete';
-import { readConfObject, } from '@jbrowse/core/configuration';
-const useStyles = makeStyles()(() => ({
-    table: {
-        minWidth: 500,
-        minHeight: 150,
-    },
-    buttonCell: {
-        padding: 3,
-    },
-    button: {
-        display: 'inline-block',
-        padding: 3,
-        minHeight: 0,
-        minWidth: 0,
-    },
-}));
-const AssemblyTable = observer(({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }) => {
-    const { classes } = useStyles();
+const AssemblyTable = observer(function ({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }) {
     function removeAssembly(name) {
         rootModel.jbrowse.removeAssemblyConf(name);
     }
-    const rows = rootModel.jbrowse.assemblies.map(assembly => {
-        const name = readConfObject(assembly, 'name');
-        const displayName = readConfObject(assembly, 'displayName');
-        const aliases = readConfObject(assembly, 'aliases');
-        return (React.createElement(TableRow, { key: name },
-            React.createElement(TableCell, null, name),
-            React.createElement(TableCell, null, displayName),
-            React.createElement(TableCell, null, aliases ? aliases.toString() : ''),
-            React.createElement(TableCell, { className: classes.buttonCell },
-                React.createElement(IconButton, { "data-testid": `${name}-edit`, className: classes.button, onClick: () => {
-                        setIsAssemblyBeingEdited(true);
-                        setAssemblyBeingEdited(assembly);
-                    } },
-                    React.createElement(CreateIcon, { color: "primary" })),
-                React.createElement(IconButton, { "data-testid": `${name}-delete`, className: classes.button, onClick: () => {
-                        removeAssembly(name);
-                    } },
-                    React.createElement(DeleteIcon, { color: "error" })))));
-    });
+    const { assemblies } = rootModel.jbrowse;
     return (React.createElement(TableContainer, { component: Paper },
-        React.createElement(Table, { className: classes.table },
+        React.createElement(Table, null,
             React.createElement(TableHead, null,
                 React.createElement(TableRow, null,
+                    React.createElement(TableCell, null, "Name"),
+                    React.createElement(TableCell, null, "Display name"),
+                    React.createElement(TableCell, null, "Aliases"),
+                    React.createElement(TableCell, null, "Actions"))),
+            React.createElement(TableBody, null, assemblies.map(assembly => {
+                const name = readConfObject(assembly, 'name');
+                const displayName = readConfObject(assembly, 'displayName');
+                const aliases = readConfObject(assembly, 'aliases');
+                return (React.createElement(TableRow, { key: name },
+                    React.createElement(TableCell, null, name),
+                    React.createElement(TableCell, null, displayName),
+                    React.createElement(TableCell, null, aliases ? aliases.toString() : ''),
                     React.createElement(TableCell, null,
-                        React.createElement(Typography, { variant: "h5" }, "Name")),
-                    React.createElement(TableCell, null,
-                        React.createElement(Typography, { variant: "h5" }, "Display name")),
-                    React.createElement(TableCell, null,
-                        React.createElement(Typography, { variant: "h5" }, "Aliases")),
-                    React.createElement(TableCell, null,
-                        React.createElement(Typography, { variant: "h5" }, "Actions")))),
-            React.createElement(TableBody, null, rows))));
+                        React.createElement(IconButton, { "data-testid": `${name}-edit`, onClick: () => {
+                                setIsAssemblyBeingEdited(true);
+                                setAssemblyBeingEdited(assembly);
+                            } },
+                            React.createElement(CreateIcon, { color: "primary" })),
+                        React.createElement(IconButton, { "data-testid": `${name}-delete`, onClick: () => removeAssembly(name) },
+                            React.createElement(DeleteIcon, { color: "error" })))));
+            })))));
 });
 export default AssemblyTable;
 //# sourceMappingURL=AssemblyTable.js.map

package/esm/AssemblyManager/AssemblyTable.js.map

@@ -1 +1 @@
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package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js

@@ -1,13 +1,12 @@
 import React, { useCallback, useMemo, useState, useRef, useEffect } from 'react';
 import { Fab, Menu, MenuItem } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-// icons
-import AddIcon from '@mui/icons-material/Add';
-// other
-import AutoSizer from 'react-virtualized-auto-sizer';
 import { getSession, isSessionModelWithWidgets, isSessionModelWithConnections, isSessionWithAddTracks, } from '@jbrowse/core/util';
 import { observer } from 'mobx-react';
 import { VariableSizeTree } from 'react-vtree';
+import AutoSizer from 'react-virtualized-auto-sizer';
+// icons
+import AddIcon from '@mui/icons-material/Add';
 import Header from './Header';
 import Node from './Node';
 const useStyles = makeStyles()(theme => ({