@jbrowse/plugin-data-management 2.2.1 → 2.3.0

package/dist/AssemblyManager/AssemblyAddForm.js

@@ -28,59 +28,35 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const mobx_react_1 = require("mobx-react");
-const FileSelector_1 = __importDefault(require("@jbrowse/core/ui/FileSelector"));
 const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
+const ui_1 = require("@jbrowse/core/ui");
+// icons
 const Add_1 = __importDefault(require("@mui/icons-material/Add"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    root: {
-        flexGrow: 1,
-        overflow: 'hidden',
-        padding: theme.spacing(0, 3),
-    },
-    paper: {
-        margin: `${theme.spacing(1)}px auto`,
-        padding: theme.spacing(2),
-    },
-    createButton: {
-        marginTop: '1em',
-        justifyContent: 'center',
-    },
-    paperContent: {
-        flex: 'auto',
-        margin: `${theme.spacing(1)}px auto`,
-        padding: theme.spacing(1),
-        overflow: 'auto',
-    },
-}));
-const AdapterSelector = (0, mobx_react_1.observer)(({ adapterSelection, setAdapterSelection, adapterTypes, }) => {
-    return (react_1.default.createElement(material_1.TextField, { value: adapterSelection, label: "Type", select: true, helperText: "Type of adapter to use", fullWidth: true, onChange: event => {
-            setAdapterSelection(event.target.value);
-        } }, adapterTypes.map(str => (react_1.default.createElement(material_1.MenuItem, { key: str, value: str }, str)))));
+const AdapterSelector = (0, mobx_react_1.observer)(function ({ adapterSelection, setAdapterSelection, adapterTypes, }) {
+    return (react_1.default.createElement(material_1.TextField, { value: adapterSelection, label: "Type", select: true, helperText: "Type of adapter to use", fullWidth: true, onChange: event => setAdapterSelection(event.target.value) }, adapterTypes.map(str => (react_1.default.createElement(material_1.MenuItem, { key: str, value: str }, str)))));
 });
 const AdapterInput = (0, mobx_react_1.observer)(({ adapterSelection, fastaLocation, setFastaLocation, faiLocation, setFaiLocation, gziLocation, setGziLocation, twoBitLocation, setTwoBitLocation, chromSizesLocation, setChromSizesLocation, }) => {
     if (adapterSelection === 'IndexedFastaAdapter' ||
         adapterSelection === 'BgzipFastaAdapter') {
         return (react_1.default.createElement(material_1.Grid, { container: true, spacing: 2 },
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "fastaLocation", location: fastaLocation, setLocation: loc => setFastaLocation(loc) })),
+                react_1.default.createElement(ui_1.FileSelector, { name: "fastaLocation", location: fastaLocation, setLocation: loc => setFastaLocation(loc) })),
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "faiLocation", location: faiLocation, setLocation: loc => setFaiLocation(loc) })),
+                react_1.default.createElement(ui_1.FileSelector, { name: "faiLocation", location: faiLocation, setLocation: loc => setFaiLocation(loc) })),
             adapterSelection === 'BgzipFastaAdapter' ? (react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "gziLocation", location: gziLocation, setLocation: loc => setGziLocation(loc) }))) : null));
+                react_1.default.createElement(ui_1.FileSelector, { name: "gziLocation", location: gziLocation, setLocation: loc => setGziLocation(loc) }))) : null));
     }
     if (adapterSelection === 'TwoBitAdapter') {
         return (react_1.default.createElement(material_1.Grid, { container: true, spacing: 2 },
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "twoBitLocation", location: twoBitLocation, setLocation: loc => setTwoBitLocation(loc) })),
+                react_1.default.createElement(ui_1.FileSelector, { name: "twoBitLocation", location: twoBitLocation, setLocation: loc => setTwoBitLocation(loc) })),
             react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(FileSelector_1.default, { name: "chromSizesLocation (optional, can be added to speed up loading 2bit files with many contigs)", location: chromSizesLocation, setLocation: loc => setChromSizesLocation(loc) }))));
+                react_1.default.createElement(ui_1.FileSelector, { name: "chromSizesLocation (optional, can be added to speed up loading 2bit files with many contigs)", location: chromSizesLocation, setLocation: loc => setChromSizesLocation(loc) }))));
     }
     return null;
 });
 const blank = { uri: '' };
-const AssemblyAddForm = (0, mobx_react_1.observer)(({ rootModel, setFormOpen, }) => {
-    const { classes } = useStyles();
+const AssemblyAddForm = (0, mobx_react_1.observer)(function ({ rootModel, setFormOpen, }) {
     const adapterTypes = [
         'IndexedFastaAdapter',
         'BgzipFastaAdapter',
@@ -145,16 +121,13 @@ const AssemblyAddForm = (0, mobx_react_1.observer)(({ rootModel, setFormOpen, })
             rootModel.session.notify(`Successfully added ${assemblyName} assembly to JBrowse 2`, 'success');
         }
     }
-    return (react_1.default.createElement("div", { className: classes.root },
-        react_1.default.createElement(material_1.Paper, { className: classes.paper },
+    return (react_1.default.createElement("div", null,
+        react_1.default.createElement(material_1.Paper, null,
             react_1.default.createElement(material_1.TextField, { id: "assembly-name", inputProps: { 'data-testid': 'assembly-name' }, label: "Assembly name", helperText: "The assembly name e.g. hg38", variant: "outlined", value: assemblyName, onChange: event => setAssemblyName(event.target.value) }),
             react_1.default.createElement(material_1.TextField, { id: "assembly-name", inputProps: { 'data-testid': 'assembly-display-name' }, label: "Assembly display name", helperText: 'A human readable display name for the assembly e.g. "Homo sapiens (hg38)"', variant: "outlined", value: assemblyDisplayName, onChange: event => setAssemblyDisplayName(event.target.value) }),
             react_1.default.createElement(AdapterSelector, { adapterSelection: adapterSelection, setAdapterSelection: setAdapterSelection, adapterTypes: adapterTypes }),
-            react_1.default.createElement("div", { className: classes.paperContent },
-                react_1.default.createElement(AdapterInput, { adapterSelection: adapterSelection, fastaLocation: fastaLocation, setFastaLocation: setFastaLocation, faiLocation: faiLocation, setFaiLocation: setFaiLocation, gziLocation: gziLocation, setGziLocation: setGziLocation, twoBitLocation: twoBitLocation, setTwoBitLocation: setTwoBitLocation, chromSizesLocation: chromSizesLocation, setChromSizesLocation: setChromSizesLocation }))),
-        react_1.default.createElement(material_1.Grid, { container: true, className: classes.createButton },
-            react_1.default.createElement(material_1.Grid, { item: true },
-                react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", startIcon: react_1.default.createElement(Add_1.default, null), onClick: createAssembly }, "Create new assembly")))));
+            react_1.default.createElement(AdapterInput, { adapterSelection: adapterSelection, fastaLocation: fastaLocation, setFastaLocation: setFastaLocation, faiLocation: faiLocation, setFaiLocation: setFaiLocation, gziLocation: gziLocation, setGziLocation: setGziLocation, twoBitLocation: twoBitLocation, setTwoBitLocation: setTwoBitLocation, chromSizesLocation: chromSizesLocation, setChromSizesLocation: setChromSizesLocation })),
+        react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", startIcon: react_1.default.createElement(Add_1.default, null), onClick: createAssembly }, "Create new assembly")));
 });
 exports.default = AssemblyAddForm;
 //# sourceMappingURL=AssemblyAddForm.js.map

package/dist/AssemblyManager/AssemblyAddForm.js.map

@@ -1 +1 @@
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package/dist/AssemblyManager/AssemblyEditor.js

@@ -7,7 +7,8 @@ const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 const plugin_config_1 = require("@jbrowse/plugin-config");
 const AssemblyEditor = (0, mobx_react_1.observer)(({ assembly, }) => {
-    return react_1.default.createElement(plugin_config_1.ConfigurationEditor, { model: { target: assembly } });
+    return (react_1.default.createElement("div", { style: { maxHeight: 600, overflow: 'auto' } },
+        react_1.default.createElement(plugin_config_1.ConfigurationEditor, { model: { target: assembly } })));
 });
 exports.default = AssemblyEditor;
 //# sourceMappingURL=AssemblyEditor.js.map

package/dist/AssemblyManager/AssemblyEditor.js.map

@@ -1 +1 @@
-{"version":3,"file":"AssemblyEditor.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyEditor.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,0DAA4D;AAE5D,MAAM,cAAc,GAAG,IAAA,qBAAQ,EAC7B,CAAC,EACC,QAAQ,GAIT,EAAE,EAAE;IACH,OAAO,8BAAC,mCAAmB,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAI,CAAA;AAC7D,CAAC,CACF,CAAA;AAED,kBAAe,cAAc,CAAA"}
+{"version":3,"file":"AssemblyEditor.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyEditor.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,0DAA4D;AAE5D,MAAM,cAAc,GAAG,IAAA,qBAAQ,EAC7B,CAAC,EACC,QAAQ,GAIT,EAAE,EAAE;IACH,OAAO,CACL,uCAAK,KAAK,EAAE,EAAE,SAAS,EAAE,GAAG,EAAE,QAAQ,EAAE,MAAM,EAAE;QAC9C,8BAAC,mCAAmB,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,QAAQ,EAAE,GAAI,CAChD,CACP,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,cAAc,CAAA"}

package/dist/AssemblyManager/AssemblyManager.js

@@ -28,70 +28,30 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
 const material_1 = require("@mui/material");
-const ArrowBackIos_1 = __importDefault(require("@mui/icons-material/ArrowBackIos"));
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const ui_1 = require("@jbrowse/core/ui");
+// icons
 const Add_1 = __importDefault(require("@mui/icons-material/Add"));
+// locals
 const AssemblyTable_1 = __importDefault(require("./AssemblyTable"));
 const AssemblyAddForm_1 = __importDefault(require("./AssemblyAddForm"));
 const AssemblyEditor_1 = __importDefault(require("./AssemblyEditor"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    titleBox: {
-        color: '#fff',
-        backgroundColor: theme.palette.primary.main,
-        textAlign: 'center',
-    },
-    dialogContent: {
-        width: '100%',
-    },
-    backButton: {
-        color: '#fff',
-        position: 'absolute',
-        left: theme.spacing(4),
-        top: theme.spacing(4),
-    },
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
-const AssemblyManager = (0, mobx_react_1.observer)(({ rootModel, onClose, }) => {
-    const { classes } = useStyles();
+const AssemblyManager = (0, mobx_react_1.observer)(function ({ rootModel, onClose, }) {
     const [isFormOpen, setFormOpen] = (0, react_1.useState)(false);
     const [isAssemblyBeingEdited, setIsAssemblyBeingEdited] = (0, react_1.useState)(false);
     const [assemblyBeingEdited, setAssemblyBeingEdited] = (0, react_1.useState)();
     const showAssemblyTable = !isFormOpen && !isAssemblyBeingEdited;
-    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: () => onClose(false) },
-        react_1.default.createElement(material_1.DialogTitle, { className: classes.titleBox },
-            showAssemblyTable ? 'Assembly manager' : null,
-            isFormOpen ? (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement(material_1.IconButton, { "aria-label": "back", className: classes.backButton, onClick: () => setFormOpen(false) },
-                    react_1.default.createElement(ArrowBackIos_1.default, null)),
-                "Add new assembly")) : null,
-            isAssemblyBeingEdited ? (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement(material_1.IconButton, { "aria-label": "back", className: classes.backButton, onClick: () => setIsAssemblyBeingEdited(false) },
-                    react_1.default.createElement(ArrowBackIos_1.default, null)),
-                returnAssemblyName(assemblyBeingEdited))) : null,
-            react_1.default.createElement(material_1.IconButton, { "aria-label": "close", className: classes.closeButton, onClick: () => onClose(false) },
-                react_1.default.createElement(Close_1.default, null))),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: () => onClose(false), title: "Assembly manager" },
         react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement("div", { className: classes.dialogContent },
-                showAssemblyTable ? (react_1.default.createElement(AssemblyTable_1.default, { rootModel: rootModel, setIsAssemblyBeingEdited: setIsAssemblyBeingEdited, setAssemblyBeingEdited: setAssemblyBeingEdited })) : null,
-                isAssemblyBeingEdited ? (react_1.default.createElement(AssemblyEditor_1.default, { assembly: assemblyBeingEdited })) : null,
-                isFormOpen ? (react_1.default.createElement(AssemblyAddForm_1.default, { rootModel: rootModel, setFormOpen: setFormOpen })) : null)),
-        react_1.default.createElement(material_1.DialogActions, null, showAssemblyTable ? (react_1.default.createElement(react_1.default.Fragment, null,
-            react_1.default.createElement(material_1.Button, { color: "secondary", variant: "contained", onClick: () => onClose(false) }, "Close"),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", startIcon: react_1.default.createElement(Add_1.default, null), onClick: () => setFormOpen(true) }, "Add new assembly"))) : null)));
+            showAssemblyTable ? (react_1.default.createElement(AssemblyTable_1.default, { rootModel: rootModel, setIsAssemblyBeingEdited: setIsAssemblyBeingEdited, setAssemblyBeingEdited: setAssemblyBeingEdited })) : null,
+            isAssemblyBeingEdited ? (react_1.default.createElement(AssemblyEditor_1.default, { assembly: assemblyBeingEdited })) : null,
+            isFormOpen ? (react_1.default.createElement(AssemblyAddForm_1.default, { rootModel: rootModel, setFormOpen: setFormOpen })) : null),
+        react_1.default.createElement(material_1.DialogActions, null,
+            isFormOpen ? (react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => setFormOpen(false) }, "Back")) : null,
+            isAssemblyBeingEdited ? (react_1.default.createElement(material_1.Button, { variant: "contained", onClick: () => setIsAssemblyBeingEdited(false) }, "Back")) : null,
+            showAssemblyTable ? (react_1.default.createElement(react_1.default.Fragment, null,
+                react_1.default.createElement(material_1.Button, { color: "secondary", variant: "contained", onClick: () => onClose(false) }, "Close"),
+                react_1.default.createElement(material_1.Button, { variant: "contained", startIcon: react_1.default.createElement(Add_1.default, null), onClick: () => setFormOpen(true) }, "Add new assembly"))) : null)));
 });
-// eslint-disable-next-line @typescript-eslint/no-explicit-any
-function returnAssemblyName(assembly) {
-    if (assembly !== undefined) {
-        return assembly.name;
-    }
-    return null;
-}
 exports.default = AssemblyManager;
 //# sourceMappingURL=AssemblyManager.js.map

package/dist/AssemblyManager/AssemblyManager.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AssemblyManager.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyManager.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AAErC,4CAAoE;AACpE,yCAAyC;AAEzC,QAAQ;AACR,kEAA6C;AAE7C,SAAS;AACT,oEAA2C;AAC3C,wEAA+C;AAC/C,sEAA6C;AAE7C,MAAM,eAAe,GAAG,IAAA,qBAAQ,EAAC,UAAU,EACzC,SAAS,EACT,OAAO,GAKR;IACC,MAAM,CAAC,UAAU,EAAE,WAAW,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACjD,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACzE,MAAM,CAAC,mBAAmB,EAAE,sBAAsB,CAAC,GACjD,IAAA,gBAAQ,GAAyB,CAAA;IAEnC,MAAM,iBAAiB,GAAG,CAAC,UAAU,IAAI,CAAC,qBAAqB,CAAA;IAE/D,OAAO,CACL,8BAAC,WAAM,IAAC,IAAI,QAAC,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,KAAK,EAAC,kBAAkB;QAClE,8BAAC,wBAAa;YACX,iBAAiB,CAAC,CAAC,CAAC,CACnB,8BAAC,uBAAa,IACZ,SAAS,EAAE,SAAS,EACpB,wBAAwB,EAAE,wBAAwB,EAClD,sBAAsB,EAAE,sBAAsB,GAC9C,CACH,CAAC,CAAC,CAAC,IAAI;YACP,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,wBAAc,IAAC,QAAQ,EAAE,mBAAmB,GAAI,CAClD,CAAC,CAAC,CAAC,IAAI;YACP,UAAU,CAAC,CAAC,CAAC,CACZ,8BAAC,yBAAe,IAAC,SAAS,EAAE,SAAS,EAAE,WAAW,EAAE,WAAW,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CACM;QAChB,8BAAC,wBAAa;YACX,UAAU,CAAC,CAAC,CAAC,CACZ,8BAAC,iBAAM,IAAC,OAAO,EAAC,WAAW,EAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,KAAK,CAAC,WAEpD,CACV,CAAC,CAAC,CAAC,IAAI;YACP,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,KAAK,CAAC,WAGvC,CACV,CAAC,CAAC,CAAC,IAAI;YACP,iBAAiB,CAAC,CAAC,CAAC,CACnB;gBACE,8BAAC,iBAAM,IACL,KAAK,EAAC,WAAW,EACjB,OAAO,EAAC,WAAW,EACnB,OAAO,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC,YAGtB;gBACT,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,SAAS,EAAE,8BAAC,aAAO,OAAG,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,CAAC,IAAI,CAAC,uBAGzB,CACR,CACJ,CAAC,CAAC,CAAC,IAAI,CACM,CACT,CACV,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,kBAAe,eAAe,CAAA"}

package/dist/AssemblyManager/AssemblyTable.js

@@ -6,62 +6,39 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
+const configuration_1 = require("@jbrowse/core/configuration");
 const Create_1 = __importDefault(require("@mui/icons-material/Create"));
 const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
-const configuration_1 = require("@jbrowse/core/configuration");
-const useStyles = (0, mui_1.makeStyles)()(() => ({
-    table: {
-        minWidth: 500,
-        minHeight: 150,
-    },
-    buttonCell: {
-        padding: 3,
-    },
-    button: {
-        display: 'inline-block',
-        padding: 3,
-        minHeight: 0,
-        minWidth: 0,
-    },
-}));
-const AssemblyTable = (0, mobx_react_1.observer)(({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }) => {
-    const { classes } = useStyles();
+const AssemblyTable = (0, mobx_react_1.observer)(function ({ rootModel, setIsAssemblyBeingEdited, setAssemblyBeingEdited, }) {
     function removeAssembly(name) {
         rootModel.jbrowse.removeAssemblyConf(name);
     }
-    const rows = rootModel.jbrowse.assemblies.map(assembly => {
-        const name = (0, configuration_1.readConfObject)(assembly, 'name');
-        const displayName = (0, configuration_1.readConfObject)(assembly, 'displayName');
-        const aliases = (0, configuration_1.readConfObject)(assembly, 'aliases');
-        return (react_1.default.createElement(material_1.TableRow, { key: name },
-            react_1.default.createElement(material_1.TableCell, null, name),
-            react_1.default.createElement(material_1.TableCell, null, displayName),
-            react_1.default.createElement(material_1.TableCell, null, aliases ? aliases.toString() : ''),
-            react_1.default.createElement(material_1.TableCell, { className: classes.buttonCell },
-                react_1.default.createElement(material_1.IconButton, { "data-testid": `${name}-edit`, className: classes.button, onClick: () => {
-                        setIsAssemblyBeingEdited(true);
-                        setAssemblyBeingEdited(assembly);
-                    } },
-                    react_1.default.createElement(Create_1.default, { color: "primary" })),
-                react_1.default.createElement(material_1.IconButton, { "data-testid": `${name}-delete`, className: classes.button, onClick: () => {
-                        removeAssembly(name);
-                    } },
-                    react_1.default.createElement(Delete_1.default, { color: "error" })))));
-    });
+    const { assemblies } = rootModel.jbrowse;
     return (react_1.default.createElement(material_1.TableContainer, { component: material_1.Paper },
-        react_1.default.createElement(material_1.Table, { className: classes.table },
+        react_1.default.createElement(material_1.Table, null,
             react_1.default.createElement(material_1.TableHead, null,
                 react_1.default.createElement(material_1.TableRow, null,
+                    react_1.default.createElement(material_1.TableCell, null, "Name"),
+                    react_1.default.createElement(material_1.TableCell, null, "Display name"),
+                    react_1.default.createElement(material_1.TableCell, null, "Aliases"),
+                    react_1.default.createElement(material_1.TableCell, null, "Actions"))),
+            react_1.default.createElement(material_1.TableBody, null, assemblies.map(assembly => {
+                const name = (0, configuration_1.readConfObject)(assembly, 'name');
+                const displayName = (0, configuration_1.readConfObject)(assembly, 'displayName');
+                const aliases = (0, configuration_1.readConfObject)(assembly, 'aliases');
+                return (react_1.default.createElement(material_1.TableRow, { key: name },
+                    react_1.default.createElement(material_1.TableCell, null, name),
+                    react_1.default.createElement(material_1.TableCell, null, displayName),
+                    react_1.default.createElement(material_1.TableCell, null, aliases ? aliases.toString() : ''),
                     react_1.default.createElement(material_1.TableCell, null,
-                        react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Name")),
-                    react_1.default.createElement(material_1.TableCell, null,
-                        react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Display name")),
-                    react_1.default.createElement(material_1.TableCell, null,
-                        react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Aliases")),
-                    react_1.default.createElement(material_1.TableCell, null,
-                        react_1.default.createElement(material_1.Typography, { variant: "h5" }, "Actions")))),
-            react_1.default.createElement(material_1.TableBody, null, rows))));
+                        react_1.default.createElement(material_1.IconButton, { "data-testid": `${name}-edit`, onClick: () => {
+                                setIsAssemblyBeingEdited(true);
+                                setAssemblyBeingEdited(assembly);
+                            } },
+                            react_1.default.createElement(Create_1.default, { color: "primary" })),
+                        react_1.default.createElement(material_1.IconButton, { "data-testid": `${name}-delete`, onClick: () => removeAssembly(name) },
+                            react_1.default.createElement(Delete_1.default, { color: "error" })))));
+            })))));
 });
 exports.default = AssemblyTable;
 //# sourceMappingURL=AssemblyTable.js.map

package/dist/AssemblyManager/AssemblyTable.js.map

@@ -1 +1 @@
-{"version":3,"file":"AssemblyTable.js","sourceRoot":"","sources":["../../src/AssemblyManager/AssemblyTable.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAUsB;AACtB,uCAA0C;AAE1C,wEAAmD;AACnD,wEAAmD;AACnD,+DAGoC;AAEpC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,KAAK,EAAE;QACL,QAAQ,EAAE,GAAG;QACb,SAAS,EAAE,GAAG;KACf;IACD,UAAU,EAAE;QACV,OAAO,EAAE,CAAC;KACX;IACD,MAAM,EAAE;QACN,OAAO,EAAE,cAAc;QACvB,OAAO,EAAE,CAAC;QACV,SAAS,EAAE,CAAC;QACZ,QAAQ,EAAE,CAAC;KACZ;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,aAAa,GAAG,IAAA,qBAAQ,EAC5B,CAAC,EACC,SAAS,EACT,wBAAwB,EACxB,sBAAsB,GAUvB,EAAE,EAAE;IACH,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,SAAS,cAAc,CAAC,IAAY;QAClC,SAAS,CAAC,OAAO,CAAC,kBAAkB,CAAC,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,MAAM,IAAI,GAAG,SAAS,CAAC,OAAO,CAAC,UAAU,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE;QACvD,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,MAAM,CAAC,CAAA;QAC7C,MAAM,WAAW,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,aAAa,CAAC,CAAA;QAC3D,MAAM,OAAO,GAAG,IAAA,8BAAc,EAAC,QAAQ,EAAE,SAAS,CAAC,CAAA;QACnD,OAAO,CACL,8BAAC,mBAAQ,IAAC,GAAG,EAAE,IAAI;YACjB,8BAAC,oBAAS,QAAE,IAAI,CAAa;YAC7B,8BAAC,oBAAS,QAAE,WAAW,CAAa;YACpC,8BAAC,oBAAS,QAAE,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,CAAa;YAC1D,8BAAC,oBAAS,IAAC,SAAS,EAAE,OAAO,CAAC,UAAU;gBACtC,8BAAC,qBAAU,mBACI,GAAG,IAAI,OAAO,EAC3B,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,wBAAwB,CAAC,IAAI,CAAC,CAAA;wBAC9B,sBAAsB,CAAC,QAAQ,CAAC,CAAA;oBAClC,CAAC;oBAED,8BAAC,gBAAU,IAAC,KAAK,EAAC,SAAS,GAAG,CACnB;gBACb,8BAAC,qBAAU,mBACI,GAAG,IAAI,SAAS,EAC7B,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;wBACZ,cAAc,CAAC,IAAI,CAAC,CAAA;oBACtB,CAAC;oBAED,8BAAC,gBAAU,IAAC,KAAK,EAAC,OAAO,GAAG,CACjB,CACH,CACH,CACZ,CAAA;IACH,CAAC,CAAC,CAAA;IAEF,OAAO,CACL,8BAAC,yBAAc,IAAC,SAAS,EAAE,gBAAK;QAC9B,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;YAC7B,8BAAC,oBAAS;gBACR,8BAAC,mBAAQ;oBACP,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,WAAkB,CAChC;oBACZ,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,mBAA0B,CACxC;oBACZ,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,cAAqB,CACnC;oBACZ,8BAAC,oBAAS;wBACR,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,cAAqB,CACnC,CACH,CACD;YACZ,8BAAC,oBAAS,QAAE,IAAI,CAAa,CACvB,CACO,CAClB,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,aAAa,CAAA"}
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package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js

@@ -29,13 +29,12 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
-// icons
-const Add_1 = __importDefault(require("@mui/icons-material/Add"));
-// other
-const react_virtualized_auto_sizer_1 = __importDefault(require("react-virtualized-auto-sizer"));
 const util_1 = require("@jbrowse/core/util");
 const mobx_react_1 = require("mobx-react");
 const react_vtree_1 = require("react-vtree");
+const react_virtualized_auto_sizer_1 = __importDefault(require("react-virtualized-auto-sizer"));
+// icons
+const Add_1 = __importDefault(require("@mui/icons-material/Add"));
 const Header_1 = __importDefault(require("./Header"));
 const Node_1 = __importDefault(require("./Node"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({

package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map

@@ -1 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js

@@ -5,17 +5,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
 const mui_1 = require("tss-react/mui");
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const mobx_react_1 = require("mobx-react");
 const configuration_1 = require("@jbrowse/core/configuration");
+// icons
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
     connectionContainer: {
         margin: theme.spacing(4),
         width: 500,
@@ -24,11 +20,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
 function ManageConnectionsDlg({ session, handleClose, breakConnection, }) {
     const { classes } = useStyles();
     const { adminMode, connections, sessionConnections } = session;
-    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Delete connections",
-            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
-                react_1.default.createElement(Close_1.default, null))),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg", title: "Delete connections" },
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "Click the X icon to delete the connection from your config completely"),
             react_1.default.createElement("div", { className: classes.connectionContainer },

package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ManageConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CAOsB;AACtB,yCAAyC;AACzC,uCAA0C;AAC1C,2CAAqC;AACrC,+DAGoC;AAGpC,QAAQ;AACR,sEAAiD;AAEjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,KAAK,EAAE,GAAG;KACX;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,oBAAoB,CAAC,EAC5B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAA;IAC9D,OAAO,CACL,8BAAC,WAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI,EAAC,KAAK,EAAC,oBAAoB;QACzE,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,gFAEE;YACb,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,OAAO,CACL,8BAAC,qBAAU,IAAC,GAAG,EAAE,QAAQ,IAAI,EAAE;wBAC5B,SAAS,KAAI,kBAAkB,aAAlB,kBAAkB,uBAAlB,kBAAkB,CAAE,QAAQ,CAAC,IAAI,CAAC,CAAA,CAAC,CAAC,CAAC,CACjD,8BAAC,qBAAU,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,eAAe,CAAC,IAAI,EAAE,IAAI,CAAC;4BACpD,8BAAC,eAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAChB,CACd,CAAC,CAAC,CAAC,CACF,8BAAC,kBAAO,IAAC,KAAK,EAAC,8DAA8D;4BAC3E,8BAAC,qBAAU;gCACT,8BAAC,eAAS,IAAC,KAAK,EAAC,UAAU,GAAG,CACnB,CACL,CACX;wBACA,IAAI,CACM,CACd,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,8BAAC,qBAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,oBAAoB,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js

@@ -6,8 +6,8 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.ellipses = void 0;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
 const mui_1 = require("tss-react/mui");
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const mobx_react_1 = require("mobx-react");
 const configuration_1 = require("@jbrowse/core/configuration");
 function ellipses(slug) {
@@ -15,12 +15,6 @@ function ellipses(slug) {
 }
 exports.ellipses = ellipses;
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
     connectionContainer: {
         width: 500,
         margin: theme.spacing(4),
@@ -29,11 +23,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
 function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
     const { classes } = useStyles();
     const { connections, connectionInstances: instances = [] } = session;
-    return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Turn on/off connections",
-            react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose() },
-                react_1.default.createElement(Close_1.default, null))),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg", title: "Turn on/off connections" },
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "Use the checkbox to turn on/off connections"),
             react_1.default.createElement("div", { className: classes.connectionContainer },
@@ -49,7 +39,9 @@ function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
                                 else {
                                     (_a = session.makeConnection) === null || _a === void 0 ? void 0 : _a.call(session, conf);
                                 }
-                            }, color: "primary" }), label: `${name} (${ellipses(assemblyNames.join(','))})` }));
+                            }, color: "primary" }), label: `${name} ${assemblyNames.length
+                            ? '(' + ellipses(assemblyNames.join(',')) + ')'
+                            : ''}` }));
                 }),
                 !connections.length ? (react_1.default.createElement(material_1.Typography, null, "No connections found")) : null)),
         react_1.default.createElement(material_1.DialogActions, null,

package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map

@@ -1 +1 @@
-{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,4CAUsB;AACtB,uCAA0C;AAC1C,sEAAiD;AACjD,2CAAqC;AACrC,+DAGoC;AAGpC,SAAgB,QAAQ,CAAC,IAAY;IACnC,OAAO,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAA;AAC5D,CAAC;AAFD,4BAEC;AAED,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACpE,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI;QAC9C,8BAAC,sBAAW;;YAEV,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,8BAAC,eAAS,OAAG,CACF,CACD;QACd,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,sDAAyD;YACpE,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,MAAM,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,eAAe,CAAC,CAAA;oBAC3D,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;oBACxD,OAAO,CACL,8BAAC,2BAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gCACb,IAAI,KAAK,EAAE;oCACT,eAAe,CAAC,IAAI,CAAC,CAAA;iCACtB;qCAAM;oCACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iCAC/B;4BACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE,GAAG,IAAI,KAAK,QAAQ,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GACvD,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,8BAAC,qBAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,sBAAsB,CAAC,CAAA"}
+{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,4CAOsB;AACtB,yCAAyC;AACzC,uCAA0C;AAC1C,2CAAqC;AACrC,+DAGoC;AAGpC,SAAgB,QAAQ,CAAC,IAAY;IACnC,OAAO,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAA;AAC5D,CAAC;AAFD,4BAEC;AAED,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACpE,OAAO,CACL,8BAAC,WAAM,IACL,IAAI,QACJ,OAAO,EAAE,WAAW,EACpB,QAAQ,EAAC,IAAI,EACb,KAAK,EAAC,yBAAyB;QAE/B,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,sDAAyD;YACpE,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,MAAM,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,eAAe,CAAC,CAAA;oBAC3D,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;oBACxD,OAAO,CACL,8BAAC,2BAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gCACb,IAAI,KAAK,EAAE;oCACT,eAAe,CAAC,IAAI,CAAC,CAAA;iCACtB;qCAAM;oCACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iCAC/B;4BACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE,GAAG,IAAI,IACZ,aAAa,CAAC,MAAM;4BAClB,CAAC,CAAC,GAAG,GAAG,QAAQ,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG;4BAC/C,CAAC,CAAC,EACN,EAAE,GACF,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,8BAAC,qBAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,sBAAsB,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/model.d.ts

@@ -11,7 +11,7 @@ export type TreeNode = {
 };
 export declare function generateHierarchy(model: HierarchicalTrackSelectorModel, trackConfigurations: AnyConfigurationModel[], collapsed: {
     get: (arg: string) => boolean | undefined;
-}): TreeNode[];
+}, extra?: string): TreeNode[];
 export default function stateTreeFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
@@ -62,6 +62,7 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
         })[];
     };
     connectionHierarchy(assemblyName: string, connection: {
+        name: string;
         tracks: AnyConfigurationModel[];
     }): TreeNode[];
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;

package/dist/HierarchicalTrackSelectorWidget/model.js

@@ -32,7 +32,7 @@ function filterTracks(tracks, self, assemblyName) {
         return hasAnyOverlap(compatDisplays, trackDisplays);
     });
 }
-function generateHierarchy(model, trackConfigurations, collapsed) {
+function generateHierarchy(model, trackConfigurations, collapsed, extra) {
     const hierarchy = { children: [] };
     const { filterText, view } = model;
     const session = (0, util_1.getSession)(model);
@@ -52,7 +52,7 @@ function generateHierarchy(model, trackConfigurations, collapsed) {
         for (let i = 0; i < categories.length; i++) {
             const category = categories[i];
             const ret = currLevel.children.find(c => c.name === category);
-            const id = categories.slice(0, i + 1).join(',');
+            const id = extra + '-' + categories.slice(0, i + 1).join(',');
             if (!ret) {
                 const n = {
                     children: [],
@@ -94,7 +94,7 @@ function stateTreeFactory(pluginManager) {
     }))
         .actions(self => ({
         addToSelection(elt) {
-            self.selection = [...self.selection, ...elt];
+            self.selection = (0, util_1.dedupe)([...self.selection, ...elt], e => e.trackId);
         },
         removeFromSelection(elt) {
             self.selection = self.selection.filter(f => !elt.includes(f));
@@ -170,7 +170,7 @@ function stateTreeFactory(pluginManager) {
             const { assemblyManager } = (0, util_1.getSession)(self);
             const assembly = assemblyManager.get(assemblyName);
             const conns = (assembly &&
-                (connectionInstances === null || connectionInstances === void 0 ? void 0 : connectionInstances.filter(c => hasAnyOverlap(assembly.allAliases, (0, configuration_1.getConf)(c, 'assemblyNames'))).map(c => ({
+                (connectionInstances === null || connectionInstances === void 0 ? void 0 : connectionInstances.map(c => ({
                     // @ts-ignore
                     id: (0, mobx_state_tree_1.getSnapshot)(c).configuration,
                     name: (0, configuration_1.getConf)(c, 'name'),
@@ -178,7 +178,7 @@ function stateTreeFactory(pluginManager) {
                     state: {
                         expanded: true,
                     },
-                })))) ||
+                })).filter(f => f.children.length))) ||
                 [];
             return {
                 name: 'Root',
@@ -192,7 +192,7 @@ function stateTreeFactory(pluginManager) {
         connectionHierarchy(assemblyName, connection) {
             return generateHierarchy(
             // eslint-disable-next-line @typescript-eslint/no-explicit-any
-            self, self.connectionTrackConfigurations(assemblyName, connection), self.collapsed);
+            self, self.connectionTrackConfigurations(assemblyName, connection), self.collapsed, connection.name);
         },
     }));
 }