@jbrowse/plugin-data-management 2.1.4 → 2.1.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts +4 -7
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js +16 -22
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map +1 -1
- package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts +9 -1
- package/dist/AddConnectionWidget/components/ConfigureConnection.js +3 -3
- package/dist/AddConnectionWidget/components/ConfigureConnection.js.map +1 -1
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +4 -4
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -12
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js.map +1 -1
- package/dist/AddConnectionWidget/index.d.ts +2 -2
- package/dist/AddConnectionWidget/index.js.map +1 -1
- package/dist/AddConnectionWidget/model.js.map +1 -1
- package/dist/AddTrackWidget/components/AddTrackWidget.js +1 -2
- package/dist/AddTrackWidget/components/AddTrackWidget.js.map +1 -1
- package/dist/AddTrackWidget/components/ConfirmTrack.js +6 -7
- package/dist/AddTrackWidget/components/ConfirmTrack.js.map +1 -1
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +3 -4
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +1 -1
- package/dist/AddTrackWidget/index.d.ts +2 -2
- package/dist/AddTrackWidget/index.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/Header.js +12 -15
- package/dist/HierarchicalTrackSelectorWidget/components/Header.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +6 -7
- package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.d.ts +2 -2
- package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +10 -13
- package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map +1 -1
- package/dist/HierarchicalTrackSelectorWidget/model.js +20 -30
- package/dist/HierarchicalTrackSelectorWidget/model.js.map +1 -1
- package/dist/PluginStoreWidget/components/PluginCard.js +1 -1
- package/dist/PluginStoreWidget/components/PluginCard.js.map +1 -1
- package/dist/PluginStoreWidget/index.d.ts +2 -2
- package/dist/PluginStoreWidget/index.js.map +1 -1
- package/dist/ucsc-trackhub/model.d.ts +16 -4
- package/dist/ucsc-trackhub/ucscTrackHub.d.ts +3 -3
- package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts +4 -7
- package/esm/AddConnectionWidget/components/AddConnectionWidget.js +17 -23
- package/esm/AddConnectionWidget/components/AddConnectionWidget.js.map +1 -1
- package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts +9 -1
- package/esm/AddConnectionWidget/components/ConfigureConnection.js +3 -3
- package/esm/AddConnectionWidget/components/ConfigureConnection.js.map +1 -1
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts +4 -4
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +6 -12
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js.map +1 -1
- package/esm/AddConnectionWidget/index.d.ts +2 -2
- package/esm/AddConnectionWidget/index.js.map +1 -1
- package/esm/AddConnectionWidget/model.js.map +1 -1
- package/esm/AddTrackWidget/components/AddTrackWidget.js +1 -2
- package/esm/AddTrackWidget/components/AddTrackWidget.js.map +1 -1
- package/esm/AddTrackWidget/components/ConfirmTrack.js +4 -5
- package/esm/AddTrackWidget/components/ConfirmTrack.js.map +1 -1
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +3 -4
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +1 -1
- package/esm/AddTrackWidget/index.d.ts +2 -2
- package/esm/AddTrackWidget/index.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/Header.js +7 -10
- package/esm/HierarchicalTrackSelectorWidget/components/Header.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js +6 -7
- package/esm/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.d.ts +2 -2
- package/esm/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js +8 -13
- package/esm/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map +1 -1
- package/esm/HierarchicalTrackSelectorWidget/model.js +21 -31
- package/esm/HierarchicalTrackSelectorWidget/model.js.map +1 -1
- package/esm/PluginStoreWidget/components/PluginCard.js +2 -2
- package/esm/PluginStoreWidget/components/PluginCard.js.map +1 -1
- package/esm/PluginStoreWidget/index.d.ts +2 -2
- package/esm/PluginStoreWidget/index.js.map +1 -1
- package/esm/ucsc-trackhub/model.d.ts +16 -4
- package/esm/ucsc-trackhub/ucscTrackHub.d.ts +3 -3
- package/package.json +3 -3
- package/src/AddConnectionWidget/components/{AddConnectionWidget.js → AddConnectionWidget.tsx} +34 -38
- package/src/AddConnectionWidget/components/ConfigureConnection.tsx +26 -0
- package/src/AddConnectionWidget/components/ConnectionTypeSelect.tsx +43 -52
- package/src/AddConnectionWidget/components/__snapshots__/AddConnectionWidget.test.js.snap +8 -8
- package/src/AddConnectionWidget/{index.js → index.ts} +0 -0
- package/src/AddConnectionWidget/{model.js → model.ts} +0 -0
- package/src/AddTrackWidget/components/AddTrackWidget.test.tsx +75 -85
- package/src/AddTrackWidget/components/AddTrackWidget.tsx +1 -2
- package/src/AddTrackWidget/components/ConfirmTrack.tsx +11 -13
- package/src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx +4 -4
- package/src/AddTrackWidget/{index.js → index.ts} +0 -0
- package/src/HierarchicalTrackSelectorWidget/components/Header.tsx +11 -12
- package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.tsx +7 -15
- package/src/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.tsx +13 -15
- package/src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx +9 -14
- package/src/HierarchicalTrackSelectorWidget/components/__snapshots__/HierarchicalTrackSelector.test.tsx.snap +2 -2
- package/src/HierarchicalTrackSelectorWidget/model.ts +30 -38
- package/src/PluginStoreWidget/components/PluginCard.tsx +3 -4
- package/src/PluginStoreWidget/components/__snapshots__/PluginStoreWidget.test.js.snap +2 -2
- package/src/PluginStoreWidget/{index.js → index.ts} +0 -0
- package/src/AddConnectionWidget/components/ConfigureConnection.js +0 -20
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+
{"version":3,"file":"ConfirmTrack.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/ConfirmTrack.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EACL,IAAI,EACJ,WAAW,EACX,QAAQ,EACR,WAAW,EACX,gBAAgB,EAChB,UAAU,EACV,UAAU,EACV,cAAc,EACd,aAAa,EACb,IAAI,EACJ,IAAI,EACJ,QAAQ,EACR,QAAQ,EACR,KAAK,EACL,SAAS,EACT,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,yBAAyB,EACzB,UAAU,EACV,MAAM,EACN,UAAU,GACX,MAAM,oBAAoB,CAAA;AAE3B,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,2BAA2B,CAAA;AAGnD,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,OAAO,MAAM,0BAA0B,CAAA;AAI9C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC/B;IACD,KAAK,EAAE;QACL,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,QAAQ;QACvB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,IAAI,EAAE;QACJ,SAAS,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC5B;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,aAAa,CAAC,EACrB,YAAY,EACZ,SAAS,GAIV;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,YAAY,CAAC,IAAI,KAAK,oBAAoB,CAAC,CAAC,CAAC,CAClD,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;;QAC3B,kCAAO,SAAS,CAAQ;;QAAgB,GAAG;QACpD,kCAAO,YAAY,CAAC,IAAI,CAAQ;;QAAiB,GAAG;QACpD,kCAAO,MAAA,YAAY,CAAC,UAAU,0CAAE,IAAI,CAAQ;gFAEjC,CACd,CAAC,CAAC,CAAC,CACF,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,OAAO;;QACtB,kCAAO,YAAY,CAAC,IAAI,CAAQ;;QAAyB,GAAG;QAC1E,kCAAO,SAAS,CAAQ;gFAEb,CACd,CAAA;AACH,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,kBAAkB,CACzB,YAAkE;IAElE,IAAI,eAAe,GAAG,EAAE,CAAA;IACxB,8DAA8D;IAC9D,MAAM,KAAK,GAAQ,EAAE,CAAA;IACrB,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,EAAE;;QAC7B,IAAI,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,EAAE;YACrC,IAAI,eAAe,MAAK,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CAAA,EAAE;gBACzD,eAAe,GAAG,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CAAA;gBACnD,KAAK,CAAC,IAAI,CACR,oBAAC,aAAa,IACZ,GAAG,EAAE,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,EACtC,KAAK,EAAE,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,IAEvC,MAAA,OAAO,CAAC,eAAe,0CAAE,QAAQ,CACpB,CACjB,CAAA;aACF;YACD,KAAK,CAAC,IAAI,CACR,oBAAC,QAAQ,IAAC,GAAG,EAAE,OAAO,CAAC,IAAI,EAAE,KAAK,EAAE,OAAO,CAAC,IAAI,IAC7C,CAAA,MAAA,OAAO,CAAC,eAAe,0CAAE,WAAW;gBACnC,CAAC,CAAC,MAAA,OAAO,CAAC,eAAe,0CAAE,WAAW;gBACtC,CAAC,CAAC,OAAO,CAAC,IAAI,CACP,CACZ,CAAA;SACF;IACH,CAAC,CAAC,CAAA;IACF,OAAO,KAAK,CAAA;AACd,CAAC;AAED,SAAS,eAAe,CAAC,aAA4B;IACnD,OAAO,aAAa,CAAC,sBAAsB,CAAC,SAAS,CAGlD,CAAA;AACL,CAAC;AAED,SAAS,aAAa,CAAC,aAA4B;IACjD,OAAO,aAAa,CAAC,sBAAsB,CAAC,OAAO,CAAuB,CAAA;AAC5E,CAAC;AAED,MAAM,kBAAkB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAA4B,EAAE,EAAE;IAC1E,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACxC,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAA;IAC5D,MAAM,CAAC,OAAO,EAAE,UAAU,CAAC,GAAG,QAAQ,CAAC,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAA;IACvD,MAAM,QAAQ,GAAG;QACf;YACE,KAAK,EAAE,qBAAqB;YAC5B,MAAM,EAAE,UAAU;SACnB;QACD;YACE,KAAK,EAAE,0BAA0B;YACjC,MAAM,EAAE,OAAO;SAChB;KACF,CAAA;IACD,SAAS,CAAC,GAAG,EAAE;QACb,KAAK,CAAC,mBAAmB,CAAC,EAAE,UAAU,EAAE,OAAO,EAAE,CAAC,CAAA;IACpD,CAAC,EAAE,CAAC,KAAK,EAAE,UAAU,EAAE,OAAO,CAAC,CAAC,CAAA;IAEhC,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,KAAK;QAC7B,oBAAC,UAAU,iCAAoC;QAC9C,QAAQ,CAAC,GAAG,CAAC,CAAC,OAAO,EAAE,KAAK,EAAE,EAAE,CAAC,CAChC,oBAAC,IAAI,IAAC,MAAM,QAAC,GAAG,EAAE,OAAO,CAAC,KAAK,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;YACtD,oBAAC,WAAW;gBACV,oBAAC,UAAU,QAAE,OAAO,CAAC,KAAK,CAAc;gBACxC,oBAAC,IAAI,IAAC,cAAc;oBACjB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAW,EAAE,GAAW,EAAE,EAAE,CAAC,CAChD,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,EAAE,cAAc;wBAChC,oBAAC,SAAS,IACR,KAAK,EAAE,GAAG,EACV,UAAU,EAAE;gCACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;oCAC5B,oBAAC,UAAU,IACT,KAAK,EAAC,WAAW,EACjB,OAAO,EAAE,GAAG,EAAE;4CACZ,MAAM,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;gDAC7C,OAAO,CAAC,KAAK,GAAG,CAAA;4CAClB,CAAC,CAAC,CAAA;4CACF,KAAK,KAAK,CAAC;gDACT,CAAC,CAAC,aAAa,CAAC,OAAO,CAAC;gDACxB,CAAC,CAAC,UAAU,CAAC,OAAO,CAAC,CAAA;wCACzB,CAAC;wCAED,oBAAC,UAAU,OAAG,CACH,CACE,CAClB;6BACF,GACD,CACO,CACZ,CAAC;oBACF,oBAAC,QAAQ,IAAC,cAAc;wBACtB,oBAAC,SAAS,IACR,KAAK,EAAE,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EACpC,WAAW,EAAC,SAAS,EACrB,QAAQ,EAAE,KAAK,CAAC,EAAE;gCAChB,KAAK,KAAK,CAAC;oCACT,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC;oCAC/B,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;4BACnC,CAAC,EACD,UAAU,EAAE;gCACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;oCAC5B,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE;4CACZ,IAAI,KAAK,KAAK,CAAC,EAAE;gDACf,MAAM,OAAO,GAAa,UAAU,CAAA;gDACpC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;gDACpB,aAAa,CAAC,OAAO,CAAC,CAAA;gDACtB,SAAS,CAAC,EAAE,CAAC,CAAA;6CACd;iDAAM;gDACL,MAAM,OAAO,GAAa,OAAO,CAAA;gDACjC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAA;gDACpB,UAAU,CAAC,OAAO,CAAC,CAAA;gDACnB,SAAS,CAAC,EAAE,CAAC,CAAA;6CACd;wCACH,CAAC,EACD,QAAQ,EAAE,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,KAAK,EA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@@ -1,10 +1,10 @@
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1
1
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import React, { useState } from 'react';
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2
2
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import { Alert, Button, Step, StepContent, StepLabel, Stepper, Typography, } from '@mui/material';
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3
3
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import { makeStyles } from 'tss-react/mui';
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4
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+
import { getRoot } from 'mobx-state-tree';
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4
5
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import { getSession, isElectron, supportedIndexingAdapters, } from '@jbrowse/core/util';
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5
6
|
import { getConf } from '@jbrowse/core/configuration';
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6
7
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import { observer } from 'mobx-react';
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7
|
-
import { getEnv } from 'mobx-state-tree';
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8
8
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// locals
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9
9
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import ConfirmTrack from './ConfirmTrack';
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10
10
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import TrackSourceSelect from './TrackSourceSelect';
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@@ -33,9 +33,8 @@ const steps = ['Enter track data', 'Confirm track type'];
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33
33
|
function AddTrackWorkflow({ model }) {
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34
34
|
const [activeStep, setActiveStep] = useState(0);
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35
35
|
const { classes } = useStyles();
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|
36
|
-
|
|
37
|
-
const {
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|
38
|
-
const { jobsManager } = rootModel;
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36
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+
// eslint-disable-next-line @typescript-eslint/no-explicit-any
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|
37
|
+
const { jobsManager } = getRoot(model);
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|
39
38
|
const session = getSession(model);
|
|
40
39
|
const { assembly, trackAdapter, trackData, trackName, trackType, textIndexTrack, textIndexingConf, } = model;
|
|
41
40
|
const [trackErrorMessage, setTrackErrorMessage] = useState();
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@@ -1 +1 @@
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1
|
-
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|
|
1
|
+
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@@ -1,2 +1,2 @@
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1
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-
export { default as stateModelFactory } from
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2
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-
export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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1
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+
export { default as stateModelFactory } from './model';
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+
export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,EAAE,OAAO,IAAI,iBAAiB,EAAE,MAAM,SAAS,CAAA;AACtD,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA"}
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@@ -1,17 +1,15 @@
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1
1
|
import React, { Suspense, lazy, useState } from 'react';
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2
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-
import { makeStyles } from 'tss-react/mui';
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3
2
|
import { Badge, IconButton, InputAdornment, TextField } from '@mui/material';
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3
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+
import { makeStyles } from 'tss-react/mui';
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4
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+
import { observer } from 'mobx-react';
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5
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+
import JBrowseMenu from '@jbrowse/core/ui/Menu';
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6
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+
import { getSession, getEnv, isSessionModelWithWidgets, isSessionModelWithConnections, isSessionWithAddTracks, } from '@jbrowse/core/util';
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7
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+
import { readConfObject, } from '@jbrowse/core/configuration';
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4
8
|
// icons
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5
9
|
import ClearIcon from '@mui/icons-material/Clear';
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6
10
|
import MenuIcon from '@mui/icons-material/Menu';
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7
11
|
import ShoppingCartIcon from '@mui/icons-material/ShoppingCart';
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8
12
|
import { Cable } from '@jbrowse/core/ui/Icons';
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9
|
-
// other
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10
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-
import JBrowseMenu from '@jbrowse/core/ui/Menu';
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11
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-
import { getSession, isSessionModelWithWidgets, isSessionModelWithConnections, isSessionWithAddTracks, } from '@jbrowse/core/util';
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12
|
-
import { readConfObject, } from '@jbrowse/core/configuration';
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13
|
-
import { observer } from 'mobx-react';
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14
|
-
import { getEnv } from 'mobx-state-tree';
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15
13
|
// lazy components
|
|
16
14
|
const CloseConnectionDialog = lazy(() => import('./CloseConnectionDialog'));
|
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17
15
|
const DeleteConnectionDialog = lazy(() => import('./DeleteConnectionDialog'));
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@@ -37,7 +35,6 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
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37
35
|
const [connectionManagerOpen, setConnectionManagerOpen] = useState(false);
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38
36
|
const [connectionToggleOpen, setConnectionToggleOpen] = useState(false);
|
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39
37
|
const { assemblyNames } = model;
|
|
40
|
-
const assemblyName = assemblyNames[assemblyIdx];
|
|
41
38
|
function breakConnection(connectionConf, deletingConnection) {
|
|
42
39
|
const name = readConfObject(connectionConf, 'name');
|
|
43
40
|
// @ts-ignore
|
|
@@ -104,7 +101,7 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
|
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|
104
101
|
},
|
|
105
102
|
...assemblyMenuItems,
|
|
106
103
|
];
|
|
107
|
-
const items = getEnv(model).pluginManager.evaluateExtensionPoint('TrackSelector-multiTrackMenuItems');
|
|
104
|
+
const items = getEnv(model).pluginManager.evaluateExtensionPoint('TrackSelector-multiTrackMenuItems', [], { session });
|
|
108
105
|
return (React.createElement("div", { ref: ref => setHeaderHeight((ref === null || ref === void 0 ? void 0 : ref.getBoundingClientRect().height) || 0), "data-testid": "hierarchical_track_selector" },
|
|
109
106
|
React.createElement("div", { style: { display: 'flex' } },
|
|
110
107
|
isSessionWithAddTracks(session) && (React.createElement(IconButton, { className: classes.menuIcon, onClick: event => setMenuEl(event.currentTarget) },
|
|
@@ -143,7 +140,7 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
|
|
|
143
140
|
modalInfo ? (React.createElement(CloseConnectionDialog, { modalInfo: modalInfo, setModalInfo: setModalInfo })) : null,
|
|
144
141
|
deleteDlgDetails ? (React.createElement(DeleteConnectionDialog, { handleClose: () => setDeleteDlgDetails(undefined), deleteDialogDetails: deleteDlgDetails, session: session })) : null,
|
|
145
142
|
connectionManagerOpen ? (React.createElement(ManageConnectionsDialog, { handleClose: () => setConnectionManagerOpen(false), breakConnection: breakConnection, session: session })) : null,
|
|
146
|
-
connectionToggleOpen ? (React.createElement(ToggleConnectionsDialog, { handleClose: () => setConnectionToggleOpen(false), session: session, breakConnection: breakConnection
|
|
143
|
+
connectionToggleOpen ? (React.createElement(ToggleConnectionsDialog, { handleClose: () => setConnectionToggleOpen(false), session: session, breakConnection: breakConnection })) : null)));
|
|
147
144
|
}
|
|
148
145
|
export default observer(HierarchicalTrackSelectorHeader);
|
|
149
146
|
//# sourceMappingURL=Header.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvD,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"Header.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/Header.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvD,OAAO,EAAE,KAAK,EAAE,UAAU,EAAE,cAAc,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAC5E,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,WAAyB,MAAM,uBAAuB,CAAA;AAC7D,OAAO,EACL,UAAU,EACV,MAAM,EACN,yBAAyB,EACzB,6BAA6B,EAC7B,sBAAsB,GACvB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAEpC,QAAQ;AACR,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,QAAQ,MAAM,0BAA0B,CAAA;AAC/C,OAAO,gBAAgB,MAAM,kCAAkC,CAAA;AAC/D,OAAO,EAAE,KAAK,EAAE,MAAM,wBAAwB,CAAA;AAK9C,kBAAkB;AAClB,MAAM,qBAAqB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,yBAAyB,CAAC,CAAC,CAAA;AAC3E,MAAM,sBAAsB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,0BAA0B,CAAC,CAAC,CAAA;AAC7E,MAAM,uBAAuB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAC/E,MAAM,uBAAuB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,2BAA2B,CAAC,CAAC,CAAA;AAE/E,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,SAAS,EAAE;QACT,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,QAAQ,EAAE;QACR,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC7B,YAAY,EAAE,CAAC;KAChB;CACF,CAAC,CAAC,CAAA;AAcH,SAAS,+BAA+B,CAAC,EACvC,KAAK,EACL,eAAe,EACf,cAAc,EACd,WAAW,GAMZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,EAAqB,CAAA;IACrE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,EAAqB,CAAA;IACnE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAqB,CAAA;IACzD,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,GAAG,QAAQ,EAAa,CAAA;IACvD,MAAM,CAAC,gBAAgB,EAAE,mBAAmB,CAAC,GAAG,QAAQ,EAAiB,CAAA;IACzE,MAAM,CAAC,qBAAqB,EAAE,wBAAwB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACzE,MAAM,CAAC,oBAAoB,EAAE,uBAAuB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAE/B,SAAS,eAAe,CACtB,cAAqC,EACrC,kBAA4B;QAE5B,MAAM,IAAI,GAAG,cAAc,CAAC,cAAc,EAAE,MAAM,CAAC,CAAA;QAEnD,aAAa;QACb,MAAM,MAAM,GAAG,OAAO,CAAC,wBAAwB,CAAC,cAAc,CAAC,CAAA;QAC/D,IAAI,MAAM,EAAE;YACV,MAAM,CAAC,qBAAqB,EAAE,oBAAoB,CAAC,GAAG,MAAM,CAAA;YAC5D,IAAI,MAAM,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE;gBAChD,YAAY,CAAC;oBACX,cAAc;oBACd,qBAAqB;oBACrB,oBAAoB;oBACpB,IAAI;iBACL,CAAC,CAAA;aACH;iBAAM;gBACL,qBAAqB,EAAE,CAAA;aACxB;SACF;QACD,IAAI,kBAAkB,EAAE;YACtB,mBAAmB,CAAC,EAAE,IAAI,EAAE,cAAc,EAAE,CAAC,CAAA;SAC9C;IACH,CAAC;IAED,MAAM,mBAAmB,GAAG;QAC1B;YACE,KAAK,EAAE,4BAA4B;YACnC,OAAO,EAAE,GAAG,EAAE,CAAC,uBAAuB,CAAC,IAAI,CAAC;SAC7C;KACF,CAAA;IAED,IAAI,6BAA6B,CAAC,OAAO,CAAC,EAAE;QAC1C,mBAAmB,CAAC,OAAO,CAAC;YAC1B,KAAK,EAAE,gBAAgB;YACvB,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;oBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,qBAAqB,EAAE,qBAAqB,CAAC,CAChE,CAAA;iBACF;YACH,CAAC;SACF,CAAC,CAAA;QAEF,mBAAmB,CAAC,IAAI,CAAC;YACvB,KAAK,EAAE,uBAAuB;YAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,wBAAwB,CAAC,IAAI,CAAC;SAC9C,CAAC,CAAA;KACH;IAED,MAAM,iBAAiB,GACrB,aAAa,CAAC,MAAM,GAAG,CAAC;QACtB,CAAC,CAAC;YACE;gBACE,KAAK,EAAE,oBAAoB;gBAC3B,OAAO,EAAE,aAAa,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC;oBACzC,KAAK,EAAE,IAAI;oBACX,OAAO,EAAE,GAAG,EAAE,CAAC,cAAc,CAAC,GAAG,CAAC;iBACnC,CAAC,CAAC;aACJ;SACF;QACH,CAAC,CAAC,EAAE,CAAA;IAER,MAAM,SAAS,GAAG;QAChB;YACE,KAAK,EAAE,cAAc;YACrB,OAAO,EAAE,GAAG,EAAE;gBACZ,IAAI,yBAAyB,CAAC,OAAO,CAAC,EAAE;oBACtC,OAAO,CAAC,UAAU,CAChB,OAAO,CAAC,SAAS,CAAC,gBAAgB,EAAE,gBAAgB,EAAE;wBACpD,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,EAAE;qBACpB,CAAC,CACH,CAAA;iBACF;YACH,CAAC;SACF;QAED,GAAG,iBAAiB;KACrB,CAAA;IAED,MAAM,KAAK,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC,aAAa,CAAC,sBAAsB,CAC9D,mCAAmC,EACnC,EAAE,EACF,EAAE,OAAO,EAAE,CACE,CAAA;IACf,OAAO,CACL,6BACE,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC,eAAe,CAAC,CAAA,GAAG,aAAH,GAAG,uBAAH,GAAG,CAAE,qBAAqB,GAAG,MAAM,KAAI,CAAC,CAAC,iBACzD,6BAA6B;QAEzC,6BAAK,KAAK,EAAE,EAAE,OAAO,EAAE,MAAM,EAAE;YAC5B,sBAAsB,CAAC,OAAO,CAAC,IAAI,CAClC,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,aAAa,CAAC;gBAEhD,oBAAC,QAAQ,OAAG,CACD,CACd;YAEA,OAAO,CAAC,cAAc,IAAI,CACzB,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,eAAe,CAAC,KAAK,CAAC,aAAa,CAAC;gBAEtD,oBAAC,KAAK,OAAG,CACE,CACd;YAEA,KAAK,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,CACxB,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,OAAO,EAAE,KAAK,CAAC,EAAE,CAAC,cAAc,CAAC,KAAK,CAAC,aAAa,CAAC;gBAErD,oBAAC,KAAK,IAAC,YAAY,EAAE,KAAK,CAAC,SAAS,CAAC,MAAM,EAAE,KAAK,EAAC,SAAS;oBAC1D,oBAAC,gBAAgB,OAAG,CACd,CACG,CACd,CAAC,CAAC,CAAC,IAAI;YAER,oBAAC,SAAS,IACR,SAAS,EAAE,OAAO,CAAC,SAAS,EAC5B,KAAK,EAAC,eAAe,EACrB,KAAK,EAAE,KAAK,CAAC,UAAU,EACvB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,KAAK,CAAC,aAAa,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,EAC1D,SAAS,QACT,UAAU,EAAE;oBACV,YAAY,EAAE,CACZ,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK;wBAC5B,oBAAC,UAAU,IAAC,KAAK,EAAC,WAAW,EAAC,OAAO,EAAE,KAAK,CAAC,eAAe;4BAC1D,oBAAC,SAAS,OAAG,CACF,CACE,CAClB;iBACF,GACD,CACE;QACN,oBAAC,WAAW,IACV,QAAQ,EAAE,YAAY,EACtB,IAAI,EAAE,OAAO,CAAC,YAAY,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAC,EAAE,QAAQ,EAAE,EAAE;gBAC/B,QAAQ,EAAE,CAAA;gBAC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@@ -29,13 +29,12 @@ function ManageConnectionsDlg({ session, handleClose, breakConnection, }) {
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React.createElement("div", { className: classes.connectionContainer },
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connections.map(conf => {
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const name = readConfObject(conf, 'name');
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return (React.createElement(
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name)));
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return (React.createElement(Typography, { key: `conn-${name}` },
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adminMode || (sessionConnections === null || sessionConnections === void 0 ? void 0 : sessionConnections.includes(conf)) ? (React.createElement(IconButton, { onClick: () => breakConnection(conf, true) },
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+
React.createElement(CloseIcon, { color: "error" }))) : (React.createElement(Tooltip, { title: "Unable to delete connection in config file as non-admin user" },
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React.createElement(IconButton, null,
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React.createElement(CloseIcon, { color: "disabled" })))),
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name));
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}),
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!connections.length ? (React.createElement(Typography, null, "No connections found")) : null)),
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React.createElement(DialogActions, null,
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"ManageConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,MAAM,EACN,WAAW,EACX,aAAa,EACb,aAAa,EACb,UAAU,EACV,OAAO,EACP,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAGpC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,KAAK,EAAE,GAAG;KACX;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,oBAAoB,CAAC,EAC5B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAA;IAC9D,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI;QAC9C,oBAAC,WAAW;;YAEV,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,oBAAC,SAAS,OAAG,CACF,CACD;QACd,oBAAC,aAAa;YACZ,oBAAC,UAAU,gFAEE;YACb,6BAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,cAAc,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,OAAO,CACL,
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1
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+
{"version":3,"file":"ManageConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,MAAM,EACN,WAAW,EACX,aAAa,EACb,aAAa,EACb,UAAU,EACV,OAAO,EACP,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAGpC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACxB,KAAK,EAAE,GAAG;KACX;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,oBAAoB,CAAC,EAC5B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,SAAS,EAAE,WAAW,EAAE,kBAAkB,EAAE,GAAG,OAAO,CAAA;IAC9D,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI;QAC9C,oBAAC,WAAW;;YAEV,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,oBAAC,SAAS,OAAG,CACF,CACD;QACd,oBAAC,aAAa;YACZ,oBAAC,UAAU,gFAEE;YACb,6BAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,cAAc,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,OAAO,CACL,oBAAC,UAAU,IAAC,GAAG,EAAE,QAAQ,IAAI,EAAE;wBAC5B,SAAS,KAAI,kBAAkB,aAAlB,kBAAkB,uBAAlB,kBAAkB,CAAE,QAAQ,CAAC,IAAI,CAAC,CAAA,CAAC,CAAC,CAAC,CACjD,oBAAC,UAAU,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,eAAe,CAAC,IAAI,EAAE,IAAI,CAAC;4BACpD,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAChB,CACd,CAAC,CAAC,CAAC,CACF,oBAAC,OAAO,IAAC,KAAK,EAAC,8DAA8D;4BAC3E,oBAAC,UAAU;gCACT,oBAAC,SAAS,IAAC,KAAK,EAAC,UAAU,GAAG,CACnB,CACL,CACX;wBACA,IAAI,CACM,CACd,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,oBAAC,UAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,oBAAoB,CAAC,CAAA"}
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@@ -1,10 +1,10 @@
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1
1
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/// <reference types="react" />
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2
2
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import { AnyConfigurationModel } from '@jbrowse/core/configuration';
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3
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import { AbstractSessionModel } from '@jbrowse/core/util';
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4
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-
declare function
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4
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+
export declare function ellipses(slug: string): string;
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5
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+
declare function ToggleConnectionDialog({ session, handleClose, breakConnection, }: {
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5
6
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handleClose: () => void;
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session: AbstractSessionModel;
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7
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-
assemblyName: string;
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8
8
|
breakConnection: (arg: AnyConfigurationModel) => void;
|
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9
9
|
}): JSX.Element;
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10
10
|
declare const _default: typeof ToggleConnectionDialog;
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@@ -4,6 +4,9 @@ import { makeStyles } from 'tss-react/mui';
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4
4
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import CloseIcon from '@mui/icons-material/Close';
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import { observer } from 'mobx-react';
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import { readConfObject, } from '@jbrowse/core/configuration';
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export function ellipses(slug) {
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return slug.length > 20 ? `${slug.slice(0, 20)}...` : slug;
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}
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const useStyles = makeStyles()(theme => ({
|
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closeButton: {
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position: 'absolute',
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@@ -16,16 +19,9 @@ const useStyles = makeStyles()(theme => ({
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margin: theme.spacing(4),
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},
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}));
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function ToggleConnectionDialog({ session, handleClose,
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function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
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const { classes } = useStyles();
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const { connections, connectionInstances: instances = [] } = session;
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const assemblySpecificConnections = connections.filter(c => {
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const configAssemblyNames = readConfObject(c, 'assemblyNames');
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}
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return configAssemblyNames.includes(assemblyName);
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});
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return (React.createElement(Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
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React.createElement(DialogTitle, null,
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"Turn on/off connections",
|
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@@ -34,8 +30,9 @@ function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConne
|
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React.createElement(DialogContent, null,
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React.createElement(Typography, null, "Use the checkbox to turn on/off connections"),
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React.createElement("div", { className: classes.connectionContainer },
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connections.map(conf => {
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const assemblyNames = readConfObject(conf, 'assemblyNames');
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const found = instances.find(conn => name === conn.name);
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return (React.createElement(FormControlLabel, { key: conf.connectionId, control: React.createElement(Checkbox, { checked: !!found, onChange: () => {
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var _a;
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@@ -45,11 +42,9 @@ function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConne
|
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else {
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(_a = session.makeConnection) === null || _a === void 0 ? void 0 : _a.call(session, conf);
|
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}
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}, color: "primary" }), label: name }));
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}, color: "primary" }), label: `${name} (${ellipses(assemblyNames.join(','))})` }));
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}),
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!
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"No connections found for ",
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assemblyName)) : null)),
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+
!connections.length ? (React.createElement(Typography, null, "No connections found")) : null)),
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React.createElement(DialogActions, null,
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React.createElement(Button, { onClick: () => handleClose(), variant: "contained", color: "primary" }, "Close"))));
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}
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@@ -1 +1 @@
|
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1
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-
{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,QAAQ,EACR,MAAM,EACN,WAAW,EACX,aAAa,EACb,aAAa,EACb,gBAAgB,EAChB,UAAU,EACV,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAGpC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,
|
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1
|
+
{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EACL,MAAM,EACN,QAAQ,EACR,MAAM,EACN,WAAW,EACX,aAAa,EACb,aAAa,EACb,gBAAgB,EAChB,UAAU,EACV,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAEL,cAAc,GACf,MAAM,6BAA6B,CAAA;AAGpC,MAAM,UAAU,QAAQ,CAAC,IAAY;IACnC,OAAO,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAA;AAC5D,CAAC;AAED,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACpE,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI;QAC9C,oBAAC,WAAW;;YAEV,oBAAC,UAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,oBAAC,SAAS,OAAG,CACF,CACD;QACd,oBAAC,aAAa;YACZ,oBAAC,UAAU,sDAAyD;YACpE,6BAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,cAAc,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,MAAM,aAAa,GAAG,cAAc,CAAC,IAAI,EAAE,eAAe,CAAC,CAAA;oBAC3D,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;oBACxD,OAAO,CACL,oBAAC,gBAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,oBAAC,QAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gCACb,IAAI,KAAK,EAAE;oCACT,eAAe,CAAC,IAAI,CAAC,CAAA;iCACtB;qCAAM;oCACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iCAC/B;4BACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE,GAAG,IAAI,KAAK,QAAQ,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GACvD,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,oBAAC,UAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,oBAAC,aAAa;YACZ,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,sBAAsB,CAAC,CAAA"}
|
|
@@ -1,24 +1,17 @@
|
|
|
1
|
-
import { types,
|
|
1
|
+
import { types, getSnapshot } from 'mobx-state-tree';
|
|
2
2
|
import { getConf, readConfObject, } from '@jbrowse/core/configuration';
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3
|
-
import { getSession } from '@jbrowse/core/util';
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3
|
+
import { getSession, getEnv } from '@jbrowse/core/util';
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|
4
|
+
import { getTrackName } from '@jbrowse/core/util/tracks';
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4
5
|
import { ElementId } from '@jbrowse/core/util/types/mst';
|
|
5
6
|
function hasAnyOverlap(a1 = [], a2 = []) {
|
|
6
7
|
return !!a1.find(value => a2.includes(value));
|
|
7
8
|
}
|
|
8
|
-
function passesFilter(filter, config) {
|
|
9
|
+
function passesFilter(filter, config, session) {
|
|
9
10
|
const categories = readConfObject(config, 'category');
|
|
10
11
|
const filterLower = filter.toLowerCase();
|
|
11
|
-
return (getTrackName(config).toLowerCase().includes(filterLower) ||
|
|
12
|
+
return (getTrackName(config, session).toLowerCase().includes(filterLower) ||
|
|
12
13
|
!!(categories === null || categories === void 0 ? void 0 : categories.filter(c => c.toLowerCase().includes(filterLower)).length));
|
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13
14
|
}
|
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|
-
function getTrackName(config) {
|
|
15
|
-
if (!config.trackId) {
|
|
16
|
-
throw new Error('not a track');
|
|
17
|
-
}
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18
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-
return (readConfObject(config, 'name') ||
|
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`Reference sequence (${readConfObject(getParent(config), 'displayName') ||
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readConfObject(getParent(config), 'name')})`);
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|
-
}
|
|
22
15
|
function filterTracks(tracks, self, assemblyName) {
|
|
23
16
|
const { assemblyManager } = getSession(self);
|
|
24
17
|
const { pluginManager } = getEnv(self);
|
|
@@ -26,12 +19,9 @@ function filterTracks(tracks, self, assemblyName) {
|
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26
19
|
if (!assembly) {
|
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27
20
|
return [];
|
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28
21
|
}
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22
|
+
const { allAliases } = assembly;
|
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29
23
|
return tracks
|
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30
|
-
.filter(c =>
|
|
31
|
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const trackConfAssemblies = readConfObject(c, 'assemblyNames');
|
|
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|
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const { allAliases } = assembly;
|
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|
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return hasAnyOverlap(allAliases, trackConfAssemblies);
|
|
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|
-
})
|
|
24
|
+
.filter(c => hasAnyOverlap(allAliases, readConfObject(c, 'assemblyNames')))
|
|
35
25
|
.filter(c => {
|
|
36
26
|
const { displayTypes } = pluginManager.getViewType(self.view.type);
|
|
37
27
|
const compatDisplays = displayTypes.map((d) => d.name);
|
|
@@ -42,8 +32,9 @@ function filterTracks(tracks, self, assemblyName) {
|
|
|
42
32
|
export function generateHierarchy(model, trackConfigurations, collapsed) {
|
|
43
33
|
const hierarchy = { children: [] };
|
|
44
34
|
const { filterText, view } = model;
|
|
35
|
+
const session = getSession(model);
|
|
45
36
|
trackConfigurations
|
|
46
|
-
.filter(conf => passesFilter(filterText, conf))
|
|
37
|
+
.filter(conf => passesFilter(filterText, conf, session))
|
|
47
38
|
.forEach(conf => {
|
|
48
39
|
// copy the categories since this array can be mutated downstream
|
|
49
40
|
const categories = [...(readConfObject(conf, 'category') || [])];
|
|
@@ -77,7 +68,7 @@ export function generateHierarchy(model, trackConfigurations, collapsed) {
|
|
|
77
68
|
// using splice here tries to group leaf nodes above hierarchical nodes
|
|
78
69
|
currLevel.children.splice(currLevel.children.findIndex(elt => elt.children.length), 0, {
|
|
79
70
|
id: conf.trackId,
|
|
80
|
-
name: getTrackName(conf),
|
|
71
|
+
name: getTrackName(conf, session),
|
|
81
72
|
conf,
|
|
82
73
|
checked: !!tracks.find(f => f.configuration === conf),
|
|
83
74
|
children: [],
|
|
@@ -171,21 +162,20 @@ export default function stateTreeFactory(pluginManager) {
|
|
|
171
162
|
// eslint-disable-next-line @typescript-eslint/no-explicit-any
|
|
172
163
|
self, self.trackConfigurations(assemblyName), self.collapsed);
|
|
173
164
|
const session = getSession(self);
|
|
174
|
-
const {
|
|
175
|
-
const
|
|
176
|
-
|
|
177
|
-
|
|
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|
-
|
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|
-
|
|
180
|
-
|
|
181
|
-
|
|
182
|
-
|
|
183
|
-
children: this.connectionHierarchy(assemblyName, conn),
|
|
165
|
+
const { connectionInstances } = session;
|
|
166
|
+
const { assemblyManager } = getSession(self);
|
|
167
|
+
const assembly = assemblyManager.get(assemblyName);
|
|
168
|
+
const conns = (assembly &&
|
|
169
|
+
(connectionInstances === null || connectionInstances === void 0 ? void 0 : connectionInstances.filter(c => hasAnyOverlap(assembly.allAliases, getConf(c, 'assemblyNames'))).map(c => ({
|
|
170
|
+
// @ts-ignore
|
|
171
|
+
id: getSnapshot(c).configuration,
|
|
172
|
+
name: getConf(c, 'name'),
|
|
173
|
+
children: this.connectionHierarchy(assemblyName, c),
|
|
184
174
|
state: {
|
|
185
175
|
expanded: true,
|
|
186
176
|
},
|
|
187
|
-
}
|
|
188
|
-
|
|
177
|
+
})))) ||
|
|
178
|
+
[];
|
|
189
179
|
return {
|
|
190
180
|
name: 'Root',
|
|
191
181
|
id: 'Root',
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,
|
|
1
|
+
{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,WAAW,EAAY,MAAM,iBAAiB,CAAA;AAC9D,OAAO,EACL,OAAO,EACP,cAAc,GAEf,MAAM,6BAA6B,CAAA;AACpC,OAAO,EAAwB,UAAU,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AAC7E,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAA;AACxD,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CACnB,MAAc,EACd,MAA6B,EAC7B,OAA6B;IAE7B,MAAM,UAAU,GAAG,cAAc,CAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,YAAY,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACjE,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;IAC/B,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,aAAa,CAAC,UAAU,EAAE,cAAc,CAAC,CAAC,EAAE,eAAe,CAAC,CAAC,CAAC;SAC1E,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD;IAExD,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAEjC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;SACvD,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,cAAc,CAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC/C,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,YAAY,CAAC,IAAI,EAAE,OAAO,CAAC;YACjC,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AAED,MAAM,CAAC,OAAO,UAAU,gBAAgB,CAAC,aAA4B;IACnE,OAAO,KAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,SAAS;QACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,OAAO,CAAC;QACnC,UAAU,EAAE,EAAE;QACd,IAAI,EAAE,KAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;KACzC,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,CAAA;QAC9C,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAC1D,IAAI,CAAC,SAAS,EAAE;gBACd,OAAO,SAAS,CAAA;aACjB;YACD,KAAK,MAAM,OAAO,IAAI,SAAS,CAAC,QAAQ,EAAE;gBACxC,IAAI,QAAQ,CAAC,YAA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import React, { useState } from 'react';
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import { observer } from 'mobx-react';
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import {
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import { getSession } from '@jbrowse/core/util';
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import { getParent } from 'mobx-state-tree';
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import { getSession, getEnv } from '@jbrowse/core/util';
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import { isSessionWithSessionPlugins, } from '@jbrowse/core/util/types';
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import { Card, CardActions, CardContent, Button, Link, Typography, } from '@mui/material';
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import { makeStyles } from 'tss-react/mui';
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@@ -1 +1 @@
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-
{"version":3,"file":"PluginCard.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/PluginCard.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;
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1
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+
{"version":3,"file":"PluginCard.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/PluginCard.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC3C,OAAO,EAAE,UAAU,EAAE,MAAM,EAAE,MAAM,oBAAoB,CAAA;AACvD,OAAO,EAEL,2BAA2B,GAC5B,MAAM,0BAA0B,CAAA;AACjC,OAAO,EACL,IAAI,EACJ,WAAW,EACX,WAAW,EACX,MAAM,EACN,IAAI,EACJ,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,OAAO,MAAM,yBAAyB,CAAA;AAC7C,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAGjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,IAAI,EAAE;QACJ,MAAM,EAAE,KAAK;KACd;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,OAAO;QACnB,WAAW,EAAE,OAAO;KACrB;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,GAAG;KAChB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,WAAW;KACpB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,UAAU,CAAC,EAClB,MAAM,EACN,KAAK,EACL,SAAS,GAKV;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,WAAW,GAAG,OAAO,CACzB,aAAa,CAAC,wBAAwB,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,KAAK,MAAM,CAAC,GAAG,CAAC,CAC3E,CAAA;IACD,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvD,MAAM,aAAa,GAAG,WAAW,IAAI,YAAY,CAAA;IAEjD,8DAA8D;IAC9D,MAAM,SAAS,GAAG,SAAS,CAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC1C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,CAAA;IAE7B,OAAO,CACL,oBAAC,IAAI,IAAC,OAAO,EAAC,UAAU,EAAC,GAAG,EAAE,MAAM,CAAC,IAAI,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;QAChE,oBAAC,WAAW;YACV,6BAAK,SAAS,EAAE,OAAO,CAAC,SAAS;gBAC/B,oBAAC,UAAU,IAAC,OAAO,EAAC,IAAI;oBACtB,oBAAC,IAAI,IACH,IAAI,EAAE,GAAG,MAAM,CAAC,QAAQ,SAAS,EACjC,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,UAAU,IAEb,MAAM,CAAC,IAAI,CACP,CACI,CACT;YACN,6BAAK,SAAS,EAAE,OAAO,CAAC,SAAS;gBAC/B,oBAAC,UAAU,IAAC,KAAK,EAAE,EAAE,WAAW,EAAE,OAAO,EAAE,GAAI;gBAC/C,oBAAC,UAAU,QAAE,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAc,CAChD;YACN,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,mBAA2B;YAC9D,oBAAC,UAAU,QAAE,MAAM,CAAC,WAAW,CAAc,CACjC;QACd,oBAAC,WAAW;YACV,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,aAAa,EACvB,SAAS,EAAE,WAAW,CAAC,CAAC,CAAC,oBAAC,SAAS,OAAG,CAAC,CAAC,CAAC,oBAAC,OAAO,OAAG,EACpD,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,SAAS,EAAE;wBACb,OAAO,CAAC,SAAS,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,CAAC,CAAA;qBAC1D;yBAAM,IAAI,2BAA2B,CAAC,OAAO,CAAC,EAAE;wBAC/C,OAAO,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAA;qBACjC;oBACD,eAAe,CAAC,IAAI,CAAC,CAAA;gBACvB,CAAC,IAEA,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAC/B,CACG,CACT,CACR,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}
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export { default as stateModelFactory } from
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export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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export { default as stateModelFactory } from './model';
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export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
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@@ -1 +1 @@
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,EAAE,OAAO,IAAI,iBAAiB,EAAE,MAAM,SAAS,CAAA;AACtD,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA"}
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@@ -1,14 +1,26 @@
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1
1
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export default function UCSCTrackHubConnection(pluginManager: any): import("mobx-state-tree").IModelType<{
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2
2
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name: import("mobx-state-tree").ISimpleType<string>;
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-
tracks: import("mobx-state-tree").IArrayType<
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tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
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} & {
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5
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configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
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type: import("mobx-state-tree").ISimpleType<"UCSCTrackHubConnection">;
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}, {
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afterAttach(): void;
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-
addTrackConf(trackConf:
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addTrackConf(trackConf: {
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[x: string]: any;
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|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
12
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
13
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
|
|
14
|
+
addTrackConfs(trackConfs: ({
|
|
15
|
+
[x: string]: any;
|
|
16
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
17
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
18
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
|
|
19
|
+
setTrackConfs(trackConfs: ({
|
|
20
|
+
[x: string]: any;
|
|
21
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
22
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
23
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
|
|
12
24
|
clear(): void;
|
|
13
25
|
} & {
|
|
14
26
|
connect(): void;
|
|
@@ -1,6 +1,6 @@
|
|
|
1
|
-
export function fetchHubFile(hubFileLocation: any): Promise<
|
|
2
|
-
export function fetchGenomesFile(genomesFileLocation: any): Promise<
|
|
3
|
-
export function fetchTrackDbFile(trackDbFileLocation: any): Promise<
|
|
1
|
+
export function fetchHubFile(hubFileLocation: any): Promise<import("@gmod/ucsc-hub").HubFile>;
|
|
2
|
+
export function fetchGenomesFile(genomesFileLocation: any): Promise<import("@gmod/ucsc-hub").GenomesFile>;
|
|
3
|
+
export function fetchTrackDbFile(trackDbFileLocation: any): Promise<import("@gmod/ucsc-hub").TrackDbFile>;
|
|
4
4
|
export function generateTracks(trackDb: any, trackDbFileLocation: any, assemblyName: any, sequenceAdapter: any): any[];
|
|
5
5
|
export { ucscAssemblies };
|
|
6
6
|
import ucscAssemblies from "./ucscAssemblies";
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-data-management",
|
|
3
|
-
"version": "2.1.
|
|
3
|
+
"version": "2.1.6",
|
|
4
4
|
"description": "JBrowse 2 linear genome view",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -37,7 +37,7 @@
|
|
|
37
37
|
"clean": "rimraf dist esm *.tsbuildinfo"
|
|
38
38
|
},
|
|
39
39
|
"dependencies": {
|
|
40
|
-
"@gmod/ucsc-hub": "^0.1.
|
|
40
|
+
"@gmod/ucsc-hub": "^0.1.6",
|
|
41
41
|
"@mui/icons-material": "^5.0.1",
|
|
42
42
|
"clsx": "^1.1.0",
|
|
43
43
|
"react-virtualized-auto-sizer": "^1.0.2",
|
|
@@ -61,5 +61,5 @@
|
|
|
61
61
|
"distModule": "esm/index.js",
|
|
62
62
|
"srcModule": "src/index.ts",
|
|
63
63
|
"module": "esm/index.js",
|
|
64
|
-
"gitHead": "
|
|
64
|
+
"gitHead": "df810d2a4f057adcd8f5345d54972508fba007a7"
|
|
65
65
|
}
|