@jbrowse/plugin-data-management 2.1.4 → 2.1.6

package/dist/AddConnectionWidget/components/AddConnectionWidget.d.ts

@@ -1,9 +1,6 @@
-declare function _default({ model }: {
-    model: any;
+/// <reference types="react" />
+declare function AddConnectionWidget({ model }: {
+    model: unknown;
 }): JSX.Element;
-declare namespace _default {
-    namespace propTypes {
-        const model: import("prop-types").Validator<any>;
-    }
-}
+declare const _default: typeof AddConnectionWidget;
 export default _default;

package/dist/AddConnectionWidget/components/AddConnectionWidget.js

@@ -31,7 +31,6 @@ const util_1 = require("@jbrowse/core/util");
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
 const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
 // locals
 const ConfigureConnection_1 = __importDefault(require("./ConfigureConnection"));
 const ConnectionTypeSelect_1 = __importDefault(require("./ConnectionTypeSelect"));
@@ -52,25 +51,25 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
 }));
 const steps = ['Select a Connection Type', 'Configure Connection'];
 function AddConnectionWidget({ model }) {
-    const [connectionType, setConnectionType] = (0, react_1.useState)({});
-    const [configModel, setConfigModel] = (0, react_1.useState)({});
-    const [configModelReady, setConfigModelReady] = (0, react_1.useState)(true);
+    const [connectionType, setConnectionType] = (0, react_1.useState)();
+    const [configModel, setConfigModel] = (0, react_1.useState)();
     const [activeStep, setActiveStep] = (0, react_1.useState)(0);
     const { classes } = useStyles();
     const session = (0, util_1.getSession)(model);
-    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(session);
-    function handleSetConnectionType(newConnectionType) {
-        setConnectionType(newConnectionType);
-        setConfigModel(newConnectionType.configSchema.create({
-            connectionId: `${newConnectionType.name}-${Date.now()}`,
-        }, (0, mobx_state_tree_1.getEnv)(model)));
-    }
+    const { pluginManager } = (0, util_1.getEnv)(session);
     function stepContent() {
         switch (activeStep) {
             case 0:
-                return (react_1.default.createElement(ConnectionTypeSelect_1.default, { connectionTypeChoices: pluginManager.getElementTypesInGroup('connection'), connectionType: connectionType, setConnectionType: handleSetConnectionType }));
+                return (react_1.default.createElement(ConnectionTypeSelect_1.default, { connectionTypeChoices: pluginManager.getElementTypesInGroup('connection'), connectionType: connectionType, setConnectionType: c => {
+                        setConnectionType(c);
+                        if (c) {
+                            setConfigModel(c.configSchema.create({
+                                connectionId: `${c.name}-${Date.now()}`,
+                            }, (0, util_1.getEnv)(model)));
+                        }
+                    } }));
             case 1:
-                return (react_1.default.createElement(ConfigureConnection_1.default, { connectionType: connectionType, model: configModel, setModelReady: setConfigModelReady }));
+                return connectionType && configModel ? (react_1.default.createElement(ConfigureConnection_1.default, { connectionType: connectionType, model: configModel, session: session })) : null;
             default:
                 return react_1.default.createElement(material_1.Typography, null, "Unknown step");
         }
@@ -88,15 +87,13 @@ function AddConnectionWidget({ model }) {
     }
     function handleFinish() {
         const connectionConf = session.addConnectionConf(configModel);
-        session.makeConnection(connectionConf);
+        if (session.makeConnection) {
+            session.makeConnection(connectionConf);
+        }
         session.hideWidget(model);
     }
     function checkNextEnabled() {
-        if ((activeStep === 0 && connectionType.name) ||
-            (activeStep === 1 && configModel && configModelReady)) {
-            return true;
-        }
-        return false;
+        return ((activeStep === 0 && connectionType) || (activeStep === 1 && configModel));
     }
     return (react_1.default.createElement("div", { className: classes.root },
         react_1.default.createElement(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(label => (react_1.default.createElement(material_1.Step, { key: label },
@@ -107,8 +104,5 @@ function AddConnectionWidget({ model }) {
                     react_1.default.createElement(material_1.Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
                     react_1.default.createElement(material_1.Button, { disabled: !checkNextEnabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next')))))))));
 }
-AddConnectionWidget.propTypes = {
-    model: mobx_react_1.PropTypes.observableObject.isRequired,
-};
 exports.default = (0, mobx_react_1.observer)(AddConnectionWidget);
 //# sourceMappingURL=AddConnectionWidget.js.map

package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map

@@ -1 +1 @@
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package/dist/AddConnectionWidget/components/ConfigureConnection.d.ts

@@ -1,2 +1,10 @@
+/// <reference types="react" />
+import { ConnectionType } from '@jbrowse/core/pluggableElementTypes';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { AbstractSessionModel } from '@jbrowse/core/util';
+declare const ConfigureConnection: (props: {
+    connectionType: ConnectionType;
+    model: AnyConfigurationModel;
+    session: AbstractSessionModel;
+}) => JSX.Element;
 export default ConfigureConnection;
-declare function ConfigureConnection(props: any): JSX.Element;

package/dist/AddConnectionWidget/components/ConfigureConnection.js

@@ -26,11 +26,11 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const plugin_config_1 = require("@jbrowse/plugin-config");
 const mobx_react_1 = require("mobx-react");
-const ConfigureConnection = (0, mobx_react_1.observer)(props => {
-    const { connectionType, model, setModelReady } = props;
+const ConfigureConnection = (0, mobx_react_1.observer)((props) => {
+    const { connectionType, model, session } = props;
     const ConfigEditorComponent = connectionType.configEditorComponent || plugin_config_1.ConfigurationEditor;
     return (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null, "Loading...") },
-        react_1.default.createElement(ConfigEditorComponent, { model: { target: model }, setModelReady: setModelReady })));
+        react_1.default.createElement(ConfigEditorComponent, { model: { target: model }, session: session })));
 });
 exports.default = ConfigureConnection;
 //# sourceMappingURL=ConfigureConnection.js.map

package/dist/AddConnectionWidget/components/ConfigureConnection.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ConfigureConnection.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConfigureConnection.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,0DAA4D;AAC5D,2CAAqC;AAKrC,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAClC,CAAC,KAIA,EAAE,EAAE;IACH,MAAM,EAAE,cAAc,EAAE,KAAK,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IAChD,MAAM,qBAAqB,GACzB,cAAc,CAAC,qBAAqB,IAAI,mCAAmB,CAAA;IAE7D,OAAO,CACL,8BAAC,gBAAQ,IAAC,QAAQ,EAAE,wDAAqB;QACvC,8BAAC,qBAAqB,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,OAAO,GAAI,CAC5D,CACZ,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,mBAAmB,CAAA"}

package/dist/AddConnectionWidget/components/ConnectionTypeSelect.d.ts

@@ -1,8 +1,8 @@
 /// <reference types="react" />
-import ConnectionType from '@jbrowse/core/pluggableElementTypes/ConnectionType';
+import { ConnectionType } from '@jbrowse/core/pluggableElementTypes';
 declare function ConnectionTypeSelect(props: {
     connectionTypeChoices: ConnectionType[];
-    connectionType: ConnectionType;
-    setConnectionType: Function;
-}): JSX.Element | null;
+    connectionType?: ConnectionType;
+    setConnectionType: (c?: ConnectionType) => void;
+}): JSX.Element;
 export default ConnectionTypeSelect;

package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js

@@ -28,25 +28,19 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
+// icons
 const OpenInNew_1 = __importDefault(require("@mui/icons-material/OpenInNew"));
 function ConnectionTypeSelect(props) {
     const { connectionTypeChoices, connectionType, setConnectionType } = props;
     (0, react_1.useEffect)(() => {
-        if (!connectionType.name) {
+        if (!connectionType) {
             setConnectionType(connectionTypeChoices[0]);
         }
     });
-    function handleChange(event) {
-        setConnectionType(connectionTypeChoices.find((connectionTypeChoice) => connectionTypeChoice.name === event.target.value));
-    }
-    if (!connectionType.name) {
-        return null;
-    }
-    return (react_1.default.createElement("form", { autoComplete: "off" },
-        react_1.default.createElement(material_1.TextField, { value: connectionType.name, label: "connectionType", helperText: connectionType.description ? (react_1.default.createElement(react_1.default.Fragment, null,
-                connectionType.description,
-                connectionType.url ? (react_1.default.createElement(material_1.IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank", color: "secondary" },
-                    react_1.default.createElement(OpenInNew_1.default, null))) : null)) : null, select: true, fullWidth: true, onChange: handleChange, variant: "outlined" }, connectionTypeChoices.map((connectionTypeChoice) => (react_1.default.createElement(material_1.MenuItem, { key: connectionTypeChoice.name, value: connectionTypeChoice.name }, connectionTypeChoice.displayName || connectionTypeChoice.name))))));
+    return (react_1.default.createElement("form", { autoComplete: "off" }, connectionType ? (react_1.default.createElement(material_1.TextField, { value: connectionType.name, label: "connectionType", helperText: connectionType.description ? (react_1.default.createElement(react_1.default.Fragment, null,
+            connectionType.description,
+            connectionType.url ? (react_1.default.createElement(material_1.IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank", color: "secondary" },
+                react_1.default.createElement(OpenInNew_1.default, null))) : null)) : null, select: true, fullWidth: true, onChange: event => setConnectionType(connectionTypeChoices.find(c => c.name === event.target.value)), variant: "outlined" }, connectionTypeChoices.map(c => (react_1.default.createElement(material_1.MenuItem, { key: c.name, value: c.name }, c.displayName || c.name))))) : null));
 }
 exports.default = ConnectionTypeSelect;
 //# sourceMappingURL=ConnectionTypeSelect.js.map

package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ConnectionTypeSelect.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConnectionTypeSelect.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAwC;AACxC,4CAA+D;AAG/D,QAAQ;AACR,8EAAyD;AAEzD,SAAS,oBAAoB,CAAC,KAI7B;IACC,MAAM,EAAE,qBAAqB,EAAE,cAAc,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAE1E,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,CAAC,cAAc,EAAE;YACnB,iBAAiB,CAAC,qBAAqB,CAAC,CAAC,CAAC,CAAC,CAAA;SAC5C;IACH,CAAC,CAAC,CAAA;IAEF,OAAO,CACL,wCAAM,YAAY,EAAC,KAAK,IACrB,cAAc,CAAC,CAAC,CAAC,CAChB,8BAAC,oBAAS,IACR,KAAK,EAAE,cAAc,CAAC,IAAI,EAC1B,KAAK,EAAC,gBAAgB,EACtB,UAAU,EACR,cAAc,CAAC,WAAW,CAAC,CAAC,CAAC,CAC3B;YACG,cAAc,CAAC,WAAW;YAC1B,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,CACpB,8BAAC,qBAAU,IACT,IAAI,EAAE,cAAc,CAAC,GAAG,EACxB,GAAG,EAAC,qBAAqB,EACzB,MAAM,EAAC,QAAQ,EACf,KAAK,EAAC,WAAW;gBAEjB,8BAAC,mBAAa,OAAG,CACN,CACd,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,EAEV,MAAM,QACN,SAAS,QACT,QAAQ,EAAE,KAAK,CAAC,EAAE,CAChB,iBAAiB,CACf,qBAAqB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAC/D,EAEH,OAAO,EAAC,UAAU,IAEjB,qBAAqB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAC9B,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,IAAI,IACjC,CAAC,CAAC,WAAW,IAAI,CAAC,CAAC,IAAI,CACf,CACZ,CAAC,CACQ,CACb,CAAC,CAAC,CAAC,IAAI,CACH,CACR,CAAA;AACH,CAAC;AAED,kBAAe,oBAAoB,CAAA"}

package/dist/AddConnectionWidget/index.d.ts

@@ -1,2 +1,2 @@
-export { default as stateModel } from "./model";
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as stateModel } from './model';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/AddConnectionWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.js"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAA+C;AAAtC,oHAAA,OAAO,OAAc;AACjB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAA+C;AAAtC,oHAAA,OAAO,OAAc;AACjB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA"}

package/dist/AddConnectionWidget/model.js.map

@@ -1 +1 @@
-{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.js"],"names":[],"mappings":";;AAAA,qDAAuC;AACvC,sDAAwD;AAExD,kBAAe,uBAAK,CAAC,KAAK,CAAC,oBAAoB,EAAE;IAC/C,EAAE,EAAE,eAAS;IACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;CAC3C,CAAC,CAAA"}
+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.ts"],"names":[],"mappings":";;AAAA,qDAAuC;AACvC,sDAAwD;AAExD,kBAAe,uBAAK,CAAC,KAAK,CAAC,oBAAoB,EAAE;IAC/C,EAAE,EAAE,eAAS;IACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;CAC3C,CAAC,CAAA"}

package/dist/AddTrackWidget/components/AddTrackWidget.js

@@ -7,11 +7,10 @@ const react_1 = __importDefault(require("react"));
 const mobx_react_1 = require("mobx-react");
 const material_1 = require("@mui/material");
 const util_1 = require("@jbrowse/core/util");
-const mobx_state_tree_1 = require("mobx-state-tree");
 const DefaultAddTrackWorkflow_1 = __importDefault(require("./DefaultAddTrackWorkflow"));
 function AddTrackSelector({ model }) {
     const [val, setVal] = (0, util_1.useLocalStorage)('trackSelector-choice', 'Default');
-    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
+    const { pluginManager } = (0, util_1.getEnv)(model);
     const widgets = pluginManager.getElementTypesInGroup('add track workflow');
     const ComponentMap = {
         Default: DefaultAddTrackWorkflow_1.default,

package/dist/AddTrackWidget/components/AddTrackWidget.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA6E;AAE7E,6CAA4D;AAI5D,wFAA+D;AAE/D,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,IAAA,sBAAe,EAAC,sBAAsB,EAAE,SAAS,CAAC,CAAA;IACxE,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,OAAO,GAAG,aAAa,CAAC,sBAAsB,CAClD,oBAAoB,CACK,CAAA;IAC3B,MAAM,YAAY,GAAG;QACnB,OAAO,EAAE,iCAAuB;QAChC,GAAG,MAAM,CAAC,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;KACX,CAAA;IAE1D,8CAA8C;IAC9C,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAA;IAChD,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IACpC,OAAO,CACL;QACE,8BAAC,sBAAW;YACV,8BAAC,iBAAM,IAAC,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAC/D,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAClC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,IACvB,CAAC,CACO,CACZ,CAAC,CACK;YACT,8BAAC,yBAAc,qCAA4C,CAC/C;QAEd,yCAAM;QACN,8BAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,gBAAgB,CAAC,CAAA"}

package/dist/AddTrackWidget/components/ConfirmTrack.js

@@ -27,16 +27,15 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
+const configuration_1 = require("@jbrowse/core/configuration");
+const util_1 = require("@jbrowse/core/util");
+const mobx_react_1 = require("mobx-react");
+const tracks_1 = require("@jbrowse/core/util/tracks");
 // icons
 const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
 const Add_1 = __importDefault(require("@mui/icons-material//Add"));
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const tracks_1 = require("@jbrowse/core/util/tracks");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     spacing: {
         marginBottom: theme.spacing(3),
@@ -170,7 +169,7 @@ const TextIndexingConfig = (0, mobx_react_1.observer)(({ model }) => {
 const TrackAdapterSelector = (0, mobx_react_1.observer)(({ model }) => {
     const { classes } = useStyles();
     const { trackAdapter } = model;
-    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
+    const { pluginManager } = (0, util_1.getEnv)(model);
     const adapters = getAdapterTypes(pluginManager);
     return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "adapterType", helperText: "Select an adapter type", select: true, fullWidth: true, onChange: event => model.setAdapterHint(event.target.value), SelectProps: {
             // @ts-ignore
@@ -212,7 +211,7 @@ const TrackTypeSelector = (0, mobx_react_1.observer)(({ model }) => {
     const { classes } = useStyles();
     const session = (0, util_1.getSession)(model);
     const { trackType } = model;
-    const trackTypes = getTrackTypes((0, mobx_state_tree_1.getEnv)(session).pluginManager);
+    const trackTypes = getTrackTypes((0, util_1.getEnv)(session).pluginManager);
     return (react_1.default.createElement(material_1.TextField, { className: classes.spacing, value: trackType, label: "trackType", helperText: "Select a track type", select: true, fullWidth: true, onChange: event => {
             model.setTrackType(event.target.value);
         }, SelectProps: {

package/dist/AddTrackWidget/components/ConfirmTrack.js.map

@@ -1 +1 @@
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package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js

@@ -29,10 +29,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
+const mobx_state_tree_1 = require("mobx-state-tree");
 const util_1 = require("@jbrowse/core/util");
 const configuration_1 = require("@jbrowse/core/configuration");
 const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
 // locals
 const ConfirmTrack_1 = __importDefault(require("./ConfirmTrack"));
 const TrackSourceSelect_1 = __importDefault(require("./TrackSourceSelect"));
@@ -61,9 +61,8 @@ const steps = ['Enter track data', 'Confirm track type'];
 function AddTrackWorkflow({ model }) {
     const [activeStep, setActiveStep] = (0, react_1.useState)(0);
     const { classes } = useStyles();
-    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
-    const { rootModel } = pluginManager;
-    const { jobsManager } = rootModel;
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    const { jobsManager } = (0, mobx_state_tree_1.getRoot)(model);
     const session = (0, util_1.getSession)(model);
     const { assembly, trackAdapter, trackData, trackName, trackType, textIndexTrack, textIndexingConf, } = model;
     const [trackErrorMessage, setTrackErrorMessage] = (0, react_1.useState)();

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map

@@ -1 +1 @@
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package/dist/AddTrackWidget/index.d.ts

@@ -1,2 +1,2 @@
-export { default as stateModelFactory } from "./model";
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as stateModelFactory } from './model';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/AddTrackWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.js"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddTrackWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,gBAAgB,EAAE,EAAE,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/components/Header.js

@@ -27,19 +27,17 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
-const mui_1 = require("tss-react/mui");
 const material_1 = require("@mui/material");
+const mui_1 = require("tss-react/mui");
+const mobx_react_1 = require("mobx-react");
+const Menu_1 = __importDefault(require("@jbrowse/core/ui/Menu"));
+const util_1 = require("@jbrowse/core/util");
+const configuration_1 = require("@jbrowse/core/configuration");
 // icons
 const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
-const Menu_1 = __importDefault(require("@mui/icons-material/Menu"));
+const Menu_2 = __importDefault(require("@mui/icons-material/Menu"));
 const ShoppingCart_1 = __importDefault(require("@mui/icons-material/ShoppingCart"));
 const Icons_1 = require("@jbrowse/core/ui/Icons");
-// other
-const Menu_2 = __importDefault(require("@jbrowse/core/ui/Menu"));
-const util_1 = require("@jbrowse/core/util");
-const configuration_1 = require("@jbrowse/core/configuration");
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
 // lazy components
 const CloseConnectionDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./CloseConnectionDialog'))));
 const DeleteConnectionDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./DeleteConnectionDialog'))));
@@ -65,7 +63,6 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
     const [connectionManagerOpen, setConnectionManagerOpen] = (0, react_1.useState)(false);
     const [connectionToggleOpen, setConnectionToggleOpen] = (0, react_1.useState)(false);
     const { assemblyNames } = model;
-    const assemblyName = assemblyNames[assemblyIdx];
     function breakConnection(connectionConf, deletingConnection) {
         const name = (0, configuration_1.readConfObject)(connectionConf, 'name');
         // @ts-ignore
@@ -132,11 +129,11 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
         },
         ...assemblyMenuItems,
     ];
-    const items = (0, mobx_state_tree_1.getEnv)(model).pluginManager.evaluateExtensionPoint('TrackSelector-multiTrackMenuItems');
+    const items = (0, util_1.getEnv)(model).pluginManager.evaluateExtensionPoint('TrackSelector-multiTrackMenuItems', [], { session });
     return (react_1.default.createElement("div", { ref: ref => setHeaderHeight((ref === null || ref === void 0 ? void 0 : ref.getBoundingClientRect().height) || 0), "data-testid": "hierarchical_track_selector" },
         react_1.default.createElement("div", { style: { display: 'flex' } },
             (0, util_1.isSessionWithAddTracks)(session) && (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: event => setMenuEl(event.currentTarget) },
-                react_1.default.createElement(Menu_1.default, null))),
+                react_1.default.createElement(Menu_2.default, null))),
             session.makeConnection && (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: event => setConnectionEl(event.currentTarget) },
                 react_1.default.createElement(Icons_1.Cable, null))),
             model.selection.length ? (react_1.default.createElement(material_1.IconButton, { className: classes.menuIcon, onClick: event => setSelectionEl(event.currentTarget) },
@@ -147,15 +144,15 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
                         react_1.default.createElement(material_1.IconButton, { color: "secondary", onClick: model.clearFilterText },
                             react_1.default.createElement(Clear_1.default, null)))),
                 } })),
-        react_1.default.createElement(Menu_2.default, { anchorEl: connectionEl, open: Boolean(connectionEl), onMenuItemClick: (_, callback) => {
+        react_1.default.createElement(Menu_1.default, { anchorEl: connectionEl, open: Boolean(connectionEl), onMenuItemClick: (_, callback) => {
                 callback();
                 setConnectionEl(undefined);
             }, onClose: () => setConnectionEl(undefined), menuItems: connectionMenuItems }),
-        react_1.default.createElement(Menu_2.default, { anchorEl: menuEl, open: Boolean(menuEl), onMenuItemClick: (_, callback) => {
+        react_1.default.createElement(Menu_1.default, { anchorEl: menuEl, open: Boolean(menuEl), onMenuItemClick: (_, callback) => {
                 callback();
                 setMenuEl(undefined);
             }, onClose: () => setMenuEl(undefined), menuItems: menuItems }),
-        react_1.default.createElement(Menu_2.default, { anchorEl: selectionEl, open: Boolean(selectionEl), onMenuItemClick: (_, callback) => {
+        react_1.default.createElement(Menu_1.default, { anchorEl: selectionEl, open: Boolean(selectionEl), onMenuItemClick: (_, callback) => {
                 callback();
                 setSelectionEl(undefined);
             }, onClose: () => setSelectionEl(undefined), menuItems: [
@@ -171,7 +168,7 @@ function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, setAssemblyId
             modalInfo ? (react_1.default.createElement(CloseConnectionDialog, { modalInfo: modalInfo, setModalInfo: setModalInfo })) : null,
             deleteDlgDetails ? (react_1.default.createElement(DeleteConnectionDialog, { handleClose: () => setDeleteDlgDetails(undefined), deleteDialogDetails: deleteDlgDetails, session: session })) : null,
             connectionManagerOpen ? (react_1.default.createElement(ManageConnectionsDialog, { handleClose: () => setConnectionManagerOpen(false), breakConnection: breakConnection, session: session })) : null,
-            connectionToggleOpen ? (react_1.default.createElement(ToggleConnectionsDialog, { handleClose: () => setConnectionToggleOpen(false), session: session, breakConnection: breakConnection, assemblyName: assemblyName })) : null)));
+            connectionToggleOpen ? (react_1.default.createElement(ToggleConnectionsDialog, { handleClose: () => setConnectionToggleOpen(false), session: session, breakConnection: breakConnection })) : null)));
 }
 exports.default = (0, mobx_react_1.observer)(HierarchicalTrackSelectorHeader);
 //# sourceMappingURL=Header.js.map

package/dist/HierarchicalTrackSelectorWidget/components/Header.js.map

@@ -1 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js

@@ -34,13 +34,12 @@ function ManageConnectionsDlg({ session, handleClose, breakConnection, }) {
             react_1.default.createElement("div", { className: classes.connectionContainer },
                 connections.map(conf => {
                     const name = (0, configuration_1.readConfObject)(conf, 'name');
-                    return (react_1.default.createElement("div", { key: `conn-${name}` },
-                        react_1.default.createElement(material_1.Typography, null,
-                            adminMode || (sessionConnections === null || sessionConnections === void 0 ? void 0 : sessionConnections.includes(conf)) ? (react_1.default.createElement(material_1.IconButton, { onClick: () => breakConnection(conf, true) },
-                                react_1.default.createElement(Close_1.default, { color: "error" }))) : (react_1.default.createElement(material_1.Tooltip, { title: "Unable to delete connection in config file as non-admin user" },
-                                react_1.default.createElement(material_1.IconButton, null,
-                                    react_1.default.createElement(Close_1.default, { color: "disabled" })))),
-                            name)));
+                    return (react_1.default.createElement(material_1.Typography, { key: `conn-${name}` },
+                        adminMode || (sessionConnections === null || sessionConnections === void 0 ? void 0 : sessionConnections.includes(conf)) ? (react_1.default.createElement(material_1.IconButton, { onClick: () => breakConnection(conf, true) },
+                            react_1.default.createElement(Close_1.default, { color: "error" }))) : (react_1.default.createElement(material_1.Tooltip, { title: "Unable to delete connection in config file as non-admin user" },
+                            react_1.default.createElement(material_1.IconButton, null,
+                                react_1.default.createElement(Close_1.default, { color: "disabled" })))),
+                        name));
                 }),
                 !connections.length ? (react_1.default.createElement(material_1.Typography, null, "No connections found")) : null)),
         react_1.default.createElement(material_1.DialogActions, null,

package/dist/HierarchicalTrackSelectorWidget/components/ManageConnectionsDialog.js.map

@@ -1 +1 @@
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package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.d.ts

@@ -1,10 +1,10 @@
 /// <reference types="react" />
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { AbstractSessionModel } from '@jbrowse/core/util';
-declare function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConnection, }: {
+export declare function ellipses(slug: string): string;
+declare function ToggleConnectionDialog({ session, handleClose, breakConnection, }: {
     handleClose: () => void;
     session: AbstractSessionModel;
-    assemblyName: string;
     breakConnection: (arg: AnyConfigurationModel) => void;
 }): JSX.Element;
 declare const _default: typeof ToggleConnectionDialog;