@jbrowse/plugin-data-management 2.1.4 → 2.1.6

package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js

@@ -3,12 +3,17 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.ellipses = void 0;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
 const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 const mobx_react_1 = require("mobx-react");
 const configuration_1 = require("@jbrowse/core/configuration");
+function ellipses(slug) {
+    return slug.length > 20 ? `${slug.slice(0, 20)}...` : slug;
+}
+exports.ellipses = ellipses;
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     closeButton: {
         position: 'absolute',
@@ -21,16 +26,9 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
         margin: theme.spacing(4),
     },
 }));
-function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConnection, }) {
+function ToggleConnectionDialog({ session, handleClose, breakConnection, }) {
     const { classes } = useStyles();
     const { connections, connectionInstances: instances = [] } = session;
-    const assemblySpecificConnections = connections.filter(c => {
-        const configAssemblyNames = (0, configuration_1.readConfObject)(c, 'assemblyNames');
-        if (configAssemblyNames.length === 0) {
-            return true;
-        }
-        return configAssemblyNames.includes(assemblyName);
-    });
     return (react_1.default.createElement(material_1.Dialog, { open: true, onClose: handleClose, maxWidth: "lg" },
         react_1.default.createElement(material_1.DialogTitle, null,
             "Turn on/off connections",
@@ -39,8 +37,9 @@ function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConne
         react_1.default.createElement(material_1.DialogContent, null,
             react_1.default.createElement(material_1.Typography, null, "Use the checkbox to turn on/off connections"),
             react_1.default.createElement("div", { className: classes.connectionContainer },
-                assemblySpecificConnections.map(conf => {
+                connections.map(conf => {
                     const name = (0, configuration_1.readConfObject)(conf, 'name');
+                    const assemblyNames = (0, configuration_1.readConfObject)(conf, 'assemblyNames');
                     const found = instances.find(conn => name === conn.name);
                     return (react_1.default.createElement(material_1.FormControlLabel, { key: conf.connectionId, control: react_1.default.createElement(material_1.Checkbox, { checked: !!found, onChange: () => {
                                 var _a;
@@ -50,11 +49,9 @@ function ToggleConnectionDialog({ session, handleClose, assemblyName, breakConne
                                 else {
                                     (_a = session.makeConnection) === null || _a === void 0 ? void 0 : _a.call(session, conf);
                                 }
-                            }, color: "primary" }), label: name }));
+                            }, color: "primary" }), label: `${name} (${ellipses(assemblyNames.join(','))})` }));
                 }),
-                !assemblySpecificConnections.length ? (react_1.default.createElement(material_1.Typography, null,
-                    "No connections found for ",
-                    assemblyName)) : null)),
+                !connections.length ? (react_1.default.createElement(material_1.Typography, null, "No connections found")) : null)),
         react_1.default.createElement(material_1.DialogActions, null,
             react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), variant: "contained", color: "primary" }, "Close"))));
 }

package/dist/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ToggleConnectionsDialog.js","sourceRoot":"","sources":["../../../src/HierarchicalTrackSelectorWidget/components/ToggleConnectionsDialog.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,4CAUsB;AACtB,uCAA0C;AAC1C,sEAAiD;AACjD,2CAAqC;AACrC,+DAGoC;AAGpC,SAAgB,QAAQ,CAAC,IAAY;IACnC,OAAO,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAA;AAC5D,CAAC;AAFD,4BAEC;AAED,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IAED,mBAAmB,EAAE;QACnB,KAAK,EAAE,GAAG;QACV,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,sBAAsB,CAAC,EAC9B,OAAO,EACP,WAAW,EACX,eAAe,GAKhB;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,WAAW,EAAE,mBAAmB,EAAE,SAAS,GAAG,EAAE,EAAE,GAAG,OAAO,CAAA;IACpE,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,QAAQ,EAAC,IAAI;QAC9C,8BAAC,sBAAW;;YAEV,8BAAC,qBAAU,IACT,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE;gBAE5B,8BAAC,eAAS,OAAG,CACF,CACD;QACd,8BAAC,wBAAa;YACZ,8BAAC,qBAAU,sDAAyD;YACpE,uCAAK,SAAS,EAAE,OAAO,CAAC,mBAAmB;gBACxC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;oBACtB,MAAM,IAAI,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBACzC,MAAM,aAAa,GAAG,IAAA,8BAAc,EAAC,IAAI,EAAE,eAAe,CAAC,CAAA;oBAC3D,MAAM,KAAK,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,CAAC,CAAA;oBACxD,OAAO,CACL,8BAAC,2BAAgB,IACf,GAAG,EAAE,IAAI,CAAC,YAAY,EACtB,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,CAAC,CAAC,KAAK,EAChB,QAAQ,EAAE,GAAG,EAAE;;gCACb,IAAI,KAAK,EAAE;oCACT,eAAe,CAAC,IAAI,CAAC,CAAA;iCACtB;qCAAM;oCACL,MAAA,OAAO,CAAC,cAAc,wDAAG,IAAI,CAAC,CAAA;iCAC/B;4BACH,CAAC,EACD,KAAK,EAAC,SAAS,GACf,EAEJ,KAAK,EAAE,GAAG,IAAI,KAAK,QAAQ,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,GACvD,CACH,CAAA;gBACH,CAAC,CAAC;gBACD,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,CAAC,CACrB,8BAAC,qBAAU,+BAAkC,CAC9C,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,YAGR,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,sBAAsB,CAAC,CAAA"}

package/dist/HierarchicalTrackSelectorWidget/model.js

@@ -4,37 +4,27 @@ exports.generateHierarchy = void 0;
 const mobx_state_tree_1 = require("mobx-state-tree");
 const configuration_1 = require("@jbrowse/core/configuration");
 const util_1 = require("@jbrowse/core/util");
+const tracks_1 = require("@jbrowse/core/util/tracks");
 const mst_1 = require("@jbrowse/core/util/types/mst");
 function hasAnyOverlap(a1 = [], a2 = []) {
     return !!a1.find(value => a2.includes(value));
 }
-function passesFilter(filter, config) {
+function passesFilter(filter, config, session) {
     const categories = (0, configuration_1.readConfObject)(config, 'category');
     const filterLower = filter.toLowerCase();
-    return (getTrackName(config).toLowerCase().includes(filterLower) ||
+    return ((0, tracks_1.getTrackName)(config, session).toLowerCase().includes(filterLower) ||
         !!(categories === null || categories === void 0 ? void 0 : categories.filter(c => c.toLowerCase().includes(filterLower)).length));
 }
-function getTrackName(config) {
-    if (!config.trackId) {
-        throw new Error('not a track');
-    }
-    return ((0, configuration_1.readConfObject)(config, 'name') ||
-        `Reference sequence (${(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(config), 'displayName') ||
-            (0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(config), 'name')})`);
-}
 function filterTracks(tracks, self, assemblyName) {
     const { assemblyManager } = (0, util_1.getSession)(self);
-    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(self);
+    const { pluginManager } = (0, util_1.getEnv)(self);
     const assembly = assemblyManager.get(assemblyName);
     if (!assembly) {
         return [];
     }
+    const { allAliases } = assembly;
     return tracks
-        .filter(c => {
-        const trackConfAssemblies = (0, configuration_1.readConfObject)(c, 'assemblyNames');
-        const { allAliases } = assembly;
-        return hasAnyOverlap(allAliases, trackConfAssemblies);
-    })
+        .filter(c => hasAnyOverlap(allAliases, (0, configuration_1.readConfObject)(c, 'assemblyNames')))
         .filter(c => {
         const { displayTypes } = pluginManager.getViewType(self.view.type);
         const compatDisplays = displayTypes.map((d) => d.name);
@@ -45,8 +35,9 @@ function filterTracks(tracks, self, assemblyName) {
 function generateHierarchy(model, trackConfigurations, collapsed) {
     const hierarchy = { children: [] };
     const { filterText, view } = model;
+    const session = (0, util_1.getSession)(model);
     trackConfigurations
-        .filter(conf => passesFilter(filterText, conf))
+        .filter(conf => passesFilter(filterText, conf, session))
         .forEach(conf => {
         // copy the categories since this array can be mutated downstream
         const categories = [...((0, configuration_1.readConfObject)(conf, 'category') || [])];
@@ -80,7 +71,7 @@ function generateHierarchy(model, trackConfigurations, collapsed) {
         // using splice here tries to group leaf nodes above hierarchical nodes
         currLevel.children.splice(currLevel.children.findIndex(elt => elt.children.length), 0, {
             id: conf.trackId,
-            name: getTrackName(conf),
+            name: (0, tracks_1.getTrackName)(conf, session),
             conf,
             checked: !!tracks.find(f => f.configuration === conf),
             children: [],
@@ -175,21 +166,20 @@ function stateTreeFactory(pluginManager) {
             // eslint-disable-next-line @typescript-eslint/no-explicit-any
             self, self.trackConfigurations(assemblyName), self.collapsed);
             const session = (0, util_1.getSession)(self);
-            const { connections, connectionInstances } = session;
-            const conns = (connectionInstances === null || connectionInstances === void 0 ? void 0 : connectionInstances.filter(c => {
-                const names = (0, configuration_1.getConf)(c, 'assemblyNames');
-                return names.length === 0 ? true : names.includes(assemblyName);
-            }).map((conn, index) => {
-                const c = connections[index];
-                return {
-                    id: c.connectionId,
-                    name: (0, configuration_1.readConfObject)(c, 'name'),
-                    children: this.connectionHierarchy(assemblyName, conn),
+            const { connectionInstances } = session;
+            const { assemblyManager } = (0, util_1.getSession)(self);
+            const assembly = assemblyManager.get(assemblyName);
+            const conns = (assembly &&
+                (connectionInstances === null || connectionInstances === void 0 ? void 0 : connectionInstances.filter(c => hasAnyOverlap(assembly.allAliases, (0, configuration_1.getConf)(c, 'assemblyNames'))).map(c => ({
+                    // @ts-ignore
+                    id: (0, mobx_state_tree_1.getSnapshot)(c).configuration,
+                    name: (0, configuration_1.getConf)(c, 'name'),
+                    children: this.connectionHierarchy(assemblyName, c),
                     state: {
                         expanded: true,
                     },
-                };
-            })) || [];
+                })))) ||
+                [];
             return {
                 name: 'Root',
                 id: 'Root',

package/dist/HierarchicalTrackSelectorWidget/model.js.map

@@ -1 +1 @@
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+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/HierarchicalTrackSelectorWidget/model.ts"],"names":[],"mappings":";;;AAAA,qDAA8D;AAC9D,+DAIoC;AACpC,6CAA6E;AAC7E,sDAAwD;AACxD,sDAAwD;AAGxD,SAAS,aAAa,CAAI,KAAU,EAAE,EAAE,KAAU,EAAE;IAClD,OAAO,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;AAC/C,CAAC;AAED,SAAS,YAAY,CACnB,MAAc,EACd,MAA6B,EAC7B,OAA6B;IAE7B,MAAM,UAAU,GAAG,IAAA,8BAAc,EAAC,MAAM,EAAE,UAAU,CAAyB,CAAA;IAC7E,MAAM,WAAW,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;IACxC,OAAO,CACL,IAAA,qBAAY,EAAC,MAAM,EAAE,OAAO,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;QACjE,CAAC,CAAC,CAAA,UAAU,aAAV,UAAU,uBAAV,UAAU,CAAE,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC,EAAE,MAAM,CAAA,CACxE,CAAA;AACH,CAAC;AAWD,SAAS,YAAY,CACnB,MAA+B,EAC/B,IAAgC,EAChC,YAAoB;IAEpB,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;IAC5C,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,IAAI,CAAC,CAAA;IACtC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,IAAI,CAAC,QAAQ,EAAE;QACb,OAAO,EAAE,CAAA;KACV;IACD,MAAM,EAAE,UAAU,EAAE,GAAG,QAAQ,CAAA;IAC/B,OAAO,MAAM;SACV,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,aAAa,CAAC,UAAU,EAAE,IAAA,8BAAc,EAAC,CAAC,EAAE,eAAe,CAAC,CAAC,CAAC;SAC1E,MAAM,CAAC,CAAC,CAAC,EAAE;QACV,MAAM,EAAE,YAAY,EAAE,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAClE,MAAM,cAAc,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACxE,MAAM,aAAa,GAAG,CAAC,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAmB,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAA;QACrE,OAAO,aAAa,CAAC,cAAc,EAAE,aAAa,CAAC,CAAA;IACrD,CAAC,CAAC,CAAA;AACN,CAAC;AAED,SAAgB,iBAAiB,CAC/B,KAAqC,EACrC,mBAA4C,EAC5C,SAAwD;IAExD,MAAM,SAAS,GAAG,EAAE,QAAQ,EAAE,EAAgB,EAAc,CAAA;IAC5D,MAAM,EAAE,UAAU,EAAE,IAAI,EAAE,GAAG,KAAK,CAAA;IAClC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEjC,mBAAmB;SAChB,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,YAAY,CAAC,UAAU,EAAE,IAAI,EAAE,OAAO,CAAC,CAAC;SACvD,OAAO,CAAC,IAAI,CAAC,EAAE;QACd,iEAAiE;QACjE,MAAM,UAAU,GAAG,CAAC,GAAG,CAAC,IAAA,8BAAc,EAAC,IAAI,EAAE,UAAU,CAAC,IAAI,EAAE,CAAC,CAAC,CAAA;QAEhE,uEAAuE;QACvE,kEAAkE;QAClE,0BAA0B;QAC1B,IAAI,IAAI,CAAC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAC,EAAE;YACzC,UAAU,CAAC,OAAO,CAAC,iBAAiB,CAAC,CAAA;SACtC;QAED,IAAI,SAAS,GAAG,SAAS,CAAA;QAEzB,wDAAwD;QACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,MAAM,QAAQ,GAAG,UAAU,CAAC,CAAC,CAAC,CAAA;YAC9B,MAAM,GAAG,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,QAAQ,CAAC,CAAA;YAC7D,MAAM,EAAE,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAA;YAC/C,IAAI,CAAC,GAAG,EAAE;gBACR,MAAM,CAAC,GAAG;oBACR,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,QAAQ;oBACd,EAAE;oBACF,eAAe,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC;iBACpC,CAAA;gBACD,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;gBAC1B,SAAS,GAAG,CAAC,CAAA;aACd;iBAAM;gBACL,SAAS,GAAG,GAAG,CAAA;aAChB;SACF;QACD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAoD,CAAA;QAExE,uEAAuE;QACvE,SAAS,CAAC,QAAQ,CAAC,MAAM,CACvB,SAAS,CAAC,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,EACxD,CAAC,EACD;YACE,EAAE,EAAE,IAAI,CAAC,OAAO;YAChB,IAAI,EAAE,IAAA,qBAAY,EAAC,IAAI,EAAE,OAAO,CAAC;YACjC,IAAI;YACJ,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,KAAK,IAAI,CAAC;YACrD,QAAQ,EAAE,EAAE;SACb,CACF,CAAA;IACH,CAAC,CAAC,CAAA;IAEJ,OAAO,SAAS,CAAC,QAAQ,CAAA;AAC3B,CAAC;AA3DD,8CA2DC;AAED,SAAwB,gBAAgB,CAAC,aAA4B;IACnE,OAAO,uBAAK;SACT,KAAK,CAAC,iCAAiC,EAAE;QACxC,EAAE,EAAE,eAAS;QACb,IAAI,EAAE,uBAAK,CAAC,OAAO,CAAC,iCAAiC,CAAC;QACtD,SAAS,EAAE,uBAAK,CAAC,GAAG,CAAC,uBAAK,CAAC,OAAO,CAAC;QACnC,UAAU,EAAE,EAAE;QACd,IAAI,EAAE,uBAAK,CAAC,aAAa,CACvB,aAAa,CAAC,gBAAgB,CAAC,MAAM,EAAE,YAAY,CAAC,CACrD;KACF,CAAC;SACD,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;QACf,SAAS,EAAE,EAA6B;KACzC,CAAC,CAAC;SACF,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChB,cAAc,CAAC,GAA4B;YACzC,IAAI,CAAC,SAAS,GAAG,CAAC,GAAG,IAAI,CAAC,SAAS,EAAE,GAAG,GAAG,CAAC,CAAA;QAC9C,CAAC;QACD,mBAAmB,CAAC,GAA4B;YAC9C,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;QAC/D,CAAC;QACD,cAAc;YACZ,IAAI,CAAC,SAAS,GAAG,EAAE,CAAA;QACrB,CAAC;QACD,OAAO,CAAC,IAAa;YACnB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAClB,CAAC;QACD,cAAc,CAAC,QAAgB;YAC7B,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAA;QAC7D,CAAC;QACD,eAAe;YACb,IAAI,CAAC,UAAU,GAAG,EAAE,CAAA;QACtB,CAAC;QACD,aAAa,CAAC,OAAe;YAC3B,IAAI,CAAC,UAAU,GAAG,OAAO,CAAA;QAC3B,CAAC;KACF,CAAC,CAAC;SACF,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACd,kBAAkB,CAAC,YAAoB;YACrC,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;YAClD,MAAM,SAAS,GAAG,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,aAAa,CAAC,QAAQ,CAAA;YAClD,MAAM,QAAQ,GAAG,aAAa,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAC1D,IAAI,CAAC,SAAS,EAAE;gBACd,OAAO,SAAS,CAAA;aACjB;YACD,KAAK,MAAM,OAAO,IAAI,SAAS,CAAC,QAAQ,EAAE;gBACxC,IAAI,QAAQ,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,OAAO,CAAC,IAAI,CAAC,EAAE;oBAC5D,OAAO,SAAS,CAAA;iBACjB;aACF;QACH,CAA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package/dist/PluginStoreWidget/components/PluginCard.js

@@ -57,7 +57,7 @@ const useStyles = (0, mui_1.makeStyles)()(() => ({
 function PluginCard({ plugin, model, adminMode, }) {
     const { classes } = useStyles();
     const session = (0, util_1.getSession)(model);
-    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
+    const { pluginManager } = (0, util_1.getEnv)(model);
     const isInstalled = Boolean(pluginManager.runtimePluginDefinitions.find(def => def.url === plugin.url));
     const [tempDisabled, setTempDisabled] = (0, react_1.useState)(false);
     const disableButton = isInstalled || tempDisabled;

package/dist/PluginStoreWidget/components/PluginCard.js.map

@@ -1 +1 @@
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+{"version":3,"file":"PluginCard.js","sourceRoot":"","sources":["../../../src/PluginStoreWidget/components/PluginCard.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,2CAAqC;AACrC,qDAA2C;AAC3C,6CAAuD;AACvD,oDAGiC;AACjC,4CAOsB;AACtB,uCAA0C;AAE1C,QAAQ;AACR,wEAAmD;AACnD,kEAA6C;AAC7C,sEAAiD;AAGjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,IAAI,EAAE;QACJ,MAAM,EAAE,KAAK;KACd;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,OAAO;QACnB,WAAW,EAAE,OAAO;KACrB;IACD,IAAI,EAAE;QACJ,UAAU,EAAE,GAAG;KAChB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,WAAW;KACpB;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,UAAU,CAAC,EAClB,MAAM,EACN,KAAK,EACL,SAAS,GAKV;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,WAAW,GAAG,OAAO,CACzB,aAAa,CAAC,wBAAwB,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,KAAK,MAAM,CAAC,GAAG,CAAC,CAC3E,CAAA;IACD,MAAM,CAAC,YAAY,EAAE,eAAe,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvD,MAAM,aAAa,GAAG,WAAW,IAAI,YAAY,CAAA;IAEjD,8DAA8D;IAC9D,MAAM,SAAS,GAAG,IAAA,2BAAS,EAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC1C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,CAAA;IAE7B,OAAO,CACL,8BAAC,eAAI,IAAC,OAAO,EAAC,UAAU,EAAC,GAAG,EAAE,MAAM,CAAC,IAAI,EAAE,SAAS,EAAE,OAAO,CAAC,IAAI;QAChE,8BAAC,sBAAW;YACV,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;gBAC/B,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI;oBACtB,8BAAC,eAAI,IACH,IAAI,EAAE,GAAG,MAAM,CAAC,QAAQ,SAAS,EACjC,MAAM,EAAC,QAAQ,EACf,GAAG,EAAC,UAAU,IAEb,MAAM,CAAC,IAAI,CACP,CACI,CACT;YACN,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;gBAC/B,8BAAC,gBAAU,IAAC,KAAK,EAAE,EAAE,WAAW,EAAE,OAAO,EAAE,GAAI;gBAC/C,8BAAC,qBAAU,QAAE,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAc,CAChD;YACN,8BAAC,qBAAU,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,mBAA2B;YAC9D,8BAAC,qBAAU,QAAE,MAAM,CAAC,WAAW,CAAc,CACjC;QACd,8BAAC,sBAAW;YACV,8BAAC,iBAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,QAAQ,EAAE,aAAa,EACvB,SAAS,EAAE,WAAW,CAAC,CAAC,CAAC,8BAAC,eAAS,OAAG,CAAC,CAAC,CAAC,8BAAC,aAAO,OAAG,EACpD,OAAO,EAAE,GAAG,EAAE;oBACZ,IAAI,SAAS,EAAE;wBACb,OAAO,CAAC,SAAS,CAAC,EAAE,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,CAAC,CAAA;qBAC1D;yBAAM,IAAI,IAAA,mCAA2B,EAAC,OAAO,CAAC,EAAE;wBAC/C,OAAO,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAA;qBACjC;oBACD,eAAe,CAAC,IAAI,CAAC,CAAA;gBACvB,CAAC,IAEA,WAAW,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,SAAS,CAC/B,CACG,CACT,CACR,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}

package/dist/PluginStoreWidget/index.d.ts

@@ -1,2 +1,2 @@
-export { default as stateModelFactory } from "./model";
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as stateModelFactory } from './model';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/dist/PluginStoreWidget/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.js"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/PluginStoreWidget/index.ts"],"names":[],"mappings":";;;;;;AAAA,+DAAiE;AAEjE,iCAAsD;AAA7C,2HAAA,OAAO,OAAqB;AACxB,QAAA,YAAY,GAAG,IAAA,mCAAmB,EAAC,mBAAmB,EAAE,EAAE,CAAC,CAAA"}

package/dist/ucsc-trackhub/model.d.ts

@@ -1,14 +1,26 @@
 export default function UCSCTrackHubConnection(pluginManager: any): import("mobx-state-tree").IModelType<{
     name: import("mobx-state-tree").ISimpleType<string>;
-    tracks: import("mobx-state-tree").IArrayType<any>;
+    tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
 } & {
     configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
     type: import("mobx-state-tree").ISimpleType<"UCSCTrackHubConnection">;
 }, {
     afterAttach(): void;
-    addTrackConf(trackConf: any): any;
-    addTrackConfs(trackConfs: any): any[];
-    setTrackConfs(trackConfs: any): import("mobx-state-tree").IMSTArray<any> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<any>>;
+    addTrackConf(trackConf: {
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>): any;
+    addTrackConfs(trackConfs: ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): any[];
+    setTrackConfs(trackConfs: ({
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any;
+    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[]): import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyModelType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>>;
     clear(): void;
 } & {
     connect(): void;

package/dist/ucsc-trackhub/ucscTrackHub.d.ts

@@ -1,6 +1,6 @@
-export function fetchHubFile(hubFileLocation: any): Promise<any>;
-export function fetchGenomesFile(genomesFileLocation: any): Promise<any>;
-export function fetchTrackDbFile(trackDbFileLocation: any): Promise<any>;
+export function fetchHubFile(hubFileLocation: any): Promise<import("@gmod/ucsc-hub").HubFile>;
+export function fetchGenomesFile(genomesFileLocation: any): Promise<import("@gmod/ucsc-hub").GenomesFile>;
+export function fetchTrackDbFile(trackDbFileLocation: any): Promise<import("@gmod/ucsc-hub").TrackDbFile>;
 export function generateTracks(trackDb: any, trackDbFileLocation: any, assemblyName: any, sequenceAdapter: any): any[];
 export { ucscAssemblies };
 import ucscAssemblies from "./ucscAssemblies";

package/esm/AddConnectionWidget/components/AddConnectionWidget.d.ts

@@ -1,9 +1,6 @@
-declare function _default({ model }: {
-    model: any;
+/// <reference types="react" />
+declare function AddConnectionWidget({ model }: {
+    model: unknown;
 }): JSX.Element;
-declare namespace _default {
-    namespace propTypes {
-        const model: import("prop-types").Validator<any>;
-    }
-}
+declare const _default: typeof AddConnectionWidget;
 export default _default;

package/esm/AddConnectionWidget/components/AddConnectionWidget.js

@@ -1,9 +1,8 @@
 import React, { useState } from 'react';
-import { getSession } from '@jbrowse/core/util';
+import { getSession, getEnv } from '@jbrowse/core/util';
 import { Button, Step, StepContent, StepLabel, Stepper, Typography, } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-import { observer, PropTypes as MobxPropTypes } from 'mobx-react';
-import { getEnv } from 'mobx-state-tree';
+import { observer } from 'mobx-react';
 // locals
 import ConfigureConnection from './ConfigureConnection';
 import ConnectionTypeSelect from './ConnectionTypeSelect';
@@ -24,25 +23,25 @@ const useStyles = makeStyles()(theme => ({
 }));
 const steps = ['Select a Connection Type', 'Configure Connection'];
 function AddConnectionWidget({ model }) {
-    const [connectionType, setConnectionType] = useState({});
-    const [configModel, setConfigModel] = useState({});
-    const [configModelReady, setConfigModelReady] = useState(true);
+    const [connectionType, setConnectionType] = useState();
+    const [configModel, setConfigModel] = useState();
     const [activeStep, setActiveStep] = useState(0);
     const { classes } = useStyles();
     const session = getSession(model);
     const { pluginManager } = getEnv(session);
-    function handleSetConnectionType(newConnectionType) {
-        setConnectionType(newConnectionType);
-        setConfigModel(newConnectionType.configSchema.create({
-            connectionId: `${newConnectionType.name}-${Date.now()}`,
-        }, getEnv(model)));
-    }
     function stepContent() {
         switch (activeStep) {
             case 0:
-                return (React.createElement(ConnectionTypeSelect, { connectionTypeChoices: pluginManager.getElementTypesInGroup('connection'), connectionType: connectionType, setConnectionType: handleSetConnectionType }));
+                return (React.createElement(ConnectionTypeSelect, { connectionTypeChoices: pluginManager.getElementTypesInGroup('connection'), connectionType: connectionType, setConnectionType: c => {
+                        setConnectionType(c);
+                        if (c) {
+                            setConfigModel(c.configSchema.create({
+                                connectionId: `${c.name}-${Date.now()}`,
+                            }, getEnv(model)));
+                        }
+                    } }));
             case 1:
-                return (React.createElement(ConfigureConnection, { connectionType: connectionType, model: configModel, setModelReady: setConfigModelReady }));
+                return connectionType && configModel ? (React.createElement(ConfigureConnection, { connectionType: connectionType, model: configModel, session: session })) : null;
             default:
                 return React.createElement(Typography, null, "Unknown step");
         }
@@ -60,15 +59,13 @@ function AddConnectionWidget({ model }) {
     }
     function handleFinish() {
         const connectionConf = session.addConnectionConf(configModel);
-        session.makeConnection(connectionConf);
+        if (session.makeConnection) {
+            session.makeConnection(connectionConf);
+        }
         session.hideWidget(model);
     }
     function checkNextEnabled() {
-        if ((activeStep === 0 && connectionType.name) ||
-            (activeStep === 1 && configModel && configModelReady)) {
-            return true;
-        }
-        return false;
+        return ((activeStep === 0 && connectionType) || (activeStep === 1 && configModel));
     }
     return (React.createElement("div", { className: classes.root },
         React.createElement(Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical" }, steps.map(label => (React.createElement(Step, { key: label },
@@ -79,8 +76,5 @@ function AddConnectionWidget({ model }) {
                     React.createElement(Button, { disabled: activeStep === 0, onClick: handleBack, className: classes.button }, "Back"),
                     React.createElement(Button, { disabled: !checkNextEnabled(), variant: "contained", color: "primary", onClick: handleNext, className: classes.button, "data-testid": "addConnectionNext" }, activeStep === steps.length - 1 ? 'Connect' : 'Next')))))))));
 }
-AddConnectionWidget.propTypes = {
-    model: MobxPropTypes.observableObject.isRequired,
-};
 export default observer(AddConnectionWidget);
 //# sourceMappingURL=AddConnectionWidget.js.map

package/esm/AddConnectionWidget/components/AddConnectionWidget.js.map

@@ -1 +1 @@
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package/esm/AddConnectionWidget/components/ConfigureConnection.d.ts

@@ -1,2 +1,10 @@
+/// <reference types="react" />
+import { ConnectionType } from '@jbrowse/core/pluggableElementTypes';
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { AbstractSessionModel } from '@jbrowse/core/util';
+declare const ConfigureConnection: (props: {
+    connectionType: ConnectionType;
+    model: AnyConfigurationModel;
+    session: AbstractSessionModel;
+}) => JSX.Element;
 export default ConfigureConnection;
-declare function ConfigureConnection(props: any): JSX.Element;

package/esm/AddConnectionWidget/components/ConfigureConnection.js

@@ -1,11 +1,11 @@
 import React, { Suspense } from 'react';
 import { ConfigurationEditor } from '@jbrowse/plugin-config';
 import { observer } from 'mobx-react';
-const ConfigureConnection = observer(props => {
-    const { connectionType, model, setModelReady } = props;
+const ConfigureConnection = observer((props) => {
+    const { connectionType, model, session } = props;
     const ConfigEditorComponent = connectionType.configEditorComponent || ConfigurationEditor;
     return (React.createElement(Suspense, { fallback: React.createElement("div", null, "Loading...") },
-        React.createElement(ConfigEditorComponent, { model: { target: model }, setModelReady: setModelReady })));
+        React.createElement(ConfigEditorComponent, { model: { target: model }, session: session })));
 });
 export default ConfigureConnection;
 //# sourceMappingURL=ConfigureConnection.js.map

package/esm/AddConnectionWidget/components/ConfigureConnection.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ConfigureConnection.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConfigureConnection.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AACvC,OAAO,EAAE,mBAAmB,EAAE,MAAM,wBAAwB,CAAA;AAC5D,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAKrC,MAAM,mBAAmB,GAAG,QAAQ,CAClC,CAAC,KAIA,EAAE,EAAE;IACH,MAAM,EAAE,cAAc,EAAE,KAAK,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IAChD,MAAM,qBAAqB,GACzB,cAAc,CAAC,qBAAqB,IAAI,mBAAmB,CAAA;IAE7D,OAAO,CACL,oBAAC,QAAQ,IAAC,QAAQ,EAAE,8CAAqB;QACvC,oBAAC,qBAAqB,IAAC,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,OAAO,EAAE,OAAO,GAAI,CAC5D,CACZ,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,mBAAmB,CAAA"}

package/esm/AddConnectionWidget/components/ConnectionTypeSelect.d.ts

@@ -1,8 +1,8 @@
 /// <reference types="react" />
-import ConnectionType from '@jbrowse/core/pluggableElementTypes/ConnectionType';
+import { ConnectionType } from '@jbrowse/core/pluggableElementTypes';
 declare function ConnectionTypeSelect(props: {
     connectionTypeChoices: ConnectionType[];
-    connectionType: ConnectionType;
-    setConnectionType: Function;
-}): JSX.Element | null;
+    connectionType?: ConnectionType;
+    setConnectionType: (c?: ConnectionType) => void;
+}): JSX.Element;
 export default ConnectionTypeSelect;

package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js

@@ -1,24 +1,18 @@
 import React, { useEffect } from 'react';
 import { IconButton, MenuItem, TextField } from '@mui/material';
+// icons
 import OpenInNewIcon from '@mui/icons-material/OpenInNew';
 function ConnectionTypeSelect(props) {
     const { connectionTypeChoices, connectionType, setConnectionType } = props;
     useEffect(() => {
-        if (!connectionType.name) {
+        if (!connectionType) {
             setConnectionType(connectionTypeChoices[0]);
         }
     });
-    function handleChange(event) {
-        setConnectionType(connectionTypeChoices.find((connectionTypeChoice) => connectionTypeChoice.name === event.target.value));
-    }
-    if (!connectionType.name) {
-        return null;
-    }
-    return (React.createElement("form", { autoComplete: "off" },
-        React.createElement(TextField, { value: connectionType.name, label: "connectionType", helperText: connectionType.description ? (React.createElement(React.Fragment, null,
-                connectionType.description,
-                connectionType.url ? (React.createElement(IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank", color: "secondary" },
-                    React.createElement(OpenInNewIcon, null))) : null)) : null, select: true, fullWidth: true, onChange: handleChange, variant: "outlined" }, connectionTypeChoices.map((connectionTypeChoice) => (React.createElement(MenuItem, { key: connectionTypeChoice.name, value: connectionTypeChoice.name }, connectionTypeChoice.displayName || connectionTypeChoice.name))))));
+    return (React.createElement("form", { autoComplete: "off" }, connectionType ? (React.createElement(TextField, { value: connectionType.name, label: "connectionType", helperText: connectionType.description ? (React.createElement(React.Fragment, null,
+            connectionType.description,
+            connectionType.url ? (React.createElement(IconButton, { href: connectionType.url, rel: "noopener noreferrer", target: "_blank", color: "secondary" },
+                React.createElement(OpenInNewIcon, null))) : null)) : null, select: true, fullWidth: true, onChange: event => setConnectionType(connectionTypeChoices.find(c => c.name === event.target.value)), variant: "outlined" }, connectionTypeChoices.map(c => (React.createElement(MenuItem, { key: c.name, value: c.name }, c.displayName || c.name))))) : null));
 }
 export default ConnectionTypeSelect;
 //# sourceMappingURL=ConnectionTypeSelect.js.map

package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ConnectionTypeSelect.js","sourceRoot":"","sources":["../../../src/AddConnectionWidget/components/ConnectionTypeSelect.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,OAAO,CAAA;AACxC,OAAO,EAAE,UAAU,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,eAAe,CAAA;AAG/D,QAAQ;AACR,OAAO,aAAa,MAAM,+BAA+B,CAAA;AAEzD,SAAS,oBAAoB,CAAC,KAI7B;IACC,MAAM,EAAE,qBAAqB,EAAE,cAAc,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAE1E,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,CAAC,cAAc,EAAE;YACnB,iBAAiB,CAAC,qBAAqB,CAAC,CAAC,CAAC,CAAC,CAAA;SAC5C;IACH,CAAC,CAAC,CAAA;IAEF,OAAO,CACL,8BAAM,YAAY,EAAC,KAAK,IACrB,cAAc,CAAC,CAAC,CAAC,CAChB,oBAAC,SAAS,IACR,KAAK,EAAE,cAAc,CAAC,IAAI,EAC1B,KAAK,EAAC,gBAAgB,EACtB,UAAU,EACR,cAAc,CAAC,WAAW,CAAC,CAAC,CAAC,CAC3B;YACG,cAAc,CAAC,WAAW;YAC1B,cAAc,CAAC,GAAG,CAAC,CAAC,CAAC,CACpB,oBAAC,UAAU,IACT,IAAI,EAAE,cAAc,CAAC,GAAG,EACxB,GAAG,EAAC,qBAAqB,EACzB,MAAM,EAAC,QAAQ,EACf,KAAK,EAAC,WAAW;gBAEjB,oBAAC,aAAa,OAAG,CACN,CACd,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,EAEV,MAAM,QACN,SAAS,QACT,QAAQ,EAAE,KAAK,CAAC,EAAE,CAChB,iBAAiB,CACf,qBAAqB,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,CAC/D,EAEH,OAAO,EAAC,UAAU,IAEjB,qBAAqB,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAC9B,oBAAC,QAAQ,IAAC,GAAG,EAAE,CAAC,CAAC,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,IAAI,IACjC,CAAC,CAAC,WAAW,IAAI,CAAC,CAAC,IAAI,CACf,CACZ,CAAC,CACQ,CACb,CAAC,CAAC,CAAC,IAAI,CACH,CACR,CAAA;AACH,CAAC;AAED,eAAe,oBAAoB,CAAA"}

package/esm/AddConnectionWidget/index.d.ts

@@ -1,2 +1,2 @@
-export { default as stateModel } from "./model";
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export { default as stateModel } from './model';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;

package/esm/AddConnectionWidget/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE,OAAO,EAAE,OAAO,IAAI,UAAU,EAAE,MAAM,SAAS,CAAA;AAC/C,MAAM,CAAC,MAAM,YAAY,GAAG,mBAAmB,CAAC,qBAAqB,EAAE,EAAE,CAAC,CAAA"}

package/esm/AddConnectionWidget/model.js.map

@@ -1 +1 @@
-{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.js"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AACvC,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAExD,eAAe,KAAK,CAAC,KAAK,CAAC,oBAAoB,EAAE;IAC/C,EAAE,EAAE,SAAS;IACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;CAC3C,CAAC,CAAA"}
+{"version":3,"file":"model.js","sourceRoot":"","sources":["../../src/AddConnectionWidget/model.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,iBAAiB,CAAA;AACvC,OAAO,EAAE,SAAS,EAAE,MAAM,8BAA8B,CAAA;AAExD,eAAe,KAAK,CAAC,KAAK,CAAC,oBAAoB,EAAE;IAC/C,EAAE,EAAE,SAAS;IACb,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,qBAAqB,CAAC;CAC3C,CAAC,CAAA"}

package/esm/AddTrackWidget/components/AddTrackWidget.js

@@ -1,8 +1,7 @@
 import React from 'react';
 import { observer } from 'mobx-react';
 import { FormControl, FormHelperText, Select, MenuItem } from '@mui/material';
-import { useLocalStorage } from '@jbrowse/core/util';
-import { getEnv } from 'mobx-state-tree';
+import { getEnv, useLocalStorage } from '@jbrowse/core/util';
 import DefaultAddTrackWorkflow from './DefaultAddTrackWorkflow';
 function AddTrackSelector({ model }) {
     const [val, setVal] = useLocalStorage('trackSelector-choice', 'Default');

package/esm/AddTrackWidget/components/AddTrackWidget.js.map

@@ -1 +1 @@
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+{"version":3,"file":"AddTrackWidget.js","sourceRoot":"","sources":["../../../src/AddTrackWidget/components/AddTrackWidget.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,WAAW,EAAE,cAAc,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAA;AAE7E,OAAO,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM,oBAAoB,CAAA;AAI5D,OAAO,uBAAuB,MAAM,2BAA2B,CAAA;AAE/D,SAAS,gBAAgB,CAAC,EAAE,KAAK,EAA4B;IAC3D,MAAM,CAAC,GAAG,EAAE,MAAM,CAAC,GAAG,eAAe,CAAC,sBAAsB,EAAE,SAAS,CAAC,CAAA;IACxE,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,OAAO,GAAG,aAAa,CAAC,sBAAsB,CAClD,oBAAoB,CACK,CAAA;IAC3B,MAAM,YAAY,GAAG;QACnB,OAAO,EAAE,uBAAuB;QAChC,GAAG,MAAM,CAAC,WAAW,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;KACX,CAAA;IAE1D,8CAA8C;IAC9C,MAAM,IAAI,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAA;IAChD,MAAM,SAAS,GAAG,YAAY,CAAC,IAAI,CAAC,CAAA;IACpC,OAAO,CACL;QACE,oBAAC,WAAW;YACV,oBAAC,MAAM,IAAC,KAAK,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAC/D,MAAM,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAClC,oBAAC,QAAQ,IAAC,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,IACvB,CAAC,CACO,CACZ,CAAC,CACK;YACT,oBAAC,cAAc,qCAA4C,CAC/C;QAEd,+BAAM;QACN,oBAAC,SAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAC1B,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,gBAAgB,CAAC,CAAA"}

package/esm/AddTrackWidget/components/ConfirmTrack.js

@@ -1,14 +1,13 @@
 import React, { useEffect, useState } from 'react';
-import { readConfObject } from '@jbrowse/core/configuration';
-import { supportedIndexingAdapters, getSession, isElectron, } from '@jbrowse/core/util';
 import { Card, CardContent, Checkbox, FormControl, FormControlLabel, IconButton, InputLabel, InputAdornment, ListSubheader, Link, List, ListItem, MenuItem, Paper, TextField, Typography, } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
+import { readConfObject } from '@jbrowse/core/configuration';
+import { supportedIndexingAdapters, getSession, getEnv, isElectron, } from '@jbrowse/core/util';
+import { observer } from 'mobx-react';
+import { UNKNOWN } from '@jbrowse/core/util/tracks';
 // icons
 import DeleteIcon from '@mui/icons-material/Delete';
 import AddIcon from '@mui/icons-material//Add';
-import { observer } from 'mobx-react';
-import { getEnv } from 'mobx-state-tree';
-import { UNKNOWN } from '@jbrowse/core/util/tracks';
 const useStyles = makeStyles()(theme => ({
     spacing: {
         marginBottom: theme.spacing(3),