@jbrowse/plugin-arc 3.6.5 → 4.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (79) hide show
  1. package/esm/ArcRenderer/ArcRendering.d.ts +1 -1
  2. package/esm/ArcRenderer/ArcRendering.js +31 -54
  3. package/esm/ArcRenderer/configSchema.d.ts +3 -3
  4. package/esm/ArcRenderer/configSchema.js +1 -1
  5. package/esm/ArcRenderer/index.js +4 -4
  6. package/esm/ArcTooltip.d.ts +1 -1
  7. package/esm/ArcTooltip.js +1 -1
  8. package/esm/LinearArcDisplay/configSchema.d.ts +4 -4
  9. package/esm/LinearArcDisplay/configSchema.js +1 -1
  10. package/esm/LinearArcDisplay/index.js +2 -2
  11. package/esm/LinearArcDisplay/model.d.ts +963 -94
  12. package/esm/LinearArcDisplay/model.js +4 -7
  13. package/esm/LinearPairedArcDisplay/afterAttach.d.ts +1 -1
  14. package/esm/LinearPairedArcDisplay/afterAttach.js +2 -2
  15. package/esm/LinearPairedArcDisplay/components/Arcs.d.ts +1 -1
  16. package/esm/LinearPairedArcDisplay/components/Arcs.js +9 -11
  17. package/esm/LinearPairedArcDisplay/components/BaseDisplayComponent.d.ts +1 -1
  18. package/esm/LinearPairedArcDisplay/components/BaseDisplayComponent.js +7 -38
  19. package/esm/LinearPairedArcDisplay/components/ErrorActions.d.ts +4 -0
  20. package/esm/LinearPairedArcDisplay/components/ErrorActions.js +20 -0
  21. package/esm/LinearPairedArcDisplay/components/ErrorMessage.d.ts +5 -0
  22. package/esm/LinearPairedArcDisplay/components/ErrorMessage.js +9 -0
  23. package/esm/LinearPairedArcDisplay/components/LoadingBar.d.ts +5 -0
  24. package/esm/LinearPairedArcDisplay/components/LoadingBar.js +23 -0
  25. package/esm/LinearPairedArcDisplay/components/ReactComponent.d.ts +1 -1
  26. package/esm/LinearPairedArcDisplay/components/ReactComponent.js +3 -3
  27. package/esm/LinearPairedArcDisplay/components/util.js +6 -8
  28. package/esm/LinearPairedArcDisplay/configSchema.d.ts +3 -3
  29. package/esm/LinearPairedArcDisplay/fetchChains.d.ts +2 -2
  30. package/esm/LinearPairedArcDisplay/fetchChains.js +3 -1
  31. package/esm/LinearPairedArcDisplay/index.js +5 -4
  32. package/esm/LinearPairedArcDisplay/model.d.ts +143 -31
  33. package/esm/LinearPairedArcDisplay/model.js +4 -5
  34. package/esm/LinearPairedArcDisplay/renderSvg.d.ts +1 -1
  35. package/esm/LinearPairedArcDisplay/renderSvg.js +1 -1
  36. package/esm/LinearPairedArcDisplay/util.d.ts +1 -1
  37. package/esm/LinearPairedArcDisplay/util.js +3 -5
  38. package/esm/index.js +9 -12
  39. package/package.json +27 -31
  40. package/dist/ArcRenderer/ArcRenderer.d.ts +0 -3
  41. package/dist/ArcRenderer/ArcRenderer.js +0 -9
  42. package/dist/ArcRenderer/ArcRendering.d.ts +0 -15
  43. package/dist/ArcRenderer/ArcRendering.js +0 -120
  44. package/dist/ArcRenderer/configSchema.d.ts +0 -39
  45. package/dist/ArcRenderer/configSchema.js +0 -44
  46. package/dist/ArcRenderer/index.d.ts +0 -2
  47. package/dist/ArcRenderer/index.js +0 -17
  48. package/dist/ArcTooltip.d.ts +0 -4
  49. package/dist/ArcTooltip.js +0 -17
  50. package/dist/LinearArcDisplay/configSchema.d.ts +0 -31
  51. package/dist/LinearArcDisplay/configSchema.js +0 -14
  52. package/dist/LinearArcDisplay/index.d.ts +0 -2
  53. package/dist/LinearArcDisplay/index.js +0 -21
  54. package/dist/LinearArcDisplay/model.d.ts +0 -327
  55. package/dist/LinearArcDisplay/model.js +0 -91
  56. package/dist/LinearPairedArcDisplay/afterAttach.d.ts +0 -2
  57. package/dist/LinearPairedArcDisplay/afterAttach.js +0 -10
  58. package/dist/LinearPairedArcDisplay/components/Arcs.d.ts +0 -6
  59. package/dist/LinearPairedArcDisplay/components/Arcs.js +0 -106
  60. package/dist/LinearPairedArcDisplay/components/BaseDisplayComponent.d.ts +0 -6
  61. package/dist/LinearPairedArcDisplay/components/BaseDisplayComponent.js +0 -83
  62. package/dist/LinearPairedArcDisplay/components/ReactComponent.d.ts +0 -6
  63. package/dist/LinearPairedArcDisplay/components/ReactComponent.js +0 -13
  64. package/dist/LinearPairedArcDisplay/components/util.d.ts +0 -17
  65. package/dist/LinearPairedArcDisplay/components/util.js +0 -66
  66. package/dist/LinearPairedArcDisplay/configSchema.d.ts +0 -35
  67. package/dist/LinearPairedArcDisplay/configSchema.js +0 -18
  68. package/dist/LinearPairedArcDisplay/fetchChains.d.ts +0 -27
  69. package/dist/LinearPairedArcDisplay/fetchChains.js +0 -21
  70. package/dist/LinearPairedArcDisplay/index.d.ts +0 -2
  71. package/dist/LinearPairedArcDisplay/index.js +0 -54
  72. package/dist/LinearPairedArcDisplay/model.d.ts +0 -129
  73. package/dist/LinearPairedArcDisplay/model.js +0 -105
  74. package/dist/LinearPairedArcDisplay/renderSvg.d.ts +0 -4
  75. package/dist/LinearPairedArcDisplay/renderSvg.js +0 -17
  76. package/dist/LinearPairedArcDisplay/util.d.ts +0 -27
  77. package/dist/LinearPairedArcDisplay/util.js +0 -119
  78. package/dist/index.d.ts +0 -6
  79. package/dist/index.js +0 -43
package/dist/index.js DELETED
@@ -1,43 +0,0 @@
1
- "use strict";
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- var __importDefault = (this && this.__importDefault) || function (mod) {
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- return (mod && mod.__esModule) ? mod : { "default": mod };
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- };
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- Object.defineProperty(exports, "__esModule", { value: true });
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- const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
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- const colors_1 = require("@jbrowse/core/ui/colors");
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- const ArcRenderer_1 = __importDefault(require("./ArcRenderer"));
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- const LinearArcDisplay_1 = __importDefault(require("./LinearArcDisplay"));
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- const LinearPairedArcDisplay_1 = __importDefault(require("./LinearPairedArcDisplay"));
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- class ArcPlugin extends Plugin_1.default {
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- constructor() {
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- super(...arguments);
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- this.name = 'ArcRenderer';
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- }
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- install(pluginManager) {
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- (0, ArcRenderer_1.default)(pluginManager);
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- (0, LinearArcDisplay_1.default)(pluginManager);
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- (0, LinearPairedArcDisplay_1.default)(pluginManager);
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- pluginManager.jexl.addFunction('logThickness', (feature, attributeName) => Math.log(feature.get(attributeName) + 1));
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- pluginManager.jexl.addFunction('defaultPairedArcColor', (_feature, alt) => {
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- if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<DEL')) {
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- return colors_1.set1[0];
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- }
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- else if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<DUP')) {
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- return colors_1.set1[1];
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- }
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- else if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<INV')) {
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- return colors_1.set1[2];
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- }
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- else if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<TRA')) {
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- return colors_1.set1[3];
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- }
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- else if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<CNV')) {
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- return colors_1.set1[4];
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- }
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- else {
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- return colors_1.set1[6];
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- }
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- });
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- }
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- }
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- exports.default = ArcPlugin;