@jbrowse/plugin-arc 3.6.5 → 4.0.0

package/esm/LinearPairedArcDisplay/model.js

@@ -1,8 +1,8 @@
 import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
 import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes';
 import { getContainingTrack, getContainingView, getSession, isSelectionContainer, isSessionModelWithWidgets, } from '@jbrowse/core/util';
+import { types } from '@jbrowse/mobx-state-tree';
 import { FeatureDensityMixin, TrackHeightMixin, } from '@jbrowse/plugin-linear-genome-view';
-import { types } from 'mobx-state-tree';
 export function stateModelFactory(configSchema) {
     return types
         .compose('LinearPairedArcDisplay', BaseDisplay, TrackHeightMixin(), FeatureDensityMixin(), types.model({
@@ -18,8 +18,7 @@ export function stateModelFactory(configSchema) {
     }))
         .views(self => ({
         get displayModeSetting() {
-            var _a;
-            return (_a = self.displayMode) !== null && _a !== void 0 ? _a : getConf(self, ['renderer', 'displayMode']);
+            return self.displayMode ?? getConf(self, ['renderer', 'displayMode']);
         },
     }))
         .actions(self => ({
@@ -52,7 +51,7 @@ export function stateModelFactory(configSchema) {
             ;
             (async () => {
                 try {
-                    const { doAfterAttach } = await import('./afterAttach');
+                    const { doAfterAttach } = await import("./afterAttach.js");
                     doAfterAttach(self);
                 }
                 catch (e) {
@@ -62,7 +61,7 @@ export function stateModelFactory(configSchema) {
             })();
         },
         async renderSvg(opts) {
-            const { renderArcSvg } = await import('./renderSvg');
+            const { renderArcSvg } = await import("./renderSvg.js");
             return renderArcSvg(self, opts);
         },
     }));

package/esm/LinearPairedArcDisplay/renderSvg.d.ts

@@ -1,4 +1,4 @@
-import type { LinearArcDisplayModel } from './model';
+import type { LinearArcDisplayModel } from './model.ts';
 export declare function renderArcSvg(model: LinearArcDisplayModel, _opts: {
     rasterizeLayers?: boolean;
 }): Promise<import("react/jsx-runtime").JSX.Element>;

package/esm/LinearPairedArcDisplay/renderSvg.js

@@ -1,6 +1,6 @@
 import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
 import { getContainingView, when } from '@jbrowse/core/util';
-import Arcs from './components/Arcs';
+import Arcs from "./components/Arcs.js";
 export async function renderArcSvg(model, _opts) {
     await when(() => !model.loading);
     const view = getContainingView(model);

package/esm/LinearPairedArcDisplay/util.d.ts

@@ -1,7 +1,7 @@
 import type { BaseFeatureDataAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
 import type { AugmentedRegion, Feature } from '@jbrowse/core/util';
+import type { IAnyStateTreeNode } from '@jbrowse/mobx-state-tree';
 import type { IAutorunOptions } from 'mobx';
-import type { IAnyStateTreeNode } from 'mobx-state-tree';
 export declare function getTag(feature: Feature, tag: string): any;
 export declare function getTagAlt(feature: Feature, tag: string, alt: string): any;
 export declare const orientationTypes: {

package/esm/LinearPairedArcDisplay/util.js

@@ -1,13 +1,12 @@
+import { addDisposer, isAlive } from '@jbrowse/mobx-state-tree';
 import { autorun } from 'mobx';
-import { addDisposer, isAlive } from 'mobx-state-tree';
 import { firstValueFrom } from 'rxjs';
 import { toArray } from 'rxjs/operators';
 export function getTag(feature, tag) {
     return feature.get('tags')[tag];
 }
 export function getTagAlt(feature, tag, alt) {
-    var _a;
-    return (_a = getTag(feature, tag)) !== null && _a !== void 0 ? _a : getTag(feature, alt);
+    return getTag(feature, tag) ?? getTag(feature, alt);
 }
 export const orientationTypes = {
     fr: {
@@ -67,7 +66,6 @@ export function getColorWGBS(strand, base) {
     return '#888';
 }
 export async function fetchSequence(region, adapter) {
-    var _a;
     const { start, end, originalRefName, refName } = region;
     const feats = await firstValueFrom(adapter
         .getFeatures({
@@ -77,7 +75,7 @@ export async function fetchSequence(region, adapter) {
         start: Math.max(0, start - 1),
     })
         .pipe(toArray()));
-    return (_a = feats[0]) === null || _a === void 0 ? void 0 : _a.get('seq');
+    return feats[0]?.get('seq');
 }
 export function shouldFetchReferenceSequence(type) {
     return type === 'methylation';

package/esm/index.js

@@ -1,32 +1,29 @@
 import Plugin from '@jbrowse/core/Plugin';
 import { set1 } from '@jbrowse/core/ui/colors';
-import ArcRendererF from './ArcRenderer';
-import LinearArcDisplayF from './LinearArcDisplay';
-import LinearPairedArcDisplayF from './LinearPairedArcDisplay';
+import ArcRendererF from "./ArcRenderer/index.js";
+import LinearArcDisplayF from "./LinearArcDisplay/index.js";
+import LinearPairedArcDisplayF from "./LinearPairedArcDisplay/index.js";
 export default class ArcPlugin extends Plugin {
-    constructor() {
-        super(...arguments);
-        this.name = 'ArcRenderer';
-    }
+    name = 'ArcRenderer';
     install(pluginManager) {
         ArcRendererF(pluginManager);
         LinearArcDisplayF(pluginManager);
         LinearPairedArcDisplayF(pluginManager);
         pluginManager.jexl.addFunction('logThickness', (feature, attributeName) => Math.log(feature.get(attributeName) + 1));
         pluginManager.jexl.addFunction('defaultPairedArcColor', (_feature, alt) => {
-            if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<DEL')) {
+            if (alt?.startsWith('<DEL')) {
                 return set1[0];
             }
-            else if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<DUP')) {
+            else if (alt?.startsWith('<DUP')) {
                 return set1[1];
             }
-            else if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<INV')) {
+            else if (alt?.startsWith('<INV')) {
                 return set1[2];
             }
-            else if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<TRA')) {
+            else if (alt?.startsWith('<TRA')) {
                 return set1[3];
             }
-            else if (alt === null || alt === void 0 ? void 0 : alt.startsWith('<CNV')) {
+            else if (alt?.startsWith('<CNV')) {
                 return set1[4];
             }
             else {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-arc",
-  "version": "3.6.5",
+  "version": "4.0.0",
   "description": "JBrowse 2 arc adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -15,45 +15,41 @@
     "directory": "plugins/arc"
   },
   "author": "JBrowse Team",
-  "distMain": "dist/index.js",
-  "srcMain": "src/index.ts",
-  "main": "dist/index.js",
+  "main": "esm/index.js",
   "files": [
-    "dist",
     "esm"
   ],
-  "scripts": {
-    "build": "npm-run-all build:*",
-    "test": "cd ../..; jest --passWithNoTests plugins/arc",
-    "prepublishOnly": "yarn test",
-    "prepack": "yarn build && yarn useDist",
-    "postpack": "yarn useSrc",
-    "useDist": "node ../../scripts/useDist.js",
-    "useSrc": "node ../../scripts/useSrc.js",
-    "prebuild": "npm run clean",
-    "build:esm": "tsc --build tsconfig.build.esm.json",
-    "build:commonjs": "tsc --build tsconfig.build.commonjs.json",
-    "clean": "rimraf dist esm *.tsbuildinfo"
-  },
   "dependencies": {
-    "@jbrowse/core": "^3.6.5",
-    "@jbrowse/plugin-linear-genome-view": "^3.6.5",
-    "@jbrowse/plugin-wiggle": "^3.6.5",
-    "@mui/material": "^7.0.0",
-    "mobx": "^6.0.0",
-    "mobx-react": "^9.0.0",
-    "mobx-state-tree": "^5.0.0",
-    "rxjs": "^7.0.0"
+    "@gmod/vcf": "^6.1.0",
+    "@jbrowse/mobx-state-tree": "^5.5.0",
+    "@mui/icons-material": "^7.3.6",
+    "@mui/material": "^7.3.6",
+    "mobx": "^6.15.0",
+    "mobx-react": "^9.2.1",
+    "rxjs": "^7.8.2",
+    "@jbrowse/plugin-linear-genome-view": "^4.0.0",
+    "@jbrowse/core": "^4.0.0"
   },
   "peerDependencies": {
     "react": ">=18.0.0",
     "react-dom": ">=18.0.0"
   },
-  "distModule": "esm/index.js",
-  "srcModule": "src/index.ts",
-  "module": "esm/index.js",
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "354d0a87b757b4d84f824b47507662f6f3a1693f"
-}
+  "sideEffects": false,
+  "scripts": {
+    "build": "pnpm run /^build:/",
+    "test": "cd ../..; jest --passWithNoTests plugins/arc",
+    "prebuild": "pnpm clean",
+    "build:esm": "tsc -p tsconfig.build.esm.json",
+    "clean": "rimraf esm *.tsbuildinfo"
+  },
+  "types": "esm/index.d.ts",
+  "exports": {
+    ".": {
+      "types": "./esm/index.d.ts",
+      "import": "./esm/index.js"
+    }
+  }
+}

package/dist/ArcRenderer/ArcRenderer.d.ts

@@ -1,3 +0,0 @@
-import FeatureRendererType from '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType';
-export default class ArcRenderer extends FeatureRendererType {
-}

package/dist/ArcRenderer/ArcRenderer.js

@@ -1,9 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const FeatureRendererType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType"));
-class ArcRenderer extends FeatureRendererType_1.default {
-}
-exports.default = ArcRenderer;

package/dist/ArcRenderer/ArcRendering.d.ts

@@ -1,15 +0,0 @@
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { Feature, Region } from '@jbrowse/core/util';
-declare const ArcRendering: ({ features, config, regions, bpPerPx, height, exportSVG, displayModel, onFeatureClick, }: {
-    features: Map<string, Feature>;
-    config: AnyConfigurationModel;
-    regions: Region[];
-    bpPerPx: number;
-    height: number;
-    displayModel?: {
-        selectedFeatureId: string;
-    };
-    onFeatureClick: (event: React.MouseEvent, featureId: string) => void;
-    exportSVG: boolean;
-}) => import("react/jsx-runtime").JSX.Element;
-export default ArcRendering;

package/dist/ArcRenderer/ArcRendering.js

@@ -1,120 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const mobx_react_1 = require("mobx-react");
-const ArcTooltip = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../ArcTooltip'))));
-function Arc({ selectedFeatureId, region, bpPerPx, config, height: displayHeight, feature, onFeatureClick, }) {
-    const [isMouseOvered, setIsMouseOvered] = (0, react_1.useState)(false);
-    const [left, right] = (0, util_1.bpSpanPx)(feature.get('start'), feature.get('end'), region, bpPerPx);
-    const featureId = feature.id();
-    const selected = selectedFeatureId && String(selectedFeatureId) === String(feature.id());
-    const stroke = selected ? 'red' : (0, configuration_1.readConfObject)(config, 'color', { feature });
-    const textStroke = selected ? 'red' : 'black';
-    const label = (0, configuration_1.readConfObject)(config, 'label', { feature });
-    const caption = (0, configuration_1.readConfObject)(config, 'caption', { feature });
-    const strokeWidth = (0, configuration_1.readConfObject)(config, 'thickness', { feature }) || 2;
-    const height = Math.min((0, configuration_1.readConfObject)(config, 'height', { feature }) || 100, displayHeight);
-    const ref = (0, react_1.useRef)(null);
-    const t = 0.5;
-    const t1 = 1 - t;
-    const textYCoord = 3 * (t1 * t1) * (t * height) + 3 * t1 * (t * t) * height;
-    return ((0, jsx_runtime_1.jsxs)("g", { children: [(0, jsx_runtime_1.jsx)("path", { ref: ref, ...(0, util_1.getStrokeProps)(stroke), d: `M ${left} 0 C ${left} ${height}, ${right} ${height}, ${right} 0`, strokeWidth: strokeWidth, fill: "transparent", onClick: e => {
-                    onFeatureClick(e, featureId);
-                }, onMouseOver: () => {
-                    setIsMouseOvered(true);
-                }, onMouseLeave: () => {
-                    setIsMouseOvered(false);
-                }, pointerEvents: "stroke" }), isMouseOvered ? ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(ArcTooltip, { contents: caption }) })) : null, (0, jsx_runtime_1.jsx)("text", { x: left + (right - left) / 2, y: textYCoord + 3, stroke: "white", strokeWidth: "0.6em", children: label }), (0, jsx_runtime_1.jsx)("text", { x: left + (right - left) / 2, y: textYCoord + 3, stroke: textStroke, children: label })] }));
-}
-function polarToCartesian(centerX, centerY, radius, angleInDegrees) {
-    const angleInRadians = ((angleInDegrees - 90) * Math.PI) / 180;
-    return {
-        x: centerX + radius * Math.cos(angleInRadians),
-        y: centerY + radius * Math.sin(angleInRadians),
-    };
-}
-function describeArc(x, y, radius, startAngle, endAngle) {
-    const start = polarToCartesian(x, y, radius, endAngle);
-    const end = polarToCartesian(x, y, radius, startAngle);
-    const largeArcFlag = endAngle - startAngle <= 180 ? '0' : '1';
-    return [
-        'M',
-        start.x,
-        start.y,
-        'A',
-        radius,
-        radius,
-        0,
-        largeArcFlag,
-        0,
-        end.x,
-        end.y,
-    ].join(' ');
-}
-function SemiCircles({ selectedFeatureId, region, bpPerPx, config, onFeatureClick, feature, }) {
-    const [isMouseOvered, setIsMouseOvered] = (0, react_1.useState)(false);
-    const [left, right] = (0, util_1.bpSpanPx)(feature.get('start'), feature.get('end'), region, bpPerPx);
-    const featureId = feature.id();
-    const selected = selectedFeatureId && String(selectedFeatureId) === String(feature.id());
-    const stroke = selected ? 'red' : (0, configuration_1.readConfObject)(config, 'color', { feature });
-    const textStroke = selected ? 'red' : 'black';
-    const label = (0, configuration_1.readConfObject)(config, 'label', { feature });
-    const caption = (0, configuration_1.readConfObject)(config, 'caption', { feature });
-    const strokeWidth = (0, configuration_1.readConfObject)(config, 'thickness', { feature }) || 2;
-    const ref = (0, react_1.useRef)(null);
-    const textYCoord = (right - left) / 2;
-    return ((0, jsx_runtime_1.jsxs)("g", { children: [(0, jsx_runtime_1.jsx)("path", { d: describeArc(left + (right - left) / 2, 0, (right - left) / 2, 90, 270), ...(0, util_1.getStrokeProps)(stroke), strokeWidth: strokeWidth, fill: "transparent", onClick: e => {
-                    onFeatureClick(e, featureId);
-                }, onMouseOver: () => {
-                    setIsMouseOvered(true);
-                }, onMouseLeave: () => {
-                    setIsMouseOvered(false);
-                }, ref: ref, pointerEvents: "stroke" }), isMouseOvered ? (0, jsx_runtime_1.jsx)(ArcTooltip, { contents: caption }) : null, (0, jsx_runtime_1.jsx)("text", { x: left + (right - left) / 2, y: textYCoord + 3, stroke: "white", strokeWidth: "0.6em", children: label }), (0, jsx_runtime_1.jsx)("text", { x: left + (right - left) / 2, y: textYCoord + 3, stroke: textStroke, children: label })] }));
-}
-const ArcRendering = (0, mobx_react_1.observer)(function ({ features, config, regions, bpPerPx, height, exportSVG, displayModel, onFeatureClick, }) {
-    const region = regions[0];
-    const width = (region.end - region.start) / bpPerPx;
-    const semicircles = (0, configuration_1.readConfObject)(config, 'displayMode') === 'semicircles';
-    const { selectedFeatureId } = displayModel || {};
-    return ((0, jsx_runtime_1.jsx)(Wrapper, { exportSVG: exportSVG, width: width, height: height, children: [...features.values()].map(f => semicircles ? ((0, jsx_runtime_1.jsx)(SemiCircles, { config: config, region: region, bpPerPx: bpPerPx, selectedFeatureId: selectedFeatureId, onFeatureClick: onFeatureClick, feature: f }, f.id())) : ((0, jsx_runtime_1.jsx)(Arc, { height: height, config: config, region: region, bpPerPx: bpPerPx, selectedFeatureId: selectedFeatureId, onFeatureClick: onFeatureClick, feature: f }, f.id()))) }));
-});
-function Wrapper({ exportSVG, width, height, children, }) {
-    return exportSVG ? (children) : ((0, jsx_runtime_1.jsx)("svg", { width: width, height: height, children: children }));
-}
-exports.default = ArcRendering;

package/dist/ArcRenderer/configSchema.d.ts

@@ -1,39 +0,0 @@
-declare const ArcRenderer: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    color: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    thickness: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    label: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    height: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    caption: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    displayMode: {
-        type: string;
-        defaultValue: string;
-        model: import("mobx-state-tree").ISimpleType<string>;
-        description: string;
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default ArcRenderer;

package/dist/ArcRenderer/configSchema.js

@@ -1,44 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const mobx_state_tree_1 = require("mobx-state-tree");
-function x() { }
-const ArcRenderer = (0, configuration_1.ConfigurationSchema)('ArcRenderer', {
-    color: {
-        type: 'color',
-        description: 'the color of the arcs',
-        defaultValue: 'darkblue',
-        contextVariable: ['feature'],
-    },
-    thickness: {
-        type: 'number',
-        description: 'the thickness of the arcs',
-        defaultValue: `jexl:logThickness(feature,'score')`,
-        contextVariable: ['feature'],
-    },
-    label: {
-        type: 'string',
-        description: 'the label to appear at the apex of the arcs',
-        defaultValue: `jexl:get(feature,'score')`,
-        contextVariable: ['feature'],
-    },
-    height: {
-        type: 'number',
-        description: 'the height of the arcs',
-        defaultValue: `jexl:log10(get(feature,'end')-get(feature,'start'))*50`,
-        contextVariable: ['feature'],
-    },
-    caption: {
-        type: 'string',
-        description: 'the caption to appear when hovering over any point on the arcs',
-        defaultValue: `jexl:get(feature,'name')`,
-        contextVariable: ['feature'],
-    },
-    displayMode: {
-        type: 'enum',
-        defaultValue: 'arcs',
-        model: mobx_state_tree_1.types.enumeration('DisplayMode', ['arcs', 'semicircles']),
-        description: 'render semi-circles instead of arcs',
-    },
-}, { explicitlyTyped: true });
-exports.default = ArcRenderer;

package/dist/ArcRenderer/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function ArcRendererF(pluginManager: PluginManager): void;

package/dist/ArcRenderer/index.js

@@ -1,17 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = ArcRendererF;
-const ArcRenderer_1 = __importDefault(require("./ArcRenderer"));
-const ArcRendering_1 = __importDefault(require("./ArcRendering"));
-const configSchema_1 = __importDefault(require("./configSchema"));
-function ArcRendererF(pluginManager) {
-    pluginManager.addRendererType(() => new ArcRenderer_1.default({
-        name: 'ArcRenderer',
-        ReactComponent: ArcRendering_1.default,
-        configSchema: configSchema_1.default,
-        pluginManager,
-    }));
-}

package/dist/ArcTooltip.d.ts

@@ -1,4 +0,0 @@
-declare const ArcTooltip: ({ contents }: {
-    contents?: string;
-}) => import("react/jsx-runtime").JSX.Element | null;
-export default ArcTooltip;

package/dist/ArcTooltip.js

@@ -1,17 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const BaseTooltip_1 = __importDefault(require("@jbrowse/core/ui/BaseTooltip"));
-const mobx_react_1 = require("mobx-react");
-const TooltipContents = (0, react_1.forwardRef)(function TooltipContents2({ message }, ref) {
-    return ((0, jsx_runtime_1.jsx)("div", { ref: ref, children: (0, react_1.isValidElement)(message) ? (message) : message ? ((0, jsx_runtime_1.jsx)(ui_1.SanitizedHTML, { html: String(message) })) : null }));
-});
-const ArcTooltip = (0, mobx_react_1.observer)(function ({ contents }) {
-    return contents ? ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(BaseTooltip_1.default, { children: (0, jsx_runtime_1.jsx)(TooltipContents, { message: contents }) }) })) : null;
-});
-exports.default = ArcTooltip;

package/dist/LinearArcDisplay/configSchema.d.ts

@@ -1,31 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export declare function configSchemaFactory(pluginManager: PluginManager): import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    renderer: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IAnyModelType, [undefined]>;
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-    maxFeatureScreenDensity: {
-        type: string;
-        description: string;
-        defaultValue: number;
-    };
-    fetchSizeLimit: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-    height: {
-        type: string;
-        defaultValue: number;
-        description: string;
-    };
-    mouseover: {
-        type: string;
-        description: string;
-        defaultValue: string;
-        contextVariable: string[];
-    };
-    jexlFilters: {
-        type: string;
-        description: string;
-        defaultValue: never[];
-    };
-}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>, undefined>>;

package/dist/LinearArcDisplay/configSchema.js

@@ -1,14 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.configSchemaFactory = configSchemaFactory;
-const configuration_1 = require("@jbrowse/core/configuration");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const mobx_state_tree_1 = require("mobx-state-tree");
-function configSchemaFactory(pluginManager) {
-    return (0, configuration_1.ConfigurationSchema)('LinearArcDisplay', {
-        renderer: mobx_state_tree_1.types.optional(pluginManager.pluggableConfigSchemaType('renderer'), { type: 'ArcRenderer' }),
-    }, {
-        baseConfiguration: plugin_linear_genome_view_1.baseLinearDisplayConfigSchema,
-        explicitlyTyped: true,
-    });
-}

package/dist/LinearArcDisplay/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function LinearArcDisplayF(pluginManager: PluginManager): void;

package/dist/LinearArcDisplay/index.js

@@ -1,21 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = LinearArcDisplayF;
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const configSchema_1 = require("./configSchema");
-const model_1 = require("./model");
-function LinearArcDisplayF(pluginManager) {
-    pluginManager.addDisplayType(() => {
-        const configSchema = (0, configSchema_1.configSchemaFactory)(pluginManager);
-        return new pluggableElementTypes_1.DisplayType({
-            name: 'LinearArcDisplay',
-            displayName: 'Arc display',
-            configSchema,
-            stateModel: (0, model_1.stateModelFactory)(configSchema),
-            trackType: 'FeatureTrack',
-            viewType: 'LinearGenomeView',
-            ReactComponent: plugin_linear_genome_view_1.BaseLinearDisplayComponent,
-        });
-    });
-}