@jbrowse/plugin-arc 3.6.5 → 4.0.0

package/dist/LinearArcDisplay/model.d.ts

@@ -1,327 +0,0 @@
-import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-export declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<string>;
-    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-} & {
-    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-        key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
-        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        stopToken: string | undefined;
-        filled: boolean;
-        reactElement: React.ReactElement | undefined;
-        features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-        layout: any;
-        status: string;
-        error: unknown;
-        message: string | undefined;
-        maxHeightReached: boolean;
-        ReactComponent: ({ model, }: {
-            model: {
-                error?: unknown;
-                reload: () => void;
-                message: React.ReactNode;
-                filled?: boolean;
-                status?: string;
-                reactElement?: React.ReactElement;
-            };
-        }) => import("react/jsx-runtime").JSX.Element | undefined;
-        renderProps: any;
-    } & {
-        doReload(): void;
-        afterAttach(): void;
-        setStatus(message: string): void;
-        setLoading(newStopToken: string): void;
-        setMessage(messageText: string): void;
-        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
-        setError(error: unknown): void;
-        reload(): void;
-        beforeDestroy(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        maxFeatureScreenDensity: {
-            type: string;
-            description: string;
-            defaultValue: number;
-        };
-        fetchSizeLimit: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        height: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        mouseover: {
-            type: string;
-            description: string;
-            defaultValue: string;
-            contextVariable: string[];
-        };
-        jexlFilters: {
-            type: string;
-            description: string;
-            defaultValue: never[];
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-} & {
-    type: import("mobx-state-tree").ISimpleType<"LinearArcDisplay">;
-    configuration: AnyConfigurationSchemaType;
-    displayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-}, {
-    rendererTypeName: string;
-    error: unknown;
-    message: string | undefined;
-} & {
-    readonly RenderingComponent: React.FC<{
-        model: {
-            id: string;
-            type: string;
-            rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: () => void;
-        blockState?: Record<string, any>;
-    }>;
-    readonly DisplayBlurb: React.FC<{
-        model: {
-            id: string;
-            type: string;
-            rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    }> | null;
-    readonly adapterConfig: any;
-    readonly parentTrack: any;
-    renderProps(): any;
-    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-    readonly DisplayMessageComponent: undefined | React.FC<any>;
-    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): null;
-} & {
-    setMessage(arg?: string): void;
-    setError(error?: unknown): void;
-    setRpcDriverName(rpcDriverName: string): void;
-    reload(): void;
-} & {
-    scrollTop: number;
-} & {
-    readonly height: number;
-} & {
-    setScrollTop(scrollTop: number): void;
-    setHeight(displayHeight: number): number;
-    resizeHeight(distance: number): number;
-} & {
-    featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
-    currStatsBpPerPx: number;
-} & {
-    readonly currentBytesRequested: number;
-    readonly currentFeatureScreenDensity: number;
-    readonly maxFeatureScreenDensity: any;
-    readonly featureDensityStatsReady: boolean;
-    readonly maxAllowableBytes: number;
-} & {
-    afterAttach(): void;
-} & {
-    setCurrStatsBpPerPx(n: number): void;
-    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
-    getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    setFeatureDensityStatsP(arg: any): void;
-    setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
-    clearFeatureDensityStats(): void;
-} & {
-    readonly regionTooLarge: boolean;
-    readonly regionTooLargeReason: string;
-} & {
-    readonly statsReadyAndRegionNotTooLarge: boolean;
-    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
-} & {
-    featureIdUnderMouse: undefined | string;
-    contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
-} & {
-    readonly DisplayMessageComponent: undefined | React.FC<any>;
-    readonly blockType: "staticBlocks" | "dynamicBlocks";
-    readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
-} & {
-    readonly renderDelay: number;
-    readonly TooltipComponent: import("@jbrowse/core/util").AnyReactComponentType;
-    readonly selectedFeatureId: string | undefined;
-    copyInfoToClipboard(feature: import("@jbrowse/core/util").Feature): void;
-} & {
-    readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
-    readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
-    getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
-    searchFeatureByID(id: string): [number, number, number, number] | undefined;
-} & {
-    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-    deleteBlock(key: string): void;
-    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-    navToFeature(feature: import("@jbrowse/core/util").Feature): void;
-    clearFeatureSelection(): void;
-    setFeatureIdUnderMouse(feature?: string): void;
-    setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
-} & {
-    reload(): Promise<void>;
-} & {
-    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    renderProps(): any;
-} & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
-    afterAttach(): void;
-} & {
-    readonly blockType: string;
-    readonly renderDelay: number;
-    readonly rendererTypeName: any;
-} & {
-    readonly displayModeSetting: any;
-} & {
-    readonly rendererConfig: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
-    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
-} & {
-    renderProps(): any;
-} & {
-    setDisplayMode(flag: string): void;
-} & {
-    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
-        label: string;
-        subMenu: {
-            type: string;
-            label: string;
-            onClick: () => void;
-            checked: boolean;
-        }[];
-    })[];
-}, {
-    type: string;
-} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<string>;
-    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-} & {
-    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-        key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>;
-        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        stopToken: string | undefined;
-        filled: boolean;
-        reactElement: React.ReactElement | undefined;
-        features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-        layout: any;
-        status: string;
-        error: unknown;
-        message: string | undefined;
-        maxHeightReached: boolean;
-        ReactComponent: ({ model, }: {
-            model: {
-                error?: unknown;
-                reload: () => void;
-                message: React.ReactNode;
-                filled?: boolean;
-                status?: string;
-                reactElement?: React.ReactElement;
-            };
-        }) => import("react/jsx-runtime").JSX.Element | undefined;
-        renderProps: any;
-    } & {
-        doReload(): void;
-        afterAttach(): void;
-        setStatus(message: string): void;
-        setLoading(newStopToken: string): void;
-        setMessage(messageText: string): void;
-        setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void;
-        setError(error: unknown): void;
-        reload(): void;
-        beforeDestroy(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        maxFeatureScreenDensity: {
-            type: string;
-            description: string;
-            defaultValue: number;
-        };
-        fetchSizeLimit: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        height: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        mouseover: {
-            type: string;
-            description: string;
-            defaultValue: string;
-            contextVariable: string[];
-        };
-        jexlFilters: {
-            type: string;
-            description: string;
-            defaultValue: never[];
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
-    type: string;
-    id: string;
-    configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-    rpcDriverName: string | undefined;
-    heightPreConfig: number | undefined;
-    userBpPerPxLimit: number | undefined;
-    userByteSizeLimit: number | undefined;
-} & import("mobx-state-tree")._NotCustomized>;

package/dist/LinearArcDisplay/model.js

@@ -1,91 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.stateModelFactory = stateModelFactory;
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const mobx_state_tree_1 = require("mobx-state-tree");
-function stateModelFactory(configSchema) {
-    return mobx_state_tree_1.types
-        .compose('LinearArcDisplay', plugin_linear_genome_view_1.BaseLinearDisplay, mobx_state_tree_1.types.model({
-        type: mobx_state_tree_1.types.literal('LinearArcDisplay'),
-        configuration: (0, configuration_1.ConfigurationReference)(configSchema),
-        displayMode: mobx_state_tree_1.types.maybe(mobx_state_tree_1.types.string),
-    }))
-        .views(self => ({
-        get blockType() {
-            return 'staticBlocks';
-        },
-        get renderDelay() {
-            return 500;
-        },
-        get rendererTypeName() {
-            return self.configuration.renderer.type;
-        },
-    }))
-        .views(self => ({
-        get displayModeSetting() {
-            var _a;
-            return (_a = self.displayMode) !== null && _a !== void 0 ? _a : (0, configuration_1.getConf)(self, ['renderer', 'displayMode']);
-        },
-    }))
-        .views(self => ({
-        get rendererConfig() {
-            const configBlob = (0, configuration_1.getConf)(self, ['renderer']) || {};
-            const config = configBlob;
-            return self.rendererType.configSchema.create({
-                ...config,
-                displayMode: self.displayModeSetting,
-            }, (0, util_1.getEnv)(self));
-        },
-    }))
-        .views(self => {
-        const { renderProps: superRenderProps } = self;
-        return {
-            renderProps() {
-                return {
-                    ...superRenderProps(),
-                    rpcDriverName: self.rpcDriverName,
-                    config: self.rendererConfig,
-                    height: self.height,
-                };
-            },
-        };
-    })
-        .actions(self => ({
-        setDisplayMode(flag) {
-            self.displayMode = flag;
-        },
-    }))
-        .views(self => {
-        const superMenuItems = self.trackMenuItems;
-        return {
-            trackMenuItems() {
-                return [
-                    ...superMenuItems(),
-                    {
-                        label: 'Display mode',
-                        subMenu: [
-                            {
-                                type: 'radio',
-                                label: 'Arcs',
-                                onClick: () => {
-                                    self.setDisplayMode('arcs');
-                                },
-                                checked: self.displayMode === 'arcs',
-                            },
-                            {
-                                type: 'radio',
-                                label: 'Semi-circles',
-                                onClick: () => {
-                                    self.setDisplayMode('semicircles');
-                                },
-                                checked: self.displayMode === 'semicircles',
-                            },
-                        ],
-                    },
-                ];
-            },
-        };
-    });
-}

package/dist/LinearPairedArcDisplay/afterAttach.d.ts

@@ -1,2 +0,0 @@
-import type { IAnyStateTreeNode } from 'mobx-state-tree';
-export declare function doAfterAttach<T extends IAnyStateTreeNode>(self: T): void;

package/dist/LinearPairedArcDisplay/afterAttach.js

@@ -1,10 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.doAfterAttach = doAfterAttach;
-const fetchChains_1 = require("./fetchChains");
-const util_1 = require("./util");
-function doAfterAttach(self) {
-    (0, util_1.createAutorun)(self, async () => {
-        await (0, fetchChains_1.fetchChains)(self);
-    }, { delay: 1000 });
-}

package/dist/LinearPairedArcDisplay/components/Arcs.d.ts

@@ -1,6 +0,0 @@
-import type { LinearArcDisplayModel } from '../model';
-declare const Arcs: ({ model, exportSVG, }: {
-    model: LinearArcDisplayModel;
-    exportSVG?: boolean;
-}) => import("react/jsx-runtime").JSX.Element | null;
-export default Arcs;

package/dist/LinearPairedArcDisplay/components/Arcs.js

@@ -1,106 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const mobx_react_1 = require("mobx-react");
-const util_2 = require("./util");
-const ArcTooltip = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('../../ArcTooltip'))));
-const Arc = (0, mobx_react_1.observer)(function ({ model, feature, alt, assembly, view, }) {
-    var _a, _b;
-    const [mouseOvered, setMouseOvered] = (0, react_1.useState)(false);
-    const { height } = model;
-    const { k1, k2 } = (0, util_2.makeFeaturePair)(feature, alt);
-    const ref = (0, react_1.useRef)(null);
-    const c = (0, configuration_1.getConf)(model, 'color', { feature, alt });
-    const ra1 = assembly.getCanonicalRefName(k1.refName) || k1.refName;
-    const ra2 = assembly.getCanonicalRefName(k2.refName) || k2.refName;
-    const p1 = k1.start;
-    const p2 = k2.start;
-    const r1 = (_a = view.bpToPx({ refName: ra1, coord: p1 })) === null || _a === void 0 ? void 0 : _a.offsetPx;
-    const r2 = (_b = view.bpToPx({ refName: ra2, coord: p2 })) === null || _b === void 0 ? void 0 : _b.offsetPx;
-    if (r1 !== undefined && r2 !== undefined) {
-        const radius = (r2 - r1) / 2;
-        const absrad = Math.abs(radius);
-        const destY = Math.min(height, absrad);
-        const p1 = r1 - view.offsetPx;
-        const p2 = r2 - view.offsetPx;
-        const left = p1;
-        const right = p2;
-        const col = mouseOvered ? 'black' : c;
-        const sw = 3;
-        return absrad > 1 ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("path", { d: `M ${left} 0 C ${left} ${destY}, ${right} ${destY}, ${right} 0`, ref: ref, ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
-                        setMouseOvered(false);
-                    }, onMouseOver: () => {
-                        setMouseOvered(true);
-                    }, onClick: () => {
-                        model.selectFeature(feature);
-                    }, fill: "none", pointerEvents: "stroke" }), k1.mateDirection ? ((0, jsx_runtime_1.jsx)("line", { ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
-                        setMouseOvered(false);
-                    }, onMouseOver: () => {
-                        setMouseOvered(true);
-                    }, onClick: () => {
-                        model.selectFeature(feature);
-                    }, x1: left, x2: left + k1.mateDirection * 20, y1: 1.5, y2: 1.5 })) : null, k2.mateDirection ? ((0, jsx_runtime_1.jsx)("line", { ...(0, util_1.getStrokeProps)(col), strokeWidth: sw, onMouseOut: () => {
-                        setMouseOvered(false);
-                    }, onMouseOver: () => {
-                        setMouseOvered(true);
-                    }, onClick: () => {
-                        model.selectFeature(feature);
-                    }, x1: right, x2: right + k2.mateDirection * 20, y1: 1.5, y2: 1.5 })) : null, mouseOvered ? ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(ArcTooltip, { contents: (0, util_2.makeSummary)(feature, alt) }) })) : null] })) : null;
-    }
-    return null;
-});
-const Wrapper = (0, mobx_react_1.observer)(function ({ model, exportSVG, children, }) {
-    const { height } = model;
-    const view = (0, util_1.getContainingView)(model);
-    const width = Math.round(view.dynamicBlocks.totalWidthPx);
-    return exportSVG ? (children) : ((0, jsx_runtime_1.jsx)("svg", { width: width, height: height, children: children }));
-});
-const Arcs = (0, mobx_react_1.observer)(function ({ model, exportSVG, }) {
-    const view = (0, util_1.getContainingView)(model);
-    const session = (0, util_1.getSession)(model);
-    const { assemblyManager } = session;
-    const { features } = model;
-    const assembly = assemblyManager.get(view.assemblyNames[0]);
-    return assembly ? ((0, jsx_runtime_1.jsx)(Wrapper, { model: model, exportSVG: exportSVG, children: features === null || features === void 0 ? void 0 : features.map(f => {
-            var _a;
-            const alts = f.get('ALT');
-            return ((_a = alts === null || alts === void 0 ? void 0 : alts.map(a => ((0, jsx_runtime_1.jsx)(Arc, { session: session, feature: f, alt: a, view: view, model: model, assembly: assembly }, `${f.id()}-${a}`)))) !== null && _a !== void 0 ? _a : ((0, jsx_runtime_1.jsx)(Arc, { session: session, feature: f, view: view, model: model, assembly: assembly }, f.id())));
-        }) })) : null;
-});
-exports.default = Arcs;

package/dist/LinearPairedArcDisplay/components/BaseDisplayComponent.d.ts

@@ -1,6 +0,0 @@
-import type { LinearArcDisplayModel } from '../model';
-declare const BaseDisplayComponent: ({ model, children, }: {
-    model: LinearArcDisplayModel;
-    children?: React.ReactNode;
-}) => import("react/jsx-runtime").JSX.Element | null;
-export default BaseDisplayComponent;

package/dist/LinearPairedArcDisplay/components/BaseDisplayComponent.js

@@ -1,83 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const plugin_linear_genome_view_1 = require("@jbrowse/plugin-linear-genome-view");
-const Refresh_1 = __importDefault(require("@mui/icons-material/Refresh"));
-const Report_1 = __importDefault(require("@mui/icons-material/Report"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const ErrorMessageStackTraceDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('@jbrowse/core/ui/ErrorMessageStackTraceDialog'))));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    loading: {
-        backgroundColor: theme.palette.background.default,
-        backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${theme.palette.action.disabledBackground} 5px, ${theme.palette.action.disabledBackground} 10px)`,
-        position: 'absolute',
-        bottom: 0,
-        height: 50,
-        width: 300,
-        right: 0,
-        pointerEvents: 'none',
-        textAlign: 'center',
-    },
-}));
-const BaseDisplayComponent = (0, mobx_react_1.observer)(function ({ model, children, }) {
-    const { error, regionTooLarge } = model;
-    return error ? ((0, jsx_runtime_1.jsx)(plugin_linear_genome_view_1.BlockMsg, { message: `${error}`, severity: "error", action: (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Reload", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { "data-testid": "reload_button", onClick: () => {
-                            model.reload();
-                        }, children: (0, jsx_runtime_1.jsx)(Refresh_1.default, {}) }) }), (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Show stack trace", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
-                            (0, util_1.getSession)(model).queueDialog(onClose => [
-                                ErrorMessageStackTraceDialog,
-                                { onClose, error: model.error },
-                            ]);
-                        }, children: (0, jsx_runtime_1.jsx)(Report_1.default, {}) }) })] }) })) : regionTooLarge ? (model.regionCannotBeRendered()) : ((0, jsx_runtime_1.jsx)(DataDisplay, { model: model, children: children }));
-});
-const DataDisplay = (0, mobx_react_1.observer)(function ({ model, children, }) {
-    const { loading } = model;
-    return ((0, jsx_runtime_1.jsxs)("div", { children: [children, loading ? (0, jsx_runtime_1.jsx)(LoadingBar, { model: model }) : null] }));
-});
-const LoadingBar = (0, mobx_react_1.observer)(function ({ model, }) {
-    const { classes } = useStyles();
-    const { message } = model;
-    return ((0, jsx_runtime_1.jsx)("div", { className: classes.loading, children: (0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, { message: message }) }));
-});
-exports.default = BaseDisplayComponent;

package/dist/LinearPairedArcDisplay/components/ReactComponent.d.ts

@@ -1,6 +0,0 @@
-import type { LinearArcDisplayModel } from '../model';
-declare const LinearArcReactComponent: ({ model, exportSVG, }: {
-    model: LinearArcDisplayModel;
-    exportSVG?: boolean;
-}) => import("react/jsx-runtime").JSX.Element;
-export default LinearArcReactComponent;

package/dist/LinearPairedArcDisplay/components/ReactComponent.js

@@ -1,13 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const mobx_react_1 = require("mobx-react");
-const Arcs_1 = __importDefault(require("./Arcs"));
-const BaseDisplayComponent_1 = __importDefault(require("./BaseDisplayComponent"));
-const LinearArcReactComponent = (0, mobx_react_1.observer)(function ({ model, exportSVG, }) {
-    return ((0, jsx_runtime_1.jsx)(BaseDisplayComponent_1.default, { model: model, children: (0, jsx_runtime_1.jsx)(Arcs_1.default, { model: model, exportSVG: exportSVG }) }));
-});
-exports.default = LinearArcReactComponent;