@jbrowse/plugin-alignments 2.6.2 → 2.7.0

package/dist/LinearReadArcsDisplay/model.d.ts

@@ -1,16 +1,8 @@
 import React from 'react';
 import { Instance } from 'mobx-state-tree';
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import { IFilter } from '../shared';
 import { ChainData } from '../shared/fetchChains';
-interface Filter {
-    flagInclude: number;
-    flagExclude: number;
-    readName?: string;
-    tagFilter?: {
-        tag: string;
-        value: string;
-    };
-}
 /**
  * #stateModel LinearReadArcsDisplay
  * extends `BaseDisplay`, it is not a block based track, hence not
@@ -31,7 +23,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     filterBy: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
         flagInclude: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         flagExclude: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-        readName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        readName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
+         * #property
+         */
         tagFilter: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
             tag: import("mobx-state-tree").ISimpleType<string>;
             value: import("mobx-state-tree").ISimpleType<string>;
@@ -74,9 +68,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     }>;
     readonly DisplayBlurb: React.FC<{
         model: {
-            id: string; /**
-             * #property
-             */
+            id: string;
             type: string;
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -84,6 +76,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             error: unknown;
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
+            /**
+             * #action
+             */
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -189,7 +184,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     /**
      * #action
      */
-    setFilterBy(filter: Filter): void;
+    setFilterBy(filter: IFilter): void;
     /**
      * #action
      * thin, bold, extrabold, etc

package/dist/LinearReadCloudDisplay/components/ReactComponent.d.ts

@@ -1,6 +1,6 @@
 import React from 'react';
 import { LinearReadCloudDisplayModel } from '../model';
-declare const _default: ({ model, }: {
+declare const LinearReadCloudReactComponent: ({ model, }: {
     model: LinearReadCloudDisplayModel;
 }) => React.JSX.Element;
-export default _default;
+export default LinearReadCloudReactComponent;

package/dist/LinearReadCloudDisplay/components/ReactComponent.js

@@ -40,7 +40,8 @@ const Cloud = (0, mobx_react_1.observer)(function ({ model, }) {
     // note: the position absolute below avoids scrollbar from appearing on track
     return (react_1.default.createElement("canvas", { "data-testid": "cloud-canvas", ref: cb, style: { width, height, position: 'absolute' }, width: width * 2, height: height * 2 }));
 });
-exports.default = (0, mobx_react_1.observer)(function ({ model, }) {
+const LinearReadCloudReactComponent = (0, mobx_react_1.observer)(function ({ model, }) {
     return (react_1.default.createElement(BaseDisplayComponent_1.default, { model: model },
         react_1.default.createElement(Cloud, { model: model })));
 });
+exports.default = LinearReadCloudReactComponent;

package/dist/LinearReadCloudDisplay/drawPairChains.js

@@ -60,8 +60,7 @@ function drawPairChains({ ctx, self, chainData, view, asm, }) {
     const maxD = Math.log((0, util_1.max)(coords.map(c => c.distance)));
     const minD = Math.max(Math.log((0, util_1.min)(coords.map(c => c.distance))) - 1, 0);
     const scaler = (self.height - 20) / (maxD - minD);
-    for (let i = 0; i < coords.length; i++) {
-        const { r1e, r1s, r2e, r2s, distance, v0, v1 } = coords[i];
+    for (const { r1e, r1s, r2e, r2s, distance, v0, v1 } of coords) {
         const w1 = Math.max(r1e - r1s, 2);
         const w2 = Math.max(r2e - r2s, 2);
         const [fill, stroke] = getPairedColor({ type, v0, v1, stats }) || [];

package/dist/LinearReadCloudDisplay/model.d.ts

@@ -1,16 +1,8 @@
 import React from 'react';
 import { Instance } from 'mobx-state-tree';
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
+import { IFilter } from '../shared';
 import { ChainData } from '../shared/fetchChains';
-interface Filter {
-    flagInclude: number;
-    flagExclude: number;
-    readName?: string;
-    tagFilter?: {
-        tag: string;
-        value: string;
-    };
-}
 /**
  * #stateModel LinearReadCloudDisplay
  * extends `BaseDisplay`, it is not a block based track, hence not BaseLinearDisplay
@@ -61,7 +53,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
-            rendererTypeName: string;
+            rendererTypeName: string; /**
+             * #property
+             */
             error: unknown;
             message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -78,12 +72,12 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             error: unknown;
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>; /**
+            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>; /**
              * #action
              * internal, a reference to a HTMLCanvas because we use a autorun to draw
              * the canvas
              */
+            type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
@@ -111,7 +105,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
 } & {
     setScrollTop(scrollTop: number): void;
     setHeight(displayHeight: number): number;
-    resizeHeight(distance: number): number;
+    resizeHeight(distance: number): number; /**
+     * #property
+     */
 } & {
     featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
     featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
@@ -128,7 +124,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     setCurrStatsBpPerPx(n: number): void;
     setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
     getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    setFeatureDensityStatsP(arg: any): void;
+    setFeatureDensityStatsP(arg: any): void; /**
+     * #method
+     */
     setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
     clearFeatureDensityStats(): void;
 } & {
@@ -180,7 +178,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     /**
      * #action
      */
-    setFilterBy(filter: Filter): void;
+    setFilterBy(filter: IFilter): void;
 } & {
     readonly drawn: boolean;
 } & {

package/dist/LinearSNPCoverageDisplay/components/Tooltip.js

@@ -9,7 +9,7 @@ const plugin_wiggle_1 = require("@jbrowse/plugin-wiggle");
 const en = (n) => n.toLocaleString('en-US');
 const toP = (s = 0) => +(+s).toFixed(1);
 const pct = (n, total) => `${toP((n / (total || 1)) * 100)}%`;
-const TooltipContents = react_1.default.forwardRef(function ({ feature }, reactRef) {
+const TooltipContents = react_1.default.forwardRef(function TooltipContents2({ feature }, reactRef) {
     const start = feature.get('start');
     const end = feature.get('end');
     const name = feature.get('refName');

package/dist/LinearSNPCoverageDisplay/models/model.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import PluginManager from '@jbrowse/core/PluginManager';
-import { AnyConfigurationSchemaType, AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 /**
  * #stateModel LinearSNPCoverageDisplay
  * extends `LinearWiggleDisplay`
@@ -19,11 +19,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         key: import("mobx-state-tree").ISimpleType<string>;
         region: import("mobx-state-tree").IModelType<{
             refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>; /**
+            start: import("mobx-state-tree").ISimpleType<number>; /**
              * #property
              */
+            end: import("mobx-state-tree").ISimpleType<number>;
+            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
         } & {
             assemblyName: import("mobx-state-tree").ISimpleType<string>;
         }, {
@@ -37,19 +37,16 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-        layout: any;
+        layout: any; /**
+         * #property
+         */
         status: string;
         error: unknown;
         message: string | undefined;
         maxHeightReached: boolean;
         ReactComponent: ({ model, }: {
-            /**
-             * #property
-             */
             model: any;
-        }) => any; /**
-         * #property
-         */
+        }) => any;
         renderProps: any;
     } & {
         doReload(): void;
@@ -88,7 +85,9 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
             type: string;
             description: string;
             defaultValue: string;
-            contextVariable: string[];
+            contextVariable: string[]; /**
+             * #property
+             */
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
@@ -98,19 +97,11 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
     minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
-     * #property
-     */
-    summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
-     * #property
-     */
+    negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
-     * #property
-     */
-    autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
-     * #property
-     */
+    scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
         max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
@@ -155,406 +146,10 @@ declare function stateModelFactory(pluginManager: PluginManager, configSchema: A
         type: import("mobx-state-tree").ISimpleType<string>;
         tag: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-}, {
-    rendererTypeName: string;
-    error: unknown;
-    message: string | undefined;
-} & {
-    readonly RenderingComponent: import("react").FC<{
-        model: {
-            id: string;
-            type: string;
-            rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: Function | undefined;
-        blockState?: Record<string, any> | undefined;
-    }>;
-    readonly DisplayBlurb: import("react").FC<{
-        model: {
-            id: string;
-            type: string;
-            rpcDriverName: string | undefined;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        }, {
-            rendererTypeName: string;
-            error: unknown;
-            message: string | undefined;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    }> | null;
-    readonly adapterConfig: any; /**
-     * #getter
-     */
-    readonly parentTrack: any;
-    renderProps(): any;
-    readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-    regionCannotBeRendered(): null;
-} & {
-    setMessage(arg?: string | undefined): void;
-    setError(error?: unknown): void;
-    setRpcDriverName(rpcDriverName: string): void;
-    reload(): void;
-} & {
-    scrollTop: number;
-} & {
-    readonly height: number;
-} & {
-    setScrollTop(scrollTop: number): void;
-    setHeight(displayHeight: number): number;
-    resizeHeight(distance: number): number;
-} & {
-    featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
-    featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
-    currStatsBpPerPx: number;
-} & {
-    readonly currentBytesRequested: number;
-    readonly currentFeatureScreenDensity: number;
-    readonly maxFeatureScreenDensity: any;
-    readonly featureDensityStatsReady: boolean;
-    readonly maxAllowableBytes: number;
-} & {
-    afterAttach(): void;
-} & {
-    setCurrStatsBpPerPx(n: number): void;
-    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
-    getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-    setFeatureDensityStatsP(arg: any): void;
-    setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
-    clearFeatureDensityStats(): void;
-} & {
-    readonly regionTooLarge: boolean;
-    readonly regionTooLargeReason: string;
-} & {
-    regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-    regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
-} & {
-    featureIdUnderMouse: string | undefined;
-    contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-} & {
-    readonly blockType: "dynamicBlocks" | "staticBlocks";
-    readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
-} & {
-    readonly renderDelay: number;
-    readonly TooltipComponent: import("react").FC<any>;
-    readonly selectedFeatureId: string | undefined;
-    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-} & {
-    readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
-    readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
-    getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
-    searchFeatureByID(id: string): [number, number, number, number] | undefined;
-} & {
-    addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-    deleteBlock(key: string): void;
-    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-    clearFeatureSelection(): void;
-    setFeatureIdUnderMouse(feature?: string | undefined): void;
-    setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
-} & {
-    reload(): Promise<void>;
-} & {
-    trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-    renderProps(): any;
-} & {
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
-    afterAttach(): void;
-} & {
-    message: string | undefined;
-    stats: {
-        scoreMin: number;
-        scoreMax: number;
-    } | undefined;
-    statsFetchInProgress: AbortController | undefined;
-} & {
-    updateQuantitativeStats(stats: {
-        scoreMin: number;
-        scoreMax: number;
-    }): void;
-    setColor(color?: string | undefined): void;
-    setPosColor(color?: string | undefined): void;
-    setNegColor(color?: string | undefined): void;
-    setLoading(aborter: AbortController): void;
-    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-    setResolution(res: number): void;
-    setFill(fill: number): void;
-    toggleLogScale(): void;
-    setScaleType(scale?: string | undefined): void;
-    setSummaryScoreMode(val: string): void;
-    setAutoscale(val: string): void;
-    setMaxScore(val?: number | undefined): void;
-    setRendererType(val: string): void;
-    setMinScore(val?: number | undefined): void;
-    toggleCrossHatches(): void;
-    setCrossHatches(cross: boolean): void;
-} & {
-    readonly adapterTypeName: any;
-    readonly rendererTypeNameSimple: any;
-    readonly filters: undefined;
-    readonly scaleType: any;
-    readonly maxScore: any;
-    readonly minScore: any;
-} & {
-    readonly adapterCapabilities: string[];
-    readonly rendererConfig: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
-    readonly autoscaleType: any;
-} & {
-    readonly domain: number[] | undefined;
-} & {
-    readonly filled: boolean;
-    readonly summaryScoreModeSetting: string;
-    readonly scaleOpts: {
-        domain: number[] | undefined;
-        stats: {
-            scoreMin: number;
-            scoreMax: number;
-        } | undefined;
-        autoscaleType: any;
-        scaleType: any;
-        inverted: any;
-    };
-    readonly canHaveFill: boolean;
-    readonly displayCrossHatchesSetting: boolean;
-    readonly hasResolution: boolean;
-    readonly hasGlobalStats: boolean;
-} & {
-    scoreTrackMenuItems(): ({
-        label: string;
-        subMenu: {
-            label: string;
-            onClick: () => void;
-        }[];
-        onClick?: undefined;
-    } | {
-        label: string;
-        subMenu: {
-            label: string;
-            type: string;
-            checked: boolean;
-            onClick: () => void;
-        }[];
-        onClick?: undefined;
-    } | {
-        label: string;
-        onClick: () => void;
-        subMenu?: undefined;
-    })[];
-} & {
-    reload(): Promise<void>;
-} & {
-    readonly TooltipComponent: import("react").FC<{}>;
-    readonly rendererTypeName: string; /**
-     * #property
-     */
-} & {
-    readonly ticks: {
-        range: number[];
-        values: number[];
-        format: (d: import("d3-scale").NumberValue) => string;
-        position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>;
-    } | undefined;
-} & {
-    renderProps(): any;
-    readonly needsScalebar: boolean;
-    readonly fillSetting: 0 | 1 | 2;
-} & {
-    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
-        label: string;
-        subMenu: ({
-            label: string;
-            subMenu: {
-                label: string;
-                onClick: () => void;
-            }[];
-            onClick?: undefined;
-        } | {
-            label: string;
-            subMenu: {
-                label: string;
-                type: string;
-                checked: boolean;
-                onClick: () => void;
-            }[];
-            onClick?: undefined;
-        } | {
-            label: string;
-            onClick: () => void;
-            subMenu?: undefined;
-        })[];
-        type?: undefined;
-        checked?: undefined;
-        onClick?: undefined;
-    } | {
-        label: string;
-        subMenu: {
-            label: string;
-            type: string;
-            checked: boolean; /**
-             * #getter
-             */
-            onClick: () => void;
-        }[];
-        type?: undefined;
-        checked?: undefined;
-        onClick?: undefined;
-    } | {
-        type: string;
-        label: string;
-        checked: boolean;
-        onClick: () => void;
-        subMenu?: undefined;
-    })[];
-} & {
-    afterAttach(): void;
-    renderSvg(opts: import("@jbrowse/plugin-linear-genome-view").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
-} & {
-    modificationTagMap: import("mobx").ObservableMap<string, string>;
-    modificationsReady: boolean;
-} & {
-    /**
-     * #action
-     */
-    setConfig(configuration: AnyConfigurationModel): void;
     /**
-     * #action
-     */
-    setFilterBy(filter: {
-        flagInclude: number;
-        flagExclude: number;
-        readName?: string;
-        tagFilter?: {
-            tag: string;
-            value: string;
-        };
-    }): void;
-    /**
-     * #action
-     */
-    setColorBy(colorBy?: {
-        type: string;
-        tag?: string;
-    }): void;
-    /**
-     * #action
-     */
-    updateModificationColorMap(uniqueModifications: string[]): void;
-} & {
-    /**
-     * #getter
-     */
-    readonly rendererConfig: {
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
-    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
-    /**
-     * #getter
-     */
-    readonly drawArcsSetting: any;
-    /**
-     * #getter
-     */
-    readonly drawInterbaseCountsSetting: any;
-    /**
-     * #getter
-     */
-    readonly drawIndicatorsSetting: any;
-    /**
-     * #getter
-     */
-    readonly autorunReady: boolean;
-    readonly renderReady: boolean;
-    readonly ready: boolean;
-    /**
-     * #method
-     */
-    renderProps(): any;
-} & {
-    /**
-     * #action
-     */
-    setModificationsReady(flag: boolean): void;
-    /**
-     * #action
-     */
-    toggleDrawIndicators(): void;
-    /**
-     * #action
-     */
-    toggleDrawInterbaseCounts(): void;
-    /**
-     * #action
-     */
-    toggleDrawArcs(): void;
-} & {
-    afterAttach(): void;
-} & {
-    /**
-     * #getter
-     */
-    readonly TooltipComponent: (props: {
-        model: {
-            featureUnderMouse: import("@jbrowse/core/util").Feature;
-        };
-        height: number;
-        offsetMouseCoord: [number, number];
-        clientMouseCoord: [number, number];
-        clientRect?: DOMRect | undefined;
-    }) => import("react").JSX.Element | null;
-    /**
-     * #getter
-     */
-    readonly adapterConfig: {
-        type: string;
-        subadapter: any;
-    };
-    /**
-     * #getter
-     */
-    readonly rendererTypeName: string | undefined;
-    /**
-     * #getter
-     */
-    readonly needsScalebar: boolean;
-    /**
-     * #method
-     */
-    contextMenuItems(): never[];
-    /**
-     * #method
+     * #property
      */
-    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
-        label: string;
-        type: string;
-        checked: any;
-        onClick: () => void;
-    })[];
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+    jexlFilters: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>, [undefined]>;
+}, never, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type SNPCoverageDisplayModel = ReturnType<typeof stateModelFactory>;
 export default stateModelFactory;