@jbrowse/plugin-alignments 2.6.2 → 2.7.0

package/esm/LinearPileupDisplay/components/SetMaxHeight.js

@@ -8,7 +8,7 @@ const useStyles = makeStyles()({
         width: 500,
     },
 });
-function SetMaxHeightDlg(props) {
+const SetMaxHeightDialog = observer(function (props) {
     const { model, handleClose } = props;
     const { classes } = useStyles();
     const { maxHeight = '' } = model;
@@ -23,5 +23,5 @@ function SetMaxHeightDlg(props) {
                         handleClose();
                     } }, "Submit"),
                 React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel")))));
-}
-export default observer(SetMaxHeightDlg);
+});
+export default SetMaxHeightDialog;

package/esm/LinearPileupDisplay/components/SortByTag.d.ts

@@ -1,9 +1,8 @@
 import React from 'react';
-declare function SortByTagDlg(props: {
+declare const SortByTagDialog: (props: {
     model: {
         setSortedBy: Function;
     };
     handleClose: () => void;
-}): React.JSX.Element;
-declare const _default: typeof SortByTagDlg;
-export default _default;
+}) => React.JSX.Element;
+export default SortByTagDialog;

package/esm/LinearPileupDisplay/components/SortByTag.js

@@ -2,7 +2,7 @@ import React, { useState } from 'react';
 import { observer } from 'mobx-react';
 import { Button, DialogActions, DialogContent, TextField, Typography, } from '@mui/material';
 import { Dialog } from '@jbrowse/core/ui';
-function SortByTagDlg(props) {
+const SortByTagDialog = observer(function (props) {
     const { model, handleClose } = props;
     const [tag, setTag] = useState('');
     const validTag = tag.match(/^[A-Za-z][A-Za-z0-9]$/);
@@ -20,5 +20,5 @@ function SortByTagDlg(props) {
                         handleClose();
                     } }, "Submit"),
                 React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel")))));
-}
-export default observer(SortByTagDlg);
+});
+export default SortByTagDialog;

package/esm/LinearPileupDisplay/index.d.ts

@@ -2,3 +2,4 @@ import PluginManager from '@jbrowse/core/PluginManager';
 export default function register(pluginManager: PluginManager): void;
 export { default as linearPileupDisplayStateModelFactory } from './model';
 export { default as linearPileupDisplayConfigSchemaFactory } from './configSchema';
+export { SharedLinearPileupDisplayMixin } from './SharedLinearPileupDisplayMixin';

package/esm/LinearPileupDisplay/index.js

@@ -19,3 +19,4 @@ export default function register(pluginManager) {
 }
 export { default as linearPileupDisplayStateModelFactory } from './model';
 export { default as linearPileupDisplayConfigSchemaFactory } from './configSchema';
+export { SharedLinearPileupDisplayMixin } from './SharedLinearPileupDisplayMixin';

package/esm/LinearPileupDisplay/model.d.ts

@@ -1,17 +1,6 @@
 /// <reference types="react" />
 import { Instance } from 'mobx-state-tree';
-import { AnyConfigurationModel, AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
-import { Feature } from '@jbrowse/core/util';
-import { ContentCopy as ContentCopyIcon } from '@jbrowse/core/ui/Icons';
-export interface Filter {
-    flagInclude: number;
-    flagExclude: number;
-    readName?: string;
-    tagFilter?: {
-        tag: string;
-        value: string;
-    };
-}
+import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 /**
  * #stateModel LinearPileupDisplay
  * #category display
@@ -46,27 +35,30 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         renderInProgress: AbortController | undefined;
         filled: boolean;
         reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-        features: Map<string, Feature> | undefined;
+        features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
         layout: any;
         status: string;
         error: unknown;
         message: string | undefined;
         maxHeightReached: boolean;
+        /**
+         * #property
+         */
         ReactComponent: ({ model, }: {
             model: any;
         }) => any;
-        renderProps: any;
+        renderProps: any; /**
+         * #property
+         */
     } & {
         doReload(): void;
         afterAttach(): void;
-        setStatus(message: string): void; /**
-         * #property
-         */
+        setStatus(message: string): void;
         setLoading(abortController: AbortController): void;
         setMessage(messageText: string): void;
         setRendered(props: {
             reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
-            features: Map<string, Feature>;
+            features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
             maxHeightReached: boolean;
             renderProps: any;
@@ -86,6 +78,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             defaultValue: number;
             description: string;
         };
+        /**
+         * #stateModel LinearPileupDisplay
+         * #category display
+         * extends `BaseLinearDisplay`
+         */
         height: {
             type: string;
             defaultValue: number;
@@ -99,21 +96,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         };
     }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 } & {
-    type: import("mobx-state-tree").ISimpleType<"LinearPileupDisplay">;
     configuration: AnyConfigurationSchemaType;
-    showSoftClipping: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     featureHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
     noSpacing: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     fadeLikelihood: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
     trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    mismatchAlpha: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
-    sortedBy: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
-        type: import("mobx-state-tree").ISimpleType<string>;
-        pos: import("mobx-state-tree").ISimpleType<number>;
-        tag: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        refName: import("mobx-state-tree").ISimpleType<string>;
-        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     colorBy: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
         type: import("mobx-state-tree").ISimpleType<string>;
         tag: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
@@ -128,6 +115,19 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             value: import("mobx-state-tree").ISimpleType<string>;
         }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
+    jexlFilters: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").ISimpleType<string>>, [undefined]>;
+} & {
+    type: import("mobx-state-tree").ISimpleType<"LinearPileupDisplay">;
+    configuration: AnyConfigurationSchemaType;
+    showSoftClipping: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
+    mismatchAlpha: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
+    sortedBy: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
+        type: import("mobx-state-tree").ISimpleType<string>;
+        pos: import("mobx-state-tree").ISimpleType<number>;
+        tag: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+        refName: import("mobx-state-tree").ISimpleType<string>;
+        assemblyName: import("mobx-state-tree").ISimpleType<string>;
+    }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 }, {
     rendererTypeName: string;
     error: unknown;
@@ -161,12 +161,17 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             rpcDriverName: string | undefined;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
             rendererTypeName: string;
+            /**
+             * #action
+             */
             error: unknown;
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
             id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
             type: import("mobx-state-tree").ISimpleType<string>;
-            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+            rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; /**
+             * #action
+             */
         }, {
             rendererTypeName: string;
             error: unknown;
@@ -174,9 +179,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
     }> | null;
     readonly adapterConfig: any;
-    readonly parentTrack: any; /**
-     * #property
-     */
+    readonly parentTrack: any;
     renderProps(): any;
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
     readonly DisplayMessageComponent: import("react").FC<any> | undefined;
@@ -195,7 +198,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
 } & {
     setScrollTop(scrollTop: number): void;
     setHeight(displayHeight: number): number;
-    resizeHeight(distance: number): number;
+    resizeHeight(distance: number): number; /**
+     * #property
+     */
 } & {
     featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
     featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
@@ -210,7 +215,9 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     afterAttach(): void;
 } & {
     setCurrStatsBpPerPx(n: number): void;
-    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void; /**
+     * #action
+     */
     getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
     setFeatureDensityStatsP(arg: any): void;
     setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
@@ -223,7 +230,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
 } & {
     featureIdUnderMouse: string | undefined;
-    contextMenuFeature: Feature | undefined;
+    contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
 } & {
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -233,20 +240,22 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly selectedFeatureId: string | undefined;
     readonly DisplayMessageComponent: import("react").FC<any> | undefined;
 } & {
-    readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>;
-    readonly featureUnderMouse: Feature | undefined;
-    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined; /**
-     * #action
-     */
+    readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
+    readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
+    getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
     getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
-    searchFeatureByID(id: string): [number, number, number, number] | undefined;
+    searchFeatureByID(id: string): [number, number, number, number] | undefined; /**
+     * #getter
+     */
 } & {
     addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
     deleteBlock(key: string): void;
-    selectFeature(feature: Feature): void;
-    clearFeatureSelection(): void;
+    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    clearFeatureSelection(): void; /**
+     * #method
+     */
     setFeatureIdUnderMouse(feature?: string | undefined): void;
-    setContextMenuFeature(feature?: Feature | undefined): void;
+    setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
 } & {
     reload(): Promise<void>;
 } & {
@@ -258,75 +267,114 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     afterAttach(): void;
 } & {
     colorTagMap: import("mobx").ObservableMap<string, string>;
-    modificationTagMap: import("mobx").ObservableMap<string, string>;
-    featureUnderMouseVolatile: Feature | undefined;
-    currSortBpPerPx: number;
-    modificationsReady: boolean;
-    sortReady: boolean;
+    featureUnderMouseVolatile: import("@jbrowse/core/util").Feature | undefined;
     tagsReady: boolean;
 } & {
     readonly autorunReady: boolean;
 } & {
-    /**
-     * #action
-     */
-    setModificationsReady(flag: boolean): void;
-    /**
-     * #action
-     */
     setTagsReady(flag: boolean): void;
-    /**
-     * #action
-     */
-    setSortReady(flag: boolean): void;
-    /**
-     * #action
-     */
-    setCurrSortBpPerPx(n: number): void;
-    /**
-     * #action
-     */
     setMaxHeight(n: number): void;
-    /**
-     * #action
-     */
-    setFeatureHeight(n?: number): void;
-    /**
-     * #action
-     */
-    setNoSpacing(flag?: boolean): void;
-    /**
-     * #action
-     */
+    setFeatureHeight(n?: number | undefined): void;
+    setNoSpacing(flag?: boolean | undefined): void;
     setColorScheme(colorScheme: {
         type: string;
-        tag?: string;
+        tag?: string | undefined;
+        extra?: import("../shared/color").ExtraColorBy | undefined;
     }): void;
-    /**
-     * #action
+    updateColorTagMap(uniqueTag: string[]): void;
+    setFeatureUnderMouse(feat?: import("@jbrowse/core/util").Feature | undefined): void;
+    selectFeature(feature: import("@jbrowse/core/util").Feature): void;
+    copyFeatureToClipboard(feature: import("@jbrowse/core/util").Feature): void; /**
+     * #method
      */
-    updateModificationColorMap(uniqueModifications: string[]): void;
+    setConfig(conf: {
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any; /**
+         * #property
+         */
+    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>): void;
+    setFilterBy(filter: import("../shared").IFilter): void;
+    setJexlFilters(filters: string[]): void;
+} & {
+    readonly rendererConfig: {
+        [x: string]: any;
+    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+        setSubschema(slotName: string, data: unknown): any; /**
+         * #property
+         */
+    } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
+} & {
+    readonly maxHeight: any;
+    readonly featureHeightSetting: any;
+    readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
+    renderReady(): boolean;
+    readonly filters: import("@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain").default;
+} & {
+    readonly rendererTypeName: string;
+    contextMenuItems(): ({
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+    } | {
+        label: string;
+        icon: typeof import("@jbrowse/core/ui/Icons").ContentCopy;
+        onClick: () => void;
+    })[];
+    readonly DisplayBlurb: ({ model, }: {
+        model: {
+            sortedBy?: {
+                pos: number;
+                refName: number;
+                type: string;
+                tag?: string | undefined;
+            } | undefined;
+        };
+    }) => import("react").JSX.Element | null;
+    renderPropsPre(): any;
+    colorSchemeSubMenuItems(): {
+        label: string;
+        onClick: () => void;
+    }[];
+    trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
+        label: string;
+        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
+            muiName: string;
+        };
+        onClick: () => void;
+    })[];
+} & {
+    renderProps(): any;
+} & {
+    afterAttach(): void;
+} & {
+    sortReady: boolean;
+    currSortBpPerPx: number;
+    modificationTagMap: import("mobx").ObservableMap<string, string>;
+    modificationsReady: boolean;
+} & {
     /**
      * #action
      */
-    updateColorTagMap(uniqueTag: string[]): void;
+    setCurrSortBpPerPx(n: number): void;
     /**
      * #action
      */
-    setFeatureUnderMouse(feat?: Feature): void;
+    updateModificationColorMap(uniqueModifications: string[]): void;
     /**
      * #action
      */
-    selectFeature(feature: Feature): void;
+    setModificationsReady(flag: boolean): void;
     /**
      * #action
      */
-    clearSelected(): void;
+    setSortReady(flag: boolean): void;
     /**
      * #action
-     * uses copy-to-clipboard and generates notification
      */
-    copyFeatureToClipboard(feature: Feature): void;
+    clearSelected(): void;
     /**
      * #action
      */
@@ -335,15 +383,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
      * #action
      */
     toggleMismatchAlpha(): void;
-    /**
-     * #action
-     */
-    setConfig(conf: AnyConfigurationModel): void;
     /**
      * #action
      */
     setSortedBy(type: string, tag?: string): void;
-    setFilterBy(filter: Filter): void;
 } & {
     /**
      * #action
@@ -356,17 +399,11 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: unknown): any; /**
+         * #property
+         */
     } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
 } & {
-    /**
-     * #getter
-     */
-    readonly maxHeight: any;
-    /**
-     * #getter
-     */
-    readonly featureHeightSetting: any;
     /**
      * #getter
      */
@@ -374,34 +411,8 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     /**
      * #getter
      */
-    readonly featureUnderMouse: Feature | undefined;
-    /**
-     * #getter
-     */
-    readonly renderReady: boolean;
+    renderReady(): boolean;
 } & {
-    /**
-     * #getter
-     */
-    readonly rendererTypeName: string;
-    /**
-     * #method
-     */
-    contextMenuItems(): ({
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-    } | {
-        label: string;
-        icon: typeof ContentCopyIcon;
-        onClick: () => void;
-    })[];
-    /**
-     * #getter
-     */
-    readonly DisplayBlurb: (props: import("./components/LinearPileupDisplayBlurb").LinearPileupDisplayBlurbProps) => import("react").JSX.Element | null;
     /**
      * #method
      */
@@ -438,27 +449,15 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         onClick?: undefined;
     } | {
         label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
         subMenu: {
             label: string;
             onClick: () => void;
         }[];
+        icon?: undefined;
         type?: undefined;
         checked?: undefined;
         onClick?: undefined;
         disabled?: undefined;
-    } | {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-        type?: undefined;
-        checked?: undefined;
-        disabled?: undefined;
-        subMenu?: undefined;
     } | {
         label: string;
         type: string;
@@ -470,98 +469,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     })[];
 } & {
     afterAttach(): void;
-}, {
-    type: string;
-} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<string>;
-    rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-} & {
-    heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-    userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-} & {
-    blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-        key: import("mobx-state-tree").ISimpleType<string>;
-        region: import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-        reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-        isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    }, {
-        renderInProgress: AbortController | undefined;
-        filled: boolean;
-        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-        features: Map<string, Feature> | undefined;
-        layout: any;
-        status: string;
-        error: unknown;
-        message: string | undefined;
-        maxHeightReached: boolean;
-        ReactComponent: ({ model, }: {
-            model: any;
-        }) => any;
-        renderProps: any;
-    } & {
-        doReload(): void;
-        afterAttach(): void;
-        setStatus(message: string): void; /**
-         * #property
-         */
-        setLoading(abortController: AbortController): void;
-        setMessage(messageText: string): void;
-        setRendered(props: {
-            reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
-            features: Map<string, Feature>;
-            layout: any;
-            maxHeightReached: boolean;
-            renderProps: any;
-        } | undefined): void;
-        setError(error: unknown): void;
-        reload(): void;
-        beforeDestroy(): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-        maxFeatureScreenDensity: {
-            type: string;
-            description: string;
-            defaultValue: number;
-        };
-        fetchSizeLimit: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        height: {
-            type: string;
-            defaultValue: number;
-            description: string;
-        };
-        mouseover: {
-            type: string;
-            description: string;
-            defaultValue: string;
-            contextVariable: string[];
-        };
-    }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
-    type: string;
-    id: string;
-    configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-    rpcDriverName: string | undefined;
-    heightPreConfig: number | undefined;
-    userBpPerPxLimit: number | undefined;
-    userByteSizeLimit: number | undefined;
-} & import("mobx-state-tree")._NotCustomized>;
+}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export type LinearPileupDisplayStateModel = ReturnType<typeof stateModelFactory>;
 export type LinearPileupDisplayModel = Instance<LinearPileupDisplayStateModel>;
 export default stateModelFactory;