@jbrowse/plugin-alignments 2.6.2 → 2.7.0

package/esm/shared/color.d.ts

@@ -1,3 +1,4 @@
+import { Instance } from 'mobx-state-tree';
 import { ChainStats } from './fetchChains';
 export declare const fillColor: {
     color_fwd_strand_not_proper: string;
@@ -53,3 +54,12 @@ export declare function getPairedInsertSizeAndOrientationColor(f1: {
 export declare function getPairedOrientationColor(f: {
     pair_orientation?: string;
 }): readonly [string, string];
+export interface ExtraColorBy {
+    custom?: Record<string, string>;
+}
+export declare const ColorByModel: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
+    type: import("mobx-state-tree").ISimpleType<string>;
+    tag: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    extra: import("mobx-state-tree").IType<any, any, any>;
+}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+export type IColorByModel = Instance<typeof ColorByModel>;

package/esm/shared/color.js

@@ -1,3 +1,4 @@
+import { types } from 'mobx-state-tree';
 import { orientationTypes, pairMap } from '../util';
 export const fillColor = {
     color_fwd_strand_not_proper: '#ECC8C8',
@@ -68,3 +69,8 @@ export function getPairedOrientationColor(f) {
         strokeColor[type2] || strokeColor.color_unknown,
     ];
 }
+export const ColorByModel = types.maybe(types.model({
+    type: types.string,
+    tag: types.maybe(types.string),
+    extra: types.frozen(),
+}));

package/esm/shared/fetchChains.js

@@ -1,6 +1,7 @@
 import { getContainingTrack, getContainingView, getSession, } from '@jbrowse/core/util';
 import { getSnapshot } from 'mobx-state-tree';
 export async function fetchChains(self) {
+    // @ts-expect-error
     const { rpcSessionId: sessionId } = getContainingTrack(self);
     const { rpcManager } = getSession(self);
     const view = getContainingView(self);

package/esm/shared/index.d.ts

@@ -33,4 +33,13 @@ export declare const FilterModel: import("mobx-state-tree").IModelType<{
         value: import("mobx-state-tree").ISimpleType<string>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+export interface IFilter {
+    flagExclude: number;
+    flagInclude: number;
+    readName?: string;
+    tagFilter?: {
+        tag: string;
+        value: string;
+    };
+}
 export {};

package/esm/util.d.ts

@@ -5,15 +5,9 @@ import { IAutorunOptions } from 'mobx';
 export declare function getTag(feature: Feature, tag: string): any;
 export declare function getTagAlt(feature: Feature, tag: string, alt: string): any;
 export declare const orientationTypes: {
-    fr: {
-        [key: string]: string;
-    };
-    rf: {
-        [key: string]: string;
-    };
-    ff: {
-        [key: string]: string;
-    };
+    fr: Record<string, string>;
+    rf: Record<string, string>;
+    ff: Record<string, string>;
 };
 export declare const pairMap: {
     readonly LR: "color_pair_lr";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-alignments",
-  "version": "2.6.2",
+  "version": "2.7.0",
   "description": "JBrowse 2 alignments adapters, tracks, etc.",
   "keywords": [
     "jbrowse",
@@ -41,7 +41,6 @@
     "@mui/icons-material": "^5.0.1",
     "canvas2svg": "^1.0.16",
     "clone": "^2.1.2",
-    "color": "^3.1.2",
     "copy-to-clipboard": "^3.3.1",
     "fast-deep-equal": "^3.1.3",
     "generic-filehandle": "^3.0.0"
@@ -52,7 +51,7 @@
     "@jbrowse/plugin-wiggle": "^2.0.0",
     "@mui/material": "^5.0.0",
     "mobx": "^6.0.0",
-    "mobx-react": "^7.0.0",
+    "mobx-react": "^9.0.0",
     "mobx-state-tree": "^5.0.0",
     "react": ">=16.8.0",
     "rxjs": "^7.0.0",
@@ -64,5 +63,5 @@
   "distModule": "esm/index.js",
   "srcModule": "src/index.ts",
   "module": "esm/index.js",
-  "gitHead": "bbea587a402d9974acdd804a33f4b77f31a2fd5f"
+  "gitHead": "dbe7fb1af01fc89f833d2744635eb44a17365b41"
 }