@jbrowse/core 5.0.0-beta.8 → 5.0.0-beta.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +427 -130
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +5 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +3 -5
- package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +8 -9
- package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +8 -13
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +2 -1
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +3 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
- package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +5 -3
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +1 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +1 -4
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +53 -0
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -8
- package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +0 -16
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +7 -34
- package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
- package/esm/BaseFeatureWidget/formatDetails.d.ts +13 -29
- package/esm/BaseFeatureWidget/formatDetails.js +46 -79
- package/esm/BaseFeatureWidget/index.d.ts +1 -0
- package/esm/BaseFeatureWidget/stateModelFactory.d.ts +35 -28
- package/esm/BaseFeatureWidget/stateModelFactory.js +94 -102
- package/esm/BaseFeatureWidget/types.d.ts +3 -0
- package/esm/BaseFeatureWidget/util.d.ts +0 -3
- package/esm/BaseFeatureWidget/util.js +0 -17
- package/esm/PluginLoader.d.ts +14 -9
- package/esm/PluginLoader.js +34 -26
- package/esm/PluginManager.d.ts +4 -4
- package/esm/PluginManager.js +1 -1
- package/esm/ReExports/coreModules.generated.d.ts +2 -0
- package/esm/ReExports/coreModules.generated.js +492 -0
- package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/coreWorkerModules.generated.js +453 -0
- package/esm/ReExports/frameworkModules.d.ts +2 -0
- package/esm/ReExports/frameworkModules.js +67 -0
- package/esm/ReExports/frameworkShared.d.ts +12 -0
- package/esm/ReExports/frameworkShared.js +16 -0
- package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
- package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
- package/esm/ReExports/list.js +493 -79
- package/esm/ReExports/modules.d.ts +1 -1
- package/esm/ReExports/modules.js +10 -87
- package/esm/ReExports/registry.d.ts +1 -0
- package/esm/ReExports/registry.js +23 -5
- package/esm/ReExports/uiStub.d.ts +2 -1
- package/esm/ReExports/uiStub.js +24 -2
- package/esm/ReExports/workerModules.js +8 -12
- package/esm/TextSearch/TextSearchManager.d.ts +3 -12
- package/esm/TextSearch/TextSearchManager.js +22 -10
- package/esm/assemblyManager/assembly.d.ts +10 -14
- package/esm/assemblyManager/assembly.js +10 -14
- package/esm/assemblyManager/assemblyConfigSchema.d.ts +23 -81
- package/esm/assemblyManager/assemblyManager.d.ts +10 -16
- package/esm/assemblyManager/assemblyManager.js +7 -10
- package/esm/assemblyManager/loadRefNameMap.js +3 -3
- package/esm/configuration/configurationSchema.d.ts +75 -31
- package/esm/configuration/configurationSchema.js +74 -40
- package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
- package/esm/configuration/configurationSchemaUnion.js +59 -0
- package/esm/configuration/configurationSlot.d.ts +37 -12
- package/esm/configuration/configurationSlot.js +83 -22
- package/esm/configuration/formatAboutConfigSchema.d.ts +7 -21
- package/esm/configuration/formatDetailsConfigSchema.d.ts +11 -37
- package/esm/configuration/formatDetailsConfigSchema.js +10 -13
- package/esm/configuration/getConf.d.ts +17 -9
- package/esm/configuration/getConf.js +52 -7
- package/esm/configuration/index.d.ts +11 -4
- package/esm/configuration/index.js +7 -4
- package/esm/configuration/mergeFormatCallbacks.d.ts +6 -7
- package/esm/configuration/mergeFormatCallbacks.js +13 -10
- package/esm/configuration/readConfObject.d.ts +2 -22
- package/esm/configuration/readConfObject.js +15 -49
- package/esm/configuration/requirements.d.ts +37 -0
- package/esm/configuration/requirements.js +88 -0
- package/esm/configuration/schemaRegistry.d.ts +21 -1
- package/esm/configuration/schemaRegistry.js +11 -0
- package/esm/configuration/schemaTypes.d.ts +3 -0
- package/esm/configuration/schemaTypes.js +10 -0
- package/esm/configuration/slotFacade.d.ts +35 -4
- package/esm/configuration/slotFacade.js +96 -9
- package/esm/configuration/snapshotPreprocess.d.ts +27 -0
- package/esm/configuration/snapshotPreprocess.js +102 -0
- package/esm/configuration/types.d.ts +161 -22
- package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +2 -2
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +11 -2
- package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +12 -1
- package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +2 -3
- package/esm/data_adapters/BaseAdapter/featureDensity.js +2 -3
- package/esm/data_adapters/BaseAdapter/index.d.ts +22 -3
- package/esm/data_adapters/BaseAdapter/types.d.ts +3 -4
- package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
- package/esm/data_adapters/BaseAdapter/zoomRange.js +1 -0
- package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -11
- package/esm/data_adapters/getSequenceSubAdapter.d.ts +1 -3
- package/esm/data_adapters/getSequenceSubAdapter.js +1 -3
- package/esm/pluggableElementTypes/AdapterType.d.ts +7 -7
- package/esm/pluggableElementTypes/RpcMethodType.d.ts +1 -1
- package/esm/pluggableElementTypes/RpcMethodType.js +3 -8
- package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +1 -2
- package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
- package/esm/pluggableElementTypes/index.d.ts +1 -1
- package/esm/pluggableElementTypes/index.js +1 -1
- package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +17 -7
- package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +45 -48
- package/esm/pluggableElementTypes/models/BaseDisplayModel.js +40 -36
- package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +10 -13
- package/esm/pluggableElementTypes/models/BaseTrackModel.js +6 -6
- package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +37 -17
- package/esm/pluggableElementTypes/models/BaseViewModel.js +25 -10
- package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +26 -16
- package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +1 -1
- package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -18
- package/esm/pluggableElementTypes/models/baseConnectionConfig.js +5 -5
- package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +26 -31
- package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +57 -141
- package/esm/pluggableElementTypes/models/baseTrackConfig.js +22 -26
- package/esm/pluggableElementTypes/models/components/SaveTrackData.js +2 -2
- package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +3 -4
- package/esm/pluggableElementTypes/models/components/fetchTrackData.js +3 -3
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +15 -7
- package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +38 -29
- package/esm/pluggableElementTypes/models/index.d.ts +1 -2
- package/esm/pluggableElementTypes/models/index.js +1 -2
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +3 -3
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +4 -4
- package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +3 -3
- package/esm/rpc/BaseRpcDriver.d.ts +1 -2
- package/esm/rpc/BaseRpcDriver.js +23 -30
- package/esm/rpc/MainThreadRpcDriver.d.ts +2 -2
- package/esm/rpc/MainThreadRpcDriver.js +13 -8
- package/esm/rpc/RpcClient.d.ts +17 -6
- package/esm/rpc/RpcClient.js +42 -12
- package/esm/rpc/RpcManager.d.ts +8 -10
- package/esm/rpc/RpcManager.js +1 -1
- package/esm/rpc/RpcRegistry.d.ts +8 -2
- package/esm/rpc/RpcServer.d.ts +3 -1
- package/esm/rpc/RpcServer.js +19 -12
- package/esm/rpc/WebWorkerRpcDriver.d.ts +3 -3
- package/esm/rpc/WebWorkerRpcDriver.js +9 -47
- package/esm/rpc/byteBudget.d.ts +3 -5
- package/esm/rpc/byteBudget.js +4 -4
- package/esm/rpc/configSchema.d.ts +7 -21
- package/esm/rpc/coreRpcMethods.d.ts +1 -0
- package/esm/rpc/coreRpcMethods.js +1 -0
- package/esm/rpc/methods/CoreEncodeFeatures.d.ts +6 -5
- package/esm/rpc/methods/CoreEncodeFeatures.js +26 -31
- package/esm/rpc/methods/CoreGetEncodedFeature.d.ts +13 -0
- package/esm/rpc/methods/CoreGetEncodedFeature.js +31 -0
- package/esm/rpc/methods/CoreGetExportData.js +2 -2
- package/esm/rpc/methods/CoreGetFeatureDensity.js +2 -2
- package/esm/rpc/methods/CoreGetFeatures.js +2 -2
- package/esm/rpc/methods/CoreGetSequence.js +2 -2
- package/esm/rpc/methods/layerFeatures.d.ts +26 -0
- package/esm/rpc/methods/layerFeatures.js +40 -0
- package/esm/svg/SvgExport.js +3 -4
- package/esm/svg/SvgThemeProviders.d.ts +12 -0
- package/esm/svg/SvgThemeProviders.js +15 -0
- package/esm/svg/exportViewSvg.d.ts +32 -0
- package/esm/svg/exportViewSvg.js +13 -0
- package/esm/svg/normalizeSvgMarkup.d.ts +7 -0
- package/esm/svg/normalizeSvgMarkup.js +99 -0
- package/esm/svg/serializeSvg.d.ts +7 -0
- package/esm/svg/serializeSvg.js +11 -0
- package/esm/svg/svgReady.d.ts +8 -7
- package/esm/svg/svgReady.js +8 -7
- package/esm/svg/trackNames.d.ts +5 -5
- package/esm/svg/trackNames.js +6 -6
- package/esm/svg/wrapSvgExport.js +6 -74
- package/esm/ui/CascadingMenu.js +83 -86
- package/esm/ui/ErrorMessageStackTraceDialog.js +0 -5
- package/esm/ui/FileSelector/useInternetAccounts.d.ts +156 -96
- package/esm/ui/HoverMenu.d.ts +1 -2
- package/esm/ui/HoverMenu.js +6 -3
- package/esm/ui/JexlFilterDialog.d.ts +13 -10
- package/esm/ui/JexlFilterDialog.js +122 -49
- package/esm/ui/JexlFilterRowEditors.d.ts +15 -0
- package/esm/ui/JexlFilterRowEditors.js +90 -0
- package/esm/ui/LazyBaseTooltip.d.ts +4 -0
- package/esm/ui/LazyBaseTooltip.js +9 -0
- package/esm/ui/LoadingOverlay.js +3 -1
- package/esm/ui/MonospaceTextField.d.ts +2 -1
- package/esm/ui/MonospaceTextField.js +21 -19
- package/esm/ui/PaletteContext.d.ts +7 -9
- package/esm/ui/PaletteContext.js +24 -10
- package/esm/ui/RefNameAutocomplete/index.d.ts +1 -2
- package/esm/ui/RefNameAutocomplete/index.js +1 -1
- package/esm/ui/ScrollChrome.d.ts +6 -9
- package/esm/ui/ScrollChrome.js +5 -6
- package/esm/ui/ScrollEdgeShadow.d.ts +6 -9
- package/esm/ui/ScrollEdgeShadow.js +9 -24
- package/esm/ui/SettingsChangesTable.js +3 -3
- package/esm/ui/VerticalScrollbar.d.ts +13 -34
- package/esm/ui/VerticalScrollbar.js +29 -83
- package/esm/ui/ViewLoadingScreen.d.ts +2 -2
- package/esm/ui/ViewLoadingScreen.js +3 -3
- package/esm/ui/colorScale.d.ts +26 -1
- package/esm/ui/colorScale.js +28 -5
- package/esm/ui/colors.d.ts +49 -1
- package/esm/ui/colors.js +139 -4
- package/esm/ui/hoverBoxStyle.d.ts +14 -2
- package/esm/ui/hoverBoxStyle.js +17 -2
- package/esm/ui/index.d.ts +5 -3
- package/esm/ui/index.js +9 -7
- package/esm/ui/launchViewMenu.js +3 -3
- package/esm/ui/legendSpec.d.ts +2 -0
- package/esm/ui/legendSpec.js +3 -0
- package/esm/ui/palette.d.ts +0 -1
- package/esm/ui/palette.js +3 -27
- package/esm/ui/replaceViewAction.d.ts +1 -1
- package/esm/ui/replaceViewAction.js +1 -1
- package/esm/ui/theme.d.ts +1 -1
- package/esm/ui/theme.js +6 -40
- package/esm/ui/viewHeaderHeight.d.ts +1 -0
- package/esm/ui/viewHeaderHeight.js +1 -0
- package/esm/util/Base1DUtils.d.ts +1 -1
- package/esm/util/Base1DUtils.js +2 -2
- package/esm/util/SvgCanvas.d.ts +15 -13
- package/esm/util/SvgCanvas.js +72 -53
- package/esm/util/aborting.d.ts +39 -0
- package/esm/util/aborting.js +84 -0
- package/esm/util/adapterMetadata.d.ts +1 -1
- package/esm/util/adapterMetadata.js +6 -6
- package/esm/util/addAndShowTrack.d.ts +1 -4
- package/esm/util/addRelativeUris.d.ts +10 -2
- package/esm/util/addRelativeUris.js +22 -7
- package/esm/util/addTrackFromWidget.d.ts +2 -5
- package/esm/util/animationAllowed.d.ts +9 -0
- package/esm/util/animationAllowed.js +13 -0
- package/esm/util/applyRowResizeWheel.d.ts +10 -5
- package/esm/util/applyRowResizeWheel.js +10 -21
- package/esm/util/bandLayout.d.ts +4 -4
- package/esm/util/bandLayout.js +4 -4
- package/esm/util/bezierConnector.js +5 -4
- package/esm/util/bgzfWorkerPool.d.ts +20 -74
- package/esm/util/bgzfWorkerPool.js +20 -74
- package/esm/util/cachedSetup.d.ts +1 -1
- package/esm/util/cachedSetup.js +2 -2
- package/esm/util/categoricalField.d.ts +37 -0
- package/esm/util/categoricalField.js +52 -0
- package/esm/util/color/cssColorsLevel4.d.ts +1 -0
- package/esm/util/color/cssColorsLevel4.js +1 -0
- package/esm/util/color/index.d.ts +5 -3
- package/esm/util/color/index.js +7 -4
- package/esm/util/colorBits.d.ts +1 -2
- package/esm/util/colorBits.js +17 -39
- package/esm/util/colorRamp.d.ts +27 -1
- package/esm/util/colorRamp.js +56 -2
- package/esm/util/colorSchemes.d.ts +9 -0
- package/esm/util/colorSchemes.js +7 -0
- package/esm/util/{createStopTokenRotation.d.ts → createAbortRotation.d.ts} +11 -14
- package/esm/util/{createStopTokenRotation.js → createAbortRotation.js} +14 -26
- package/esm/util/cssColorParse.d.ts +15 -0
- package/esm/util/cssColorParse.js +53 -0
- package/esm/util/diagonalizeRegions.d.ts +2 -3
- package/esm/util/diagonalizeRegions.js +7 -12
- package/esm/util/expandLooseSearchIndex.d.ts +7 -0
- package/esm/util/expandLooseSearchIndex.js +25 -0
- package/esm/util/featureTransforms.d.ts +30 -3
- package/esm/util/featureTransforms.js +233 -36
- package/esm/util/fetchAndMaybeUnzip.js +5 -6
- package/esm/util/fetchContext.d.ts +5 -6
- package/esm/util/fetchContext.js +1 -1
- package/esm/util/fetchHub.d.ts +3 -1
- package/esm/util/fetchHub.js +2 -2
- package/esm/util/fetchSeq.d.ts +2 -3
- package/esm/util/fetchSeq.js +2 -2
- package/esm/util/fieldReader.d.ts +17 -0
- package/esm/util/fieldReader.js +62 -0
- package/esm/util/groupKeys.d.ts +75 -0
- package/esm/util/groupKeys.js +152 -0
- package/esm/util/highlights.d.ts +6 -4
- package/esm/util/highlights.js +12 -25
- package/esm/util/hooks.d.ts +1 -2
- package/esm/util/hooks.js +1 -2
- package/esm/util/index.d.ts +3 -3
- package/esm/util/index.js +4 -3
- package/esm/util/indexCandidates.js +1 -1
- package/esm/util/installFetch.d.ts +13 -10
- package/esm/util/installFetch.js +11 -10
- package/esm/util/installPrerequisiteFetch.d.ts +5 -3
- package/esm/util/installPrerequisiteFetch.js +3 -4
- package/esm/util/io/index.js +12 -12
- package/esm/util/isDataCurrent.d.ts +7 -5
- package/esm/util/isDataCurrent.js +9 -6
- package/esm/util/jexl.js +24 -21
- package/esm/util/jexlFilterRows.d.ts +89 -0
- package/esm/util/jexlFilterRows.js +252 -0
- package/esm/util/jexlFilters.d.ts +7 -5
- package/esm/util/jexlStrings.d.ts +3 -4
- package/esm/util/jexlStrings.js +2 -3
- package/esm/util/legendCandidates.d.ts +31 -27
- package/esm/util/legendCandidates.js +79 -53
- package/esm/util/localStorage.js +4 -4
- package/esm/util/markEncoding.d.ts +32 -16
- package/esm/util/markEncoding.js +177 -150
- package/esm/util/markEncodingTypes.d.ts +137 -66
- package/esm/util/mstUtils.d.ts +19 -22
- package/esm/util/mstUtils.js +19 -22
- package/esm/util/numericUtils.d.ts +7 -0
- package/esm/util/numericUtils.js +16 -0
- package/esm/util/numericValue.d.ts +14 -0
- package/esm/util/numericValue.js +34 -0
- package/esm/util/openFeatureWidget.js +1 -2
- package/esm/util/openViews.d.ts +1 -0
- package/esm/util/openViews.js +3 -3
- package/esm/util/parseLineByLine.d.ts +3 -4
- package/esm/util/parseLineByLine.js +7 -13
- package/esm/util/progress.d.ts +21 -21
- package/esm/util/progress.js +27 -26
- package/esm/util/renameRegions.d.ts +1 -2
- package/esm/util/renderToStaticMarkup.js +16 -16
- package/esm/util/rxjs.d.ts +7 -8
- package/esm/util/rxjs.js +12 -15
- package/esm/util/simpleFeature.d.ts +0 -1
- package/esm/util/svgColorProps.d.ts +11 -0
- package/esm/util/svgColorProps.js +28 -1
- package/esm/util/tabix.d.ts +3 -4
- package/esm/util/tabix.js +6 -7
- package/esm/util/thresholdScale.d.ts +54 -0
- package/esm/util/thresholdScale.js +112 -0
- package/esm/util/timeGate.d.ts +4 -5
- package/esm/util/timeGate.js +4 -5
- package/esm/util/trackConfigDelta.d.ts +22 -18
- package/esm/util/trackConfigDelta.js +40 -38
- package/esm/util/tracks.d.ts +27 -4
- package/esm/util/tracks.js +116 -43
- package/esm/util/translateTranscript.d.ts +44 -0
- package/esm/util/translateTranscript.js +102 -0
- package/esm/util/types/index.d.ts +19 -7
- package/esm/util/types/services.d.ts +1 -1
- package/esm/util/unknownSnapshotKeys.d.ts +15 -0
- package/esm/util/unknownSnapshotKeys.js +13 -0
- package/esm/util/useFeatureSequence.js +4 -4
- package/esm/util/useFetch.d.ts +3 -4
- package/esm/util/useFetch.js +5 -6
- package/esm/util/usePanelVirtualScroll.d.ts +7 -39
- package/esm/util/usePanelVirtualScroll.js +9 -40
- package/esm/util/useRowVirtualScroll.d.ts +6 -29
- package/esm/util/useRowVirtualScroll.js +8 -49
- package/esm/util/useVirtualScrollWheel.d.ts +20 -4
- package/esm/util/useVirtualScrollWheel.js +40 -84
- package/esm/util/viewHighlights.d.ts +3 -0
- package/esm/util/viewHighlights.js +5 -0
- package/esm/util/viewStatus.d.ts +24 -15
- package/esm/util/viewStatus.js +17 -0
- package/esm/util/withLaunchInput.d.ts +1 -1
- package/esm/util/withLaunchInput.js +0 -4
- package/package.json +26 -12
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
- package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
- package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
- package/esm/ReExports/BaseFeatureDetails.js +0 -10
- package/esm/ReExports/barrelOnlyNames.d.ts +0 -5
- package/esm/ReExports/barrelOnlyNames.js +0 -63
- package/esm/ReExports/index.d.ts +0 -1
- package/esm/ReExports/index.js +0 -1
- package/esm/ReExports/publicTracks.d.ts +0 -1
- package/esm/ReExports/publicTracks.js +0 -14
- package/esm/ReExports/publicUi.d.ts +0 -4
- package/esm/ReExports/publicUi.js +0 -33
- package/esm/ReExports/publicUtil.d.ts +0 -1
- package/esm/ReExports/publicUtil.js +0 -32
- package/esm/ReExports/sharedModules.d.ts +0 -96
- package/esm/ReExports/sharedModules.js +0 -66
- package/esm/ReExports/workerNamespaceNames.d.ts +0 -11
- package/esm/ReExports/workerNamespaceNames.js +0 -275
- package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +0 -51
- package/esm/pluggableElementTypes/models/HighlightsMixin.js +0 -78
- package/esm/ui/highlightChipReveal.d.ts +0 -32
- package/esm/ui/highlightChipReveal.js +0 -39
- package/esm/util/adapterConfigKey.d.ts +0 -12
- package/esm/util/adapterConfigKey.js +0 -14
- package/esm/util/stopToken.d.ts +0 -212
- package/esm/util/stopToken.js +0 -438
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// Generated by scripts/generateReExports.ts — do not edit by hand.
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// The @jbrowse/core half of the runtime ABI in the RPC worker: every key the main thread serves, a rendering module stubbed.
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// Regenerate with `pnpm autogen`.
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import { uiNamespace, uiStub } from './uiStub.js';
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import * as m0 from '../assemblyManager/index.js';
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import * as m1 from '../assemblyManager/assembly.js';
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import * as m2 from '../assemblyManager/assemblyConfigSchema.js';
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import * as m3 from '../BaseFeatureWidget/index.js';
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import * as m8 from '../BaseFeatureWidget/BaseFeatureDetail/Formatter.js';
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import * as m11 from '../checkPlugins.js';
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import * as m12 from '../configuration/index.js';
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import * as m13 from '../configuration/configurationSchema.js';
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import * as m14 from '../data_adapters/adapterSessionRefcount.js';
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import * as m15 from '../data_adapters/BaseAdapter/index.js';
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import * as m16 from '../data_adapters/BaseAdapter/getAdapterId.js';
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import * as m17 from '../data_adapters/BaseAdapter/stats.js';
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import * as m18 from '../data_adapters/BaseAdapter/types.js';
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import * as m19 from '../data_adapters/BaseAdapter/zoomRange.js';
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import * as m20 from '../data_adapters/dataAdapterCache.js';
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import * as m21 from '../data_adapters/getFeatureAdapter.js';
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import * as m22 from '../data_adapters/getSequenceSubAdapter.js';
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import * as m23 from '../pluggableElementTypes/index.js';
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import * as m24 from '../pluggableElementTypes/AdapterType.js';
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import * as m25 from '../pluggableElementTypes/ConnectionType.js';
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import * as m26 from '../pluggableElementTypes/DisplayType.js';
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import * as m27 from '../pluggableElementTypes/InternetAccountType.js';
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import * as m28 from '../pluggableElementTypes/models/index.js';
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import * as m29 from '../pluggableElementTypes/models/assertDisplayContract.js';
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import * as m30 from '../pluggableElementTypes/models/baseConnectionConfig.js';
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import * as m31 from '../pluggableElementTypes/models/BaseViewModel.js';
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import * as m32 from '../pluggableElementTypes/renderers/util/serializableFilterChain.js';
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import * as m33 from '../pluggableElementTypes/RpcMethodType.js';
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import * as m34 from '../pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js';
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import * as m35 from '../pluggableElementTypes/RpcMethodTypeWithRenameRegion.js';
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import * as m36 from '../pluggableElementTypes/RpcMethodTypeWithRenameRegions.js';
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import * as m37 from '../pluggableElementTypes/TextSearchAdapterType.js';
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import * as m38 from '../pluggableElementTypes/TrackType.js';
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import * as m39 from '../pluggableElementTypes/ViewType.js';
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import * as m40 from '../pluggableElementTypes/WidgetType.js';
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import * as m41 from '../Plugin.js';
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import * as m42 from '../pluginDefinitions.js';
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import * as m43 from '../PluginLoader.js';
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import * as m45 from '../rpc/byteBudget.js';
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import * as m46 from '../rpc/RpcManager.js';
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import * as m47 from '../rpc/RpcRegistry.js';
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import * as m48 from '../rpc/WebWorkerRpcDriver.js';
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import * as m49 from '../svg/constants.js';
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import * as m50 from '../svg/exportViewSvg.js';
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import * as m51 from '../svg/saveSvgAsImage.js';
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import * as m54 from '../svg/svgId.js';
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import * as m55 from '../svg/svgReady.js';
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import * as m57 from '../svg/trackNames.js';
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import * as m59 from '../TextSearch/BaseResults.js';
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import * as m60 from '../TextSearch/TextSearchManager.js';
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import * as m64 from '../ui/AppLogo.js';
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import * as m66 from '../ui/buildExtraTrackMenuItems.js';
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import * as m105 from '../ui/ResizeHandle.js';
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import * as m107 from '../ui/SanitizedHTML.js';
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import * as m108 from '../ui/scrollZoomLabels.js';
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import * as m111 from '../ui/showSubMenu.js';
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import * as m117 from '../ui/theme.js';
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import * as m118 from '../ui/useCoalescedPointer.js';
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import * as m119 from '../ui/useMouseTracking.js';
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import * as m120 from '../ui/VerticalScrollbar.js';
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import * as m121 from '../ui/zIndexes.js';
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import * as m122 from '../util/index.js';
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import * as m123 from '../util/aborting.js';
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import * as m124 from '../util/adapterMetadata.js';
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import * as m125 from '../util/addRelativeUris.js';
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import * as m129 from '../util/bandHeight.js';
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import * as m130 from '../util/bandLayout.js';
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import * as m131 from '../util/Base1DUtils.js';
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import * as m132 from '../util/Base1DViewModel.js';
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import * as m133 from '../util/bgzfWorkerPool.js';
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import * as m134 from '../util/blockTypes.js';
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import * as m135 from '../util/cacheBudgets.js';
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import * as m136 from '../util/calculateDynamicBlocks.js';
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import * as m138 from '../util/categoricalField.js';
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import * as m139 from '../util/chooseGridPitch.js';
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import * as m140 from '../util/color/index.js';
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import * as m142 from '../util/colord.js';
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import * as m144 from '../util/colorSchemes.js';
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import * as m151 from '../util/diagonalizeRegions.js';
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import * as m157 from '../util/fetchPhases.js';
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import * as m158 from '../util/fieldReader.js';
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import * as m159 from '../util/fileHandleStore.js';
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import * as m162 from '../util/formatFastaStrings.js';
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'@jbrowse/core/assemblyManager': { ...m0, __esModule: true },
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'@jbrowse/core/assemblyManager/assembly': { ...m1, __esModule: true },
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'@jbrowse/core/assemblyManager/assemblyConfigSchema': { ...m2, __esModule: true },
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'@jbrowse/core/BaseFeatureWidget': m3,
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': uiNamespace(['BaseAttributes', 'BaseCard', 'BaseCoreDetails', 'FeatureDetails', 'FeatureWash', 'default', 'filterByValueItems', 'jexlFilterDisplay'], true),
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes': uiStub,
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard': uiStub,
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails': uiStub,
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Formatter': m8.default,
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'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/SimpleField': uiStub,
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'@jbrowse/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog': uiStub,
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'@jbrowse/core/configuration/configurationSchema': m13,
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'@jbrowse/core/data_adapters/adapterSessionRefcount': m14,
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'@jbrowse/core/data_adapters/BaseAdapter': m15,
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'@jbrowse/core/data_adapters/BaseAdapter/getAdapterId': m16,
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'@jbrowse/core/data_adapters/BaseAdapter/stats': m17,
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'@jbrowse/core/data_adapters/BaseAdapter/types': m18,
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'@jbrowse/core/data_adapters/BaseAdapter/zoomRange': m19,
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'@jbrowse/core/data_adapters/getFeatureAdapter': m21,
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'@jbrowse/core/data_adapters/getSequenceSubAdapter': m22,
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'@jbrowse/core/pluggableElementTypes/DisplayType': m26.default,
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'@jbrowse/core/pluggableElementTypes/InternetAccountType': m27.default,
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'@jbrowse/core/pluggableElementTypes/models/assertDisplayContract': m29,
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'@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig': m30.default,
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'@jbrowse/core/pluggableElementTypes/models/BaseViewModel': { ...m31, __esModule: true },
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242
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+
'@jbrowse/core/pluggableElementTypes/RpcMethodType': { ...m33, __esModule: true },
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+
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244
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+
'@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegion': m35.default,
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+
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+
'@jbrowse/core/pluggableElementTypes/TextSearchAdapterType': m37.default,
|
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247
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+
'@jbrowse/core/pluggableElementTypes/TrackType': m38.default,
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+
'@jbrowse/core/pluggableElementTypes/ViewType': m39.default,
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249
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+
'@jbrowse/core/pluggableElementTypes/WidgetType': m40.default,
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250
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+
'@jbrowse/core/Plugin': m41.default,
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251
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+
'@jbrowse/core/pluginDefinitions': m42,
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252
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+
'@jbrowse/core/PluginLoader': { ...m43, __esModule: true },
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253
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+
'@jbrowse/core/PluginManager': { ...m44, __esModule: true },
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+
'@jbrowse/core/rpc/byteBudget': m45,
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+
'@jbrowse/core/rpc/RpcManager': m46.default,
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+
'@jbrowse/core/rpc/RpcRegistry': m47,
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257
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+
'@jbrowse/core/rpc/WebWorkerRpcDriver': m48.default,
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258
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+
'@jbrowse/core/svg/constants': m49,
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259
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+
'@jbrowse/core/svg/exportViewSvg': m50,
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260
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+
'@jbrowse/core/svg/saveSvgAsImage': m51,
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261
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+
'@jbrowse/core/svg/serializeSvg': uiNamespace(['normalizeSvgMarkup', 'serializeSvg']),
|
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262
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+
'@jbrowse/core/svg/SvgExport': uiNamespace(['SVGBackground', 'SVGExportRoot', 'SVGMessageBox', 'SvgChrome', 'SvgClipRect']),
|
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263
|
+
'@jbrowse/core/svg/svgId': m54,
|
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264
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+
'@jbrowse/core/svg/svgReady': m55,
|
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265
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+
'@jbrowse/core/svg/SvgThemeProviders': uiNamespace(['SvgThemeProviders']),
|
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266
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+
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|
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267
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+
'@jbrowse/core/svg/wrapSvgExport': uiNamespace(['wrapSvgExport']),
|
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268
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+
'@jbrowse/core/TextSearch/BaseResults': { ...m59, __esModule: true },
|
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269
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+
'@jbrowse/core/TextSearch/TextSearchManager': m60.default,
|
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270
|
+
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|
|
271
|
+
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|
|
272
|
+
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|
|
273
|
+
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|
|
274
|
+
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|
|
275
|
+
'@jbrowse/core/ui/buildExtraTrackMenuItems': m66,
|
|
276
|
+
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|
|
277
|
+
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|
|
278
|
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|
|
279
|
+
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|
|
280
|
+
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|
|
281
|
+
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|
|
282
|
+
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|
|
283
|
+
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|
|
284
|
+
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|
|
285
|
+
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|
|
286
|
+
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|
|
287
|
+
'@jbrowse/core/ui/ErrorBoundary': m78,
|
|
288
|
+
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|
|
289
|
+
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|
|
290
|
+
'@jbrowse/core/ui/filterMenuItems': m81,
|
|
291
|
+
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|
|
292
|
+
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|
|
293
|
+
'@jbrowse/core/ui/hoverBoxStyle': m84,
|
|
294
|
+
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|
|
295
|
+
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|
|
296
|
+
'@jbrowse/core/ui/InfoDialog': uiStub,
|
|
297
|
+
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|
|
298
|
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|
|
299
|
+
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|
|
300
|
+
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|
|
301
|
+
'@jbrowse/core/ui/LoadingOverlay': uiNamespace(['default', 'useDelayedFlag'], true),
|
|
302
|
+
'@jbrowse/core/ui/Logo': m93,
|
|
303
|
+
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|
|
304
|
+
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|
|
305
|
+
'@jbrowse/core/ui/menuItems': m96,
|
|
306
|
+
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|
|
307
|
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|
|
308
|
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|
|
309
|
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|
|
310
|
+
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|
|
311
|
+
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|
|
312
|
+
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|
|
313
|
+
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|
|
314
|
+
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|
|
315
|
+
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|
|
316
|
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|
|
317
|
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|
|
318
|
+
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|
|
319
|
+
'@jbrowse/core/ui/ShareLinkField': uiStub,
|
|
320
|
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'@jbrowse/core/ui/showSubMenu': m111,
|
|
321
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|
|
322
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|
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323
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|
|
324
|
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|
|
325
|
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|
|
326
|
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|
|
327
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|
|
328
|
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|
|
329
|
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|
|
330
|
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|
|
331
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|
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332
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|
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333
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|
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334
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|
|
335
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|
|
336
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|
|
337
|
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|
|
338
|
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|
|
339
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|
|
340
|
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|
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341
|
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|
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342
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|
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343
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|
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344
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|
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345
|
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|
|
346
|
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|
|
347
|
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|
|
348
|
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|
|
349
|
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|
|
350
|
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|
|
351
|
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|
|
352
|
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|
|
353
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|
|
354
|
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|
|
355
|
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|
|
356
|
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|
|
357
|
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|
|
358
|
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|
|
359
|
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|
|
360
|
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|
|
361
|
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|
|
362
|
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|
|
363
|
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|
|
364
|
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|
|
365
|
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|
|
366
|
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|
|
367
|
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|
|
368
|
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|
|
369
|
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|
|
370
|
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|
|
371
|
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|
|
372
|
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|
|
373
|
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|
|
374
|
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'@jbrowse/core/util/geneticCodes': m165,
|
|
375
|
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|
|
376
|
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|
|
377
|
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|
|
378
|
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|
|
379
|
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'@jbrowse/core/util/hooks': m170,
|
|
380
|
+
'@jbrowse/core/util/htmlText': m171,
|
|
381
|
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|
|
382
|
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|
|
383
|
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|
|
384
|
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|
|
385
|
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|
|
386
|
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'@jbrowse/core/util/io': m177,
|
|
387
|
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|
|
388
|
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|
|
389
|
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|
|
390
|
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|
|
391
|
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'@jbrowse/core/util/jexlStrings': m182,
|
|
392
|
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'@jbrowse/core/util/layouts': m183,
|
|
393
|
+
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|
|
394
|
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'@jbrowse/core/util/layouts/placeRect': m185,
|
|
395
|
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|
|
396
|
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|
|
397
|
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|
|
398
|
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|
|
399
|
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|
|
400
|
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|
|
401
|
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|
|
402
|
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|
|
403
|
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|
|
404
|
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|
|
405
|
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|
|
406
|
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|
|
407
|
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|
|
408
|
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|
|
409
|
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|
|
410
|
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|
|
411
|
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|
|
412
|
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|
|
413
|
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|
|
414
|
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|
|
415
|
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|
|
416
|
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|
|
417
|
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|
|
418
|
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|
|
419
|
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|
|
420
|
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|
|
421
|
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|
|
422
|
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|
|
423
|
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|
|
424
|
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|
|
425
|
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|
|
426
|
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|
|
427
|
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|
|
428
|
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|
|
429
|
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|
|
430
|
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|
|
431
|
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|
|
432
|
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|
|
433
|
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|
|
434
|
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|
|
435
|
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|
|
436
|
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|
|
437
|
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|
|
438
|
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|
|
439
|
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|
|
440
|
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|
|
441
|
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|
|
442
|
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|
|
443
|
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|
|
444
|
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|
|
445
|
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|
|
446
|
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|
|
447
|
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|
|
448
|
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|
|
449
|
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|
|
450
|
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|
|
451
|
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|
|
452
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};
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453
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export default libs;
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@@ -0,0 +1,67 @@
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1
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+
// The framework half of the runtime plugin ABI: the singletons a plugin must
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2
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+
// share with the host (React, MobX, MST) and Material UI. The @jbrowse half is
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3
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+
// generated from the exports maps — scripts/generateReExports.ts — and
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4
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+
// modules.ts joins the two. The worker's copy of this half is generated from
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5
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+
// it (frameworkWorkerModules.generated.ts), so a key added here is served in
|
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6
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+
// both realms by the next `pnpm autogen`.
|
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7
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+
import { alpha, createTheme, useTheme } from '@mui/material';
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8
|
+
import SvgIcon, { createSvgIcon } from '@mui/material/SvgIcon';
|
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9
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+
import * as MUIUtils from '@mui/material/utils';
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10
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+
import * as mxreact from 'mobx-react';
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11
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+
import * as ReactDom from 'react-dom';
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12
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+
import * as ReactDomClient from 'react-dom/client';
|
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13
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+
import { cx, keyframes, makeStyles } from '../util/tss-react/index.js';
|
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14
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+
import { DataGridEntries } from './MuiDataGridReExports.js';
|
|
15
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+
import { Entries } from './MuiReExports.js';
|
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16
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+
import { MUIStyles } from './MuiStylesReExports.js';
|
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17
|
+
import frameworkShared from './frameworkShared.js';
|
|
18
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+
import { lazyMap } from './lazify.js';
|
|
19
|
+
function makeLegacyMakeStyles() {
|
|
20
|
+
return (args) => {
|
|
21
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+
const useStyles = makeStyles()(args);
|
|
22
|
+
return () => useStyles().classes;
|
|
23
|
+
};
|
|
24
|
+
}
|
|
25
|
+
const tssReact = { cx, keyframes, makeStyles };
|
|
26
|
+
const legacyMakeStyles = makeLegacyMakeStyles();
|
|
27
|
+
const muiMaterialLib = {
|
|
28
|
+
...lazyMap(Entries),
|
|
29
|
+
alpha,
|
|
30
|
+
useTheme,
|
|
31
|
+
createTheme,
|
|
32
|
+
};
|
|
33
|
+
const muiStylesLib = { ...MUIStyles, makeStyles: legacyMakeStyles };
|
|
34
|
+
const libs = {
|
|
35
|
+
...frameworkShared,
|
|
36
|
+
'mobx-react': mxreact,
|
|
37
|
+
'react-dom': ReactDom,
|
|
38
|
+
'react-dom/client': ReactDomClient,
|
|
39
|
+
// Only lazy component entries are re-exported. The grid *hooks*
|
|
40
|
+
// (useGridApiContext/useGridApiRef/useGridRootProps) are intentionally left
|
|
41
|
+
// out: statically importing them here pulled the entire ~1.2 MB
|
|
42
|
+
// @mui/x-data-grid package into the eager first-paint graph, defeating the
|
|
43
|
+
// lazy import('@mui/x-data-grid') in MuiDataGridReExports. First-party code
|
|
44
|
+
// that needs the hooks imports them directly from '@mui/x-data-grid'.
|
|
45
|
+
'@mui/x-data-grid': {
|
|
46
|
+
...lazyMap(DataGridEntries),
|
|
47
|
+
},
|
|
48
|
+
'@mui/material/utils': MUIUtils,
|
|
49
|
+
'tss-react': tssReact,
|
|
50
|
+
'tss-react/mui': tssReact,
|
|
51
|
+
'@mui/material': muiMaterialLib,
|
|
52
|
+
...lazyMap(Entries, '@mui/material/'),
|
|
53
|
+
// @mui/icons-material — bundled into external plugins — reads the
|
|
54
|
+
// `createSvgIcon` *named* export from @mui/material/SvgIcon, but lazyMap
|
|
55
|
+
// exposes only the component (its default). SvgIcon is a primitive that's
|
|
56
|
+
// eagerly loaded in practice, so expose it directly with createSvgIcon
|
|
57
|
+
// attached: a default import still lands on a usable component (rollup-plugin-
|
|
58
|
+
// external-globals substitutes the value itself, esbuild's globalExternals
|
|
59
|
+
// reads `.default`), while the named import and icons-material's CJS
|
|
60
|
+
// `require(...).createSvgIcon` both find the util. A shallow copy carries the
|
|
61
|
+
// forwardRef's $$typeof/render so the shared SvgIcon export isn't mutated.
|
|
62
|
+
// Overrides the lazy entry above; verified against both bundlers.
|
|
63
|
+
// GMOD/jbrowse-components#5606.
|
|
64
|
+
'@mui/material/SvgIcon': Object.assign({}, SvgIcon, { createSvgIcon }),
|
|
65
|
+
'@mui/material/styles': muiStylesLib,
|
|
66
|
+
};
|
|
67
|
+
export default libs;
|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
import * as React from 'react';
|
|
2
|
+
import * as mst from '@jbrowse/mobx-state-tree';
|
|
3
|
+
import * as mobx from 'mobx';
|
|
4
|
+
import * as ReactJSXRuntime from 'react/jsx-runtime';
|
|
5
|
+
declare const frameworkShared: {
|
|
6
|
+
react: typeof React;
|
|
7
|
+
'react/jsx-runtime': typeof ReactJSXRuntime;
|
|
8
|
+
mobx: typeof mobx;
|
|
9
|
+
'@jbrowse/mobx-state-tree': typeof mst;
|
|
10
|
+
'mobx-state-tree': typeof mst;
|
|
11
|
+
};
|
|
12
|
+
export default frameworkShared;
|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
// The framework singletons both realms serve for real — one object, imported
|
|
2
|
+
// by the main-thread map and the generated worker map, so a plugin's React and
|
|
3
|
+
// MST are the host's in the worker too and the two maps hold the same values.
|
|
4
|
+
// eslint-disable-next-line no-restricted-imports
|
|
5
|
+
import * as React from 'react';
|
|
6
|
+
import * as mst from '@jbrowse/mobx-state-tree';
|
|
7
|
+
import * as mobx from 'mobx';
|
|
8
|
+
import * as ReactJSXRuntime from 'react/jsx-runtime';
|
|
9
|
+
const frameworkShared = {
|
|
10
|
+
react: React,
|
|
11
|
+
'react/jsx-runtime': ReactJSXRuntime,
|
|
12
|
+
mobx,
|
|
13
|
+
'@jbrowse/mobx-state-tree': mst,
|
|
14
|
+
'mobx-state-tree': mst,
|
|
15
|
+
};
|
|
16
|
+
export default frameworkShared;
|