@jbrowse/core 5.0.0-beta.8 → 5.0.0-beta.9

package/esm/util/useVirtualScrollWheel.js

@@ -1,105 +1,61 @@
-import { useCallback, useEffect, useMemo, useRef } from 'react';
+import { useEffect, useMemo, useRef } from 'react';
 import { createFrameCoalescer } from './frameCoalescer.js';
 import { trackPointerPresence } from './pointerPresence.js';
 import { createScrollLatch } from './scrollLatch.js';
 import { useEventCallback } from './useEventCallback.js';
 import { normalizeWheelDelta } from './wheelZoom.js';
-// Whether the wheel landed inside something within the panel that runs its own
-// gestures — JBrowse's `[data-gesture-owner]` marker, the same one the LGV's
-// click-drag pan and MAF's drag-selection test for. A panel spans its overlays
-// now, and a few of those are controls rather than content: the display's own
-// `VerticalScrollbar` (which scrolls the panel itself, from its own listener),
-// the pileup's band resize handles, a floating legend. Those keep the gesture
-// they already had instead of being absorbed the moment the panel grew to cover
-// them.
-//
-// The marker element ITSELF is a panel at the one call site that is one — the
-// scrollbar binds this hook to its own marked track — so an owner that IS the
-// panel does not count. Nor does one ABOVE it: `TrackContainer` stamps the
-// marker once for its whole overlay layer, and `closest` walking out of the
-// panel into that would otherwise disown every wheel a display gets.
+// An owner that IS the panel (the scrollbar binds this hook to its own marked
+// track) or sits ABOVE it (`TrackContainer` marks its whole overlay layer) does
+// not count.
 function claimedInside(panel, target) {
     const owner = target instanceof Element ? target.closest('[data-gesture-owner]') : null;
     return owner !== null && owner !== panel && panel.contains(owner);
 }
-// Non-passive wheel wiring for a canvas-backed virtual scroll (no DOM overflow
-// container to self-correct). Owns the latch, the per-frame coalescing, and the
-// listener lifecycle, and hands the caller an `applyScroll` that runs the latch
-// + schedules the commit. The gesture guards (scrollZoom, ctrl/meta,
-// shift-to-resize) differ per display and so stay in the caller; this
-// centralizes the mechanical latch + listener + rAF boilerplate shared by the
-// alignments pileup, the variant matrix, and the canvas display.
-//
-// **Bind this to the panel, not to the `<canvas>`.** A canvas cannot hold DOM
-// children, so every overlay a display draws over it — floating feature labels,
-// group chips, sashimi arcs — is a positioned SIBLING, and the ones that answer
-// the pointer (`pointerEvents: 'auto'`, because they are clickable) are what a
-// wheel event over them targets. That event bubbles past the canvas entirely, so
-// a listener bound to the canvas never sees it and the gesture falls through to
-// the page mid-scroll. Bound to the element containing both, the wheel is the
-// panel's wherever inside it the cursor happens to be. `trackPointerPresence`
-// below keys off the same element, and `mouseenter`/`mouseleave` ignore
-// descendant transitions — so crossing onto an overlay no longer reads as
-// leaving the panel either.
-//
-// What keeps a panel safe to widen is `claimedInside` above: it covers its
-// overlays, and yields the ones that run gestures of their own.
-export function useVirtualScrollWheel(panel, 
-// `el` is the element the listener is bound to, handed back non-null: a
-// gesture measuring against its own box (the row-resize pin) would otherwise
-// re-assert the nullable it was passed, at the one call site that cannot be
-// reached with a null.
-onWheel) {
+/**
+ * Non-passive wheel wiring for a canvas-backed virtual scroll. Owns the scroll
+ * latch (and so `preventDefault`), per-frame coalescing of `setScrollTop`, and
+ * the listener lifecycle. `onWheel` decides what the gesture means and calls
+ * `scroll` when it means scrolling `model`.
+ *
+ * **Bind this to the panel, not to the `<canvas>`.** A canvas holds no DOM
+ * children, so the clickable overlays drawn over it are siblings, and a wheel
+ * over one never reaches a listener on the canvas. Overlays that run their own
+ * gestures opt out with `[data-gesture-owner]`.
+ */
+export function useVirtualScrollWheel(panel, model, onWheel) {
     const latch = useMemo(() => createScrollLatch(), []);
     const frame = useMemo(() => createFrameCoalescer(), []);
-    // The latched scroll position as it advances across one frame's events. The
-    // latch reads this, not the model, so its boundary/preventDefault decision
-    // sees monotonically advancing offsets and no delta is lost to a
-    // not-yet-committed model read.
+    // The offset as it advances across one frame's events, so the latch sees
+    // every delta before the model has committed any of them.
     const runningRef = useRef(0);
-    const applyScroll = useCallback((e, { scrollTop, viewportHeight, scrollableHeight }, commit) => {
-        // Each handler takes the gesture whose dominant axis is its own: a
-        // sideways swipe belongs to the view's pan, and consuming its small
-        // vertical component would both drift the panel and — since consuming
-        // means preventDefault, which is how the view knows to stay out — kill
-        // the pan the user actually asked for. A tie is vertical, matching the
-        // view's own zoom-vs-pan tie-break. Raw deltas, because both axes of one
-        // event share a deltaMode. `holds` is what keeps this from cutting a
-        // gesture in half: once the panel has latched, the sideways momentum
-        // trailing a vertical scroll stays with the panel.
-        const sideways = Math.abs(e.deltaX) > Math.abs(e.deltaY);
-        if (scrollableHeight <= 0 || (sideways && !latch.holds(e))) {
-            return;
-        }
-        // A fresh frame (nothing pending) re-syncs to the model's live scrollTop;
-        // within a frame `running` keeps advancing from the last latched offset.
-        if (!frame.pending) {
-            runningRef.current = scrollTop;
-        }
-        const dy = normalizeWheelDelta(e.deltaY, e.deltaMode, viewportHeight);
-        const next = latch.scroll(e, runningRef.current, dy, scrollableHeight);
-        if (next !== null) {
-            runningRef.current = next;
-            // The first move of a frame schedules the commit; later moves only
-            // advance `running`, so the frame ends with a single setScrollTop (one
-            // repaint) carrying the accumulated offset.
-            frame.schedule(() => {
-                commit(runningRef.current);
-            });
-        }
-    }, [latch, frame]);
     const handleWheel = useEventCallback((e, el) => {
-        onWheel(e, applyScroll, el);
+        onWheel(e, () => {
+            // A sideways-dominant gesture is the view's pan unless this panel has
+            // already latched it; ties go vertical, as in the view.
+            const sideways = Math.abs(e.deltaX) > Math.abs(e.deltaY);
+            const { scrollableHeight, scrollViewportHeight } = model;
+            if (scrollableHeight <= 0 || (sideways && !latch.holds(e))) {
+                return;
+            }
+            if (!frame.pending) {
+                runningRef.current = model.scrollTop;
+            }
+            const dy = normalizeWheelDelta(e.deltaY, e.deltaMode, scrollViewportHeight);
+            const next = latch.scroll(e, runningRef.current, dy, scrollableHeight);
+            if (next !== null) {
+                runningRef.current = next;
+                frame.schedule(() => {
+                    model.setScrollTop(runningRef.current);
+                });
+            }
+        }, el);
     });
     useEffect(() => {
         if (!panel) {
             return undefined;
         }
-        // Ignore wheel events the browser keeps latching to this panel once the
-        // pointer has left (see trackPointerPresence): let them chain to the page
-        // and reset the latch so the next in-panel gesture starts clean. Without
-        // this the panel stays stuck to per-track scroll after the mouse has left —
-        // worst in embedded, where the outer page is the thing that should scroll.
+        // The browser keeps targeting a gesture at the element it began on after
+        // the pointer leaves; release those to the page.
         const presence = trackPointerPresence(panel, () => {
             latch.reset();
         });

package/esm/util/viewHighlights.d.ts

@@ -0,0 +1,3 @@
+import type { HighlightType } from './highlights.ts';
+import type { AssemblyNameResolver } from './tracks.ts';
+export declare function highlightsOnAssemblies(highlights: readonly HighlightType[], assemblyNames: Iterable<string>, assemblyManager: AssemblyNameResolver): HighlightType[];

package/esm/util/viewHighlights.js

@@ -0,0 +1,5 @@
+import { isSameAssemblyName } from './tracks.js';
+export function highlightsOnAssemblies(highlights, assemblyNames, assemblyManager) {
+    const names = [...assemblyNames];
+    return highlights.filter(h => names.some(a => isSameAssemblyName(a, h.assemblyName, assemblyManager)));
+}

package/esm/util/viewStatus.d.ts

@@ -1,13 +1,27 @@
+/**
+ * What a view's loading screen says: the label, the determinate fraction when
+ * the load reports one, and the URL being fetched when the phase named one.
+ */
+export interface ViewLoading {
+    message: string;
+    progress: number | undefined;
+    source?: string;
+}
+interface LoadingAssembly {
+    statusMessage?: string;
+    statusProgress?: number;
+    statusSource?: string;
+}
+/**
+ * A view's `loading` getter: undefined unless `showLoading`, and otherwise read
+ * off the assembly whose load is the wait. The assembly is a thunk because its
+ * status ticks while a file is in flight, and a view that is not loading should
+ * not subscribe to it.
+ */
+export declare function viewLoading(showLoading: boolean, assembly: () => LoadingAssembly | undefined): ViewLoading | undefined;
 /**
  * The mutually-exclusive lifecycle state of a view, as one value.
  *
- * A view answers this question through nine getters today — `ready`, `error`,
- * `initialized`, `showLoading`, `showImportForm`, `hasSomethingToShow`,
- * `loadingMessage`, `loadingProgress`, `assemblyErrors` — and a host reading
- * them has to re-derive the precedence by subtraction, which is the mistake
- * `computeDisplayPhase` was written to stop one level down. `view.ready` **is**
- * that subtraction: `!showLoading && !this.error`.
- *
  * The payload travels with the branch, so a caller cannot read a loading
  * message out of a failed view or an error out of a healthy one.
  */
@@ -16,11 +30,9 @@ export type ViewStatus = {
 } | {
     type: 'error';
     error: unknown;
-} | {
+} | ({
     type: 'loading';
-    message: string;
-    progress: number | undefined;
-} | {
+} & ViewLoading) | {
     type: 'noRegions';
 };
 export interface ViewStatusInputs {
@@ -40,10 +52,7 @@ export interface ViewStatusInputs {
      * would make every reader of a *ready* view subscribe to a churning
      * observable it never displays.
      */
-    loading: () => {
-        message: string;
-        progress: number | undefined;
-    } | undefined;
+    loading: () => ViewLoading | undefined;
 }
 /**
  * Precedence is `error` > `noRegions` > `loading` > `ready`, in one place,

package/esm/util/viewStatus.js

@@ -1,3 +1,20 @@
+/**
+ * A view's `loading` getter: undefined unless `showLoading`, and otherwise read
+ * off the assembly whose load is the wait. The assembly is a thunk because its
+ * status ticks while a file is in flight, and a view that is not loading should
+ * not subscribe to it.
+ */
+export function viewLoading(showLoading, assembly) {
+    if (!showLoading) {
+        return undefined;
+    }
+    const asm = assembly();
+    return {
+        message: asm?.statusMessage || 'Loading',
+        progress: asm?.statusProgress,
+        source: asm?.statusSource,
+    };
+}
 /**
  * Precedence is `error` > `noRegions` > `loading` > `ready`, in one place,
  * rather than re-encoded by subtraction in each view and again in each host.

package/esm/util/withLaunchInput.d.ts

@@ -39,7 +39,7 @@ export interface LaunchInputOptions<M extends IAnyModelType> {
  * property, and a copy rides in the blob so the launcher can run the ordered
  * imperative step the property write alone does not produce.
  */
-export type LaunchKeyKind = 'launch' | 'trackEntries' | 'rows' | 'highlightEntries' | 'replay';
+export type LaunchKeyKind = 'launch' | 'trackEntries' | 'rows' | 'replay';
 export interface LaunchKeySpec {
     kind: LaunchKeyKind;
 }

package/esm/util/withLaunchInput.js

@@ -67,10 +67,6 @@ function isRecipeEntry(kind, entry) {
             // declare it. `type` does not discriminate: a spec writes display types
             // inline
             return (typeof entry === 'string' || (isObject(entry) && 'trackId' in entry));
-        case 'highlightEntries':
-            // a string needs coerceHighlight and the assembly manager, neither of
-            // which a pure preprocessor can reach; an object is the persisted shape
-            return typeof entry === 'string';
         case 'rows':
             // a built row is a view snapshot, and every view's `type` is a required
             // literal

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/core",
-  "version": "5.0.0-beta.8",
+  "version": "5.0.0-beta.9",
   "type": "module",
   "description": "JBrowse 2 core libraries used by plugins",
   "keywords": [
@@ -34,6 +34,8 @@
     "./ReExports/list": "./esm/ReExports/list.js",
     "./ReExports/modules": "./esm/ReExports/modules.js",
     "./ReExports/registry": "./esm/ReExports/registry.js",
+    "./ReExports/uiStub": "./esm/ReExports/uiStub.js",
+    "./ReExports/workerModules": "./esm/ReExports/workerModules.js",
     "./TextSearch/BaseResults": "./esm/TextSearch/BaseResults.js",
     "./TextSearch/TextSearchManager": "./esm/TextSearch/TextSearchManager.js",
     "./assemblyManager": "./esm/assemblyManager/index.js",
@@ -46,6 +48,7 @@
     "./data_adapters/BaseAdapter/getAdapterId": "./esm/data_adapters/BaseAdapter/getAdapterId.js",
     "./data_adapters/BaseAdapter/stats": "./esm/data_adapters/BaseAdapter/stats.js",
     "./data_adapters/BaseAdapter/types": "./esm/data_adapters/BaseAdapter/types.js",
+    "./data_adapters/BaseAdapter/zoomRange": "./esm/data_adapters/BaseAdapter/zoomRange.js",
     "./data_adapters/adapterSessionRefcount": "./esm/data_adapters/adapterSessionRefcount.js",
     "./data_adapters/dataAdapterCache": "./esm/data_adapters/dataAdapterCache.js",
     "./data_adapters/getFeatureAdapter": "./esm/data_adapters/getFeatureAdapter.js",
@@ -65,7 +68,6 @@
     "./pluggableElementTypes/WidgetType": "./esm/pluggableElementTypes/WidgetType.js",
     "./pluggableElementTypes/models": "./esm/pluggableElementTypes/models/index.js",
     "./pluggableElementTypes/models/BaseViewModel": "./esm/pluggableElementTypes/models/BaseViewModel.js",
-    "./pluggableElementTypes/models/HighlightsMixin": "./esm/pluggableElementTypes/models/HighlightsMixin.js",
     "./pluggableElementTypes/models/assertDisplayContract": "./esm/pluggableElementTypes/models/assertDisplayContract.js",
     "./pluggableElementTypes/models/baseConnectionConfig": "./esm/pluggableElementTypes/models/baseConnectionConfig.js",
     "./pluggableElementTypes/renderers/util/serializableFilterChain": "./esm/pluggableElementTypes/renderers/util/serializableFilterChain.js",
@@ -75,8 +77,11 @@
     "./rpc/WebWorkerRpcDriver": "./esm/rpc/WebWorkerRpcDriver.js",
     "./rpc/byteBudget": "./esm/rpc/byteBudget.js",
     "./svg/SvgExport": "./esm/svg/SvgExport.js",
+    "./svg/SvgThemeProviders": "./esm/svg/SvgThemeProviders.js",
     "./svg/constants": "./esm/svg/constants.js",
+    "./svg/exportViewSvg": "./esm/svg/exportViewSvg.js",
     "./svg/saveSvgAsImage": "./esm/svg/saveSvgAsImage.js",
+    "./svg/serializeSvg": "./esm/svg/serializeSvg.js",
     "./svg/svgId": "./esm/svg/svgId.js",
     "./svg/svgReady": "./esm/svg/svgReady.js",
     "./svg/trackNames": "./esm/svg/trackNames.js",
@@ -128,7 +133,6 @@
     "./ui/colors": "./esm/ui/colors.js",
     "./ui/filterMenuItems": "./esm/ui/filterMenuItems.js",
     "./ui/gpuFallback": "./esm/ui/gpuFallback.js",
-    "./ui/highlightChipReveal": "./esm/ui/highlightChipReveal.js",
     "./ui/hoverBoxStyle": "./esm/ui/hoverBoxStyle.js",
     "./ui/legendSpec": "./esm/ui/legendSpec.js",
     "./ui/measureLegendText": "./esm/ui/measureLegendText.js",
@@ -150,10 +154,10 @@
     "./util/SvgCanvas": "./esm/util/SvgCanvas.js",
     "./util/TimeTraveller": "./esm/util/TimeTraveller.js",
     "./util/aborting": "./esm/util/aborting.js",
-    "./util/adapterConfigKey": "./esm/util/adapterConfigKey.js",
     "./util/adapterMetadata": "./esm/util/adapterMetadata.js",
     "./util/addRelativeUris": "./esm/util/addRelativeUris.js",
     "./util/analytics": "./esm/util/analytics.js",
+    "./util/animationAllowed": "./esm/util/animationAllowed.js",
     "./util/assemblyConfigUtils": "./esm/util/assemblyConfigUtils.js",
     "./util/bandHeight": "./esm/util/bandHeight.js",
     "./util/bandLayout": "./esm/util/bandLayout.js",
@@ -162,23 +166,27 @@
     "./util/cacheBudgets": "./esm/util/cacheBudgets.js",
     "./util/calculateDynamicBlocks": "./esm/util/calculateDynamicBlocks.js",
     "./util/calculateStaticBlocks": "./esm/util/calculateStaticBlocks.js",
+    "./util/categoricalField": "./esm/util/categoricalField.js",
     "./util/chooseGridPitch": "./esm/util/chooseGridPitch.js",
     "./util/color": "./esm/util/color/index.js",
     "./util/colorBits": "./esm/util/colorBits.js",
     "./util/colorRamp": "./esm/util/colorRamp.js",
+    "./util/colorSchemes": "./esm/util/colorSchemes.js",
     "./util/colord": "./esm/util/colord.js",
     "./util/convertCodingSequenceToPeptides": "./esm/util/convertCodingSequenceToPeptides.js",
     "./util/copyText": "./esm/util/copyText.js",
-    "./util/createStopTokenRotation": "./esm/util/createStopTokenRotation.js",
+    "./util/createAbortRotation": "./esm/util/createAbortRotation.js",
     "./util/createSvgRasterCanvas": "./esm/util/createSvgRasterCanvas.js",
     "./util/deepEqual": "./esm/util/deepEqual.js",
     "./util/deepMerge": "./esm/util/deepMerge.js",
     "./util/diagonalizeRegions": "./esm/util/diagonalizeRegions.js",
     "./util/eventPoint": "./esm/util/eventPoint.js",
+    "./util/expandLooseSearchIndex": "./esm/util/expandLooseSearchIndex.js",
     "./util/featureTransforms": "./esm/util/featureTransforms.js",
     "./util/fetchContext": "./esm/util/fetchContext.js",
     "./util/fetchHub": "./esm/util/fetchHub.js",
     "./util/fetchPhases": "./esm/util/fetchPhases.js",
+    "./util/fieldReader": "./esm/util/fieldReader.js",
     "./util/fileHandleStore": "./esm/util/fileHandleStore.js",
     "./util/flatbush": "./esm/util/flatbush/index.js",
     "./util/formatFastaStrings": "./esm/util/formatFastaStrings.js",
@@ -186,6 +194,8 @@
     "./util/freezeDeep": "./esm/util/freezeDeep.js",
     "./util/geneticCodes": "./esm/util/geneticCodes.js",
     "./util/getRelativeX": "./esm/util/getRelativeX.js",
+    "./util/glyphNames": "./esm/util/glyphNames.js",
+    "./util/groupKeys": "./esm/util/groupKeys.js",
     "./util/highlights": "./esm/util/highlights.js",
     "./util/hooks": "./esm/util/hooks.js",
     "./util/htmlText": "./esm/util/htmlText.js",
@@ -210,6 +220,7 @@
     "./util/localStorage": "./esm/util/localStorage.js",
     "./util/makeAssembly": "./esm/util/makeAssembly.js",
     "./util/markEncoding": "./esm/util/markEncoding.js",
+    "./util/measureText": "./esm/util/measureText.js",
     "./util/mst-reflection": "./esm/util/mst-reflection.js",
     "./util/mstUtils": "./esm/util/mstUtils.js",
     "./util/nanoid": "./esm/util/nanoid.js",
@@ -229,16 +240,18 @@
     "./util/simpleFeature": "./esm/util/simpleFeature.js",
     "./util/starFusion": "./esm/util/starFusion.js",
     "./util/stats": "./esm/util/stats.js",
-    "./util/stopToken": "./esm/util/stopToken.js",
     "./util/svgColorProps": "./esm/util/svgColorProps.js",
     "./util/tabix": "./esm/util/tabix.js",
+    "./util/thresholdScale": "./esm/util/thresholdScale.js",
     "./util/tickLabels": "./esm/util/tickLabels.js",
     "./util/tracks": "./esm/util/tracks.js",
+    "./util/translateTranscript": "./esm/util/translateTranscript.js",
     "./util/tss-react": "./esm/util/tss-react/index.js",
     "./util/tss-react/types": "./esm/util/tss-react/types.js",
     "./util/types": "./esm/util/types/index.js",
     "./util/types/data": "./esm/util/types/data.js",
     "./util/types/mst": "./esm/util/types/mst.js",
+    "./util/unknownSnapshotKeys": "./esm/util/unknownSnapshotKeys.js",
     "./util/unzip": "./esm/util/unzip.js",
     "./util/useEventCallback": "./esm/util/useEventCallback.js",
     "./util/useFetch": "./esm/util/useFetch.js",
@@ -249,6 +262,7 @@
     "./util/usePointerDrag": "./esm/util/usePointerDrag.js",
     "./util/useResizeDrag": "./esm/util/useResizeDrag.js",
     "./util/useRowVirtualScroll": "./esm/util/useRowVirtualScroll.js",
+    "./util/viewHighlights": "./esm/util/viewHighlights.js",
     "./util/viewStatus": "./esm/util/viewStatus.js",
     "./util/virtualRange": "./esm/util/virtualRange.js",
     "./util/wheelZoom": "./esm/util/wheelZoom.js",
@@ -264,17 +278,17 @@
     "@emotion/serialize": "^1.3.3",
     "@emotion/utils": "^1.4.2",
     "@floating-ui/react": "^0.27.20",
-    "@gmod/bgzf-filehandle": "^6.6.0",
+    "@gmod/bgzf-filehandle": "^6.7.0",
     "@gmod/range-cache-filehandle": "^1.4.0",
     "@gmod/shared-read-cache": "^1.7.2",
-    "@jbrowse/jexl": "^4.0.1",
-    "@jbrowse/mobx-state-tree": "^6.5.1",
+    "@jbrowse/jexl": "^5.0.2",
+    "@jbrowse/mobx-state-tree": "^6.5.2",
     "@jbrowse/quick-lru": "^7.3.5",
     "@leeoniya/ufuzzy": "^1.0.19",
     "@mui/icons-material": "^9.4.0",
     "@mui/material": "^9.4.0",
     "@mui/system": "^9.4.0",
-    "@mui/x-data-grid": "^9.13.0",
+    "@mui/x-data-grid": "^9.14.0",
     "canvas-sequencer-ts": "^3.1.3",
     "compare-versions": "^6.1.1",
     "dompurify": "^3.4.15",
@@ -285,8 +299,8 @@
     "pako-esm2": "^2.0.2",
     "rxjs": "^7.8.2",
     "source-map-js": "^1.2.1",
-    "@jbrowse/add-track-core": "^5.0.0-beta.8",
-    "@jbrowse/render-core": "^5.0.0-beta.8"
+    "@jbrowse/add-track-core": "^5.0.0-beta.9",
+    "@jbrowse/render-core": "^5.0.0-beta.9"
   },
   "peerDependencies": {
     "react": ">=19.0.0",

package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts

@@ -1,80 +0,0 @@
-declare const _default: {
-    source: string;
-    type: string;
-    start: number;
-    end: number;
-    strand: number;
-    phase: number;
-    refName: string;
-    id: string;
-    dbxref: string[];
-    name: string;
-    description: string;
-    gbkey: string;
-    gene: string;
-    gene_biotype: string;
-    gene_synonym: string[];
-    subfeatures: {
-        source: string;
-        type: string;
-        start: number;
-        end: number;
-        strand: number;
-        phase: number;
-        refName: string;
-        id: string;
-        parent: string;
-        dbxref: string[];
-        name: string;
-        gbkey: string;
-        gene: string;
-        product: string;
-        tag: string;
-        transcript_id: string;
-        subfeatures: ({
-            source: string;
-            type: string;
-            start: number;
-            end: number;
-            strand: number;
-            phase: number;
-            refName: string;
-            parent: string;
-            dbxref: string[];
-            gbkey: string;
-            gene: string;
-            product: string;
-            tag: string;
-            transcript_id: string;
-            uniqueId: string;
-            parentId: string;
-            id?: undefined;
-            name?: undefined;
-            protein_id?: undefined;
-        } | {
-            transcript_id?: undefined;
-            source: string;
-            type: string;
-            start: number;
-            end: number;
-            strand: number;
-            phase: number;
-            refName: string;
-            id: string;
-            parent: string;
-            dbxref: string[];
-            name: string;
-            gbkey: string;
-            gene: string;
-            product: string;
-            protein_id: string;
-            tag: string;
-            uniqueId: string;
-            parentId: string;
-        })[];
-        uniqueId: string;
-        parentId: string;
-    }[];
-    uniqueId: string;
-};
-export default _default;