@jbrowse/core 5.0.0-beta.8 → 5.0.0-beta.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (379) hide show
  1. package/README.md +427 -130
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +3 -2
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +5 -3
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +3 -5
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +8 -9
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +8 -13
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +2 -1
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +3 -3
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +5 -3
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +1 -0
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +1 -4
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +53 -0
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -8
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +0 -16
  19. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +7 -34
  20. package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
  21. package/esm/BaseFeatureWidget/formatDetails.d.ts +13 -29
  22. package/esm/BaseFeatureWidget/formatDetails.js +46 -79
  23. package/esm/BaseFeatureWidget/index.d.ts +1 -0
  24. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +35 -28
  25. package/esm/BaseFeatureWidget/stateModelFactory.js +94 -102
  26. package/esm/BaseFeatureWidget/types.d.ts +3 -0
  27. package/esm/BaseFeatureWidget/util.d.ts +0 -3
  28. package/esm/BaseFeatureWidget/util.js +0 -17
  29. package/esm/PluginLoader.d.ts +14 -9
  30. package/esm/PluginLoader.js +34 -26
  31. package/esm/PluginManager.d.ts +4 -4
  32. package/esm/PluginManager.js +1 -1
  33. package/esm/ReExports/coreModules.generated.d.ts +2 -0
  34. package/esm/ReExports/coreModules.generated.js +492 -0
  35. package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
  36. package/esm/ReExports/coreWorkerModules.generated.js +453 -0
  37. package/esm/ReExports/frameworkModules.d.ts +2 -0
  38. package/esm/ReExports/frameworkModules.js +67 -0
  39. package/esm/ReExports/frameworkShared.d.ts +12 -0
  40. package/esm/ReExports/frameworkShared.js +16 -0
  41. package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
  42. package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
  43. package/esm/ReExports/list.js +493 -79
  44. package/esm/ReExports/modules.d.ts +1 -1
  45. package/esm/ReExports/modules.js +10 -87
  46. package/esm/ReExports/registry.d.ts +1 -0
  47. package/esm/ReExports/registry.js +23 -5
  48. package/esm/ReExports/uiStub.d.ts +2 -1
  49. package/esm/ReExports/uiStub.js +24 -2
  50. package/esm/ReExports/workerModules.js +8 -12
  51. package/esm/TextSearch/TextSearchManager.d.ts +3 -12
  52. package/esm/TextSearch/TextSearchManager.js +22 -10
  53. package/esm/assemblyManager/assembly.d.ts +10 -14
  54. package/esm/assemblyManager/assembly.js +10 -14
  55. package/esm/assemblyManager/assemblyConfigSchema.d.ts +23 -81
  56. package/esm/assemblyManager/assemblyManager.d.ts +10 -16
  57. package/esm/assemblyManager/assemblyManager.js +7 -10
  58. package/esm/assemblyManager/loadRefNameMap.js +3 -3
  59. package/esm/configuration/configurationSchema.d.ts +75 -31
  60. package/esm/configuration/configurationSchema.js +74 -40
  61. package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
  62. package/esm/configuration/configurationSchemaUnion.js +59 -0
  63. package/esm/configuration/configurationSlot.d.ts +37 -12
  64. package/esm/configuration/configurationSlot.js +83 -22
  65. package/esm/configuration/formatAboutConfigSchema.d.ts +7 -21
  66. package/esm/configuration/formatDetailsConfigSchema.d.ts +11 -37
  67. package/esm/configuration/formatDetailsConfigSchema.js +10 -13
  68. package/esm/configuration/getConf.d.ts +17 -9
  69. package/esm/configuration/getConf.js +52 -7
  70. package/esm/configuration/index.d.ts +11 -4
  71. package/esm/configuration/index.js +7 -4
  72. package/esm/configuration/mergeFormatCallbacks.d.ts +6 -7
  73. package/esm/configuration/mergeFormatCallbacks.js +13 -10
  74. package/esm/configuration/readConfObject.d.ts +2 -22
  75. package/esm/configuration/readConfObject.js +15 -49
  76. package/esm/configuration/requirements.d.ts +37 -0
  77. package/esm/configuration/requirements.js +88 -0
  78. package/esm/configuration/schemaRegistry.d.ts +21 -1
  79. package/esm/configuration/schemaRegistry.js +11 -0
  80. package/esm/configuration/schemaTypes.d.ts +3 -0
  81. package/esm/configuration/schemaTypes.js +10 -0
  82. package/esm/configuration/slotFacade.d.ts +35 -4
  83. package/esm/configuration/slotFacade.js +96 -9
  84. package/esm/configuration/snapshotPreprocess.d.ts +27 -0
  85. package/esm/configuration/snapshotPreprocess.js +102 -0
  86. package/esm/configuration/types.d.ts +161 -22
  87. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +2 -2
  88. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +11 -2
  89. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +12 -1
  90. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +2 -3
  91. package/esm/data_adapters/BaseAdapter/featureDensity.js +2 -3
  92. package/esm/data_adapters/BaseAdapter/index.d.ts +22 -3
  93. package/esm/data_adapters/BaseAdapter/types.d.ts +3 -4
  94. package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
  95. package/esm/data_adapters/BaseAdapter/zoomRange.js +1 -0
  96. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -11
  97. package/esm/data_adapters/getSequenceSubAdapter.d.ts +1 -3
  98. package/esm/data_adapters/getSequenceSubAdapter.js +1 -3
  99. package/esm/pluggableElementTypes/AdapterType.d.ts +7 -7
  100. package/esm/pluggableElementTypes/RpcMethodType.d.ts +1 -1
  101. package/esm/pluggableElementTypes/RpcMethodType.js +3 -8
  102. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +1 -2
  103. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
  104. package/esm/pluggableElementTypes/index.d.ts +1 -1
  105. package/esm/pluggableElementTypes/index.js +1 -1
  106. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +17 -7
  107. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +45 -48
  108. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +40 -36
  109. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +10 -13
  110. package/esm/pluggableElementTypes/models/BaseTrackModel.js +6 -6
  111. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +37 -17
  112. package/esm/pluggableElementTypes/models/BaseViewModel.js +25 -10
  113. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +26 -16
  114. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +1 -1
  115. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -18
  116. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +5 -5
  117. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +26 -31
  118. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +57 -141
  119. package/esm/pluggableElementTypes/models/baseTrackConfig.js +22 -26
  120. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +2 -2
  121. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +3 -4
  122. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +3 -3
  123. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +15 -7
  124. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +38 -29
  125. package/esm/pluggableElementTypes/models/index.d.ts +1 -2
  126. package/esm/pluggableElementTypes/models/index.js +1 -2
  127. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +3 -3
  128. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +4 -4
  129. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +3 -3
  130. package/esm/rpc/BaseRpcDriver.d.ts +1 -2
  131. package/esm/rpc/BaseRpcDriver.js +23 -30
  132. package/esm/rpc/MainThreadRpcDriver.d.ts +2 -2
  133. package/esm/rpc/MainThreadRpcDriver.js +13 -8
  134. package/esm/rpc/RpcClient.d.ts +17 -6
  135. package/esm/rpc/RpcClient.js +42 -12
  136. package/esm/rpc/RpcManager.d.ts +8 -10
  137. package/esm/rpc/RpcManager.js +1 -1
  138. package/esm/rpc/RpcRegistry.d.ts +8 -2
  139. package/esm/rpc/RpcServer.d.ts +3 -1
  140. package/esm/rpc/RpcServer.js +19 -12
  141. package/esm/rpc/WebWorkerRpcDriver.d.ts +3 -3
  142. package/esm/rpc/WebWorkerRpcDriver.js +9 -47
  143. package/esm/rpc/byteBudget.d.ts +3 -5
  144. package/esm/rpc/byteBudget.js +4 -4
  145. package/esm/rpc/configSchema.d.ts +7 -21
  146. package/esm/rpc/coreRpcMethods.d.ts +1 -0
  147. package/esm/rpc/coreRpcMethods.js +1 -0
  148. package/esm/rpc/methods/CoreEncodeFeatures.d.ts +6 -5
  149. package/esm/rpc/methods/CoreEncodeFeatures.js +26 -31
  150. package/esm/rpc/methods/CoreGetEncodedFeature.d.ts +13 -0
  151. package/esm/rpc/methods/CoreGetEncodedFeature.js +31 -0
  152. package/esm/rpc/methods/CoreGetExportData.js +2 -2
  153. package/esm/rpc/methods/CoreGetFeatureDensity.js +2 -2
  154. package/esm/rpc/methods/CoreGetFeatures.js +2 -2
  155. package/esm/rpc/methods/CoreGetSequence.js +2 -2
  156. package/esm/rpc/methods/layerFeatures.d.ts +26 -0
  157. package/esm/rpc/methods/layerFeatures.js +40 -0
  158. package/esm/svg/SvgExport.js +3 -4
  159. package/esm/svg/SvgThemeProviders.d.ts +12 -0
  160. package/esm/svg/SvgThemeProviders.js +15 -0
  161. package/esm/svg/exportViewSvg.d.ts +32 -0
  162. package/esm/svg/exportViewSvg.js +13 -0
  163. package/esm/svg/normalizeSvgMarkup.d.ts +7 -0
  164. package/esm/svg/normalizeSvgMarkup.js +99 -0
  165. package/esm/svg/serializeSvg.d.ts +7 -0
  166. package/esm/svg/serializeSvg.js +11 -0
  167. package/esm/svg/svgReady.d.ts +8 -7
  168. package/esm/svg/svgReady.js +8 -7
  169. package/esm/svg/trackNames.d.ts +5 -5
  170. package/esm/svg/trackNames.js +6 -6
  171. package/esm/svg/wrapSvgExport.js +6 -74
  172. package/esm/ui/CascadingMenu.js +83 -86
  173. package/esm/ui/ErrorMessageStackTraceDialog.js +0 -5
  174. package/esm/ui/FileSelector/useInternetAccounts.d.ts +156 -96
  175. package/esm/ui/HoverMenu.d.ts +1 -2
  176. package/esm/ui/HoverMenu.js +6 -3
  177. package/esm/ui/JexlFilterDialog.d.ts +13 -10
  178. package/esm/ui/JexlFilterDialog.js +122 -49
  179. package/esm/ui/JexlFilterRowEditors.d.ts +15 -0
  180. package/esm/ui/JexlFilterRowEditors.js +90 -0
  181. package/esm/ui/LazyBaseTooltip.d.ts +4 -0
  182. package/esm/ui/LazyBaseTooltip.js +9 -0
  183. package/esm/ui/LoadingOverlay.js +3 -1
  184. package/esm/ui/MonospaceTextField.d.ts +2 -1
  185. package/esm/ui/MonospaceTextField.js +21 -19
  186. package/esm/ui/PaletteContext.d.ts +7 -9
  187. package/esm/ui/PaletteContext.js +24 -10
  188. package/esm/ui/RefNameAutocomplete/index.d.ts +1 -2
  189. package/esm/ui/RefNameAutocomplete/index.js +1 -1
  190. package/esm/ui/ScrollChrome.d.ts +6 -9
  191. package/esm/ui/ScrollChrome.js +5 -6
  192. package/esm/ui/ScrollEdgeShadow.d.ts +6 -9
  193. package/esm/ui/ScrollEdgeShadow.js +9 -24
  194. package/esm/ui/SettingsChangesTable.js +3 -3
  195. package/esm/ui/VerticalScrollbar.d.ts +13 -34
  196. package/esm/ui/VerticalScrollbar.js +29 -83
  197. package/esm/ui/ViewLoadingScreen.d.ts +2 -2
  198. package/esm/ui/ViewLoadingScreen.js +3 -3
  199. package/esm/ui/colorScale.d.ts +26 -1
  200. package/esm/ui/colorScale.js +28 -5
  201. package/esm/ui/colors.d.ts +49 -1
  202. package/esm/ui/colors.js +139 -4
  203. package/esm/ui/hoverBoxStyle.d.ts +14 -2
  204. package/esm/ui/hoverBoxStyle.js +17 -2
  205. package/esm/ui/index.d.ts +5 -3
  206. package/esm/ui/index.js +9 -7
  207. package/esm/ui/launchViewMenu.js +3 -3
  208. package/esm/ui/legendSpec.d.ts +2 -0
  209. package/esm/ui/legendSpec.js +3 -0
  210. package/esm/ui/palette.d.ts +0 -1
  211. package/esm/ui/palette.js +3 -27
  212. package/esm/ui/replaceViewAction.d.ts +1 -1
  213. package/esm/ui/replaceViewAction.js +1 -1
  214. package/esm/ui/theme.d.ts +1 -1
  215. package/esm/ui/theme.js +6 -40
  216. package/esm/ui/viewHeaderHeight.d.ts +1 -0
  217. package/esm/ui/viewHeaderHeight.js +1 -0
  218. package/esm/util/Base1DUtils.d.ts +1 -1
  219. package/esm/util/Base1DUtils.js +2 -2
  220. package/esm/util/SvgCanvas.d.ts +15 -13
  221. package/esm/util/SvgCanvas.js +72 -53
  222. package/esm/util/aborting.d.ts +39 -0
  223. package/esm/util/aborting.js +84 -0
  224. package/esm/util/adapterMetadata.d.ts +1 -1
  225. package/esm/util/adapterMetadata.js +6 -6
  226. package/esm/util/addAndShowTrack.d.ts +1 -4
  227. package/esm/util/addRelativeUris.d.ts +10 -2
  228. package/esm/util/addRelativeUris.js +22 -7
  229. package/esm/util/addTrackFromWidget.d.ts +2 -5
  230. package/esm/util/animationAllowed.d.ts +9 -0
  231. package/esm/util/animationAllowed.js +13 -0
  232. package/esm/util/applyRowResizeWheel.d.ts +10 -5
  233. package/esm/util/applyRowResizeWheel.js +10 -21
  234. package/esm/util/bandLayout.d.ts +4 -4
  235. package/esm/util/bandLayout.js +4 -4
  236. package/esm/util/bezierConnector.js +5 -4
  237. package/esm/util/bgzfWorkerPool.d.ts +20 -74
  238. package/esm/util/bgzfWorkerPool.js +20 -74
  239. package/esm/util/cachedSetup.d.ts +1 -1
  240. package/esm/util/cachedSetup.js +2 -2
  241. package/esm/util/categoricalField.d.ts +37 -0
  242. package/esm/util/categoricalField.js +52 -0
  243. package/esm/util/color/cssColorsLevel4.d.ts +1 -0
  244. package/esm/util/color/cssColorsLevel4.js +1 -0
  245. package/esm/util/color/index.d.ts +5 -3
  246. package/esm/util/color/index.js +7 -4
  247. package/esm/util/colorBits.d.ts +1 -2
  248. package/esm/util/colorBits.js +17 -39
  249. package/esm/util/colorRamp.d.ts +27 -1
  250. package/esm/util/colorRamp.js +56 -2
  251. package/esm/util/colorSchemes.d.ts +9 -0
  252. package/esm/util/colorSchemes.js +7 -0
  253. package/esm/util/{createStopTokenRotation.d.ts → createAbortRotation.d.ts} +11 -14
  254. package/esm/util/{createStopTokenRotation.js → createAbortRotation.js} +14 -26
  255. package/esm/util/cssColorParse.d.ts +15 -0
  256. package/esm/util/cssColorParse.js +53 -0
  257. package/esm/util/diagonalizeRegions.d.ts +2 -3
  258. package/esm/util/diagonalizeRegions.js +7 -12
  259. package/esm/util/expandLooseSearchIndex.d.ts +7 -0
  260. package/esm/util/expandLooseSearchIndex.js +25 -0
  261. package/esm/util/featureTransforms.d.ts +30 -3
  262. package/esm/util/featureTransforms.js +233 -36
  263. package/esm/util/fetchAndMaybeUnzip.js +5 -6
  264. package/esm/util/fetchContext.d.ts +5 -6
  265. package/esm/util/fetchContext.js +1 -1
  266. package/esm/util/fetchHub.d.ts +3 -1
  267. package/esm/util/fetchHub.js +2 -2
  268. package/esm/util/fetchSeq.d.ts +2 -3
  269. package/esm/util/fetchSeq.js +2 -2
  270. package/esm/util/fieldReader.d.ts +17 -0
  271. package/esm/util/fieldReader.js +62 -0
  272. package/esm/util/groupKeys.d.ts +75 -0
  273. package/esm/util/groupKeys.js +152 -0
  274. package/esm/util/highlights.d.ts +6 -4
  275. package/esm/util/highlights.js +12 -25
  276. package/esm/util/hooks.d.ts +1 -2
  277. package/esm/util/hooks.js +1 -2
  278. package/esm/util/index.d.ts +3 -3
  279. package/esm/util/index.js +4 -3
  280. package/esm/util/indexCandidates.js +1 -1
  281. package/esm/util/installFetch.d.ts +13 -10
  282. package/esm/util/installFetch.js +11 -10
  283. package/esm/util/installPrerequisiteFetch.d.ts +5 -3
  284. package/esm/util/installPrerequisiteFetch.js +3 -4
  285. package/esm/util/io/index.js +12 -12
  286. package/esm/util/isDataCurrent.d.ts +7 -5
  287. package/esm/util/isDataCurrent.js +9 -6
  288. package/esm/util/jexl.js +24 -21
  289. package/esm/util/jexlFilterRows.d.ts +89 -0
  290. package/esm/util/jexlFilterRows.js +252 -0
  291. package/esm/util/jexlFilters.d.ts +7 -5
  292. package/esm/util/jexlStrings.d.ts +3 -4
  293. package/esm/util/jexlStrings.js +2 -3
  294. package/esm/util/legendCandidates.d.ts +31 -27
  295. package/esm/util/legendCandidates.js +79 -53
  296. package/esm/util/localStorage.js +4 -4
  297. package/esm/util/markEncoding.d.ts +32 -16
  298. package/esm/util/markEncoding.js +177 -150
  299. package/esm/util/markEncodingTypes.d.ts +137 -66
  300. package/esm/util/mstUtils.d.ts +19 -22
  301. package/esm/util/mstUtils.js +19 -22
  302. package/esm/util/numericUtils.d.ts +7 -0
  303. package/esm/util/numericUtils.js +16 -0
  304. package/esm/util/numericValue.d.ts +14 -0
  305. package/esm/util/numericValue.js +34 -0
  306. package/esm/util/openFeatureWidget.js +1 -2
  307. package/esm/util/openViews.d.ts +1 -0
  308. package/esm/util/openViews.js +3 -3
  309. package/esm/util/parseLineByLine.d.ts +3 -4
  310. package/esm/util/parseLineByLine.js +7 -13
  311. package/esm/util/progress.d.ts +21 -21
  312. package/esm/util/progress.js +27 -26
  313. package/esm/util/renameRegions.d.ts +1 -2
  314. package/esm/util/renderToStaticMarkup.js +16 -16
  315. package/esm/util/rxjs.d.ts +7 -8
  316. package/esm/util/rxjs.js +12 -15
  317. package/esm/util/simpleFeature.d.ts +0 -1
  318. package/esm/util/svgColorProps.d.ts +11 -0
  319. package/esm/util/svgColorProps.js +28 -1
  320. package/esm/util/tabix.d.ts +3 -4
  321. package/esm/util/tabix.js +6 -7
  322. package/esm/util/thresholdScale.d.ts +54 -0
  323. package/esm/util/thresholdScale.js +112 -0
  324. package/esm/util/timeGate.d.ts +4 -5
  325. package/esm/util/timeGate.js +4 -5
  326. package/esm/util/trackConfigDelta.d.ts +22 -18
  327. package/esm/util/trackConfigDelta.js +40 -38
  328. package/esm/util/tracks.d.ts +27 -4
  329. package/esm/util/tracks.js +116 -43
  330. package/esm/util/translateTranscript.d.ts +44 -0
  331. package/esm/util/translateTranscript.js +102 -0
  332. package/esm/util/types/index.d.ts +19 -7
  333. package/esm/util/types/services.d.ts +1 -1
  334. package/esm/util/unknownSnapshotKeys.d.ts +15 -0
  335. package/esm/util/unknownSnapshotKeys.js +13 -0
  336. package/esm/util/useFeatureSequence.js +4 -4
  337. package/esm/util/useFetch.d.ts +3 -4
  338. package/esm/util/useFetch.js +5 -6
  339. package/esm/util/usePanelVirtualScroll.d.ts +7 -39
  340. package/esm/util/usePanelVirtualScroll.js +9 -40
  341. package/esm/util/useRowVirtualScroll.d.ts +6 -29
  342. package/esm/util/useRowVirtualScroll.js +8 -49
  343. package/esm/util/useVirtualScrollWheel.d.ts +20 -4
  344. package/esm/util/useVirtualScrollWheel.js +40 -84
  345. package/esm/util/viewHighlights.d.ts +3 -0
  346. package/esm/util/viewHighlights.js +5 -0
  347. package/esm/util/viewStatus.d.ts +24 -15
  348. package/esm/util/viewStatus.js +17 -0
  349. package/esm/util/withLaunchInput.d.ts +1 -1
  350. package/esm/util/withLaunchInput.js +0 -4
  351. package/package.json +26 -12
  352. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
  353. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
  354. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
  355. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
  356. package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
  357. package/esm/ReExports/BaseFeatureDetails.js +0 -10
  358. package/esm/ReExports/barrelOnlyNames.d.ts +0 -5
  359. package/esm/ReExports/barrelOnlyNames.js +0 -63
  360. package/esm/ReExports/index.d.ts +0 -1
  361. package/esm/ReExports/index.js +0 -1
  362. package/esm/ReExports/publicTracks.d.ts +0 -1
  363. package/esm/ReExports/publicTracks.js +0 -14
  364. package/esm/ReExports/publicUi.d.ts +0 -4
  365. package/esm/ReExports/publicUi.js +0 -33
  366. package/esm/ReExports/publicUtil.d.ts +0 -1
  367. package/esm/ReExports/publicUtil.js +0 -32
  368. package/esm/ReExports/sharedModules.d.ts +0 -96
  369. package/esm/ReExports/sharedModules.js +0 -66
  370. package/esm/ReExports/workerNamespaceNames.d.ts +0 -11
  371. package/esm/ReExports/workerNamespaceNames.js +0 -275
  372. package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +0 -51
  373. package/esm/pluggableElementTypes/models/HighlightsMixin.js +0 -78
  374. package/esm/ui/highlightChipReveal.d.ts +0 -32
  375. package/esm/ui/highlightChipReveal.js +0 -39
  376. package/esm/util/adapterConfigKey.d.ts +0 -12
  377. package/esm/util/adapterConfigKey.js +0 -14
  378. package/esm/util/stopToken.d.ts +0 -212
  379. package/esm/util/stopToken.js +0 -438
@@ -1,6 +1,6 @@
1
1
  import { enableContractReports } from '@jbrowse/render-core/contractReports';
2
- import { setReExportRegistry } from './ReExports/registry.js';
3
- import { isCJSPluginDefinition, isESMPluginDefinition, isUMDPluginDefinition, maybePluginUrl, pluginDescriptionString, } from './pluginDefinitions.js';
2
+ import { loudOnMissingModule, setReExportRegistry, } from './ReExports/registry.js';
3
+ import { isCJSPluginDefinition, isESMPluginDefinition, isUMDPluginDefinition, maybePluginUrl, pluginDescriptionString, pluginLabel, } from './pluginDefinitions.js';
4
4
  import { isElectron } from './util/index.js';
5
5
  import { isWebWorker } from './util/isWebWorker.js';
6
6
  /**
@@ -217,39 +217,36 @@ export default class PluginLoader {
217
217
  }
218
218
  return plugin.default;
219
219
  }
220
- reExportTarget;
220
+ reExports;
221
221
  /**
222
222
  * Ask for the runtime ABI (`JBrowseExports`) to be published on `target`
223
- * before any plugin bundle is evaluated. Records the target; the registry
224
- * itself is fetched in `loadSettled` below.
223
+ * before any plugin bundle is evaluated. Records the target and the loader;
224
+ * `loadSettled` fetches the registry, a ~126 KB gzipped module only a runtime
225
+ * plugin can use (see `ReExports/registry.ts` for why it cannot shrink).
225
226
  *
226
- * The split is the point. Every product calls this at startup, synchronously,
227
- * whether or not the config names a plugin — so importing the registry here
228
- * put it in every host's first paint. It is a ~126 KB gzipped module (see
229
- * `ReExports/registry.ts` for why it cannot shrink) that only a runtime plugin
230
- * can use, and loading one is async anyway.
227
+ * `registry` is the product's generated map — `reExports.generated.ts` on
228
+ * the main thread, `workerReExports.generated.ts` in its worker — which
229
+ * serves every `@jbrowse` package the product bundles. The caller names it
230
+ * because the registry serves this module: an `import()` of it from here is
231
+ * a cycle rolldown keeps in any host bundling this file, whether or not
232
+ * anything loads a plugin (EAGER_BUNDLE.md §3).
231
233
  */
232
- installGlobalReExports(target) {
233
- this.reExportTarget = target;
234
+ installGlobalReExports(target, registry) {
235
+ this.reExports = { target, registry };
234
236
  return this;
235
237
  }
236
238
  async publishReExports() {
237
- const target = this.reExportTarget;
238
- if (!target) {
239
+ if (!this.reExports) {
239
240
  return;
240
241
  }
241
- // a worker never renders: the same keys, with the UI ones stubbed, so a
242
- // plugin bundle evaluates there without fetching react-dom and Material UI
243
- const { default: ReExports } = isWebWorker()
244
- ? await import('./ReExports/workerModules.js')
245
- : await import('./ReExports/index.js');
246
- target.JBrowseExports = {
247
- ...ReExports,
248
- };
242
+ const { target, registry } = this.reExports;
243
+ const { default: ReExports } = await registry();
244
+ target.JBrowseExports =
245
+ loudOnMissingModule({ ...ReExports });
249
246
  // the synchronous half: `pluginManager.jbrequire(name)` is what a CJS
250
247
  // plugin calls, and it cannot await
251
248
  setReExportRegistry(ReExports);
252
- this.reExportTarget = undefined;
249
+ this.reExports = undefined;
253
250
  }
254
251
  /**
255
252
  * Loads every definition and separates the ones that worked from the ones
@@ -293,9 +290,20 @@ export default class PluginLoader {
293
290
  async load(baseUri) {
294
291
  const { records, failures } = await this.loadSettled(baseUri);
295
292
  // rethrown by definition order rather than by which rejected first, so the
296
- // error a strict caller sees doesn't depend on network timing
297
- if (failures[0]) {
298
- throw failures[0].error;
293
+ // error a strict caller sees doesn't depend on network timing.
294
+ //
295
+ // Named, because the RPC worker calls this: a plugin that throws while
296
+ // evaluating takes the whole RpcServer with it, and the bare error is
297
+ // whatever the bundle's module scope said — `Cannot read properties of
298
+ // undefined`, or the missing ABI key — with nothing saying which plugin
299
+ // read it. The message is carried rather than the error, since this one
300
+ // crosses postMessage and `serializeError` cannot clone an arbitrary
301
+ // `cause`.
302
+ const failure = failures[0];
303
+ if (failure) {
304
+ const { definition, error } = failure;
305
+ const detail = error instanceof Error ? error.message : String(error);
306
+ throw new Error(`plugin ${pluginLabel(definition)} failed: ${detail}`);
299
307
  }
300
308
  return records;
301
309
  }
@@ -311,8 +311,8 @@ export default class PluginManager {
311
311
  runtimePluginDefinitions: PluginDefinition[];
312
312
  elementCreationSchedule: PhasedScheduler<"adapter" | "add track workflow" | "connection" | "display" | "internet account" | "rpc method" | "text search adapter" | "track" | "view" | "widget">;
313
313
  pluggableElementsCreated: boolean;
314
- adapterTypes: TypeRecord<AdapterType>;
315
- textSearchAdapterTypes: TypeRecord<TextSearchAdapterType>;
314
+ adapterTypes: TypeRecord<AdapterType<any>>;
315
+ textSearchAdapterTypes: TypeRecord<TextSearchAdapterType<any>>;
316
316
  trackTypes: TypeRecord<TrackType>;
317
317
  displayTypes: TypeRecord<DisplayType>;
318
318
  connectionTypes: TypeRecord<ConnectionType>;
@@ -397,7 +397,7 @@ export default class PluginManager {
397
397
  jbrequire: (lib: string | AnyFunction | {
398
398
  default: AnyFunction;
399
399
  }) => any;
400
- getAdapterType(typeName: string): AdapterType;
400
+ getAdapterType(typeName: string): AdapterType<any>;
401
401
  /**
402
402
  * The name an adapter `type` registers under: itself, or the adapter that
403
403
  * declares it in `aliases`. A name nothing answers to comes back as written,
@@ -411,7 +411,7 @@ export default class PluginManager {
411
411
  * claims to be an adapter and wrong when you are asking whether it is one.
412
412
  */
413
413
  hasAdapterType(typeName: string): boolean;
414
- getTextSearchAdapterType(typeName: string): TextSearchAdapterType;
414
+ getTextSearchAdapterType(typeName: string): TextSearchAdapterType<any>;
415
415
  getTrackType(typeName: string): TrackType;
416
416
  getDisplayType(typeName: string): DisplayType;
417
417
  getViewType<N extends ViewTypeName>(typeName: N): Omit<ViewType, 'stateModel'> & {
@@ -476,7 +476,7 @@ export default class PluginManager {
476
476
  if (typeof lib === 'string') {
477
477
  const pack = this.lib[lib];
478
478
  if (!pack) {
479
- throw new TypeError(`No jbrequire re-export defined for package '${lib}'. If this package must be shared between plugins, add it to ReExports/list.ts. If it does not need to be shared, just import it normally.`);
479
+ throw new TypeError(`No jbrequire re-export defined for '${lib}'. The host serves what @jbrowse/core/ReExports/list names: the framework singletons, Material UI, and every subpath the bundled @jbrowse packages publish. Anything else, bundle into the plugin.`);
480
480
  }
481
481
  return pack;
482
482
  }
@@ -0,0 +1,2 @@
1
+ declare const libs: Record<string, unknown>;
2
+ export default libs;
@@ -0,0 +1,492 @@
1
+ // Generated by scripts/generateReExports.ts — do not edit by hand.
2
+ // The @jbrowse/core half of the runtime ABI on the main thread.
3
+ // Regenerate with `pnpm autogen`.
4
+ import * as m0 from '../assemblyManager/index.js';
5
+ import * as m1 from '../assemblyManager/assembly.js';
6
+ import * as m2 from '../assemblyManager/assemblyConfigSchema.js';
7
+ import * as m3 from '../BaseFeatureWidget/index.js';
8
+ import * as m4 from '../BaseFeatureWidget/BaseFeatureDetail/index.js';
9
+ import * as m5 from '../BaseFeatureWidget/BaseFeatureDetail/Attributes.js';
10
+ import * as m6 from '../BaseFeatureWidget/BaseFeatureDetail/BaseCard.js';
11
+ import * as m7 from '../BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js';
12
+ import * as m8 from '../BaseFeatureWidget/BaseFeatureDetail/Formatter.js';
13
+ import * as m9 from '../BaseFeatureWidget/BaseFeatureDetail/SimpleField.js';
14
+ import * as m10 from '../BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js';
15
+ import * as m11 from '../checkPlugins.js';
16
+ import * as m12 from '../configuration/index.js';
17
+ import * as m13 from '../configuration/configurationSchema.js';
18
+ import * as m14 from '../data_adapters/adapterSessionRefcount.js';
19
+ import * as m15 from '../data_adapters/BaseAdapter/index.js';
20
+ import * as m16 from '../data_adapters/BaseAdapter/getAdapterId.js';
21
+ import * as m17 from '../data_adapters/BaseAdapter/stats.js';
22
+ import * as m18 from '../data_adapters/BaseAdapter/types.js';
23
+ import * as m19 from '../data_adapters/BaseAdapter/zoomRange.js';
24
+ import * as m20 from '../data_adapters/dataAdapterCache.js';
25
+ import * as m21 from '../data_adapters/getFeatureAdapter.js';
26
+ import * as m22 from '../data_adapters/getSequenceSubAdapter.js';
27
+ import * as m23 from '../pluggableElementTypes/index.js';
28
+ import * as m24 from '../pluggableElementTypes/AdapterType.js';
29
+ import * as m25 from '../pluggableElementTypes/ConnectionType.js';
30
+ import * as m26 from '../pluggableElementTypes/DisplayType.js';
31
+ import * as m27 from '../pluggableElementTypes/InternetAccountType.js';
32
+ import * as m28 from '../pluggableElementTypes/models/index.js';
33
+ import * as m29 from '../pluggableElementTypes/models/assertDisplayContract.js';
34
+ import * as m30 from '../pluggableElementTypes/models/baseConnectionConfig.js';
35
+ import * as m31 from '../pluggableElementTypes/models/BaseViewModel.js';
36
+ import * as m32 from '../pluggableElementTypes/renderers/util/serializableFilterChain.js';
37
+ import * as m33 from '../pluggableElementTypes/RpcMethodType.js';
38
+ import * as m34 from '../pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js';
39
+ import * as m35 from '../pluggableElementTypes/RpcMethodTypeWithRenameRegion.js';
40
+ import * as m36 from '../pluggableElementTypes/RpcMethodTypeWithRenameRegions.js';
41
+ import * as m37 from '../pluggableElementTypes/TextSearchAdapterType.js';
42
+ import * as m38 from '../pluggableElementTypes/TrackType.js';
43
+ import * as m39 from '../pluggableElementTypes/ViewType.js';
44
+ import * as m40 from '../pluggableElementTypes/WidgetType.js';
45
+ import * as m41 from '../Plugin.js';
46
+ import * as m42 from '../pluginDefinitions.js';
47
+ import * as m43 from '../PluginLoader.js';
48
+ import * as m44 from '../PluginManager.js';
49
+ import * as m45 from '../rpc/byteBudget.js';
50
+ import * as m46 from '../rpc/RpcManager.js';
51
+ import * as m47 from '../rpc/RpcRegistry.js';
52
+ import * as m48 from '../rpc/WebWorkerRpcDriver.js';
53
+ import * as m49 from '../svg/constants.js';
54
+ import * as m50 from '../svg/exportViewSvg.js';
55
+ import * as m51 from '../svg/saveSvgAsImage.js';
56
+ import * as m52 from '../svg/serializeSvg.js';
57
+ import * as m53 from '../svg/SvgExport.js';
58
+ import * as m54 from '../svg/svgId.js';
59
+ import * as m55 from '../svg/svgReady.js';
60
+ import * as m56 from '../svg/SvgThemeProviders.js';
61
+ import * as m57 from '../svg/trackNames.js';
62
+ import * as m58 from '../svg/wrapSvgExport.js';
63
+ import * as m59 from '../TextSearch/BaseResults.js';
64
+ import * as m60 from '../TextSearch/TextSearchManager.js';
65
+ import * as m61 from '../ui/index.js';
66
+ import * as m62 from '../ui/AddCustomPluginDialog.js';
67
+ import * as m63 from '../ui/AddGenomePane.js';
68
+ import * as m64 from '../ui/AppLogo.js';
69
+ import * as m65 from '../ui/BaseTooltip.js';
70
+ import * as m66 from '../ui/buildExtraTrackMenuItems.js';
71
+ import * as m67 from '../ui/CascadingMenuButton.js';
72
+ import * as m68 from '../ui/ColorPicker.js';
73
+ import * as m69 from '../ui/colors.js';
74
+ import * as m70 from '../ui/colorScale.js';
75
+ import * as m71 from '../ui/ConfirmDialog.js';
76
+ import * as m72 from '../ui/DataGridFlexContainer.js';
77
+ import * as m73 from '../ui/Dialog.js';
78
+ import * as m74 from '../ui/DraggableDialog.js';
79
+ import * as m75 from '../ui/DropDownMenu.js';
80
+ import * as m76 from '../ui/EditableTypography.js';
81
+ import * as m77 from '../ui/ErrorBar.js';
82
+ import * as m78 from '../ui/ErrorBoundary.js';
83
+ import * as m79 from '../ui/ErrorMessageStackTraceDialog.js';
84
+ import * as m80 from '../ui/ErrorOverlay.js';
85
+ import * as m81 from '../ui/filterMenuItems.js';
86
+ import * as m82 from '../ui/gpuFallback.js';
87
+ import * as m83 from '../ui/GpuFallbackButton.js';
88
+ import * as m84 from '../ui/hoverBoxStyle.js';
89
+ import * as m85 from '../ui/HoverTooltip.js';
90
+ import * as m86 from '../ui/Icons.js';
91
+ import * as m87 from '../ui/InfoDialog.js';
92
+ import * as m88 from '../ui/JexlFilterDialog.js';
93
+ import * as m89 from '../ui/legendSpec.js';
94
+ import * as m90 from '../ui/LegendSwatchGlyph.js';
95
+ import * as m91 from '../ui/LoadingEllipses.js';
96
+ import * as m92 from '../ui/LoadingOverlay.js';
97
+ import * as m93 from '../ui/Logo.js';
98
+ import * as m94 from '../ui/measureLegendText.js';
99
+ import * as m95 from '../ui/Menu.js';
100
+ import * as m96 from '../ui/menuItems.js';
101
+ import * as m97 from '../ui/multiTrackMenuItems.js';
102
+ import * as m98 from '../ui/palette.js';
103
+ import * as m99 from '../ui/PaletteContext.js';
104
+ import * as m100 from '../ui/persistentScrollbarStyle.js';
105
+ import * as m101 from '../ui/PluggableComponents.js';
106
+ import * as m102 from '../ui/PluginStoreCard.js';
107
+ import * as m103 from '../ui/PopoverPicker.js';
108
+ import * as m104 from '../ui/ProgressChip.js';
109
+ import * as m105 from '../ui/ResizeHandle.js';
110
+ import * as m106 from '../ui/ReturnToImportFormDialog.js';
111
+ import * as m107 from '../ui/SanitizedHTML.js';
112
+ import * as m108 from '../ui/scrollZoomLabels.js';
113
+ import * as m109 from '../ui/ScrollZoomToggle.js';
114
+ import * as m110 from '../ui/ShareLinkField.js';
115
+ import * as m111 from '../ui/showSubMenu.js';
116
+ import * as m112 from '../ui/Snackbar.js';
117
+ import * as m113 from '../ui/SnackbarModel.js';
118
+ import * as m114 from '../ui/StackTraceButton.js';
119
+ import * as m115 from '../ui/styleTheme.js';
120
+ import * as m116 from '../ui/SvgColorLegend.js';
121
+ import * as m117 from '../ui/theme.js';
122
+ import * as m118 from '../ui/useCoalescedPointer.js';
123
+ import * as m119 from '../ui/useMouseTracking.js';
124
+ import * as m120 from '../ui/VerticalScrollbar.js';
125
+ import * as m121 from '../ui/zIndexes.js';
126
+ import * as m122 from '../util/index.js';
127
+ import * as m123 from '../util/aborting.js';
128
+ import * as m124 from '../util/adapterMetadata.js';
129
+ import * as m125 from '../util/addRelativeUris.js';
130
+ import * as m126 from '../util/analytics.js';
131
+ import * as m127 from '../util/animationAllowed.js';
132
+ import * as m128 from '../util/assemblyConfigUtils.js';
133
+ import * as m129 from '../util/bandHeight.js';
134
+ import * as m130 from '../util/bandLayout.js';
135
+ import * as m131 from '../util/Base1DUtils.js';
136
+ import * as m132 from '../util/Base1DViewModel.js';
137
+ import * as m133 from '../util/bgzfWorkerPool.js';
138
+ import * as m134 from '../util/blockTypes.js';
139
+ import * as m135 from '../util/cacheBudgets.js';
140
+ import * as m136 from '../util/calculateDynamicBlocks.js';
141
+ import * as m137 from '../util/calculateStaticBlocks.js';
142
+ import * as m138 from '../util/categoricalField.js';
143
+ import * as m139 from '../util/chooseGridPitch.js';
144
+ import * as m140 from '../util/color/index.js';
145
+ import * as m141 from '../util/colorBits.js';
146
+ import * as m142 from '../util/colord.js';
147
+ import * as m143 from '../util/colorRamp.js';
148
+ import * as m144 from '../util/colorSchemes.js';
149
+ import * as m145 from '../util/convertCodingSequenceToPeptides.js';
150
+ import * as m146 from '../util/copyText.js';
151
+ import * as m147 from '../util/createAbortRotation.js';
152
+ import * as m148 from '../util/createSvgRasterCanvas.js';
153
+ import * as m149 from '../util/deepEqual.js';
154
+ import * as m150 from '../util/deepMerge.js';
155
+ import * as m151 from '../util/diagonalizeRegions.js';
156
+ import * as m152 from '../util/eventPoint.js';
157
+ import * as m153 from '../util/expandLooseSearchIndex.js';
158
+ import * as m154 from '../util/featureTransforms.js';
159
+ import * as m155 from '../util/fetchContext.js';
160
+ import * as m156 from '../util/fetchHub.js';
161
+ import * as m157 from '../util/fetchPhases.js';
162
+ import * as m158 from '../util/fieldReader.js';
163
+ import * as m159 from '../util/fileHandleStore.js';
164
+ import * as m160 from '../util/FileSaver/index.js';
165
+ import * as m161 from '../util/flatbush/index.js';
166
+ import * as m162 from '../util/formatFastaStrings.js';
167
+ import * as m163 from '../util/frameCoalescer.js';
168
+ import * as m164 from '../util/freezeDeep.js';
169
+ import * as m165 from '../util/geneticCodes.js';
170
+ import * as m166 from '../util/getRelativeX.js';
171
+ import * as m167 from '../util/glyphNames.js';
172
+ import * as m168 from '../util/groupKeys.js';
173
+ import * as m169 from '../util/highlights.js';
174
+ import * as m170 from '../util/hooks.js';
175
+ import * as m171 from '../util/htmlText.js';
176
+ import * as m172 from '../util/indexCandidates.js';
177
+ import * as m173 from '../util/installClearHoverOnSurfaceMove.js';
178
+ import * as m174 from '../util/installFetch.js';
179
+ import * as m175 from '../util/installInitAutorun.js';
180
+ import * as m176 from '../util/installPrerequisiteFetch.js';
181
+ import * as m177 from '../util/io/index.js';
182
+ import * as m178 from '../util/io/RemoteFileWithRangeCache.js';
183
+ import * as m179 from '../util/isDataCurrent.js';
184
+ import * as m180 from '../util/jexl.js';
185
+ import * as m181 from '../util/jexlFilters.js';
186
+ import * as m182 from '../util/jexlStrings.js';
187
+ import * as m183 from '../util/layouts/index.js';
188
+ import * as m184 from '../util/layouts/GranularRectLayout.js';
189
+ import * as m185 from '../util/layouts/placeRect.js';
190
+ import * as m186 from '../util/lazyAfterAttach.js';
191
+ import * as m187 from '../util/leadingEdgeAutorun.js';
192
+ import * as m188 from '../util/legendCandidates.js';
193
+ import * as m189 from '../util/librpc.js';
194
+ import * as m190 from '../util/localStorage.js';
195
+ import * as m191 from '../util/makeAssembly.js';
196
+ import * as m192 from '../util/markEncoding.js';
197
+ import * as m193 from '../util/measureText.js';
198
+ import * as m194 from '../util/mst-reflection.js';
199
+ import * as m195 from '../util/mstUtils.js';
200
+ import * as m196 from '../util/nanoid.js';
201
+ import * as m197 from '../util/numericUtils.js';
202
+ import * as m198 from '../util/offscreenCanvasPonyfill.js';
203
+ import * as m199 from '../util/openViews.js';
204
+ import * as m200 from '../util/paintLayer.js';
205
+ import * as m201 from '../util/parseLineByLine.js';
206
+ import * as m202 from '../util/progress.js';
207
+ import * as m203 from '../util/range.js';
208
+ import * as m204 from '../util/renderToStaticMarkup.js';
209
+ import * as m205 from '../util/resolveRowHeight.js';
210
+ import * as m206 from '../util/rowStackGeometry.js';
211
+ import * as m207 from '../util/rxjs.js';
212
+ import * as m208 from '../util/sameStrings.js';
213
+ import * as m209 from '../util/setStackTraceLimit.js';
214
+ import * as m210 from '../util/simpleFeature.js';
215
+ import * as m211 from '../util/starFusion.js';
216
+ import * as m212 from '../util/stats.js';
217
+ import * as m213 from '../util/SvgCanvas.js';
218
+ import * as m214 from '../util/svgColorProps.js';
219
+ import * as m215 from '../util/tabix.js';
220
+ import * as m216 from '../util/thresholdScale.js';
221
+ import * as m217 from '../util/tickLabels.js';
222
+ import * as m218 from '../util/TimeTraveller.js';
223
+ import * as m219 from '../util/tracks.js';
224
+ import * as m220 from '../util/translateTranscript.js';
225
+ import * as m221 from '../util/tss-react/index.js';
226
+ import * as m222 from '../util/tss-react/types.js';
227
+ import * as m223 from '../util/types/index.js';
228
+ import * as m224 from '../util/types/data.js';
229
+ import * as m225 from '../util/types/mst.js';
230
+ import * as m226 from '../util/unknownSnapshotKeys.js';
231
+ import * as m227 from '../util/unzip.js';
232
+ import * as m228 from '../util/useEventCallback.js';
233
+ import * as m229 from '../util/useFetch.js';
234
+ import * as m230 from '../util/useFetchPlugins.js';
235
+ import * as m231 from '../util/useMeasure.js';
236
+ import * as m232 from '../util/usePanelVirtualScroll.js';
237
+ import * as m233 from '../util/usePanZoom.js';
238
+ import * as m234 from '../util/usePointerDrag.js';
239
+ import * as m235 from '../util/useResizeDrag.js';
240
+ import * as m236 from '../util/useRowVirtualScroll.js';
241
+ import * as m237 from '../util/viewHighlights.js';
242
+ import * as m238 from '../util/viewStatus.js';
243
+ import * as m239 from '../util/virtualRange.js';
244
+ import * as m240 from '../util/wheelZoom.js';
245
+ import * as m241 from '../util/whenViewSettled.js';
246
+ import * as m242 from '../util/withLaunchInput.js';
247
+ const libs = {
248
+ '@jbrowse/core/assemblyManager': { ...m0, __esModule: true },
249
+ '@jbrowse/core/assemblyManager/assembly': { ...m1, __esModule: true },
250
+ '@jbrowse/core/assemblyManager/assemblyConfigSchema': { ...m2, __esModule: true },
251
+ '@jbrowse/core/BaseFeatureWidget': m3,
252
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': { ...m4, __esModule: true },
253
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes': m5.default,
254
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard': m6.default,
255
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails': m7.default,
256
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Formatter': m8.default,
257
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/SimpleField': m9.default,
258
+ '@jbrowse/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog': m10.default,
259
+ '@jbrowse/core/checkPlugins': m11,
260
+ '@jbrowse/core/configuration': m12,
261
+ '@jbrowse/core/configuration/configurationSchema': m13,
262
+ '@jbrowse/core/data_adapters/adapterSessionRefcount': m14,
263
+ '@jbrowse/core/data_adapters/BaseAdapter': m15,
264
+ '@jbrowse/core/data_adapters/BaseAdapter/getAdapterId': m16,
265
+ '@jbrowse/core/data_adapters/BaseAdapter/stats': m17,
266
+ '@jbrowse/core/data_adapters/BaseAdapter/types': m18,
267
+ '@jbrowse/core/data_adapters/BaseAdapter/zoomRange': m19,
268
+ '@jbrowse/core/data_adapters/dataAdapterCache': m20,
269
+ '@jbrowse/core/data_adapters/getFeatureAdapter': m21,
270
+ '@jbrowse/core/data_adapters/getSequenceSubAdapter': m22,
271
+ '@jbrowse/core/pluggableElementTypes': m23,
272
+ '@jbrowse/core/pluggableElementTypes/AdapterType': m24.default,
273
+ '@jbrowse/core/pluggableElementTypes/ConnectionType': m25.default,
274
+ '@jbrowse/core/pluggableElementTypes/DisplayType': m26.default,
275
+ '@jbrowse/core/pluggableElementTypes/InternetAccountType': m27.default,
276
+ '@jbrowse/core/pluggableElementTypes/models': m28,
277
+ '@jbrowse/core/pluggableElementTypes/models/assertDisplayContract': m29,
278
+ '@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig': m30.default,
279
+ '@jbrowse/core/pluggableElementTypes/models/BaseViewModel': { ...m31, __esModule: true },
280
+ '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain': m32.default,
281
+ '@jbrowse/core/pluggableElementTypes/RpcMethodType': { ...m33, __esModule: true },
282
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions': m34.default,
283
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegion': m35.default,
284
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegions': m36.default,
285
+ '@jbrowse/core/pluggableElementTypes/TextSearchAdapterType': m37.default,
286
+ '@jbrowse/core/pluggableElementTypes/TrackType': m38.default,
287
+ '@jbrowse/core/pluggableElementTypes/ViewType': m39.default,
288
+ '@jbrowse/core/pluggableElementTypes/WidgetType': m40.default,
289
+ '@jbrowse/core/Plugin': m41.default,
290
+ '@jbrowse/core/pluginDefinitions': m42,
291
+ '@jbrowse/core/PluginLoader': { ...m43, __esModule: true },
292
+ '@jbrowse/core/PluginManager': { ...m44, __esModule: true },
293
+ '@jbrowse/core/rpc/byteBudget': m45,
294
+ '@jbrowse/core/rpc/RpcManager': m46.default,
295
+ '@jbrowse/core/rpc/RpcRegistry': m47,
296
+ '@jbrowse/core/rpc/WebWorkerRpcDriver': m48.default,
297
+ '@jbrowse/core/svg/constants': m49,
298
+ '@jbrowse/core/svg/exportViewSvg': m50,
299
+ '@jbrowse/core/svg/saveSvgAsImage': m51,
300
+ '@jbrowse/core/svg/serializeSvg': m52,
301
+ '@jbrowse/core/svg/SvgExport': m53,
302
+ '@jbrowse/core/svg/svgId': m54,
303
+ '@jbrowse/core/svg/svgReady': m55,
304
+ '@jbrowse/core/svg/SvgThemeProviders': m56,
305
+ '@jbrowse/core/svg/trackNames': m57,
306
+ '@jbrowse/core/svg/wrapSvgExport': m58,
307
+ '@jbrowse/core/TextSearch/BaseResults': { ...m59, __esModule: true },
308
+ '@jbrowse/core/TextSearch/TextSearchManager': m60.default,
309
+ '@jbrowse/core/ui': m61,
310
+ '@jbrowse/core/ui/AddCustomPluginDialog': m62.default,
311
+ '@jbrowse/core/ui/AddGenomePane': m63.default,
312
+ '@jbrowse/core/ui/AppLogo': m64.default,
313
+ '@jbrowse/core/ui/BaseTooltip': m65.default,
314
+ '@jbrowse/core/ui/buildExtraTrackMenuItems': m66,
315
+ '@jbrowse/core/ui/CascadingMenuButton': m67.default,
316
+ '@jbrowse/core/ui/ColorPicker': { ...m68, __esModule: true },
317
+ '@jbrowse/core/ui/colors': m69,
318
+ '@jbrowse/core/ui/colorScale': m70,
319
+ '@jbrowse/core/ui/ConfirmDialog': m71.default,
320
+ '@jbrowse/core/ui/DataGridFlexContainer': m72.default,
321
+ '@jbrowse/core/ui/Dialog': m73.default,
322
+ '@jbrowse/core/ui/DraggableDialog': m74.default,
323
+ '@jbrowse/core/ui/DropDownMenu': m75.default,
324
+ '@jbrowse/core/ui/EditableTypography': m76.default,
325
+ '@jbrowse/core/ui/ErrorBar': m77.default,
326
+ '@jbrowse/core/ui/ErrorBoundary': m78,
327
+ '@jbrowse/core/ui/ErrorMessageStackTraceDialog': m79.default,
328
+ '@jbrowse/core/ui/ErrorOverlay': m80.default,
329
+ '@jbrowse/core/ui/filterMenuItems': m81,
330
+ '@jbrowse/core/ui/gpuFallback': m82,
331
+ '@jbrowse/core/ui/GpuFallbackButton': m83.default,
332
+ '@jbrowse/core/ui/hoverBoxStyle': m84,
333
+ '@jbrowse/core/ui/HoverTooltip': m85.default,
334
+ '@jbrowse/core/ui/Icons': m86,
335
+ '@jbrowse/core/ui/InfoDialog': m87.default,
336
+ '@jbrowse/core/ui/JexlFilterDialog': m88.default,
337
+ '@jbrowse/core/ui/legendSpec': m89,
338
+ '@jbrowse/core/ui/LegendSwatchGlyph': m90,
339
+ '@jbrowse/core/ui/LoadingEllipses': m91.default,
340
+ '@jbrowse/core/ui/LoadingOverlay': { ...m92, __esModule: true },
341
+ '@jbrowse/core/ui/Logo': m93,
342
+ '@jbrowse/core/ui/measureLegendText': m94,
343
+ '@jbrowse/core/ui/Menu': m95.default,
344
+ '@jbrowse/core/ui/menuItems': m96,
345
+ '@jbrowse/core/ui/multiTrackMenuItems': m97,
346
+ '@jbrowse/core/ui/palette': m98,
347
+ '@jbrowse/core/ui/PaletteContext': m99,
348
+ '@jbrowse/core/ui/persistentScrollbarStyle': m100,
349
+ '@jbrowse/core/ui/PluggableComponents': m101.default,
350
+ '@jbrowse/core/ui/PluginStoreCard': m102.default,
351
+ '@jbrowse/core/ui/PopoverPicker': m103.default,
352
+ '@jbrowse/core/ui/ProgressChip': m104.default,
353
+ '@jbrowse/core/ui/ResizeHandle': m105.default,
354
+ '@jbrowse/core/ui/ReturnToImportFormDialog': m106.default,
355
+ '@jbrowse/core/ui/SanitizedHTML': m107.default,
356
+ '@jbrowse/core/ui/scrollZoomLabels': m108,
357
+ '@jbrowse/core/ui/ScrollZoomToggle': m109.default,
358
+ '@jbrowse/core/ui/ShareLinkField': m110.default,
359
+ '@jbrowse/core/ui/showSubMenu': m111,
360
+ '@jbrowse/core/ui/Snackbar': m112.default,
361
+ '@jbrowse/core/ui/SnackbarModel': m113.default,
362
+ '@jbrowse/core/ui/StackTraceButton': m114.default,
363
+ '@jbrowse/core/ui/styleTheme': m115,
364
+ '@jbrowse/core/ui/SvgColorLegend': { ...m116, __esModule: true },
365
+ '@jbrowse/core/ui/theme': m117,
366
+ '@jbrowse/core/ui/useCoalescedPointer': m118,
367
+ '@jbrowse/core/ui/useMouseTracking': m119,
368
+ '@jbrowse/core/ui/VerticalScrollbar': { ...m120, __esModule: true },
369
+ '@jbrowse/core/ui/zIndexes': m121,
370
+ '@jbrowse/core/util': m122,
371
+ '@jbrowse/core/util/aborting': m123,
372
+ '@jbrowse/core/util/adapterMetadata': m124,
373
+ '@jbrowse/core/util/addRelativeUris': m125,
374
+ '@jbrowse/core/util/analytics': m126,
375
+ '@jbrowse/core/util/animationAllowed': m127,
376
+ '@jbrowse/core/util/assemblyConfigUtils': m128,
377
+ '@jbrowse/core/util/bandHeight': m129,
378
+ '@jbrowse/core/util/bandLayout': m130,
379
+ '@jbrowse/core/util/Base1DUtils': m131,
380
+ '@jbrowse/core/util/Base1DViewModel': m132.default,
381
+ '@jbrowse/core/util/bgzfWorkerPool': m133,
382
+ '@jbrowse/core/util/blockTypes': m134,
383
+ '@jbrowse/core/util/cacheBudgets': m135,
384
+ '@jbrowse/core/util/calculateDynamicBlocks': m136.default,
385
+ '@jbrowse/core/util/calculateStaticBlocks': m137.default,
386
+ '@jbrowse/core/util/categoricalField': m138,
387
+ '@jbrowse/core/util/chooseGridPitch': m139,
388
+ '@jbrowse/core/util/color': m140,
389
+ '@jbrowse/core/util/colorBits': m141,
390
+ '@jbrowse/core/util/colord': m142,
391
+ '@jbrowse/core/util/colorRamp': m143,
392
+ '@jbrowse/core/util/colorSchemes': m144,
393
+ '@jbrowse/core/util/convertCodingSequenceToPeptides': m145,
394
+ '@jbrowse/core/util/copyText': m146,
395
+ '@jbrowse/core/util/createAbortRotation': m147,
396
+ '@jbrowse/core/util/createSvgRasterCanvas': m148,
397
+ '@jbrowse/core/util/deepEqual': m149,
398
+ '@jbrowse/core/util/deepMerge': m150,
399
+ '@jbrowse/core/util/diagonalizeRegions': m151,
400
+ '@jbrowse/core/util/eventPoint': m152,
401
+ '@jbrowse/core/util/expandLooseSearchIndex': m153,
402
+ '@jbrowse/core/util/featureTransforms': m154,
403
+ '@jbrowse/core/util/fetchContext': m155,
404
+ '@jbrowse/core/util/fetchHub': m156,
405
+ '@jbrowse/core/util/fetchPhases': m157,
406
+ '@jbrowse/core/util/fieldReader': m158,
407
+ '@jbrowse/core/util/fileHandleStore': m159,
408
+ '@jbrowse/core/util/FileSaver': m160,
409
+ '@jbrowse/core/util/flatbush': m161.default,
410
+ '@jbrowse/core/util/formatFastaStrings': m162,
411
+ '@jbrowse/core/util/frameCoalescer': m163,
412
+ '@jbrowse/core/util/freezeDeep': m164,
413
+ '@jbrowse/core/util/geneticCodes': m165,
414
+ '@jbrowse/core/util/getRelativeX': m166,
415
+ '@jbrowse/core/util/glyphNames': m167,
416
+ '@jbrowse/core/util/groupKeys': m168,
417
+ '@jbrowse/core/util/highlights': m169,
418
+ '@jbrowse/core/util/hooks': m170,
419
+ '@jbrowse/core/util/htmlText': m171,
420
+ '@jbrowse/core/util/indexCandidates': m172,
421
+ '@jbrowse/core/util/installClearHoverOnSurfaceMove': m173,
422
+ '@jbrowse/core/util/installFetch': m174,
423
+ '@jbrowse/core/util/installInitAutorun': m175,
424
+ '@jbrowse/core/util/installPrerequisiteFetch': m176,
425
+ '@jbrowse/core/util/io': m177,
426
+ '@jbrowse/core/util/io/RemoteFileWithRangeCache': m178,
427
+ '@jbrowse/core/util/isDataCurrent': m179,
428
+ '@jbrowse/core/util/jexl': m180.default,
429
+ '@jbrowse/core/util/jexlFilters': m181,
430
+ '@jbrowse/core/util/jexlStrings': m182,
431
+ '@jbrowse/core/util/layouts': m183,
432
+ '@jbrowse/core/util/layouts/GranularRectLayout': m184.default,
433
+ '@jbrowse/core/util/layouts/placeRect': m185,
434
+ '@jbrowse/core/util/lazyAfterAttach': m186,
435
+ '@jbrowse/core/util/leadingEdgeAutorun': m187,
436
+ '@jbrowse/core/util/legendCandidates': m188,
437
+ '@jbrowse/core/util/librpc': m189,
438
+ '@jbrowse/core/util/localStorage': m190,
439
+ '@jbrowse/core/util/makeAssembly': m191,
440
+ '@jbrowse/core/util/markEncoding': m192,
441
+ '@jbrowse/core/util/measureText': m193,
442
+ '@jbrowse/core/util/mst-reflection': m194,
443
+ '@jbrowse/core/util/mstUtils': m195,
444
+ '@jbrowse/core/util/nanoid': m196,
445
+ '@jbrowse/core/util/numericUtils': m197,
446
+ '@jbrowse/core/util/offscreenCanvasPonyfill': m198,
447
+ '@jbrowse/core/util/openViews': m199,
448
+ '@jbrowse/core/util/paintLayer': m200,
449
+ '@jbrowse/core/util/parseLineByLine': m201,
450
+ '@jbrowse/core/util/progress': m202,
451
+ '@jbrowse/core/util/range': m203,
452
+ '@jbrowse/core/util/renderToStaticMarkup': m204,
453
+ '@jbrowse/core/util/resolveRowHeight': m205,
454
+ '@jbrowse/core/util/rowStackGeometry': m206,
455
+ '@jbrowse/core/util/rxjs': m207,
456
+ '@jbrowse/core/util/sameStrings': m208,
457
+ '@jbrowse/core/util/setStackTraceLimit': m209,
458
+ '@jbrowse/core/util/simpleFeature': { ...m210, __esModule: true },
459
+ '@jbrowse/core/util/starFusion': m211,
460
+ '@jbrowse/core/util/stats': m212,
461
+ '@jbrowse/core/util/SvgCanvas': m213,
462
+ '@jbrowse/core/util/svgColorProps': m214,
463
+ '@jbrowse/core/util/tabix': m215,
464
+ '@jbrowse/core/util/thresholdScale': m216,
465
+ '@jbrowse/core/util/tickLabels': m217,
466
+ '@jbrowse/core/util/TimeTraveller': m218.default,
467
+ '@jbrowse/core/util/tracks': m219,
468
+ '@jbrowse/core/util/translateTranscript': m220,
469
+ '@jbrowse/core/util/tss-react': m221,
470
+ '@jbrowse/core/util/tss-react/types': m222,
471
+ '@jbrowse/core/util/types': m223,
472
+ '@jbrowse/core/util/types/data': m224,
473
+ '@jbrowse/core/util/types/mst': m225,
474
+ '@jbrowse/core/util/unknownSnapshotKeys': m226,
475
+ '@jbrowse/core/util/unzip': m227,
476
+ '@jbrowse/core/util/useEventCallback': m228,
477
+ '@jbrowse/core/util/useFetch': m229,
478
+ '@jbrowse/core/util/useFetchPlugins': m230,
479
+ '@jbrowse/core/util/useMeasure': m231.default,
480
+ '@jbrowse/core/util/usePanelVirtualScroll': m232,
481
+ '@jbrowse/core/util/usePanZoom': m233,
482
+ '@jbrowse/core/util/usePointerDrag': m234,
483
+ '@jbrowse/core/util/useResizeDrag': m235,
484
+ '@jbrowse/core/util/useRowVirtualScroll': m236,
485
+ '@jbrowse/core/util/viewHighlights': m237,
486
+ '@jbrowse/core/util/viewStatus': m238,
487
+ '@jbrowse/core/util/virtualRange': m239,
488
+ '@jbrowse/core/util/wheelZoom': m240,
489
+ '@jbrowse/core/util/whenViewSettled': m241,
490
+ '@jbrowse/core/util/withLaunchInput': m242,
491
+ };
492
+ export default libs;
@@ -0,0 +1,2 @@
1
+ declare const libs: Record<string, unknown>;
2
+ export default libs;