@jbrowse/core 5.0.0-beta.7 → 5.0.0-beta.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (379) hide show
  1. package/README.md +427 -130
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +3 -2
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +5 -3
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +3 -5
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +8 -9
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +8 -13
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +2 -1
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +3 -3
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +5 -3
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +1 -0
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +1 -4
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +53 -0
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -8
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +0 -16
  19. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +7 -34
  20. package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
  21. package/esm/BaseFeatureWidget/formatDetails.d.ts +13 -29
  22. package/esm/BaseFeatureWidget/formatDetails.js +46 -79
  23. package/esm/BaseFeatureWidget/index.d.ts +1 -0
  24. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +35 -28
  25. package/esm/BaseFeatureWidget/stateModelFactory.js +94 -102
  26. package/esm/BaseFeatureWidget/types.d.ts +3 -0
  27. package/esm/BaseFeatureWidget/util.d.ts +0 -3
  28. package/esm/BaseFeatureWidget/util.js +0 -17
  29. package/esm/PluginLoader.d.ts +14 -9
  30. package/esm/PluginLoader.js +34 -26
  31. package/esm/PluginManager.d.ts +4 -4
  32. package/esm/PluginManager.js +1 -1
  33. package/esm/ReExports/coreModules.generated.d.ts +2 -0
  34. package/esm/ReExports/coreModules.generated.js +492 -0
  35. package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
  36. package/esm/ReExports/coreWorkerModules.generated.js +453 -0
  37. package/esm/ReExports/frameworkModules.d.ts +2 -0
  38. package/esm/ReExports/frameworkModules.js +67 -0
  39. package/esm/ReExports/frameworkShared.d.ts +12 -0
  40. package/esm/ReExports/frameworkShared.js +16 -0
  41. package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
  42. package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
  43. package/esm/ReExports/list.js +493 -79
  44. package/esm/ReExports/modules.d.ts +1 -1
  45. package/esm/ReExports/modules.js +10 -87
  46. package/esm/ReExports/registry.d.ts +1 -0
  47. package/esm/ReExports/registry.js +23 -5
  48. package/esm/ReExports/uiStub.d.ts +2 -1
  49. package/esm/ReExports/uiStub.js +24 -2
  50. package/esm/ReExports/workerModules.js +8 -12
  51. package/esm/TextSearch/TextSearchManager.d.ts +3 -12
  52. package/esm/TextSearch/TextSearchManager.js +22 -10
  53. package/esm/assemblyManager/assembly.d.ts +10 -14
  54. package/esm/assemblyManager/assembly.js +10 -14
  55. package/esm/assemblyManager/assemblyConfigSchema.d.ts +23 -81
  56. package/esm/assemblyManager/assemblyManager.d.ts +10 -16
  57. package/esm/assemblyManager/assemblyManager.js +7 -10
  58. package/esm/assemblyManager/loadRefNameMap.js +3 -3
  59. package/esm/configuration/configurationSchema.d.ts +75 -31
  60. package/esm/configuration/configurationSchema.js +74 -40
  61. package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
  62. package/esm/configuration/configurationSchemaUnion.js +59 -0
  63. package/esm/configuration/configurationSlot.d.ts +37 -12
  64. package/esm/configuration/configurationSlot.js +83 -22
  65. package/esm/configuration/formatAboutConfigSchema.d.ts +7 -21
  66. package/esm/configuration/formatDetailsConfigSchema.d.ts +11 -37
  67. package/esm/configuration/formatDetailsConfigSchema.js +10 -13
  68. package/esm/configuration/getConf.d.ts +17 -9
  69. package/esm/configuration/getConf.js +52 -7
  70. package/esm/configuration/index.d.ts +11 -4
  71. package/esm/configuration/index.js +7 -4
  72. package/esm/configuration/mergeFormatCallbacks.d.ts +6 -7
  73. package/esm/configuration/mergeFormatCallbacks.js +13 -10
  74. package/esm/configuration/readConfObject.d.ts +2 -22
  75. package/esm/configuration/readConfObject.js +15 -49
  76. package/esm/configuration/requirements.d.ts +37 -0
  77. package/esm/configuration/requirements.js +88 -0
  78. package/esm/configuration/schemaRegistry.d.ts +21 -1
  79. package/esm/configuration/schemaRegistry.js +11 -0
  80. package/esm/configuration/schemaTypes.d.ts +3 -0
  81. package/esm/configuration/schemaTypes.js +10 -0
  82. package/esm/configuration/slotFacade.d.ts +35 -4
  83. package/esm/configuration/slotFacade.js +96 -9
  84. package/esm/configuration/snapshotPreprocess.d.ts +27 -0
  85. package/esm/configuration/snapshotPreprocess.js +102 -0
  86. package/esm/configuration/types.d.ts +161 -22
  87. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +2 -2
  88. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +11 -2
  89. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +12 -1
  90. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +2 -3
  91. package/esm/data_adapters/BaseAdapter/featureDensity.js +2 -3
  92. package/esm/data_adapters/BaseAdapter/index.d.ts +22 -3
  93. package/esm/data_adapters/BaseAdapter/types.d.ts +3 -4
  94. package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
  95. package/esm/data_adapters/BaseAdapter/zoomRange.js +1 -0
  96. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -11
  97. package/esm/data_adapters/getSequenceSubAdapter.d.ts +1 -3
  98. package/esm/data_adapters/getSequenceSubAdapter.js +1 -3
  99. package/esm/pluggableElementTypes/AdapterType.d.ts +7 -7
  100. package/esm/pluggableElementTypes/RpcMethodType.d.ts +1 -1
  101. package/esm/pluggableElementTypes/RpcMethodType.js +3 -8
  102. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +1 -2
  103. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
  104. package/esm/pluggableElementTypes/index.d.ts +1 -1
  105. package/esm/pluggableElementTypes/index.js +1 -1
  106. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +17 -7
  107. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +45 -48
  108. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +40 -36
  109. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +10 -13
  110. package/esm/pluggableElementTypes/models/BaseTrackModel.js +6 -6
  111. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +37 -17
  112. package/esm/pluggableElementTypes/models/BaseViewModel.js +25 -10
  113. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +26 -16
  114. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +1 -1
  115. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -18
  116. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +5 -5
  117. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +26 -31
  118. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +57 -141
  119. package/esm/pluggableElementTypes/models/baseTrackConfig.js +22 -26
  120. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +2 -2
  121. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +3 -4
  122. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +3 -3
  123. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +15 -7
  124. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +38 -29
  125. package/esm/pluggableElementTypes/models/index.d.ts +1 -2
  126. package/esm/pluggableElementTypes/models/index.js +1 -2
  127. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +3 -3
  128. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +4 -4
  129. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +3 -3
  130. package/esm/rpc/BaseRpcDriver.d.ts +1 -2
  131. package/esm/rpc/BaseRpcDriver.js +23 -30
  132. package/esm/rpc/MainThreadRpcDriver.d.ts +2 -2
  133. package/esm/rpc/MainThreadRpcDriver.js +13 -8
  134. package/esm/rpc/RpcClient.d.ts +17 -6
  135. package/esm/rpc/RpcClient.js +42 -12
  136. package/esm/rpc/RpcManager.d.ts +8 -10
  137. package/esm/rpc/RpcManager.js +1 -1
  138. package/esm/rpc/RpcRegistry.d.ts +8 -2
  139. package/esm/rpc/RpcServer.d.ts +3 -1
  140. package/esm/rpc/RpcServer.js +19 -12
  141. package/esm/rpc/WebWorkerRpcDriver.d.ts +3 -3
  142. package/esm/rpc/WebWorkerRpcDriver.js +9 -47
  143. package/esm/rpc/byteBudget.d.ts +3 -5
  144. package/esm/rpc/byteBudget.js +4 -4
  145. package/esm/rpc/configSchema.d.ts +7 -21
  146. package/esm/rpc/coreRpcMethods.d.ts +1 -0
  147. package/esm/rpc/coreRpcMethods.js +1 -0
  148. package/esm/rpc/methods/CoreEncodeFeatures.d.ts +6 -5
  149. package/esm/rpc/methods/CoreEncodeFeatures.js +26 -31
  150. package/esm/rpc/methods/CoreGetEncodedFeature.d.ts +13 -0
  151. package/esm/rpc/methods/CoreGetEncodedFeature.js +31 -0
  152. package/esm/rpc/methods/CoreGetExportData.js +2 -2
  153. package/esm/rpc/methods/CoreGetFeatureDensity.js +2 -2
  154. package/esm/rpc/methods/CoreGetFeatures.js +2 -2
  155. package/esm/rpc/methods/CoreGetSequence.js +2 -2
  156. package/esm/rpc/methods/layerFeatures.d.ts +26 -0
  157. package/esm/rpc/methods/layerFeatures.js +40 -0
  158. package/esm/svg/SvgExport.js +3 -4
  159. package/esm/svg/SvgThemeProviders.d.ts +12 -0
  160. package/esm/svg/SvgThemeProviders.js +15 -0
  161. package/esm/svg/exportViewSvg.d.ts +32 -0
  162. package/esm/svg/exportViewSvg.js +13 -0
  163. package/esm/svg/normalizeSvgMarkup.d.ts +7 -0
  164. package/esm/svg/normalizeSvgMarkup.js +99 -0
  165. package/esm/svg/serializeSvg.d.ts +7 -0
  166. package/esm/svg/serializeSvg.js +11 -0
  167. package/esm/svg/svgReady.d.ts +8 -7
  168. package/esm/svg/svgReady.js +8 -7
  169. package/esm/svg/trackNames.d.ts +5 -5
  170. package/esm/svg/trackNames.js +6 -6
  171. package/esm/svg/wrapSvgExport.js +6 -74
  172. package/esm/ui/CascadingMenu.js +83 -86
  173. package/esm/ui/ErrorMessageStackTraceDialog.js +0 -5
  174. package/esm/ui/FileSelector/useInternetAccounts.d.ts +156 -96
  175. package/esm/ui/HoverMenu.d.ts +1 -2
  176. package/esm/ui/HoverMenu.js +6 -3
  177. package/esm/ui/JexlFilterDialog.d.ts +13 -10
  178. package/esm/ui/JexlFilterDialog.js +122 -49
  179. package/esm/ui/JexlFilterRowEditors.d.ts +15 -0
  180. package/esm/ui/JexlFilterRowEditors.js +90 -0
  181. package/esm/ui/LazyBaseTooltip.d.ts +4 -0
  182. package/esm/ui/LazyBaseTooltip.js +9 -0
  183. package/esm/ui/LoadingOverlay.js +3 -1
  184. package/esm/ui/MonospaceTextField.d.ts +2 -1
  185. package/esm/ui/MonospaceTextField.js +21 -19
  186. package/esm/ui/PaletteContext.d.ts +7 -9
  187. package/esm/ui/PaletteContext.js +24 -10
  188. package/esm/ui/RefNameAutocomplete/index.d.ts +1 -2
  189. package/esm/ui/RefNameAutocomplete/index.js +1 -1
  190. package/esm/ui/ScrollChrome.d.ts +6 -9
  191. package/esm/ui/ScrollChrome.js +5 -6
  192. package/esm/ui/ScrollEdgeShadow.d.ts +6 -9
  193. package/esm/ui/ScrollEdgeShadow.js +9 -24
  194. package/esm/ui/SettingsChangesTable.js +3 -3
  195. package/esm/ui/VerticalScrollbar.d.ts +13 -34
  196. package/esm/ui/VerticalScrollbar.js +29 -83
  197. package/esm/ui/ViewLoadingScreen.d.ts +2 -2
  198. package/esm/ui/ViewLoadingScreen.js +3 -3
  199. package/esm/ui/colorScale.d.ts +26 -1
  200. package/esm/ui/colorScale.js +28 -5
  201. package/esm/ui/colors.d.ts +49 -1
  202. package/esm/ui/colors.js +139 -4
  203. package/esm/ui/hoverBoxStyle.d.ts +14 -2
  204. package/esm/ui/hoverBoxStyle.js +17 -2
  205. package/esm/ui/index.d.ts +5 -3
  206. package/esm/ui/index.js +9 -7
  207. package/esm/ui/launchViewMenu.js +3 -3
  208. package/esm/ui/legendSpec.d.ts +2 -0
  209. package/esm/ui/legendSpec.js +3 -0
  210. package/esm/ui/palette.d.ts +0 -1
  211. package/esm/ui/palette.js +3 -27
  212. package/esm/ui/replaceViewAction.d.ts +1 -1
  213. package/esm/ui/replaceViewAction.js +1 -1
  214. package/esm/ui/theme.d.ts +1 -1
  215. package/esm/ui/theme.js +6 -40
  216. package/esm/ui/viewHeaderHeight.d.ts +1 -0
  217. package/esm/ui/viewHeaderHeight.js +1 -0
  218. package/esm/util/Base1DUtils.d.ts +1 -1
  219. package/esm/util/Base1DUtils.js +2 -2
  220. package/esm/util/SvgCanvas.d.ts +15 -13
  221. package/esm/util/SvgCanvas.js +72 -53
  222. package/esm/util/aborting.d.ts +39 -0
  223. package/esm/util/aborting.js +84 -0
  224. package/esm/util/adapterMetadata.d.ts +1 -1
  225. package/esm/util/adapterMetadata.js +6 -6
  226. package/esm/util/addAndShowTrack.d.ts +1 -4
  227. package/esm/util/addRelativeUris.d.ts +10 -2
  228. package/esm/util/addRelativeUris.js +22 -7
  229. package/esm/util/addTrackFromWidget.d.ts +2 -5
  230. package/esm/util/animationAllowed.d.ts +9 -0
  231. package/esm/util/animationAllowed.js +13 -0
  232. package/esm/util/applyRowResizeWheel.d.ts +10 -5
  233. package/esm/util/applyRowResizeWheel.js +10 -21
  234. package/esm/util/bandLayout.d.ts +4 -4
  235. package/esm/util/bandLayout.js +4 -4
  236. package/esm/util/bezierConnector.js +5 -4
  237. package/esm/util/bgzfWorkerPool.d.ts +20 -74
  238. package/esm/util/bgzfWorkerPool.js +20 -74
  239. package/esm/util/cachedSetup.d.ts +1 -1
  240. package/esm/util/cachedSetup.js +2 -2
  241. package/esm/util/categoricalField.d.ts +37 -0
  242. package/esm/util/categoricalField.js +52 -0
  243. package/esm/util/color/cssColorsLevel4.d.ts +1 -0
  244. package/esm/util/color/cssColorsLevel4.js +1 -0
  245. package/esm/util/color/index.d.ts +5 -3
  246. package/esm/util/color/index.js +7 -4
  247. package/esm/util/colorBits.d.ts +1 -2
  248. package/esm/util/colorBits.js +17 -39
  249. package/esm/util/colorRamp.d.ts +27 -1
  250. package/esm/util/colorRamp.js +56 -2
  251. package/esm/util/colorSchemes.d.ts +9 -0
  252. package/esm/util/colorSchemes.js +7 -0
  253. package/esm/util/{createStopTokenRotation.d.ts → createAbortRotation.d.ts} +11 -14
  254. package/esm/util/{createStopTokenRotation.js → createAbortRotation.js} +14 -26
  255. package/esm/util/cssColorParse.d.ts +15 -0
  256. package/esm/util/cssColorParse.js +53 -0
  257. package/esm/util/diagonalizeRegions.d.ts +2 -3
  258. package/esm/util/diagonalizeRegions.js +7 -12
  259. package/esm/util/expandLooseSearchIndex.d.ts +7 -0
  260. package/esm/util/expandLooseSearchIndex.js +25 -0
  261. package/esm/util/featureTransforms.d.ts +30 -3
  262. package/esm/util/featureTransforms.js +233 -36
  263. package/esm/util/fetchAndMaybeUnzip.js +5 -6
  264. package/esm/util/fetchContext.d.ts +5 -6
  265. package/esm/util/fetchContext.js +1 -1
  266. package/esm/util/fetchHub.d.ts +3 -1
  267. package/esm/util/fetchHub.js +2 -2
  268. package/esm/util/fetchSeq.d.ts +2 -3
  269. package/esm/util/fetchSeq.js +2 -2
  270. package/esm/util/fieldReader.d.ts +17 -0
  271. package/esm/util/fieldReader.js +62 -0
  272. package/esm/util/groupKeys.d.ts +75 -0
  273. package/esm/util/groupKeys.js +152 -0
  274. package/esm/util/highlights.d.ts +6 -4
  275. package/esm/util/highlights.js +12 -25
  276. package/esm/util/hooks.d.ts +1 -2
  277. package/esm/util/hooks.js +1 -2
  278. package/esm/util/index.d.ts +3 -3
  279. package/esm/util/index.js +4 -3
  280. package/esm/util/indexCandidates.js +1 -1
  281. package/esm/util/installFetch.d.ts +13 -10
  282. package/esm/util/installFetch.js +11 -10
  283. package/esm/util/installPrerequisiteFetch.d.ts +5 -3
  284. package/esm/util/installPrerequisiteFetch.js +3 -4
  285. package/esm/util/io/index.js +12 -12
  286. package/esm/util/isDataCurrent.d.ts +7 -5
  287. package/esm/util/isDataCurrent.js +9 -6
  288. package/esm/util/jexl.js +24 -21
  289. package/esm/util/jexlFilterRows.d.ts +89 -0
  290. package/esm/util/jexlFilterRows.js +252 -0
  291. package/esm/util/jexlFilters.d.ts +7 -5
  292. package/esm/util/jexlStrings.d.ts +3 -4
  293. package/esm/util/jexlStrings.js +2 -3
  294. package/esm/util/legendCandidates.d.ts +31 -27
  295. package/esm/util/legendCandidates.js +79 -53
  296. package/esm/util/localStorage.js +4 -4
  297. package/esm/util/markEncoding.d.ts +32 -16
  298. package/esm/util/markEncoding.js +177 -150
  299. package/esm/util/markEncodingTypes.d.ts +137 -66
  300. package/esm/util/mstUtils.d.ts +19 -22
  301. package/esm/util/mstUtils.js +19 -22
  302. package/esm/util/numericUtils.d.ts +7 -0
  303. package/esm/util/numericUtils.js +16 -0
  304. package/esm/util/numericValue.d.ts +14 -0
  305. package/esm/util/numericValue.js +34 -0
  306. package/esm/util/openFeatureWidget.js +1 -2
  307. package/esm/util/openViews.d.ts +1 -0
  308. package/esm/util/openViews.js +3 -3
  309. package/esm/util/parseLineByLine.d.ts +3 -4
  310. package/esm/util/parseLineByLine.js +7 -13
  311. package/esm/util/progress.d.ts +21 -21
  312. package/esm/util/progress.js +27 -26
  313. package/esm/util/renameRegions.d.ts +1 -2
  314. package/esm/util/renderToStaticMarkup.js +16 -16
  315. package/esm/util/rxjs.d.ts +7 -8
  316. package/esm/util/rxjs.js +12 -15
  317. package/esm/util/simpleFeature.d.ts +0 -1
  318. package/esm/util/svgColorProps.d.ts +11 -0
  319. package/esm/util/svgColorProps.js +28 -1
  320. package/esm/util/tabix.d.ts +3 -4
  321. package/esm/util/tabix.js +6 -7
  322. package/esm/util/thresholdScale.d.ts +54 -0
  323. package/esm/util/thresholdScale.js +112 -0
  324. package/esm/util/timeGate.d.ts +4 -5
  325. package/esm/util/timeGate.js +4 -5
  326. package/esm/util/trackConfigDelta.d.ts +22 -18
  327. package/esm/util/trackConfigDelta.js +40 -38
  328. package/esm/util/tracks.d.ts +27 -4
  329. package/esm/util/tracks.js +116 -43
  330. package/esm/util/translateTranscript.d.ts +44 -0
  331. package/esm/util/translateTranscript.js +102 -0
  332. package/esm/util/types/index.d.ts +19 -7
  333. package/esm/util/types/services.d.ts +1 -1
  334. package/esm/util/unknownSnapshotKeys.d.ts +15 -0
  335. package/esm/util/unknownSnapshotKeys.js +13 -0
  336. package/esm/util/useFeatureSequence.js +4 -4
  337. package/esm/util/useFetch.d.ts +3 -4
  338. package/esm/util/useFetch.js +5 -6
  339. package/esm/util/usePanelVirtualScroll.d.ts +7 -39
  340. package/esm/util/usePanelVirtualScroll.js +9 -40
  341. package/esm/util/useRowVirtualScroll.d.ts +6 -29
  342. package/esm/util/useRowVirtualScroll.js +8 -49
  343. package/esm/util/useVirtualScrollWheel.d.ts +20 -4
  344. package/esm/util/useVirtualScrollWheel.js +40 -84
  345. package/esm/util/viewHighlights.d.ts +3 -0
  346. package/esm/util/viewHighlights.js +5 -0
  347. package/esm/util/viewStatus.d.ts +24 -15
  348. package/esm/util/viewStatus.js +17 -0
  349. package/esm/util/withLaunchInput.d.ts +1 -1
  350. package/esm/util/withLaunchInput.js +0 -4
  351. package/package.json +26 -12
  352. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
  353. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
  354. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
  355. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
  356. package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
  357. package/esm/ReExports/BaseFeatureDetails.js +0 -10
  358. package/esm/ReExports/barrelOnlyNames.d.ts +0 -5
  359. package/esm/ReExports/barrelOnlyNames.js +0 -63
  360. package/esm/ReExports/index.d.ts +0 -1
  361. package/esm/ReExports/index.js +0 -1
  362. package/esm/ReExports/publicTracks.d.ts +0 -1
  363. package/esm/ReExports/publicTracks.js +0 -14
  364. package/esm/ReExports/publicUi.d.ts +0 -4
  365. package/esm/ReExports/publicUi.js +0 -33
  366. package/esm/ReExports/publicUtil.d.ts +0 -1
  367. package/esm/ReExports/publicUtil.js +0 -32
  368. package/esm/ReExports/sharedModules.d.ts +0 -96
  369. package/esm/ReExports/sharedModules.js +0 -66
  370. package/esm/ReExports/workerNamespaceNames.d.ts +0 -11
  371. package/esm/ReExports/workerNamespaceNames.js +0 -275
  372. package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +0 -51
  373. package/esm/pluggableElementTypes/models/HighlightsMixin.js +0 -78
  374. package/esm/ui/highlightChipReveal.d.ts +0 -32
  375. package/esm/ui/highlightChipReveal.js +0 -39
  376. package/esm/util/adapterConfigKey.d.ts +0 -12
  377. package/esm/util/adapterConfigKey.js +0 -14
  378. package/esm/util/stopToken.d.ts +0 -212
  379. package/esm/util/stopToken.js +0 -438
@@ -1,100 +1,514 @@
1
- import { MUI_COMPONENT_NAMES } from './muiComponentNames.js';
2
- /**
3
- * Used by plugin build systems to determine if a module is provided by JBrowse
4
- * globally and thus doesn't need to be bundled. A check in ./modules.tsx makes
5
- * sure this is in sync with the re-exported modules.
6
- *
7
- * Using this instead of just Object.keys(modules) allows this file to be
8
- * easily used by downstream tooling like simple esbuild scripts, rollup
9
- * configs, etc. without actually importing all the modules in modules.tsx,
10
- * which a Object.keys(modules) would do
11
- */
12
- // Per-component MUI subpaths, and the legacy `@material-ui/core/*` aliases
13
- // below, both derived from the one name list — see muiComponentNames.ts for why
14
- // that list is its own MUI-free module.
15
- const muiComponentSubpaths = MUI_COMPONENT_NAMES.map(n => `@mui/material/${n}`);
1
+ // Generated by scripts/generateReExports.ts — do not edit by hand.
2
+ // Every specifier a runtime plugin may externalize and read off the host: the framework singletons, Material UI, and every subpath the served @jbrowse packages publish. Plugin build tooling reads this file; it imports nothing so that stays cheap.
3
+ // Regenerate with `pnpm autogen`.
16
4
  export default [
17
- 'mobx',
18
5
  '@jbrowse/mobx-state-tree',
6
+ '@mui/material',
7
+ '@mui/material/Accordion',
8
+ '@mui/material/AccordionActions',
9
+ '@mui/material/AccordionDetails',
10
+ '@mui/material/AccordionSummary',
11
+ '@mui/material/Alert',
12
+ '@mui/material/AlertTitle',
13
+ '@mui/material/Autocomplete',
14
+ '@mui/material/Avatar',
15
+ '@mui/material/AvatarGroup',
16
+ '@mui/material/Backdrop',
17
+ '@mui/material/Badge',
18
+ '@mui/material/Box',
19
+ '@mui/material/Breadcrumbs',
20
+ '@mui/material/Button',
21
+ '@mui/material/ButtonGroup',
22
+ '@mui/material/Card',
23
+ '@mui/material/CardActionArea',
24
+ '@mui/material/CardActions',
25
+ '@mui/material/CardContent',
26
+ '@mui/material/CardHeader',
27
+ '@mui/material/CardMedia',
28
+ '@mui/material/Checkbox',
29
+ '@mui/material/Chip',
30
+ '@mui/material/CircularProgress',
31
+ '@mui/material/ClickAwayListener',
32
+ '@mui/material/Collapse',
33
+ '@mui/material/Container',
34
+ '@mui/material/Dialog',
35
+ '@mui/material/DialogActions',
36
+ '@mui/material/DialogContent',
37
+ '@mui/material/DialogContentText',
38
+ '@mui/material/DialogTitle',
39
+ '@mui/material/Divider',
40
+ '@mui/material/Drawer',
41
+ '@mui/material/Fab',
42
+ '@mui/material/Fade',
43
+ '@mui/material/FilledInput',
44
+ '@mui/material/FormControl',
45
+ '@mui/material/FormControlLabel',
46
+ '@mui/material/FormGroup',
47
+ '@mui/material/FormHelperText',
48
+ '@mui/material/FormLabel',
49
+ '@mui/material/Grid',
50
+ '@mui/material/Grid2',
51
+ '@mui/material/Grow',
52
+ '@mui/material/Icon',
53
+ '@mui/material/IconButton',
54
+ '@mui/material/Input',
55
+ '@mui/material/InputAdornment',
56
+ '@mui/material/InputBase',
57
+ '@mui/material/InputLabel',
58
+ '@mui/material/LinearProgress',
59
+ '@mui/material/Link',
60
+ '@mui/material/List',
61
+ '@mui/material/ListItem',
62
+ '@mui/material/ListItemAvatar',
63
+ '@mui/material/ListItemButton',
64
+ '@mui/material/ListItemIcon',
65
+ '@mui/material/ListItemSecondaryAction',
66
+ '@mui/material/ListItemText',
67
+ '@mui/material/ListSubheader',
68
+ '@mui/material/Menu',
69
+ '@mui/material/MenuItem',
70
+ '@mui/material/MenuList',
71
+ '@mui/material/Modal',
72
+ '@mui/material/NativeSelect',
73
+ '@mui/material/OutlinedInput',
74
+ '@mui/material/Pagination',
75
+ '@mui/material/PaginationItem',
76
+ '@mui/material/Paper',
77
+ '@mui/material/Popover',
78
+ '@mui/material/Popper',
79
+ '@mui/material/Portal',
80
+ '@mui/material/Radio',
81
+ '@mui/material/RadioGroup',
82
+ '@mui/material/Rating',
83
+ '@mui/material/ScopedCssBaseline',
84
+ '@mui/material/Select',
85
+ '@mui/material/Skeleton',
86
+ '@mui/material/Slider',
87
+ '@mui/material/Snackbar',
88
+ '@mui/material/SnackbarContent',
89
+ '@mui/material/SpeedDial',
90
+ '@mui/material/SpeedDialAction',
91
+ '@mui/material/SpeedDialIcon',
92
+ '@mui/material/Stack',
93
+ '@mui/material/Step',
94
+ '@mui/material/StepButton',
95
+ '@mui/material/StepConnector',
96
+ '@mui/material/StepIcon',
97
+ '@mui/material/StepLabel',
98
+ '@mui/material/Stepper',
99
+ '@mui/material/styles',
100
+ '@mui/material/SvgIcon',
101
+ '@mui/material/Switch',
102
+ '@mui/material/Tab',
103
+ '@mui/material/Table',
104
+ '@mui/material/TableBody',
105
+ '@mui/material/TableCell',
106
+ '@mui/material/TableContainer',
107
+ '@mui/material/TableFooter',
108
+ '@mui/material/TableHead',
109
+ '@mui/material/TablePagination',
110
+ '@mui/material/TableRow',
111
+ '@mui/material/TableSortLabel',
112
+ '@mui/material/Tabs',
113
+ '@mui/material/TextareaAutosize',
114
+ '@mui/material/TextField',
115
+ '@mui/material/ToggleButton',
116
+ '@mui/material/ToggleButtonGroup',
117
+ '@mui/material/Toolbar',
118
+ '@mui/material/Tooltip',
119
+ '@mui/material/Typography',
120
+ '@mui/material/utils',
121
+ '@mui/x-data-grid',
122
+ 'mobx',
123
+ 'mobx-react',
19
124
  'mobx-state-tree',
20
125
  'react',
21
- 'react/jsx-runtime',
22
126
  'react-dom',
23
127
  'react-dom/client',
24
- 'mobx-react',
25
- '@mui/x-data-grid',
26
- '@mui/material/utils',
27
- '@material-ui/core/utils',
128
+ 'react/jsx-runtime',
28
129
  'tss-react',
29
130
  'tss-react/mui',
30
- '@material-ui/core',
31
- '@mui/material',
32
- '@mui/material/styles',
33
- '@material-ui/core/styles',
34
- ...muiComponentSubpaths.map(p => p.replace('@mui/material/', '@material-ui/core/')),
35
- ...muiComponentSubpaths,
36
- '@material-ui/lab/ToggleButton',
37
- '@material-ui/lab/ToggleButtonGroup',
38
- '@material-ui/lab/Autocomplete',
39
- '@material-ui/lab/Alert',
40
- '@material-ui/lab',
41
- // The `@jbrowse/core` subpaths below are the ones a plugin may import and get
42
- // the host's copy of. Each carries a `#reexport <what it provides>` line,
43
- // which renders the table in the dependencies-and-re-exports guide
44
- // (website/scripts/api-docs/generateReExportDocs.ts) — so the guide stops
45
- // restating this list, which is what left it five paths short. A new subpath
46
- // needs the tag or the generator fails.
47
- //
48
- // Only the `@jbrowse/core` entries are tagged: the framework and MUI ones
49
- // above are described by category in the guide's prose, not one row each.
50
- // #reexport The base `Plugin` class your plugin extends
51
- '@jbrowse/core/Plugin',
52
- // #reexport `ViewType`, `AdapterType`, `DisplayType`, `TrackType`, `WidgetType` in one import, for the `install` method that registers several
131
+ '@jbrowse/core/assemblyManager',
132
+ '@jbrowse/core/assemblyManager/assembly',
133
+ '@jbrowse/core/assemblyManager/assemblyConfigSchema',
134
+ '@jbrowse/core/BaseFeatureWidget',
135
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail',
136
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes',
137
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard',
138
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails',
139
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Formatter',
140
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/SimpleField',
141
+ '@jbrowse/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog',
142
+ '@jbrowse/core/checkPlugins',
143
+ '@jbrowse/core/configuration',
144
+ '@jbrowse/core/configuration/configurationSchema',
145
+ '@jbrowse/core/data_adapters/adapterSessionRefcount',
146
+ '@jbrowse/core/data_adapters/BaseAdapter',
147
+ '@jbrowse/core/data_adapters/BaseAdapter/getAdapterId',
148
+ '@jbrowse/core/data_adapters/BaseAdapter/stats',
149
+ '@jbrowse/core/data_adapters/BaseAdapter/types',
150
+ '@jbrowse/core/data_adapters/BaseAdapter/zoomRange',
151
+ '@jbrowse/core/data_adapters/dataAdapterCache',
152
+ '@jbrowse/core/data_adapters/getFeatureAdapter',
153
+ '@jbrowse/core/data_adapters/getSequenceSubAdapter',
53
154
  '@jbrowse/core/pluggableElementTypes',
54
- // #reexport Just the `ViewType` class, registered with `addViewType`
55
- '@jbrowse/core/pluggableElementTypes/ViewType',
56
- // #reexport Just the `AdapterType` class, registered with `addAdapterType`
57
155
  '@jbrowse/core/pluggableElementTypes/AdapterType',
58
- // #reexport Just the `DisplayType` class, registered with `addDisplayType`
156
+ '@jbrowse/core/pluggableElementTypes/ConnectionType',
59
157
  '@jbrowse/core/pluggableElementTypes/DisplayType',
60
- // #reexport Just the `TrackType` class, registered with `addTrackType`
158
+ '@jbrowse/core/pluggableElementTypes/InternetAccountType',
159
+ '@jbrowse/core/pluggableElementTypes/models',
160
+ '@jbrowse/core/pluggableElementTypes/models/assertDisplayContract',
161
+ '@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig',
162
+ '@jbrowse/core/pluggableElementTypes/models/BaseViewModel',
163
+ '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain',
164
+ '@jbrowse/core/pluggableElementTypes/RpcMethodType',
165
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions',
166
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegion',
167
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegions',
168
+ '@jbrowse/core/pluggableElementTypes/TextSearchAdapterType',
61
169
  '@jbrowse/core/pluggableElementTypes/TrackType',
62
- // #reexport Just the `WidgetType` class, registered with `addWidgetType`
170
+ '@jbrowse/core/pluggableElementTypes/ViewType',
63
171
  '@jbrowse/core/pluggableElementTypes/WidgetType',
64
- // #reexport Base MST models for tracks and displays to compose with
65
- '@jbrowse/core/pluggableElementTypes/models',
66
- // #reexport `ConfigurationSchema`, `ConfigurationReference`, `readConfObject`, `getConf`
67
- '@jbrowse/core/configuration',
68
- // #reexport Reusable MST types like `ElementId` and `Region`
69
- '@jbrowse/core/util/types/mst',
70
- // #reexport Shared UI components — dialogs, menus, error and loading states
172
+ '@jbrowse/core/Plugin',
173
+ '@jbrowse/core/pluginDefinitions',
174
+ '@jbrowse/core/PluginLoader',
175
+ '@jbrowse/core/PluginManager',
176
+ '@jbrowse/core/rpc/byteBudget',
177
+ '@jbrowse/core/rpc/RpcManager',
178
+ '@jbrowse/core/rpc/RpcRegistry',
179
+ '@jbrowse/core/rpc/WebWorkerRpcDriver',
180
+ '@jbrowse/core/svg/constants',
181
+ '@jbrowse/core/svg/exportViewSvg',
182
+ '@jbrowse/core/svg/saveSvgAsImage',
183
+ '@jbrowse/core/svg/serializeSvg',
184
+ '@jbrowse/core/svg/SvgExport',
185
+ '@jbrowse/core/svg/svgId',
186
+ '@jbrowse/core/svg/svgReady',
187
+ '@jbrowse/core/svg/SvgThemeProviders',
188
+ '@jbrowse/core/svg/trackNames',
189
+ '@jbrowse/core/svg/wrapSvgExport',
190
+ '@jbrowse/core/TextSearch/BaseResults',
191
+ '@jbrowse/core/TextSearch/TextSearchManager',
71
192
  '@jbrowse/core/ui',
72
- // #reexport The JBrowse MUI theme
73
- '@jbrowse/core/ui/theme',
74
- // #reexport The same colors and `resolvePalette` without Material UI in the module graph, for worker and renderer code
75
- '@jbrowse/core/ui/palette',
76
- // #reexport The hover tooltip, kept out of the `ui` barrel so @floating-ui stays off the startup path
193
+ '@jbrowse/core/ui/AddCustomPluginDialog',
194
+ '@jbrowse/core/ui/AddGenomePane',
195
+ '@jbrowse/core/ui/AppLogo',
77
196
  '@jbrowse/core/ui/BaseTooltip',
78
- // #reexport Core helpers: `getSession`, `getContainingView`, `Feature`, region and coordinate utilities
197
+ '@jbrowse/core/ui/buildExtraTrackMenuItems',
198
+ '@jbrowse/core/ui/CascadingMenuButton',
199
+ '@jbrowse/core/ui/ColorPicker',
200
+ '@jbrowse/core/ui/colors',
201
+ '@jbrowse/core/ui/colorScale',
202
+ '@jbrowse/core/ui/ConfirmDialog',
203
+ '@jbrowse/core/ui/DataGridFlexContainer',
204
+ '@jbrowse/core/ui/Dialog',
205
+ '@jbrowse/core/ui/DraggableDialog',
206
+ '@jbrowse/core/ui/DropDownMenu',
207
+ '@jbrowse/core/ui/EditableTypography',
208
+ '@jbrowse/core/ui/ErrorBar',
209
+ '@jbrowse/core/ui/ErrorBoundary',
210
+ '@jbrowse/core/ui/ErrorMessageStackTraceDialog',
211
+ '@jbrowse/core/ui/ErrorOverlay',
212
+ '@jbrowse/core/ui/filterMenuItems',
213
+ '@jbrowse/core/ui/gpuFallback',
214
+ '@jbrowse/core/ui/GpuFallbackButton',
215
+ '@jbrowse/core/ui/hoverBoxStyle',
216
+ '@jbrowse/core/ui/HoverTooltip',
217
+ '@jbrowse/core/ui/Icons',
218
+ '@jbrowse/core/ui/InfoDialog',
219
+ '@jbrowse/core/ui/JexlFilterDialog',
220
+ '@jbrowse/core/ui/legendSpec',
221
+ '@jbrowse/core/ui/LegendSwatchGlyph',
222
+ '@jbrowse/core/ui/LoadingEllipses',
223
+ '@jbrowse/core/ui/LoadingOverlay',
224
+ '@jbrowse/core/ui/Logo',
225
+ '@jbrowse/core/ui/measureLegendText',
226
+ '@jbrowse/core/ui/Menu',
227
+ '@jbrowse/core/ui/menuItems',
228
+ '@jbrowse/core/ui/multiTrackMenuItems',
229
+ '@jbrowse/core/ui/palette',
230
+ '@jbrowse/core/ui/PaletteContext',
231
+ '@jbrowse/core/ui/persistentScrollbarStyle',
232
+ '@jbrowse/core/ui/PluggableComponents',
233
+ '@jbrowse/core/ui/PluginStoreCard',
234
+ '@jbrowse/core/ui/PopoverPicker',
235
+ '@jbrowse/core/ui/ProgressChip',
236
+ '@jbrowse/core/ui/ResizeHandle',
237
+ '@jbrowse/core/ui/ReturnToImportFormDialog',
238
+ '@jbrowse/core/ui/SanitizedHTML',
239
+ '@jbrowse/core/ui/scrollZoomLabels',
240
+ '@jbrowse/core/ui/ScrollZoomToggle',
241
+ '@jbrowse/core/ui/ShareLinkField',
242
+ '@jbrowse/core/ui/showSubMenu',
243
+ '@jbrowse/core/ui/Snackbar',
244
+ '@jbrowse/core/ui/SnackbarModel',
245
+ '@jbrowse/core/ui/StackTraceButton',
246
+ '@jbrowse/core/ui/styleTheme',
247
+ '@jbrowse/core/ui/SvgColorLegend',
248
+ '@jbrowse/core/ui/theme',
249
+ '@jbrowse/core/ui/useCoalescedPointer',
250
+ '@jbrowse/core/ui/useMouseTracking',
251
+ '@jbrowse/core/ui/VerticalScrollbar',
252
+ '@jbrowse/core/ui/zIndexes',
79
253
  '@jbrowse/core/util',
80
- // #reexport Color parsing and manipulation helpers
81
- '@jbrowse/core/util/color',
82
- // #reexport Feature layout (packing) helpers
83
- '@jbrowse/core/util/layouts',
84
- // #reexport Track and adapter config helpers
85
- '@jbrowse/core/util/tracks',
86
- // #reexport The 1D (bp↔px) view model the linear views are built on
254
+ '@jbrowse/core/util/aborting',
255
+ '@jbrowse/core/util/adapterMetadata',
256
+ '@jbrowse/core/util/addRelativeUris',
257
+ '@jbrowse/core/util/analytics',
258
+ '@jbrowse/core/util/animationAllowed',
259
+ '@jbrowse/core/util/assemblyConfigUtils',
260
+ '@jbrowse/core/util/bandHeight',
261
+ '@jbrowse/core/util/bandLayout',
262
+ '@jbrowse/core/util/Base1DUtils',
87
263
  '@jbrowse/core/util/Base1DViewModel',
88
- // #reexport `openLocation` and the file-handle helpers
264
+ '@jbrowse/core/util/bgzfWorkerPool',
265
+ '@jbrowse/core/util/blockTypes',
266
+ '@jbrowse/core/util/cacheBudgets',
267
+ '@jbrowse/core/util/calculateDynamicBlocks',
268
+ '@jbrowse/core/util/calculateStaticBlocks',
269
+ '@jbrowse/core/util/categoricalField',
270
+ '@jbrowse/core/util/chooseGridPitch',
271
+ '@jbrowse/core/util/color',
272
+ '@jbrowse/core/util/colorBits',
273
+ '@jbrowse/core/util/colord',
274
+ '@jbrowse/core/util/colorRamp',
275
+ '@jbrowse/core/util/colorSchemes',
276
+ '@jbrowse/core/util/convertCodingSequenceToPeptides',
277
+ '@jbrowse/core/util/copyText',
278
+ '@jbrowse/core/util/createAbortRotation',
279
+ '@jbrowse/core/util/createSvgRasterCanvas',
280
+ '@jbrowse/core/util/deepEqual',
281
+ '@jbrowse/core/util/deepMerge',
282
+ '@jbrowse/core/util/diagonalizeRegions',
283
+ '@jbrowse/core/util/eventPoint',
284
+ '@jbrowse/core/util/expandLooseSearchIndex',
285
+ '@jbrowse/core/util/featureTransforms',
286
+ '@jbrowse/core/util/fetchContext',
287
+ '@jbrowse/core/util/fetchHub',
288
+ '@jbrowse/core/util/fetchPhases',
289
+ '@jbrowse/core/util/fieldReader',
290
+ '@jbrowse/core/util/fileHandleStore',
291
+ '@jbrowse/core/util/FileSaver',
292
+ '@jbrowse/core/util/flatbush',
293
+ '@jbrowse/core/util/formatFastaStrings',
294
+ '@jbrowse/core/util/frameCoalescer',
295
+ '@jbrowse/core/util/freezeDeep',
296
+ '@jbrowse/core/util/geneticCodes',
297
+ '@jbrowse/core/util/getRelativeX',
298
+ '@jbrowse/core/util/glyphNames',
299
+ '@jbrowse/core/util/groupKeys',
300
+ '@jbrowse/core/util/highlights',
301
+ '@jbrowse/core/util/hooks',
302
+ '@jbrowse/core/util/htmlText',
303
+ '@jbrowse/core/util/indexCandidates',
304
+ '@jbrowse/core/util/installClearHoverOnSurfaceMove',
305
+ '@jbrowse/core/util/installFetch',
306
+ '@jbrowse/core/util/installInitAutorun',
307
+ '@jbrowse/core/util/installPrerequisiteFetch',
89
308
  '@jbrowse/core/util/io',
90
- // #reexport Helpers for inspecting MST types
309
+ '@jbrowse/core/util/io/RemoteFileWithRangeCache',
310
+ '@jbrowse/core/util/isDataCurrent',
311
+ '@jbrowse/core/util/jexl',
312
+ '@jbrowse/core/util/jexlFilters',
313
+ '@jbrowse/core/util/jexlStrings',
314
+ '@jbrowse/core/util/layouts',
315
+ '@jbrowse/core/util/layouts/GranularRectLayout',
316
+ '@jbrowse/core/util/layouts/placeRect',
317
+ '@jbrowse/core/util/lazyAfterAttach',
318
+ '@jbrowse/core/util/leadingEdgeAutorun',
319
+ '@jbrowse/core/util/legendCandidates',
320
+ '@jbrowse/core/util/librpc',
321
+ '@jbrowse/core/util/localStorage',
322
+ '@jbrowse/core/util/makeAssembly',
323
+ '@jbrowse/core/util/markEncoding',
324
+ '@jbrowse/core/util/measureText',
91
325
  '@jbrowse/core/util/mst-reflection',
92
- // #reexport The RxJS re-exports an adapter's `getFeatures` stream is built from
326
+ '@jbrowse/core/util/mstUtils',
327
+ '@jbrowse/core/util/nanoid',
328
+ '@jbrowse/core/util/numericUtils',
329
+ '@jbrowse/core/util/offscreenCanvasPonyfill',
330
+ '@jbrowse/core/util/openViews',
331
+ '@jbrowse/core/util/paintLayer',
332
+ '@jbrowse/core/util/parseLineByLine',
333
+ '@jbrowse/core/util/progress',
334
+ '@jbrowse/core/util/range',
335
+ '@jbrowse/core/util/renderToStaticMarkup',
336
+ '@jbrowse/core/util/resolveRowHeight',
337
+ '@jbrowse/core/util/rowStackGeometry',
93
338
  '@jbrowse/core/util/rxjs',
94
- // #reexport `FeatureDetails`, `BaseCard` and the other feature-detail building blocks
95
- '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail',
96
- // #reexport `BaseFeatureDataAdapter` and the adapter base classes
97
- '@jbrowse/core/data_adapters/BaseAdapter',
98
- // #reexport `getAdapter`, the worker-side adapter cache an RPC method resolves its adapter through
99
- '@jbrowse/core/data_adapters/dataAdapterCache',
339
+ '@jbrowse/core/util/sameStrings',
340
+ '@jbrowse/core/util/setStackTraceLimit',
341
+ '@jbrowse/core/util/simpleFeature',
342
+ '@jbrowse/core/util/starFusion',
343
+ '@jbrowse/core/util/stats',
344
+ '@jbrowse/core/util/SvgCanvas',
345
+ '@jbrowse/core/util/svgColorProps',
346
+ '@jbrowse/core/util/tabix',
347
+ '@jbrowse/core/util/thresholdScale',
348
+ '@jbrowse/core/util/tickLabels',
349
+ '@jbrowse/core/util/TimeTraveller',
350
+ '@jbrowse/core/util/tracks',
351
+ '@jbrowse/core/util/translateTranscript',
352
+ '@jbrowse/core/util/tss-react',
353
+ '@jbrowse/core/util/tss-react/types',
354
+ '@jbrowse/core/util/types',
355
+ '@jbrowse/core/util/types/data',
356
+ '@jbrowse/core/util/types/mst',
357
+ '@jbrowse/core/util/unknownSnapshotKeys',
358
+ '@jbrowse/core/util/unzip',
359
+ '@jbrowse/core/util/useEventCallback',
360
+ '@jbrowse/core/util/useFetch',
361
+ '@jbrowse/core/util/useFetchPlugins',
362
+ '@jbrowse/core/util/useMeasure',
363
+ '@jbrowse/core/util/usePanelVirtualScroll',
364
+ '@jbrowse/core/util/usePanZoom',
365
+ '@jbrowse/core/util/usePointerDrag',
366
+ '@jbrowse/core/util/useResizeDrag',
367
+ '@jbrowse/core/util/useRowVirtualScroll',
368
+ '@jbrowse/core/util/viewHighlights',
369
+ '@jbrowse/core/util/viewStatus',
370
+ '@jbrowse/core/util/virtualRange',
371
+ '@jbrowse/core/util/wheelZoom',
372
+ '@jbrowse/core/util/whenViewSettled',
373
+ '@jbrowse/core/util/withLaunchInput',
374
+ '@jbrowse/display-kit/BlockMsg',
375
+ '@jbrowse/display-kit/BottomRightIndicators',
376
+ '@jbrowse/display-kit/channelSpec',
377
+ '@jbrowse/display-kit/ChannelSpecDialog',
378
+ '@jbrowse/display-kit/ChromeHighlight',
379
+ '@jbrowse/display-kit/ChromeLegend',
380
+ '@jbrowse/display-kit/coarseTier',
381
+ '@jbrowse/display-kit/CoarseTierMixin',
382
+ '@jbrowse/display-kit/coarseTierPhase',
383
+ '@jbrowse/display-kit/colorConfigSchema',
384
+ '@jbrowse/display-kit/colorScale',
385
+ '@jbrowse/display-kit/ConfigProblemsIndicator',
386
+ '@jbrowse/display-kit/configSchema',
387
+ '@jbrowse/display-kit/const',
388
+ '@jbrowse/display-kit/ContextMenuMixin',
389
+ '@jbrowse/display-kit/densityTier',
390
+ '@jbrowse/display-kit/densityTierConfigSchemaFields',
391
+ '@jbrowse/display-kit/densityTierMenu',
392
+ '@jbrowse/display-kit/DensityTierMixin',
393
+ '@jbrowse/display-kit/displayAutoruns',
394
+ '@jbrowse/display-kit/DisplayBackgroundProgress',
395
+ '@jbrowse/display-kit/DisplayChrome',
396
+ '@jbrowse/display-kit/DisplayChromeBase',
397
+ '@jbrowse/display-kit/DisplayContextMenu',
398
+ '@jbrowse/display-kit/DisplayErrorBar',
399
+ '@jbrowse/display-kit/DisplayLoadingOverlay',
400
+ '@jbrowse/display-kit/DisplayRenderErrorOverlay',
401
+ '@jbrowse/display-kit/DisplayStatusChromeBase',
402
+ '@jbrowse/display-kit/facetConfigSchema',
403
+ '@jbrowse/display-kit/fetchEachRegion',
404
+ '@jbrowse/display-kit/fetchInputs',
405
+ '@jbrowse/display-kit/FetchMixin',
406
+ '@jbrowse/display-kit/foundationDisplayPhase',
407
+ '@jbrowse/display-kit/foundationPaintInert',
408
+ '@jbrowse/display-kit/foundationSvgReady',
409
+ '@jbrowse/display-kit/foundationView',
410
+ '@jbrowse/display-kit/GlobalFetchMixin',
411
+ '@jbrowse/display-kit/groupByMenu',
412
+ '@jbrowse/display-kit/GroupLabelBox',
413
+ '@jbrowse/display-kit/GroupLabelChips',
414
+ '@jbrowse/display-kit/groupLabelChipStyles',
415
+ '@jbrowse/display-kit/groupLabelStyle',
416
+ '@jbrowse/display-kit/heightMode',
417
+ '@jbrowse/display-kit/heightModeConfigSchemaFields',
418
+ '@jbrowse/display-kit/heightModeMenu',
419
+ '@jbrowse/display-kit/HeightModeMixin',
420
+ '@jbrowse/display-kit/HiddenGroupsMixin',
421
+ '@jbrowse/display-kit/highlightHost',
422
+ '@jbrowse/display-kit/installClearHoverOnViewportChange',
423
+ '@jbrowse/display-kit/installGlobalFetchAutorun',
424
+ '@jbrowse/display-kit/installPerRegionFetchAutoruns',
425
+ '@jbrowse/display-kit/jexlFilterConfigSchemaFields',
426
+ '@jbrowse/display-kit/KeyedFetchMixin',
427
+ '@jbrowse/display-kit/legendHost',
428
+ '@jbrowse/display-kit/LegendMixin',
429
+ '@jbrowse/display-kit/MultiRegionDisplayMixin',
430
+ '@jbrowse/display-kit/planRegionFetch',
431
+ '@jbrowse/display-kit/regionCommit',
432
+ '@jbrowse/display-kit/regionHost',
433
+ '@jbrowse/display-kit/regionTooLargeConfigSchemaFields',
434
+ '@jbrowse/display-kit/RegionTooLargeMixin',
435
+ '@jbrowse/display-kit/regionTooLargeUtils',
436
+ '@jbrowse/display-kit/renderDisplaySvg',
437
+ '@jbrowse/display-kit/rpcArgs',
438
+ '@jbrowse/display-kit/SkippedFeaturesIndicator',
439
+ '@jbrowse/display-kit/squashToHeightMenuItem',
440
+ '@jbrowse/display-kit/stableIdentityComputed',
441
+ '@jbrowse/display-kit/StoredHoverMixin',
442
+ '@jbrowse/display-kit/subPixelBinBp',
443
+ '@jbrowse/display-kit/TooLargeMessage',
444
+ '@jbrowse/display-kit/TrackControl',
445
+ '@jbrowse/display-kit/trackHeightConfigSchemaFields',
446
+ '@jbrowse/display-kit/TrackHeightIndicator',
447
+ '@jbrowse/display-kit/TrackHeightMixin',
448
+ '@jbrowse/display-kit/triangleTransform',
449
+ '@jbrowse/display-kit/triangleYScalar',
450
+ '@jbrowse/display-kit/types',
451
+ '@jbrowse/display-kit/viewportEmpty',
452
+ '@jbrowse/display-ui',
453
+ '@jbrowse/display-ui/axisPlacement',
454
+ '@jbrowse/display-ui/embed',
455
+ '@jbrowse/display-ui/yAxisConstants',
456
+ '@jbrowse/display-ui/yScaleTicks',
457
+ '@jbrowse/render-core/blockClipUtils',
458
+ '@jbrowse/render-core/canvas2dUtils',
459
+ '@jbrowse/render-core/canvasContext',
460
+ '@jbrowse/render-core/colorRampLut',
461
+ '@jbrowse/render-core/computePipeline',
462
+ '@jbrowse/render-core/contractReports',
463
+ '@jbrowse/render-core/coverageBand',
464
+ '@jbrowse/render-core/coverageBandBuffers',
465
+ '@jbrowse/render-core/createRenderingBackend',
466
+ '@jbrowse/render-core/displayPhase',
467
+ '@jbrowse/render-core/encodeMemo',
468
+ '@jbrowse/render-core/gpuDevice',
469
+ '@jbrowse/render-core/graphicsCapabilities',
470
+ '@jbrowse/render-core/hal',
471
+ '@jbrowse/render-core/installUpload',
472
+ '@jbrowse/render-core/instanceCache',
473
+ '@jbrowse/render-core/instancePass',
474
+ '@jbrowse/render-core/marks',
475
+ '@jbrowse/render-core/marks/backend',
476
+ '@jbrowse/render-core/marks/colorFill',
477
+ '@jbrowse/render-core/marks/drawAgainstHit',
478
+ '@jbrowse/render-core/marks/glyphPaint',
479
+ '@jbrowse/render-core/marks/hit',
480
+ '@jbrowse/render-core/namedReactions',
481
+ '@jbrowse/render-core/OverlayCanvas',
482
+ '@jbrowse/render-core/perRegionRenderingBackend',
483
+ '@jbrowse/render-core/regionDataMap',
484
+ '@jbrowse/render-core/renderBlock',
485
+ '@jbrowse/render-core/RenderCanvas',
486
+ '@jbrowse/render-core/renderingBackendBase',
487
+ '@jbrowse/render-core/RenderLifecycleMixin',
488
+ '@jbrowse/render-core/scoreScale',
489
+ '@jbrowse/render-core/ScrollLockedOverlay',
490
+ '@jbrowse/render-core/shaders/antialias',
491
+ '@jbrowse/render-core/shaders/barMarkIface',
492
+ '@jbrowse/render-core/shaders/capsule',
493
+ '@jbrowse/render-core/shaders/capsuleConsts',
494
+ '@jbrowse/render-core/shaders/coverageBar',
495
+ '@jbrowse/render-core/shaders/coverageIndicator',
496
+ '@jbrowse/render-core/shaders/coverageInterbase',
497
+ '@jbrowse/render-core/shaders/coverageMod',
498
+ '@jbrowse/render-core/shaders/coverageSnp',
499
+ '@jbrowse/render-core/shaders/hpmath',
500
+ '@jbrowse/render-core/shaders/pointGlyph',
501
+ '@jbrowse/render-core/shaders/pointGlyphConsts',
502
+ '@jbrowse/render-core/shaders/pointMark',
503
+ '@jbrowse/render-core/shaders/pointMarkConsts',
504
+ '@jbrowse/render-core/shaders/pointMarkIface',
505
+ '@jbrowse/render-core/shaders/rowRect',
506
+ '@jbrowse/render-core/shaders/rowRectConsts',
507
+ '@jbrowse/render-core/shaders/scoreScale',
508
+ '@jbrowse/render-core/shaders/spanMarkIface',
509
+ '@jbrowse/render-core/sharedBackendKey',
510
+ '@jbrowse/render-core/slangPass',
511
+ '@jbrowse/render-core/useGraphicsCapabilities',
512
+ '@jbrowse/render-core/useRenderingBackend',
513
+ '@jbrowse/render-core/useTabVisibilityRerender',
100
514
  ];
@@ -1,2 +1,2 @@
1
- declare const libs: any;
1
+ declare const libs: Record<string, unknown>;
2
2
  export default libs;