@jbrowse/core 5.0.0-beta.7 → 5.0.0-beta.9

package/esm/ReExports/BaseFeatureDetails.d.ts

@@ -1 +0,0 @@
-export declare const BaseFeatureDetail: any;

package/esm/ReExports/BaseFeatureDetails.js

@@ -1,10 +0,0 @@
-import { lazy } from 'react';
-import { lazyMap } from './lazify.js';
-export const BaseFeatureDetail = lazyMap({
-    Attributes: lazy(() => import('../BaseFeatureWidget/BaseFeatureDetail/Attributes.js')),
-    FeatureDetails: lazy(() => import('../BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js')),
-    FeatureWash: lazy(() => import('../BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js')),
-    BaseCard: lazy(() => import('../BaseFeatureWidget/BaseFeatureDetail/BaseCard.js')),
-    BaseAttributes: lazy(() => import('../BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js')),
-    BaseCoreDetails: lazy(() => import('../BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js')),
-});

package/esm/ReExports/barrelOnlyNames.d.ts

@@ -1,5 +0,0 @@
-export declare const BARREL_ONLY_NAMES: {
-    '@jbrowse/core/ui': never[];
-    '@jbrowse/core/util/tracks': never[];
-    '@jbrowse/core/util': string[];
-};

package/esm/ReExports/barrelOnlyNames.js

@@ -1,63 +0,0 @@
-// Names a source barrel exports that its ABI file deliberately does not serve.
-//
-// The public*.ts split stopped a barrel removal from silently narrowing the ABI
-// -- take a name out of ui/index.ts and publicUi.tsx no longer compiles. This
-// closes the other direction, which the split opened: a name *added* to a barrel
-// is not served until someone adds it here too, and an external plugin cannot
-// see that. Its `import { X } from '@jbrowse/core/ui'` type-checks, because
-// package.json's `./ui` resolves to the barrel, and reads undefined off
-// JBrowseExports at runtime -- the same shape of failure a removal used to
-// cause, just for new code instead of old.
-//
-// So publicSurface.test.ts requires barrel-minus-ABI to be exactly this list.
-// Adding an export to a barrel then fails until the ABI question is answered,
-// and either answer is one line: serve it from the public*.ts file, or name it
-// here. Nothing about being on this list is wrong -- most of these are helpers
-// for app code, session plumbing and in-tree hooks that a plugin has no use for.
-export const BARREL_ONLY_NAMES = {
-    '@jbrowse/core/ui': [],
-    '@jbrowse/core/util/tracks': [],
-    '@jbrowse/core/util': [
-        'MAX_GLOB_REGIONS',
-        'adapterNeedsAddTrackComponent',
-        'assembleLocStrings',
-        'canonicalizeViewRefName',
-        'clampToContig',
-        'clampToListedContig',
-        'containerDisplaysAssembly',
-        'downloadPhase',
-        'finishAddTrack',
-        'formatBytes',
-        'getDisplayStr',
-        'getLocationUri',
-        'handleFetchError',
-        'indexedDBAvailable',
-        'installablePlugins',
-        'isSessionWithMultipleViews',
-        'isSessionWithPermanentPlugins',
-        'isWebWorker',
-        'localStorageAvailable',
-        'localStorageGetStringArray',
-        'matchRefNames',
-        'measuredFont',
-        'namesTemporaryAssembly',
-        'notifyFeatureDetailsMiss',
-        'notifyLocalStorageKey',
-        'parseBpString',
-        'parseRegionNames',
-        'resolveNamedRegions',
-        'resolveStorePluginRefs',
-        'resolveStoreRefs',
-        'resolveUri',
-        'sessionStorageAvailable',
-        'sessionStorageGetItem',
-        'sessionStorageRemoveItem',
-        'sessionStorageSetItem',
-        'statusSource',
-        'subscribeToLocalStorageKey',
-        'throttleStatusEmits',
-        'useCreateOnce',
-        'useFinalUnmount',
-        'withFeatureDetails',
-    ],
-};

package/esm/ReExports/index.d.ts

@@ -1 +0,0 @@
-export { default } from './modules.ts';

package/esm/ReExports/index.js

@@ -1 +0,0 @@
-export { default } from './modules.js';

package/esm/ReExports/publicTracks.d.ts

@@ -1 +0,0 @@
-export { UNKNOWN, UNSUPPORTED, addAdapterGuesser, addTrackTypeGuesser, allSessionTracks, annotationTrackIds, canonicalAssemblyNames, clearFileFromCache, ensureFileHandleReady, expandLooseTrackConfig, findFileHandleIds, generateUnknownTrackConf, generateUnsupportedTrackConf, getBlob, getBlobMap, getConfAssemblyNames, getConfAssemblyNamesOrNone, getFileFromCache, getFileName, getRpcSessionId, getTrackAssemblyNames, getTrackName, guessAdapter, guessTabixIndex, guessTrackConf, guessTrackConfForLocation, guessTrackType, hasFileHandlesInCache, hideTrackGeneric, isLooseTrackConfig, isSameAssemblyName, launchToggleTrackGeneric, launchTrackGeneric, makeIndex, makeIndexType, normalizeTrackInit, openAssemblyInLinearView, openMateLabel, pickDisplayForView, restoreFileHandles, restoreFileHandlesFromSnapshot, setBlobMap, setFileInCache, showTrackGeneric, storeBlobLocation, storeFileHandleLocation, stripFileExtension, stripTrackIds, toggleTrackGeneric, viewCanDisplayTrack, viewDisplayNames, } from '../util/tracks.ts';

package/esm/ReExports/publicTracks.js

@@ -1,14 +0,0 @@
-// The published `@jbrowse/core/util/tracks` module, listed by name. Same split,
-// and the same reasons, as publicUtil.ts: serving `import * as trackUtils from
-// '../util/tracks.ts'` made the external ABI a side effect of an internal
-// module, so moving a helper out of tracks.ts silently edited what plugins get.
-// `getParentRenderProps` left that way -- deleted as dead in-tree code, which it
-// was, while published apollo called it on three display models.
-//
-// Unlike publicUi.tsx this one is served in the RPC worker too (sharedModules.ts),
-// so it stays React-free; sharedModules.purity.test.ts fails on the graph, not
-// on this list.
-//
-// So: adding a line is how a helper becomes public, and it is a decision rather
-// than a side effect of where the code happens to live.
-export { UNKNOWN, UNSUPPORTED, addAdapterGuesser, addTrackTypeGuesser, allSessionTracks, annotationTrackIds, canonicalAssemblyNames, clearFileFromCache, ensureFileHandleReady, expandLooseTrackConfig, findFileHandleIds, generateUnknownTrackConf, generateUnsupportedTrackConf, getBlob, getBlobMap, getConfAssemblyNames, getConfAssemblyNamesOrNone, getFileFromCache, getFileName, getRpcSessionId, getTrackAssemblyNames, getTrackName, guessAdapter, guessTabixIndex, guessTrackConf, guessTrackConfForLocation, guessTrackType, hasFileHandlesInCache, hideTrackGeneric, isLooseTrackConfig, isSameAssemblyName, launchToggleTrackGeneric, launchTrackGeneric, makeIndex, makeIndexType, normalizeTrackInit, openAssemblyInLinearView, openMateLabel, pickDisplayForView, restoreFileHandles, restoreFileHandlesFromSnapshot, setBlobMap, setFileInCache, showTrackGeneric, storeBlobLocation, storeFileHandleLocation, stripFileExtension, stripTrackIds, toggleTrackGeneric, viewCanDisplayTrack, viewDisplayNames, } from '../util/tracks.js';

package/esm/ReExports/publicUi.d.ts

@@ -1,4 +0,0 @@
-import type { ComponentProps } from 'react';
-declare const LazyBaseTooltip: import("react").LazyExoticComponent<typeof import("../ui/BaseTooltip.tsx").default>;
-export declare function BaseTooltip(props: ComponentProps<typeof LazyBaseTooltip>): import("react").JSX.Element;
-export { ActionLink, AssemblySelector, BaseExportSvgDialog, CONTEXT_MENU_Z_INDEX, CascadingMenu, CascadingMenuButton, ConfirmDialog, ContextMenu, CopyToClipboardButton, Crosshairs, Dialog, EditableTypography, ErrorBanner, ErrorBar, ErrorMessage, ErrorOverlay, ExportSvgDialog, ExternalLink, FatalErrorDialog, FileDropZone, FileSelector, GpuFallbackButton, INLINE_MENU_ROW_WIDTH, InfoDialog, JexlFilterDialog, LAUNCH_LABEL, LEGEND_ROW_HEIGHT, LEGEND_SVG_GUTTER_WIDTH, LEGEND_SWATCH, LabeledCheckbox, LegendSwatchGlyph, LoadingEllipses, LoadingOverlay, LoadingProgress, LogoFull, Logomark, MAX_LEGEND_ITEMS, Menu, MonospaceTextField, NumberTextField, PluggableComponent, PluggableComponents, PluggableElements, PrerenderedCanvas, ProgressChip, RefNameAutocomplete, RefNameAutocompleteEndAdornment, ReplaceCurrentViewButton, ResetToDefaultButton, ResizeHandle, SanitizedHTML, ScrollChrome, ScrollEdgeShadow, SettingsChangesTable, ShareLinkField, SingleSlider, SliderTooltip, StatusProgressBar, SubmitDialog, SubmitForm, SvgColorLegend, TOOLTIP_Z_INDEX, TagTextField, VIEW_HEADER_HEIGHT, VerticalScrollbar, ViewLoadingScreen, addExtensionElement, adornmentReservePx, checkboxItem, colorFwdStrand, colorInterchrom, colorLongInsert, colorLongreadInv, colorNeutralRead, colorPairLL, colorPairLR, colorPairLRDark, colorPairRL, colorPairRR, colorRevStrand, colorScaleIsEmpty, colorShortInsert, colorSplitReadInversion, colorSupplementary, colorUnmappedMate, colorUnmappedMateDark, createJBrowseBaseTheme, createJBrowseTheme, createJBrowseThemeFromArgs, defaultThemes, getInputWidth, hoverBoxStyle, launchTargetsMenuItem, legendEntries, legendIsReadable, legendSpecOf, legendSwatches, makeSizeMenu, makeSizeSubMenu, matchesTrackSelector, measureLegendText, methylated5hmC, methylated5mC, nonEmptyLegendSections, pushIntoSubMenu, pushLaunchViewMenuItem, radioItems, replaceViewAction, resolveSubMenu, sliderScale, staysOpenOnClick, tagColorPalette, unmethylated5mC, useAssemblySelection, useCopyToClipboard, useExportSvgPreference, useMouseState, useMouseTracking, useRecentLocations, wrapComponent, } from '../ui/index.ts';

package/esm/ReExports/publicUi.js

@@ -1,33 +0,0 @@
-import { jsx as _jsx } from "react/jsx-runtime";
-// The published `@jbrowse/core/ui` module, listed by name. Same split, and the
-// same reasons, as publicUtil.ts: an internal barrel and an external ABI want
-// opposite things, and serving `import * as coreUi from '../ui/index.ts'` made
-// the second a side effect of the first.
-//
-// That coupling has a second cost here that util does not have, and it is the
-// one that keeps biting: **removing a component from ui/index.ts is how this
-// codebase does lazy loading.** The barrel is imported by eagerly-evaluated
-// plugin entries, so a re-export of a heavy component holds it on the startup
-// path -- that is why BaseTooltip left (the line alone held ~266KB of
-// @floating-ui). With the ABI derived from the barrel, every such fix was also a
-// silent ABI removal. BaseTooltip's spent two releases missing from the served
-// namespace while apollo read it there.
-//
-// Splitting them makes those independent. Deleting an `export … from` line in
-// ui/index.ts now stops compiling here, so the ABI question is asked; and the
-// answer can be `lazy()`, since **this file may serve a component the barrel
-// does not export** -- see BaseTooltip below, which is exactly that. The eager
-// win and the plugin surface stop being the same edit.
-//
-// So: adding a line is how a component becomes public, and it is a decision
-// rather than a side effect of where the code happens to live.
-import { Suspense, lazy } from 'react';
-// Deliberately not re-exported by ui/index.ts -- see above. Served from its own
-// path too ('@jbrowse/core/ui/BaseTooltip', which published react-msaview uses),
-// and read off this namespace by published apollo; both spellings are this one
-// component, and neither puts @floating-ui on the startup path.
-const LazyBaseTooltip = lazy(() => import('../ui/BaseTooltip.js'));
-export function BaseTooltip(props) {
-    return (_jsx(Suspense, { fallback: null, children: _jsx(LazyBaseTooltip, { ...props }) }));
-}
-export { ActionLink, AssemblySelector, BaseExportSvgDialog, CONTEXT_MENU_Z_INDEX, CascadingMenu, CascadingMenuButton, ConfirmDialog, ContextMenu, CopyToClipboardButton, Crosshairs, Dialog, EditableTypography, ErrorBanner, ErrorBar, ErrorMessage, ErrorOverlay, ExportSvgDialog, ExternalLink, FatalErrorDialog, FileDropZone, FileSelector, GpuFallbackButton, INLINE_MENU_ROW_WIDTH, InfoDialog, JexlFilterDialog, LAUNCH_LABEL, LEGEND_ROW_HEIGHT, LEGEND_SVG_GUTTER_WIDTH, LEGEND_SWATCH, LabeledCheckbox, LegendSwatchGlyph, LoadingEllipses, LoadingOverlay, LoadingProgress, LogoFull, Logomark, MAX_LEGEND_ITEMS, Menu, MonospaceTextField, NumberTextField, PluggableComponent, PluggableComponents, PluggableElements, PrerenderedCanvas, ProgressChip, RefNameAutocomplete, RefNameAutocompleteEndAdornment, ReplaceCurrentViewButton, ResetToDefaultButton, ResizeHandle, SanitizedHTML, ScrollChrome, ScrollEdgeShadow, SettingsChangesTable, ShareLinkField, SingleSlider, SliderTooltip, StatusProgressBar, SubmitDialog, SubmitForm, SvgColorLegend, TOOLTIP_Z_INDEX, TagTextField, VIEW_HEADER_HEIGHT, VerticalScrollbar, ViewLoadingScreen, addExtensionElement, adornmentReservePx, checkboxItem, colorFwdStrand, colorInterchrom, colorLongInsert, colorLongreadInv, colorNeutralRead, colorPairLL, colorPairLR, colorPairLRDark, colorPairRL, colorPairRR, colorRevStrand, colorScaleIsEmpty, colorShortInsert, colorSplitReadInversion, colorSupplementary, colorUnmappedMate, colorUnmappedMateDark, createJBrowseBaseTheme, createJBrowseTheme, createJBrowseThemeFromArgs, defaultThemes, getInputWidth, hoverBoxStyle, launchTargetsMenuItem, legendEntries, legendIsReadable, legendSpecOf, legendSwatches, makeSizeMenu, makeSizeSubMenu, matchesTrackSelector, measureLegendText, methylated5hmC, methylated5mC, nonEmptyLegendSections, pushIntoSubMenu, pushLaunchViewMenuItem, radioItems, replaceViewAction, resolveSubMenu, sliderScale, staysOpenOnClick, tagColorPalette, unmethylated5mC, useAssemblySelection, useCopyToClipboard, useExportSvgPreference, useMouseState, useMouseTracking, useRecentLocations, wrapComponent, } from '../ui/index.js';

package/esm/ReExports/publicUtil.d.ts

@@ -1 +0,0 @@
-export { AuthNeededError, BEZIER_CONNECTOR_MAX_REACH_PX, ENCODED_PREFIX, IUPAC_MOTIF_REGEX, IntervalTree, JSON_PREFIX, MAX_ZOOM_RATE_PER_MS, SCROLL_ZOOM_FACTOR_DIVISOR, SHARE_PREFIX, SimpleFeature, UNKNOWN, UNSUPPORTED, UnknownRefNameError, ZOOM_ACTIVE_WINDOW_MS, accumulateScroll, adapterConfigFromSpec, addAdapterGuesser, addAddTrackComponent, addAndShowTrack, addOrReplaceView, addTrackFromWidget, addTrackTypeGuesser, aesDecrypt, aesEncrypt, animationAllowed, applyOrderWithin, applyZoomAccum, assembleLocString, assembleLocStringRaw, avg, b64PadSuffix, bezierConnectorPath, bpSpanPx, bpToPx, bytesForRegions, calculateRedispatchRange, canReplaceView, capitalizeFirst, checkStopToken, checkStopTokenThrottled, clamp, clearFileFromCache, cmpStr, coarseStripHTML, codonTable, compareLocStrings, compareLocs, complement, complementTable, createProgressReporter, createScrollLatch, createSharedSetup, createStatusChannel, createStatusFanOut, createStatusWindow, createStopToken, createStopTokenChecker, createStopTokenRotation, dedupe, defaultCodonTable, defaultStarts, diagonalizeRegions, diffTrackConfig, doesIntersect2, downloadStatus, drawImageOntoCanvasContext, encodeSessionParam, ensureFileHandleReady, expandLooseTrackConfig, featureSpanPx, fetchAndMaybeUnzip, fetchAndMaybeUnzipText, fetchJson, fileToLocation, findFileHandleIds, findParentThat, findParentThatIs, flattenTrackConfigDelta, formatRelativeTime, fromUrlSafeB64, gatherOverlaps, generateCodonTable, generateUnknownTrackConf, generateUnsupportedTrackConf, getAssemblyHost, getBlob, getBlobMap, getBpDisplayStr, getConfAssemblyNames, getContainingDisplay, getContainingTrack, getContainingView, getDialogHost, getEnv, launchOrReplaceView, getFileFromCache, getFileHandle, getFileName, getFillProps, getFrame, getNotificationSink, getNumberGrouping, getPaletteHost, getPluginUpdate, getRenderingServices, getRpcHost, getRpcSessionId, getSession, getSessionServices, getStr, getStrokeProps, getTickDisplayStr, getTrackAssemblyNames, getTrackName, getZoomNormalizer, groupBy, guessAdapter, guessTrackConf, guessTrackType, hasFileHandlesInCache, hasSharedArrayBuffer, hashCode, hideTrackGeneric, installedVersionFromUrl, intersection2, isAbortException, isAbstractMenuManager, isActivelyZooming, isAppRootModel, isAuthNeededException, isBlobLocation, isDataCurrent, isDisplayModel, isElectron, isFeature, isFileHandleLocation, isFileSystemAccessSupported, isGeneLikeType, isGzip, isLocalPathLocation, isLooseTrackConfig, isNode, isObject, isPalindromic, isPluginInstalled, isRootModelWithInternetAccounts, isRpcResult, isSelectionContainer, isSequenceMatchType, isSessionModel, isSessionServices, isSessionModelWithConfigEditing, isSessionModelWithConnectionEditing, isSessionModelWithConnections, isSessionModelWithWidgets, isSessionWithAddAssembly, isSessionWithAddSessionTrack, isSessionWithAddTracks, isSessionWithPublishTrackConf, isSessionWithDeleteTrackConf, isSessionWithSessionPlugins, isSessionWithSessionTracks, isSessionWithShareURL, isSessionWithViewReplacement, isStopToken, isStopped, isSupportedIndexingAdapter, isTrackModel, isTrackViewModel, isUriLocation, isValidTag, isViewContainer, isViewModel, iupacToRegex, linkify, locStringsToRegions, localStorageGetBoolean, localStorageGetItem, localStorageGetJSON, localStorageGetNumber, localStorageRemoveItem, localStorageSetBoolean, localStorageSetItem, localStorageSetJSON, localStorageSetNumber, makeAbortError, makeIndex, makeIndexType, makeTrackId, markStopTokenStopped, matchTrackId, max, maxFinite, measureGridWidth, measureText, mergeIntervals, mergeTrackConfig, min, minmax, normalizeWheelDelta, notEmpty, objectHash, openFeatureWidget, parseLocString, parseLocStringOneBased, parseMotifList, pluralize, polarToCartesian, progressLabel, rIC, radToDeg, readSessionFromDynamo, reducePrecision, registerStopTokenBroadcaster, renameRegionIfNeeded, renameRegionsIfNeeded, reorder, reorderWithin, resolvePlugin, resolveSelectedIds, restoreFileHandles, restoreFileHandlesFromSnapshot, revcom, reverse, reverseComplementIupac, revlist, saveAs, scheduleDetachedDestroy, saveSvgAsImage, selectNamedRegions, setBlobMap, setFileInCache, setNumberGrouping, sha256, sha256Base64, sha256Base64Url, shareEndpoint, shorten, shorten2, showTrackGeneric, springAnimate, statusFraction, statusMessageText, statusProgressLabel, statusReading, stitch, stopStopToken, stopTokenSignal, storeBlobLocation, storeFileHandle, storeFileHandleLocation, stringify, stripAlpha, stripFileExtension, stripTrackIds, sum, svgHtmlToPngBlob, tagRegex, testAdapter, toBase64, toBase64Url, toLocale, toUrlSafeB64, toggleTrackGeneric, truncateMiddle, updateStatus, useDebounce, useLocalStorage, useWidthSetter, verifyPermission, wheelFrameElapsedMs, wheelZoomAccum, withProgress, withStopTokenCheck, withStopTokenSignal, } from '../util/index.ts';

package/esm/ReExports/publicUtil.js

@@ -1,32 +0,0 @@
-// The published `@jbrowse/core/util` module, listed by name.
-//
-// modules.ts used to serve `import * as coreUtil from '../util/index.ts'`, which
-// made the external ABI a side effect of an internal barrel. The two want
-// opposite things: in-tree code wants util/ reorganized freely, and a published
-// plugin wants the names it linked against to still be there. Coupling them
-// meant moving a file inside util/ silently edited the ABI, and nothing in the
-// diff said so -- that is how `defaultCodonTable`, `iterMap`, `when` and the
-// rest went, each one an `undefined` inside a bundle nobody was going to build
-// again.
-//
-// Re-exporting by name from the barrel splits those jobs without freezing
-// anything. Moving code between modules under util/ is still free, since only
-// the barrel's own line changes. Taking a name *out* of the barrel stops
-// compiling here, and the fix -- deleting the line below -- is an ABI removal
-// that reads as one in review.
-//
-// So: adding a line is how a helper becomes public, and it is a decision rather
-// than a side effect of where the code happens to live. This list is the ABI,
-// which abiBaseline.json is deliberately not: that baseline fails on removals
-// but not additions, so it sat 11 names behind what was actually being served
-// by the time this was written. A list that has to be edited by hand cannot
-// drift that way.
-//
-// '@jbrowse/core/ui' (publicUi.tsx, 128) and '@jbrowse/core/util/tracks'
-// (publicTracks.ts, 51) are split the same way now, and each had already lost a
-// name to the coupling: BaseTooltip and getParentRenderProps. publicUi.tsx also
-// carries the part this file has no use for -- an ABI file may serve a component
-// its barrel does not export, behind lazy(). That is what makes "take it out of
-// the barrel so it leaves the startup path" a different edit from "stop serving
-// it to plugins", which here they were not.
-export { AuthNeededError, BEZIER_CONNECTOR_MAX_REACH_PX, ENCODED_PREFIX, IUPAC_MOTIF_REGEX, IntervalTree, JSON_PREFIX, MAX_ZOOM_RATE_PER_MS, SCROLL_ZOOM_FACTOR_DIVISOR, SHARE_PREFIX, SimpleFeature, UNKNOWN, UNSUPPORTED, UnknownRefNameError, ZOOM_ACTIVE_WINDOW_MS, accumulateScroll, adapterConfigFromSpec, addAdapterGuesser, addAddTrackComponent, addAndShowTrack, addOrReplaceView, addTrackFromWidget, addTrackTypeGuesser, aesDecrypt, aesEncrypt, animationAllowed, applyOrderWithin, applyZoomAccum, assembleLocString, assembleLocStringRaw, avg, b64PadSuffix, bezierConnectorPath, bpSpanPx, bpToPx, bytesForRegions, calculateRedispatchRange, canReplaceView, capitalizeFirst, checkStopToken, checkStopTokenThrottled, clamp, clearFileFromCache, cmpStr, coarseStripHTML, codonTable, compareLocStrings, compareLocs, complement, complementTable, createProgressReporter, createScrollLatch, createSharedSetup, createStatusChannel, createStatusFanOut, createStatusWindow, createStopToken, createStopTokenChecker, createStopTokenRotation, dedupe, defaultCodonTable, defaultStarts, diagonalizeRegions, diffTrackConfig, doesIntersect2, downloadStatus, drawImageOntoCanvasContext, encodeSessionParam, ensureFileHandleReady, expandLooseTrackConfig, featureSpanPx, fetchAndMaybeUnzip, fetchAndMaybeUnzipText, fetchJson, fileToLocation, findFileHandleIds, findParentThat, findParentThatIs, flattenTrackConfigDelta, formatRelativeTime, fromUrlSafeB64, gatherOverlaps, generateCodonTable, generateUnknownTrackConf, generateUnsupportedTrackConf, getAssemblyHost, getBlob, getBlobMap, getBpDisplayStr, getConfAssemblyNames, getContainingDisplay, getContainingTrack, getContainingView, getDialogHost, getEnv, launchOrReplaceView, getFileFromCache, getFileHandle, getFileName, getFillProps, getFrame, getNotificationSink, getNumberGrouping, getPaletteHost, getPluginUpdate, getRenderingServices, getRpcHost, getRpcSessionId, getSession, getSessionServices, getStr, getStrokeProps, getTickDisplayStr, getTrackAssemblyNames, getTrackName, getZoomNormalizer, groupBy, guessAdapter, guessTrackConf, guessTrackType, hasFileHandlesInCache, hasSharedArrayBuffer, hashCode, hideTrackGeneric, installedVersionFromUrl, intersection2, isAbortException, isAbstractMenuManager, isActivelyZooming, isAppRootModel, isAuthNeededException, isBlobLocation, isDataCurrent, isDisplayModel, isElectron, isFeature, isFileHandleLocation, isFileSystemAccessSupported, isGeneLikeType, isGzip, isLocalPathLocation, isLooseTrackConfig, isNode, isObject, isPalindromic, isPluginInstalled, isRootModelWithInternetAccounts, isRpcResult, isSelectionContainer, isSequenceMatchType, isSessionModel, isSessionServices, isSessionModelWithConfigEditing, isSessionModelWithConnectionEditing, isSessionModelWithConnections, isSessionModelWithWidgets, isSessionWithAddAssembly, isSessionWithAddSessionTrack, isSessionWithAddTracks, isSessionWithPublishTrackConf, isSessionWithDeleteTrackConf, isSessionWithSessionPlugins, isSessionWithSessionTracks, isSessionWithShareURL, isSessionWithViewReplacement, isStopToken, isStopped, isSupportedIndexingAdapter, isTrackModel, isTrackViewModel, isUriLocation, isValidTag, isViewContainer, isViewModel, iupacToRegex, linkify, locStringsToRegions, localStorageGetBoolean, localStorageGetItem, localStorageGetJSON, localStorageGetNumber, localStorageRemoveItem, localStorageSetBoolean, localStorageSetItem, localStorageSetJSON, localStorageSetNumber, makeAbortError, makeIndex, makeIndexType, makeTrackId, markStopTokenStopped, matchTrackId, max, maxFinite, measureGridWidth, measureText, mergeIntervals, mergeTrackConfig, min, minmax, normalizeWheelDelta, notEmpty, objectHash, openFeatureWidget, parseLocString, parseLocStringOneBased, parseMotifList, pluralize, polarToCartesian, progressLabel, rIC, radToDeg, readSessionFromDynamo, reducePrecision, registerStopTokenBroadcaster, renameRegionIfNeeded, renameRegionsIfNeeded, reorder, reorderWithin, resolvePlugin, resolveSelectedIds, restoreFileHandles, restoreFileHandlesFromSnapshot, revcom, reverse, reverseComplementIupac, revlist, saveAs, scheduleDetachedDestroy, saveSvgAsImage, selectNamedRegions, setBlobMap, setFileInCache, setNumberGrouping, sha256, sha256Base64, sha256Base64Url, shareEndpoint, shorten, shorten2, showTrackGeneric, springAnimate, statusFraction, statusMessageText, statusProgressLabel, statusReading, stitch, stopStopToken, stopTokenSignal, storeBlobLocation, storeFileHandle, storeFileHandleLocation, stringify, stripAlpha, stripFileExtension, stripTrackIds, sum, svgHtmlToPngBlob, tagRegex, testAdapter, toBase64, toBase64Url, toLocale, toUrlSafeB64, toggleTrackGeneric, truncateMiddle, updateStatus, useDebounce, useLocalStorage, useWidthSetter, verifyPermission, wheelFrameElapsedMs, wheelZoomAccum, withProgress, withStopTokenCheck, withStopTokenSignal, } from '../util/index.js';

package/esm/ReExports/sharedModules.d.ts

@@ -1,96 +0,0 @@
-import * as React from 'react';
-import * as mst from '@jbrowse/mobx-state-tree';
-import * as mobx from 'mobx';
-import * as ReactJSXRuntime from 'react/jsx-runtime';
-import Plugin from '../Plugin.ts';
-import * as Configuration from '../configuration/index.ts';
-import * as BaseAdapterExports from '../data_adapters/BaseAdapter/index.ts';
-import * as dataAdapterCache from '../data_adapters/dataAdapterCache.ts';
-import AdapterType from '../pluggableElementTypes/AdapterType.ts';
-import DisplayType from '../pluggableElementTypes/DisplayType.ts';
-import TrackType from '../pluggableElementTypes/TrackType.ts';
-import ViewType from '../pluggableElementTypes/ViewType.ts';
-import WidgetType from '../pluggableElementTypes/WidgetType.ts';
-import * as pluggableElementTypes from '../pluggableElementTypes/index.ts';
-import * as pluggableElementTypeModels from '../pluggableElementTypes/models/index.ts';
-import * as corePalette from '../ui/palette.ts';
-import * as coreTheme from '../ui/theme.ts';
-import * as coreColor from '../util/color/index.ts';
-import * as coreIo from '../util/io/index.ts';
-import * as coreLayouts from '../util/layouts/index.ts';
-import * as coreMstReflection from '../util/mst-reflection.ts';
-import * as rxjs from '../util/rxjs.ts';
-import * as mstTypes from '../util/types/mst.ts';
-import * as trackUtils from './publicTracks.ts';
-import * as coreUtil from './publicUtil.ts';
-export declare const sharedModules: {
-    mobx: typeof mobx;
-    '@jbrowse/mobx-state-tree': typeof mst;
-    'mobx-state-tree': typeof mst;
-    react: typeof React;
-    'react/jsx-runtime': typeof ReactJSXRuntime;
-    '@jbrowse/core/Plugin': typeof Plugin;
-    '@jbrowse/core/configuration': typeof Configuration;
-    '@jbrowse/core/util/types/mst': typeof mstTypes;
-    '@jbrowse/core/ui/theme': typeof coreTheme;
-    '@jbrowse/core/ui/palette': typeof corePalette;
-    '@jbrowse/core/util': typeof coreUtil;
-    '@jbrowse/core/util/color': typeof coreColor;
-    '@jbrowse/core/util/layouts': typeof coreLayouts;
-    '@jbrowse/core/util/tracks': typeof trackUtils;
-    '@jbrowse/core/util/Base1DViewModel': mst.IModelType<{
-        id: mst.IOptionalIType<mst.ISimpleType<string>, [undefined]>;
-        displayedRegions: mst.IOptionalIType<mst.IType<import("../util/index.ts").Region[], import("../util/index.ts").Region[], import("../util/index.ts").Region[]>, [undefined]>;
-        bpPerPx: mst.IType<number | undefined, number, number>;
-        offsetPx: mst.IType<number | undefined, number, number>;
-        minimumBlockWidth: mst.IOptionalIType<mst.ISimpleType<number>, [undefined]>;
-    }, {
-        volatileWidth: number;
-    } & {
-        setDisplayedRegions(regions: import("../util/index.ts").Region[]): void;
-        setBpPerPx(val: number): void;
-        setVolatileWidth(width: number): void;
-    } & {
-        readonly width: number;
-        readonly minBpPerPx: number;
-        readonly maxBpPerPx: number;
-        readonly assemblyNames: string[];
-        readonly displayedRegionsTotalPx: number;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly totalBp: number;
-    } & {
-        readonly dynamicBlocks: import("../util/blockTypes.ts").BlockSet;
-        readonly staticBlocks: import("../util/blockTypes.ts").BlockSet;
-        readonly currBp: number;
-    } & {
-        pxToBp(px: number): import("../util/Base1DUtils.ts").PxToBpResult;
-        bpToPx(args: {
-            refName: string;
-            coord: number;
-            displayedRegionIndex?: number;
-        }): number | undefined;
-    } & {
-        showAllRegions(): void;
-        zoomOut(): void;
-        zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: any): number;
-        scrollTo(offsetPx: number): number;
-        centerAt(coord: number, refName: string | undefined, displayedRegionIndex: number): void;
-        scroll(distance: number): number;
-    } & {
-        moveTo(start?: import("../util/Base1DUtils.ts").BpOffset, end?: import("../util/Base1DUtils.ts").BpOffset): void;
-    }, mst._NotCustomized, mst._NotCustomized>;
-    '@jbrowse/core/util/io': typeof coreIo;
-    '@jbrowse/core/util/mst-reflection': typeof coreMstReflection;
-    '@jbrowse/core/util/rxjs': typeof rxjs;
-    '@jbrowse/core/pluggableElementTypes': typeof pluggableElementTypes;
-    '@jbrowse/core/pluggableElementTypes/ViewType': typeof ViewType;
-    '@jbrowse/core/pluggableElementTypes/AdapterType': typeof AdapterType;
-    '@jbrowse/core/pluggableElementTypes/DisplayType': typeof DisplayType;
-    '@jbrowse/core/pluggableElementTypes/TrackType': typeof TrackType;
-    '@jbrowse/core/pluggableElementTypes/WidgetType': typeof WidgetType;
-    '@jbrowse/core/pluggableElementTypes/models': typeof pluggableElementTypeModels;
-    '@jbrowse/core/data_adapters/BaseAdapter': typeof BaseAdapterExports;
-    '@jbrowse/core/data_adapters/dataAdapterCache': typeof dataAdapterCache;
-};

package/esm/ReExports/sharedModules.js

@@ -1,66 +0,0 @@
-// eslint-disable-next-line no-restricted-imports
-import * as React from 'react';
-import * as mst from '@jbrowse/mobx-state-tree';
-import * as mobx from 'mobx';
-import * as ReactJSXRuntime from 'react/jsx-runtime';
-import Plugin from '../Plugin.js';
-import * as Configuration from '../configuration/index.js';
-import * as BaseAdapterExports from '../data_adapters/BaseAdapter/index.js';
-import * as dataAdapterCache from '../data_adapters/dataAdapterCache.js';
-import AdapterType from '../pluggableElementTypes/AdapterType.js';
-import DisplayType from '../pluggableElementTypes/DisplayType.js';
-import TrackType from '../pluggableElementTypes/TrackType.js';
-import ViewType from '../pluggableElementTypes/ViewType.js';
-import WidgetType from '../pluggableElementTypes/WidgetType.js';
-import * as pluggableElementTypes from '../pluggableElementTypes/index.js';
-import * as pluggableElementTypeModels from '../pluggableElementTypes/models/index.js';
-import * as corePalette from '../ui/palette.js';
-import * as coreTheme from '../ui/theme.js';
-import Base1DView from '../util/Base1DViewModel.js';
-import * as coreColor from '../util/color/index.js';
-import * as coreIo from '../util/io/index.js';
-import * as coreLayouts from '../util/layouts/index.js';
-import * as coreMstReflection from '../util/mst-reflection.js';
-import * as rxjs from '../util/rxjs.js';
-import * as mstTypes from '../util/types/mst.js';
-import * as trackUtils from './publicTracks.js';
-import * as coreUtil from './publicUtil.js';
-// The part of the runtime plugin ABI that is not UI: what a plugin evaluated in
-// the RPC worker can actually use. modules.ts adds the UI on top of it for the
-// main thread; workerModules.ts fills the same keys with a stub instead.
-export const sharedModules = {
-    mobx,
-    '@jbrowse/mobx-state-tree': mst,
-    'mobx-state-tree': mst,
-    react: React,
-    'react/jsx-runtime': ReactJSXRuntime,
-    '@jbrowse/core/Plugin': Plugin,
-    '@jbrowse/core/configuration': Configuration,
-    '@jbrowse/core/util/types/mst': mstTypes,
-    '@jbrowse/core/ui/theme': coreTheme,
-    '@jbrowse/core/ui/palette': corePalette,
-    '@jbrowse/core/util': coreUtil,
-    '@jbrowse/core/util/color': coreColor,
-    '@jbrowse/core/util/layouts': coreLayouts,
-    '@jbrowse/core/util/tracks': trackUtils,
-    '@jbrowse/core/util/Base1DViewModel': Base1DView,
-    '@jbrowse/core/util/io': coreIo,
-    '@jbrowse/core/util/mst-reflection': coreMstReflection,
-    '@jbrowse/core/util/rxjs': rxjs,
-    '@jbrowse/core/pluggableElementTypes': pluggableElementTypes,
-    '@jbrowse/core/pluggableElementTypes/ViewType': ViewType,
-    '@jbrowse/core/pluggableElementTypes/AdapterType': AdapterType,
-    '@jbrowse/core/pluggableElementTypes/DisplayType': DisplayType,
-    '@jbrowse/core/pluggableElementTypes/TrackType': TrackType,
-    '@jbrowse/core/pluggableElementTypes/WidgetType': WidgetType,
-    '@jbrowse/core/pluggableElementTypes/models': pluggableElementTypeModels,
-    '@jbrowse/core/data_adapters/BaseAdapter': BaseAdapterExports,
-    // `adapterCache` is module-level state, so a plugin that bundles its own copy
-    // of this file gets a second cache in the RPC worker — and
-    // `freeAdapterResources`, which CoreFreeResources calls on the host's copy
-    // when the last track using an adapter config closes, never sees it. The
-    // cache is the only strong reference to an adapter, so those adapters and
-    // everything they hold live as long as the worker. Serving the module is what
-    // makes an external RPC method share the host's cache.
-    '@jbrowse/core/data_adapters/dataAdapterCache': dataAdapterCache,
-};

package/esm/ReExports/workerNamespaceNames.d.ts

@@ -1,11 +0,0 @@
-export declare const REACT_DOM_NAMES: string[];
-export declare const REACT_DOM_CLIENT_NAMES: string[];
-export declare const MOBX_REACT_NAMES: string[];
-export declare const MUI_UTILS_NAMES: string[];
-export declare const MUI_STYLES_NAMES: string[];
-export declare const TSS_REACT_NAMES: string[];
-export declare const MATERIAL_UI_LAB_NAMES: string[];
-export declare const MUI_MATERIAL_NAMES: string[];
-export declare const MATERIAL_UI_CORE_NAMES: string[];
-export declare const CORE_UI_NAMES: string[];
-export declare const WORKER_NAMESPACE_NAMES: Record<string, readonly string[]>;