@jbrowse/core 5.0.0-beta.7 → 5.0.0-beta.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (379) hide show
  1. package/README.md +427 -130
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +3 -2
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +5 -3
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +3 -5
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +8 -9
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +8 -13
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +2 -1
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +3 -3
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.d.ts +8 -0
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldActionsButton.js +24 -0
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +5 -3
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +1 -0
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +1 -4
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.d.ts +16 -0
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/jexlFilterActions.js +53 -0
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +0 -8
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +0 -16
  19. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +7 -34
  20. package/esm/BaseFeatureWidget/configSchema.d.ts +1 -1
  21. package/esm/BaseFeatureWidget/formatDetails.d.ts +13 -29
  22. package/esm/BaseFeatureWidget/formatDetails.js +46 -79
  23. package/esm/BaseFeatureWidget/index.d.ts +1 -0
  24. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +35 -28
  25. package/esm/BaseFeatureWidget/stateModelFactory.js +94 -102
  26. package/esm/BaseFeatureWidget/types.d.ts +3 -0
  27. package/esm/BaseFeatureWidget/util.d.ts +0 -3
  28. package/esm/BaseFeatureWidget/util.js +0 -17
  29. package/esm/PluginLoader.d.ts +14 -9
  30. package/esm/PluginLoader.js +34 -26
  31. package/esm/PluginManager.d.ts +4 -4
  32. package/esm/PluginManager.js +1 -1
  33. package/esm/ReExports/coreModules.generated.d.ts +2 -0
  34. package/esm/ReExports/coreModules.generated.js +492 -0
  35. package/esm/ReExports/coreWorkerModules.generated.d.ts +2 -0
  36. package/esm/ReExports/coreWorkerModules.generated.js +453 -0
  37. package/esm/ReExports/frameworkModules.d.ts +2 -0
  38. package/esm/ReExports/frameworkModules.js +67 -0
  39. package/esm/ReExports/frameworkShared.d.ts +12 -0
  40. package/esm/ReExports/frameworkShared.js +16 -0
  41. package/esm/ReExports/frameworkWorkerModules.generated.d.ts +2 -0
  42. package/esm/ReExports/frameworkWorkerModules.generated.js +130 -0
  43. package/esm/ReExports/list.js +493 -79
  44. package/esm/ReExports/modules.d.ts +1 -1
  45. package/esm/ReExports/modules.js +10 -87
  46. package/esm/ReExports/registry.d.ts +1 -0
  47. package/esm/ReExports/registry.js +23 -5
  48. package/esm/ReExports/uiStub.d.ts +2 -1
  49. package/esm/ReExports/uiStub.js +24 -2
  50. package/esm/ReExports/workerModules.js +8 -12
  51. package/esm/TextSearch/TextSearchManager.d.ts +3 -12
  52. package/esm/TextSearch/TextSearchManager.js +22 -10
  53. package/esm/assemblyManager/assembly.d.ts +10 -14
  54. package/esm/assemblyManager/assembly.js +10 -14
  55. package/esm/assemblyManager/assemblyConfigSchema.d.ts +23 -81
  56. package/esm/assemblyManager/assemblyManager.d.ts +10 -16
  57. package/esm/assemblyManager/assemblyManager.js +7 -10
  58. package/esm/assemblyManager/loadRefNameMap.js +3 -3
  59. package/esm/configuration/configurationSchema.d.ts +75 -31
  60. package/esm/configuration/configurationSchema.js +74 -40
  61. package/esm/configuration/configurationSchemaUnion.d.ts +39 -0
  62. package/esm/configuration/configurationSchemaUnion.js +59 -0
  63. package/esm/configuration/configurationSlot.d.ts +37 -12
  64. package/esm/configuration/configurationSlot.js +83 -22
  65. package/esm/configuration/formatAboutConfigSchema.d.ts +7 -21
  66. package/esm/configuration/formatDetailsConfigSchema.d.ts +11 -37
  67. package/esm/configuration/formatDetailsConfigSchema.js +10 -13
  68. package/esm/configuration/getConf.d.ts +17 -9
  69. package/esm/configuration/getConf.js +52 -7
  70. package/esm/configuration/index.d.ts +11 -4
  71. package/esm/configuration/index.js +7 -4
  72. package/esm/configuration/mergeFormatCallbacks.d.ts +6 -7
  73. package/esm/configuration/mergeFormatCallbacks.js +13 -10
  74. package/esm/configuration/readConfObject.d.ts +2 -22
  75. package/esm/configuration/readConfObject.js +15 -49
  76. package/esm/configuration/requirements.d.ts +37 -0
  77. package/esm/configuration/requirements.js +88 -0
  78. package/esm/configuration/schemaRegistry.d.ts +21 -1
  79. package/esm/configuration/schemaRegistry.js +11 -0
  80. package/esm/configuration/schemaTypes.d.ts +3 -0
  81. package/esm/configuration/schemaTypes.js +10 -0
  82. package/esm/configuration/slotFacade.d.ts +35 -4
  83. package/esm/configuration/slotFacade.js +96 -9
  84. package/esm/configuration/snapshotPreprocess.d.ts +27 -0
  85. package/esm/configuration/snapshotPreprocess.js +102 -0
  86. package/esm/configuration/types.d.ts +161 -22
  87. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +2 -2
  88. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +11 -2
  89. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +12 -1
  90. package/esm/data_adapters/BaseAdapter/featureDensity.d.ts +2 -3
  91. package/esm/data_adapters/BaseAdapter/featureDensity.js +2 -3
  92. package/esm/data_adapters/BaseAdapter/index.d.ts +22 -3
  93. package/esm/data_adapters/BaseAdapter/types.d.ts +3 -4
  94. package/esm/data_adapters/BaseAdapter/zoomRange.d.ts +10 -0
  95. package/esm/data_adapters/BaseAdapter/zoomRange.js +1 -0
  96. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +9 -11
  97. package/esm/data_adapters/getSequenceSubAdapter.d.ts +1 -3
  98. package/esm/data_adapters/getSequenceSubAdapter.js +1 -3
  99. package/esm/pluggableElementTypes/AdapterType.d.ts +7 -7
  100. package/esm/pluggableElementTypes/RpcMethodType.d.ts +1 -1
  101. package/esm/pluggableElementTypes/RpcMethodType.js +3 -8
  102. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +1 -2
  103. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +7 -7
  104. package/esm/pluggableElementTypes/index.d.ts +1 -1
  105. package/esm/pluggableElementTypes/index.js +1 -1
  106. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +17 -7
  107. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +45 -48
  108. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +40 -36
  109. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +10 -13
  110. package/esm/pluggableElementTypes/models/BaseTrackModel.js +6 -6
  111. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +37 -17
  112. package/esm/pluggableElementTypes/models/BaseViewModel.js +25 -10
  113. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +26 -16
  114. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +1 -1
  115. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -18
  116. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +5 -5
  117. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +26 -31
  118. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +57 -141
  119. package/esm/pluggableElementTypes/models/baseTrackConfig.js +22 -26
  120. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +2 -2
  121. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +3 -4
  122. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +3 -3
  123. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +15 -7
  124. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +38 -29
  125. package/esm/pluggableElementTypes/models/index.d.ts +1 -2
  126. package/esm/pluggableElementTypes/models/index.js +1 -2
  127. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +3 -3
  128. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +4 -4
  129. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +3 -3
  130. package/esm/rpc/BaseRpcDriver.d.ts +1 -2
  131. package/esm/rpc/BaseRpcDriver.js +23 -30
  132. package/esm/rpc/MainThreadRpcDriver.d.ts +2 -2
  133. package/esm/rpc/MainThreadRpcDriver.js +13 -8
  134. package/esm/rpc/RpcClient.d.ts +17 -6
  135. package/esm/rpc/RpcClient.js +42 -12
  136. package/esm/rpc/RpcManager.d.ts +8 -10
  137. package/esm/rpc/RpcManager.js +1 -1
  138. package/esm/rpc/RpcRegistry.d.ts +8 -2
  139. package/esm/rpc/RpcServer.d.ts +3 -1
  140. package/esm/rpc/RpcServer.js +19 -12
  141. package/esm/rpc/WebWorkerRpcDriver.d.ts +3 -3
  142. package/esm/rpc/WebWorkerRpcDriver.js +9 -47
  143. package/esm/rpc/byteBudget.d.ts +3 -5
  144. package/esm/rpc/byteBudget.js +4 -4
  145. package/esm/rpc/configSchema.d.ts +7 -21
  146. package/esm/rpc/coreRpcMethods.d.ts +1 -0
  147. package/esm/rpc/coreRpcMethods.js +1 -0
  148. package/esm/rpc/methods/CoreEncodeFeatures.d.ts +6 -5
  149. package/esm/rpc/methods/CoreEncodeFeatures.js +26 -31
  150. package/esm/rpc/methods/CoreGetEncodedFeature.d.ts +13 -0
  151. package/esm/rpc/methods/CoreGetEncodedFeature.js +31 -0
  152. package/esm/rpc/methods/CoreGetExportData.js +2 -2
  153. package/esm/rpc/methods/CoreGetFeatureDensity.js +2 -2
  154. package/esm/rpc/methods/CoreGetFeatures.js +2 -2
  155. package/esm/rpc/methods/CoreGetSequence.js +2 -2
  156. package/esm/rpc/methods/layerFeatures.d.ts +26 -0
  157. package/esm/rpc/methods/layerFeatures.js +40 -0
  158. package/esm/svg/SvgExport.js +3 -4
  159. package/esm/svg/SvgThemeProviders.d.ts +12 -0
  160. package/esm/svg/SvgThemeProviders.js +15 -0
  161. package/esm/svg/exportViewSvg.d.ts +32 -0
  162. package/esm/svg/exportViewSvg.js +13 -0
  163. package/esm/svg/normalizeSvgMarkup.d.ts +7 -0
  164. package/esm/svg/normalizeSvgMarkup.js +99 -0
  165. package/esm/svg/serializeSvg.d.ts +7 -0
  166. package/esm/svg/serializeSvg.js +11 -0
  167. package/esm/svg/svgReady.d.ts +8 -7
  168. package/esm/svg/svgReady.js +8 -7
  169. package/esm/svg/trackNames.d.ts +5 -5
  170. package/esm/svg/trackNames.js +6 -6
  171. package/esm/svg/wrapSvgExport.js +6 -74
  172. package/esm/ui/CascadingMenu.js +83 -86
  173. package/esm/ui/ErrorMessageStackTraceDialog.js +0 -5
  174. package/esm/ui/FileSelector/useInternetAccounts.d.ts +156 -96
  175. package/esm/ui/HoverMenu.d.ts +1 -2
  176. package/esm/ui/HoverMenu.js +6 -3
  177. package/esm/ui/JexlFilterDialog.d.ts +13 -10
  178. package/esm/ui/JexlFilterDialog.js +122 -49
  179. package/esm/ui/JexlFilterRowEditors.d.ts +15 -0
  180. package/esm/ui/JexlFilterRowEditors.js +90 -0
  181. package/esm/ui/LazyBaseTooltip.d.ts +4 -0
  182. package/esm/ui/LazyBaseTooltip.js +9 -0
  183. package/esm/ui/LoadingOverlay.js +3 -1
  184. package/esm/ui/MonospaceTextField.d.ts +2 -1
  185. package/esm/ui/MonospaceTextField.js +21 -19
  186. package/esm/ui/PaletteContext.d.ts +7 -9
  187. package/esm/ui/PaletteContext.js +24 -10
  188. package/esm/ui/RefNameAutocomplete/index.d.ts +1 -2
  189. package/esm/ui/RefNameAutocomplete/index.js +1 -1
  190. package/esm/ui/ScrollChrome.d.ts +6 -9
  191. package/esm/ui/ScrollChrome.js +5 -6
  192. package/esm/ui/ScrollEdgeShadow.d.ts +6 -9
  193. package/esm/ui/ScrollEdgeShadow.js +9 -24
  194. package/esm/ui/SettingsChangesTable.js +3 -3
  195. package/esm/ui/VerticalScrollbar.d.ts +13 -34
  196. package/esm/ui/VerticalScrollbar.js +29 -83
  197. package/esm/ui/ViewLoadingScreen.d.ts +2 -2
  198. package/esm/ui/ViewLoadingScreen.js +3 -3
  199. package/esm/ui/colorScale.d.ts +26 -1
  200. package/esm/ui/colorScale.js +28 -5
  201. package/esm/ui/colors.d.ts +49 -1
  202. package/esm/ui/colors.js +139 -4
  203. package/esm/ui/hoverBoxStyle.d.ts +14 -2
  204. package/esm/ui/hoverBoxStyle.js +17 -2
  205. package/esm/ui/index.d.ts +5 -3
  206. package/esm/ui/index.js +9 -7
  207. package/esm/ui/launchViewMenu.js +3 -3
  208. package/esm/ui/legendSpec.d.ts +2 -0
  209. package/esm/ui/legendSpec.js +3 -0
  210. package/esm/ui/palette.d.ts +0 -1
  211. package/esm/ui/palette.js +3 -27
  212. package/esm/ui/replaceViewAction.d.ts +1 -1
  213. package/esm/ui/replaceViewAction.js +1 -1
  214. package/esm/ui/theme.d.ts +1 -1
  215. package/esm/ui/theme.js +6 -40
  216. package/esm/ui/viewHeaderHeight.d.ts +1 -0
  217. package/esm/ui/viewHeaderHeight.js +1 -0
  218. package/esm/util/Base1DUtils.d.ts +1 -1
  219. package/esm/util/Base1DUtils.js +2 -2
  220. package/esm/util/SvgCanvas.d.ts +15 -13
  221. package/esm/util/SvgCanvas.js +72 -53
  222. package/esm/util/aborting.d.ts +39 -0
  223. package/esm/util/aborting.js +84 -0
  224. package/esm/util/adapterMetadata.d.ts +1 -1
  225. package/esm/util/adapterMetadata.js +6 -6
  226. package/esm/util/addAndShowTrack.d.ts +1 -4
  227. package/esm/util/addRelativeUris.d.ts +10 -2
  228. package/esm/util/addRelativeUris.js +22 -7
  229. package/esm/util/addTrackFromWidget.d.ts +2 -5
  230. package/esm/util/animationAllowed.d.ts +9 -0
  231. package/esm/util/animationAllowed.js +13 -0
  232. package/esm/util/applyRowResizeWheel.d.ts +10 -5
  233. package/esm/util/applyRowResizeWheel.js +10 -21
  234. package/esm/util/bandLayout.d.ts +4 -4
  235. package/esm/util/bandLayout.js +4 -4
  236. package/esm/util/bezierConnector.js +5 -4
  237. package/esm/util/bgzfWorkerPool.d.ts +20 -74
  238. package/esm/util/bgzfWorkerPool.js +20 -74
  239. package/esm/util/cachedSetup.d.ts +1 -1
  240. package/esm/util/cachedSetup.js +2 -2
  241. package/esm/util/categoricalField.d.ts +37 -0
  242. package/esm/util/categoricalField.js +52 -0
  243. package/esm/util/color/cssColorsLevel4.d.ts +1 -0
  244. package/esm/util/color/cssColorsLevel4.js +1 -0
  245. package/esm/util/color/index.d.ts +5 -3
  246. package/esm/util/color/index.js +7 -4
  247. package/esm/util/colorBits.d.ts +1 -2
  248. package/esm/util/colorBits.js +17 -39
  249. package/esm/util/colorRamp.d.ts +27 -1
  250. package/esm/util/colorRamp.js +56 -2
  251. package/esm/util/colorSchemes.d.ts +9 -0
  252. package/esm/util/colorSchemes.js +7 -0
  253. package/esm/util/{createStopTokenRotation.d.ts → createAbortRotation.d.ts} +11 -14
  254. package/esm/util/{createStopTokenRotation.js → createAbortRotation.js} +14 -26
  255. package/esm/util/cssColorParse.d.ts +15 -0
  256. package/esm/util/cssColorParse.js +53 -0
  257. package/esm/util/diagonalizeRegions.d.ts +2 -3
  258. package/esm/util/diagonalizeRegions.js +7 -12
  259. package/esm/util/expandLooseSearchIndex.d.ts +7 -0
  260. package/esm/util/expandLooseSearchIndex.js +25 -0
  261. package/esm/util/featureTransforms.d.ts +30 -3
  262. package/esm/util/featureTransforms.js +233 -36
  263. package/esm/util/fetchAndMaybeUnzip.js +5 -6
  264. package/esm/util/fetchContext.d.ts +5 -6
  265. package/esm/util/fetchContext.js +1 -1
  266. package/esm/util/fetchHub.d.ts +3 -1
  267. package/esm/util/fetchHub.js +2 -2
  268. package/esm/util/fetchSeq.d.ts +2 -3
  269. package/esm/util/fetchSeq.js +2 -2
  270. package/esm/util/fieldReader.d.ts +17 -0
  271. package/esm/util/fieldReader.js +62 -0
  272. package/esm/util/groupKeys.d.ts +75 -0
  273. package/esm/util/groupKeys.js +152 -0
  274. package/esm/util/highlights.d.ts +6 -4
  275. package/esm/util/highlights.js +12 -25
  276. package/esm/util/hooks.d.ts +1 -2
  277. package/esm/util/hooks.js +1 -2
  278. package/esm/util/index.d.ts +3 -3
  279. package/esm/util/index.js +4 -3
  280. package/esm/util/indexCandidates.js +1 -1
  281. package/esm/util/installFetch.d.ts +13 -10
  282. package/esm/util/installFetch.js +11 -10
  283. package/esm/util/installPrerequisiteFetch.d.ts +5 -3
  284. package/esm/util/installPrerequisiteFetch.js +3 -4
  285. package/esm/util/io/index.js +12 -12
  286. package/esm/util/isDataCurrent.d.ts +7 -5
  287. package/esm/util/isDataCurrent.js +9 -6
  288. package/esm/util/jexl.js +24 -21
  289. package/esm/util/jexlFilterRows.d.ts +89 -0
  290. package/esm/util/jexlFilterRows.js +252 -0
  291. package/esm/util/jexlFilters.d.ts +7 -5
  292. package/esm/util/jexlStrings.d.ts +3 -4
  293. package/esm/util/jexlStrings.js +2 -3
  294. package/esm/util/legendCandidates.d.ts +31 -27
  295. package/esm/util/legendCandidates.js +79 -53
  296. package/esm/util/localStorage.js +4 -4
  297. package/esm/util/markEncoding.d.ts +32 -16
  298. package/esm/util/markEncoding.js +177 -150
  299. package/esm/util/markEncodingTypes.d.ts +137 -66
  300. package/esm/util/mstUtils.d.ts +19 -22
  301. package/esm/util/mstUtils.js +19 -22
  302. package/esm/util/numericUtils.d.ts +7 -0
  303. package/esm/util/numericUtils.js +16 -0
  304. package/esm/util/numericValue.d.ts +14 -0
  305. package/esm/util/numericValue.js +34 -0
  306. package/esm/util/openFeatureWidget.js +1 -2
  307. package/esm/util/openViews.d.ts +1 -0
  308. package/esm/util/openViews.js +3 -3
  309. package/esm/util/parseLineByLine.d.ts +3 -4
  310. package/esm/util/parseLineByLine.js +7 -13
  311. package/esm/util/progress.d.ts +21 -21
  312. package/esm/util/progress.js +27 -26
  313. package/esm/util/renameRegions.d.ts +1 -2
  314. package/esm/util/renderToStaticMarkup.js +16 -16
  315. package/esm/util/rxjs.d.ts +7 -8
  316. package/esm/util/rxjs.js +12 -15
  317. package/esm/util/simpleFeature.d.ts +0 -1
  318. package/esm/util/svgColorProps.d.ts +11 -0
  319. package/esm/util/svgColorProps.js +28 -1
  320. package/esm/util/tabix.d.ts +3 -4
  321. package/esm/util/tabix.js +6 -7
  322. package/esm/util/thresholdScale.d.ts +54 -0
  323. package/esm/util/thresholdScale.js +112 -0
  324. package/esm/util/timeGate.d.ts +4 -5
  325. package/esm/util/timeGate.js +4 -5
  326. package/esm/util/trackConfigDelta.d.ts +22 -18
  327. package/esm/util/trackConfigDelta.js +40 -38
  328. package/esm/util/tracks.d.ts +27 -4
  329. package/esm/util/tracks.js +116 -43
  330. package/esm/util/translateTranscript.d.ts +44 -0
  331. package/esm/util/translateTranscript.js +102 -0
  332. package/esm/util/types/index.d.ts +19 -7
  333. package/esm/util/types/services.d.ts +1 -1
  334. package/esm/util/unknownSnapshotKeys.d.ts +15 -0
  335. package/esm/util/unknownSnapshotKeys.js +13 -0
  336. package/esm/util/useFeatureSequence.js +4 -4
  337. package/esm/util/useFetch.d.ts +3 -4
  338. package/esm/util/useFetch.js +5 -6
  339. package/esm/util/usePanelVirtualScroll.d.ts +7 -39
  340. package/esm/util/usePanelVirtualScroll.js +9 -40
  341. package/esm/util/useRowVirtualScroll.d.ts +6 -29
  342. package/esm/util/useRowVirtualScroll.js +8 -49
  343. package/esm/util/useVirtualScrollWheel.d.ts +20 -4
  344. package/esm/util/useVirtualScrollWheel.js +40 -84
  345. package/esm/util/viewHighlights.d.ts +3 -0
  346. package/esm/util/viewHighlights.js +5 -0
  347. package/esm/util/viewStatus.d.ts +24 -15
  348. package/esm/util/viewStatus.js +17 -0
  349. package/esm/util/withLaunchInput.d.ts +1 -1
  350. package/esm/util/withLaunchInput.js +0 -4
  351. package/package.json +26 -12
  352. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +0 -80
  353. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.js +0 -583
  354. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +0 -141
  355. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.js +0 -1116
  356. package/esm/ReExports/BaseFeatureDetails.d.ts +0 -1
  357. package/esm/ReExports/BaseFeatureDetails.js +0 -10
  358. package/esm/ReExports/barrelOnlyNames.d.ts +0 -5
  359. package/esm/ReExports/barrelOnlyNames.js +0 -63
  360. package/esm/ReExports/index.d.ts +0 -1
  361. package/esm/ReExports/index.js +0 -1
  362. package/esm/ReExports/publicTracks.d.ts +0 -1
  363. package/esm/ReExports/publicTracks.js +0 -14
  364. package/esm/ReExports/publicUi.d.ts +0 -4
  365. package/esm/ReExports/publicUi.js +0 -33
  366. package/esm/ReExports/publicUtil.d.ts +0 -1
  367. package/esm/ReExports/publicUtil.js +0 -32
  368. package/esm/ReExports/sharedModules.d.ts +0 -96
  369. package/esm/ReExports/sharedModules.js +0 -66
  370. package/esm/ReExports/workerNamespaceNames.d.ts +0 -11
  371. package/esm/ReExports/workerNamespaceNames.js +0 -275
  372. package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +0 -51
  373. package/esm/pluggableElementTypes/models/HighlightsMixin.js +0 -78
  374. package/esm/ui/highlightChipReveal.d.ts +0 -32
  375. package/esm/ui/highlightChipReveal.js +0 -39
  376. package/esm/util/adapterConfigKey.d.ts +0 -12
  377. package/esm/util/adapterConfigKey.js +0 -14
  378. package/esm/util/stopToken.d.ts +0 -212
  379. package/esm/util/stopToken.js +0 -438
@@ -0,0 +1,453 @@
1
+ // Generated by scripts/generateReExports.ts — do not edit by hand.
2
+ // The @jbrowse/core half of the runtime ABI in the RPC worker: every key the main thread serves, a rendering module stubbed.
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+ // Regenerate with `pnpm autogen`.
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+ import { uiNamespace, uiStub } from './uiStub.js';
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+ import * as m0 from '../assemblyManager/index.js';
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+ import * as m1 from '../assemblyManager/assembly.js';
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+ import * as m2 from '../assemblyManager/assemblyConfigSchema.js';
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+ import * as m3 from '../BaseFeatureWidget/index.js';
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+ import * as m8 from '../BaseFeatureWidget/BaseFeatureDetail/Formatter.js';
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+ import * as m11 from '../checkPlugins.js';
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+ import * as m12 from '../configuration/index.js';
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+ import * as m13 from '../configuration/configurationSchema.js';
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+ import * as m14 from '../data_adapters/adapterSessionRefcount.js';
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+ import * as m15 from '../data_adapters/BaseAdapter/index.js';
15
+ import * as m16 from '../data_adapters/BaseAdapter/getAdapterId.js';
16
+ import * as m17 from '../data_adapters/BaseAdapter/stats.js';
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+ import * as m18 from '../data_adapters/BaseAdapter/types.js';
18
+ import * as m19 from '../data_adapters/BaseAdapter/zoomRange.js';
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+ import * as m20 from '../data_adapters/dataAdapterCache.js';
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+ import * as m21 from '../data_adapters/getFeatureAdapter.js';
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+ import * as m22 from '../data_adapters/getSequenceSubAdapter.js';
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+ import * as m23 from '../pluggableElementTypes/index.js';
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+ import * as m24 from '../pluggableElementTypes/AdapterType.js';
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+ import * as m25 from '../pluggableElementTypes/ConnectionType.js';
25
+ import * as m26 from '../pluggableElementTypes/DisplayType.js';
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+ import * as m27 from '../pluggableElementTypes/InternetAccountType.js';
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+ import * as m28 from '../pluggableElementTypes/models/index.js';
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+ import * as m29 from '../pluggableElementTypes/models/assertDisplayContract.js';
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+ import * as m30 from '../pluggableElementTypes/models/baseConnectionConfig.js';
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+ import * as m31 from '../pluggableElementTypes/models/BaseViewModel.js';
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+ import * as m32 from '../pluggableElementTypes/renderers/util/serializableFilterChain.js';
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+ import * as m33 from '../pluggableElementTypes/RpcMethodType.js';
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+ import * as m34 from '../pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js';
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+ import * as m35 from '../pluggableElementTypes/RpcMethodTypeWithRenameRegion.js';
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+ import * as m36 from '../pluggableElementTypes/RpcMethodTypeWithRenameRegions.js';
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+ import * as m37 from '../pluggableElementTypes/TextSearchAdapterType.js';
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+ import * as m38 from '../pluggableElementTypes/TrackType.js';
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+ import * as m39 from '../pluggableElementTypes/ViewType.js';
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+ import * as m40 from '../pluggableElementTypes/WidgetType.js';
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+ import * as m41 from '../Plugin.js';
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+ import * as m42 from '../pluginDefinitions.js';
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+ import * as m43 from '../PluginLoader.js';
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+ import * as m44 from '../PluginManager.js';
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+ import * as m45 from '../rpc/byteBudget.js';
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+ import * as m46 from '../rpc/RpcManager.js';
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+ import * as m47 from '../rpc/RpcRegistry.js';
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+ import * as m48 from '../rpc/WebWorkerRpcDriver.js';
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+ import * as m49 from '../svg/constants.js';
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+ import * as m50 from '../svg/exportViewSvg.js';
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+ import * as m51 from '../svg/saveSvgAsImage.js';
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+ import * as m54 from '../svg/svgId.js';
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+ import * as m55 from '../svg/svgReady.js';
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+ import * as m57 from '../svg/trackNames.js';
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+ import * as m59 from '../TextSearch/BaseResults.js';
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+ import * as m60 from '../TextSearch/TextSearchManager.js';
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+ import * as m64 from '../ui/AppLogo.js';
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+ import * as m66 from '../ui/buildExtraTrackMenuItems.js';
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+ import * as m69 from '../ui/colors.js';
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+ import * as m70 from '../ui/colorScale.js';
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+ import * as m72 from '../ui/DataGridFlexContainer.js';
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+ import * as m78 from '../ui/ErrorBoundary.js';
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+ import * as m81 from '../ui/filterMenuItems.js';
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+ import * as m82 from '../ui/gpuFallback.js';
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+ import * as m84 from '../ui/hoverBoxStyle.js';
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+ import * as m89 from '../ui/legendSpec.js';
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+ import * as m90 from '../ui/LegendSwatchGlyph.js';
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+ import * as m93 from '../ui/Logo.js';
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+ import * as m94 from '../ui/measureLegendText.js';
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+ import * as m96 from '../ui/menuItems.js';
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+ import * as m97 from '../ui/multiTrackMenuItems.js';
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+ import * as m98 from '../ui/palette.js';
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+ import * as m99 from '../ui/PaletteContext.js';
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+ import * as m100 from '../ui/persistentScrollbarStyle.js';
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+ import * as m101 from '../ui/PluggableComponents.js';
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+ import * as m105 from '../ui/ResizeHandle.js';
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+ import * as m107 from '../ui/SanitizedHTML.js';
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+ import * as m108 from '../ui/scrollZoomLabels.js';
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+ import * as m111 from '../ui/showSubMenu.js';
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+ import * as m112 from '../ui/Snackbar.js';
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+ import * as m113 from '../ui/SnackbarModel.js';
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+ import * as m115 from '../ui/styleTheme.js';
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+ import * as m116 from '../ui/SvgColorLegend.js';
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+ import * as m117 from '../ui/theme.js';
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+ import * as m118 from '../ui/useCoalescedPointer.js';
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+ import * as m119 from '../ui/useMouseTracking.js';
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+ import * as m120 from '../ui/VerticalScrollbar.js';
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+ import * as m121 from '../ui/zIndexes.js';
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+ import * as m122 from '../util/index.js';
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+ import * as m123 from '../util/aborting.js';
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+ import * as m124 from '../util/adapterMetadata.js';
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+ import * as m125 from '../util/addRelativeUris.js';
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+ import * as m126 from '../util/analytics.js';
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+ import * as m127 from '../util/animationAllowed.js';
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+ import * as m128 from '../util/assemblyConfigUtils.js';
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+ import * as m129 from '../util/bandHeight.js';
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+ import * as m130 from '../util/bandLayout.js';
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+ import * as m131 from '../util/Base1DUtils.js';
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+ import * as m132 from '../util/Base1DViewModel.js';
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+ import * as m133 from '../util/bgzfWorkerPool.js';
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+ import * as m134 from '../util/blockTypes.js';
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+ import * as m135 from '../util/cacheBudgets.js';
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+ import * as m136 from '../util/calculateDynamicBlocks.js';
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+ import * as m137 from '../util/calculateStaticBlocks.js';
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+ import * as m138 from '../util/categoricalField.js';
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+ import * as m139 from '../util/chooseGridPitch.js';
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+ import * as m140 from '../util/color/index.js';
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+ import * as m141 from '../util/colorBits.js';
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+ import * as m142 from '../util/colord.js';
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+ import * as m143 from '../util/colorRamp.js';
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+ import * as m144 from '../util/colorSchemes.js';
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+ import * as m145 from '../util/convertCodingSequenceToPeptides.js';
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+ import * as m146 from '../util/copyText.js';
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+ import * as m147 from '../util/createAbortRotation.js';
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+ import * as m148 from '../util/createSvgRasterCanvas.js';
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+ import * as m149 from '../util/deepEqual.js';
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+ import * as m150 from '../util/deepMerge.js';
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+ import * as m151 from '../util/diagonalizeRegions.js';
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+ import * as m152 from '../util/eventPoint.js';
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+ import * as m153 from '../util/expandLooseSearchIndex.js';
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+ import * as m154 from '../util/featureTransforms.js';
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+ import * as m155 from '../util/fetchContext.js';
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+ import * as m156 from '../util/fetchHub.js';
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+ import * as m157 from '../util/fetchPhases.js';
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+ import * as m158 from '../util/fieldReader.js';
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+ import * as m159 from '../util/fileHandleStore.js';
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+ import * as m160 from '../util/FileSaver/index.js';
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+ import * as m161 from '../util/flatbush/index.js';
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+ import * as m162 from '../util/formatFastaStrings.js';
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+ import * as m163 from '../util/frameCoalescer.js';
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+ import * as m164 from '../util/freezeDeep.js';
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+ import * as m165 from '../util/geneticCodes.js';
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+ import * as m166 from '../util/getRelativeX.js';
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+ import * as m167 from '../util/glyphNames.js';
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+ import * as m168 from '../util/groupKeys.js';
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+ import * as m169 from '../util/highlights.js';
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+ import * as m170 from '../util/hooks.js';
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+ import * as m171 from '../util/htmlText.js';
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+ import * as m172 from '../util/indexCandidates.js';
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+ import * as m173 from '../util/installClearHoverOnSurfaceMove.js';
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+ import * as m174 from '../util/installFetch.js';
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+ import * as m175 from '../util/installInitAutorun.js';
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+ import * as m176 from '../util/installPrerequisiteFetch.js';
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+ import * as m177 from '../util/io/index.js';
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+ import * as m178 from '../util/io/RemoteFileWithRangeCache.js';
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+ import * as m179 from '../util/isDataCurrent.js';
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+ import * as m180 from '../util/jexl.js';
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+ import * as m181 from '../util/jexlFilters.js';
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+ import * as m182 from '../util/jexlStrings.js';
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+ import * as m183 from '../util/layouts/index.js';
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+ import * as m184 from '../util/layouts/GranularRectLayout.js';
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+ import * as m185 from '../util/layouts/placeRect.js';
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+ import * as m186 from '../util/lazyAfterAttach.js';
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+ import * as m187 from '../util/leadingEdgeAutorun.js';
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+ import * as m188 from '../util/legendCandidates.js';
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+ import * as m189 from '../util/librpc.js';
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+ import * as m190 from '../util/localStorage.js';
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+ import * as m191 from '../util/makeAssembly.js';
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+ import * as m192 from '../util/markEncoding.js';
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+ import * as m193 from '../util/measureText.js';
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+ import * as m194 from '../util/mst-reflection.js';
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+ import * as m195 from '../util/mstUtils.js';
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+ import * as m196 from '../util/nanoid.js';
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+ import * as m197 from '../util/numericUtils.js';
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+ import * as m198 from '../util/offscreenCanvasPonyfill.js';
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+ import * as m199 from '../util/openViews.js';
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+ import * as m200 from '../util/paintLayer.js';
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+ import * as m201 from '../util/parseLineByLine.js';
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+ import * as m202 from '../util/progress.js';
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+ import * as m203 from '../util/range.js';
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+ import * as m205 from '../util/resolveRowHeight.js';
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+ import * as m206 from '../util/rowStackGeometry.js';
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+ import * as m207 from '../util/rxjs.js';
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+ import * as m208 from '../util/sameStrings.js';
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+ import * as m209 from '../util/setStackTraceLimit.js';
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+ import * as m210 from '../util/simpleFeature.js';
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+ import * as m211 from '../util/starFusion.js';
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+ import * as m212 from '../util/stats.js';
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+ import * as m213 from '../util/SvgCanvas.js';
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+ import * as m214 from '../util/svgColorProps.js';
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+ import * as m215 from '../util/tabix.js';
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+ import * as m216 from '../util/thresholdScale.js';
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+ import * as m217 from '../util/tickLabels.js';
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+ import * as m218 from '../util/TimeTraveller.js';
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+ import * as m219 from '../util/tracks.js';
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+ import * as m220 from '../util/translateTranscript.js';
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+ import * as m221 from '../util/tss-react/index.js';
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+ import * as m222 from '../util/tss-react/types.js';
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+ import * as m223 from '../util/types/index.js';
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+ import * as m224 from '../util/types/data.js';
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+ import * as m225 from '../util/types/mst.js';
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+ import * as m226 from '../util/unknownSnapshotKeys.js';
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+ import * as m227 from '../util/unzip.js';
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+ import * as m228 from '../util/useEventCallback.js';
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+ import * as m229 from '../util/useFetch.js';
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+ import * as m230 from '../util/useFetchPlugins.js';
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+ import * as m231 from '../util/useMeasure.js';
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+ import * as m232 from '../util/usePanelVirtualScroll.js';
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+ import * as m233 from '../util/usePanZoom.js';
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+ import * as m234 from '../util/usePointerDrag.js';
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+ import * as m235 from '../util/useResizeDrag.js';
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+ import * as m236 from '../util/useRowVirtualScroll.js';
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+ import * as m237 from '../util/viewHighlights.js';
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+ import * as m238 from '../util/viewStatus.js';
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+ import * as m239 from '../util/virtualRange.js';
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+ import * as m240 from '../util/wheelZoom.js';
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+ import * as m241 from '../util/whenViewSettled.js';
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+ import * as m242 from '../util/withLaunchInput.js';
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+ const libs = {
209
+ '@jbrowse/core/assemblyManager': { ...m0, __esModule: true },
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+ '@jbrowse/core/assemblyManager/assembly': { ...m1, __esModule: true },
211
+ '@jbrowse/core/assemblyManager/assemblyConfigSchema': { ...m2, __esModule: true },
212
+ '@jbrowse/core/BaseFeatureWidget': m3,
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+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail': uiNamespace(['BaseAttributes', 'BaseCard', 'BaseCoreDetails', 'FeatureDetails', 'FeatureWash', 'default', 'filterByValueItems', 'jexlFilterDisplay'], true),
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+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Attributes': uiStub,
215
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/BaseCard': uiStub,
216
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails': uiStub,
217
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/Formatter': m8.default,
218
+ '@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail/SimpleField': uiStub,
219
+ '@jbrowse/core/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog': uiStub,
220
+ '@jbrowse/core/checkPlugins': m11,
221
+ '@jbrowse/core/configuration': m12,
222
+ '@jbrowse/core/configuration/configurationSchema': m13,
223
+ '@jbrowse/core/data_adapters/adapterSessionRefcount': m14,
224
+ '@jbrowse/core/data_adapters/BaseAdapter': m15,
225
+ '@jbrowse/core/data_adapters/BaseAdapter/getAdapterId': m16,
226
+ '@jbrowse/core/data_adapters/BaseAdapter/stats': m17,
227
+ '@jbrowse/core/data_adapters/BaseAdapter/types': m18,
228
+ '@jbrowse/core/data_adapters/BaseAdapter/zoomRange': m19,
229
+ '@jbrowse/core/data_adapters/dataAdapterCache': m20,
230
+ '@jbrowse/core/data_adapters/getFeatureAdapter': m21,
231
+ '@jbrowse/core/data_adapters/getSequenceSubAdapter': m22,
232
+ '@jbrowse/core/pluggableElementTypes': m23,
233
+ '@jbrowse/core/pluggableElementTypes/AdapterType': m24.default,
234
+ '@jbrowse/core/pluggableElementTypes/ConnectionType': m25.default,
235
+ '@jbrowse/core/pluggableElementTypes/DisplayType': m26.default,
236
+ '@jbrowse/core/pluggableElementTypes/InternetAccountType': m27.default,
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+ '@jbrowse/core/pluggableElementTypes/models': m28,
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+ '@jbrowse/core/pluggableElementTypes/models/assertDisplayContract': m29,
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+ '@jbrowse/core/pluggableElementTypes/models/baseConnectionConfig': m30.default,
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+ '@jbrowse/core/pluggableElementTypes/models/BaseViewModel': { ...m31, __esModule: true },
241
+ '@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain': m32.default,
242
+ '@jbrowse/core/pluggableElementTypes/RpcMethodType': { ...m33, __esModule: true },
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+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions': m34.default,
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+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegion': m35.default,
245
+ '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithRenameRegions': m36.default,
246
+ '@jbrowse/core/pluggableElementTypes/TextSearchAdapterType': m37.default,
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+ '@jbrowse/core/pluggableElementTypes/TrackType': m38.default,
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+ '@jbrowse/core/pluggableElementTypes/ViewType': m39.default,
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+ '@jbrowse/core/pluggableElementTypes/WidgetType': m40.default,
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+ '@jbrowse/core/Plugin': m41.default,
251
+ '@jbrowse/core/pluginDefinitions': m42,
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+ '@jbrowse/core/PluginLoader': { ...m43, __esModule: true },
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+ '@jbrowse/core/PluginManager': { ...m44, __esModule: true },
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+ '@jbrowse/core/rpc/byteBudget': m45,
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+ '@jbrowse/core/rpc/RpcManager': m46.default,
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+ '@jbrowse/core/rpc/RpcRegistry': m47,
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+ '@jbrowse/core/rpc/WebWorkerRpcDriver': m48.default,
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+ '@jbrowse/core/svg/constants': m49,
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+ '@jbrowse/core/svg/exportViewSvg': m50,
260
+ '@jbrowse/core/svg/saveSvgAsImage': m51,
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+ '@jbrowse/core/svg/serializeSvg': uiNamespace(['normalizeSvgMarkup', 'serializeSvg']),
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+ '@jbrowse/core/svg/SvgExport': uiNamespace(['SVGBackground', 'SVGExportRoot', 'SVGMessageBox', 'SvgChrome', 'SvgClipRect']),
263
+ '@jbrowse/core/svg/svgId': m54,
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+ '@jbrowse/core/svg/svgReady': m55,
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+ '@jbrowse/core/svg/SvgThemeProviders': uiNamespace(['SvgThemeProviders']),
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+ '@jbrowse/core/svg/trackNames': m57,
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+ '@jbrowse/core/svg/wrapSvgExport': uiNamespace(['wrapSvgExport']),
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+ '@jbrowse/core/TextSearch/BaseResults': { ...m59, __esModule: true },
269
+ '@jbrowse/core/TextSearch/TextSearchManager': m60.default,
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+ '@jbrowse/core/ui': uiNamespace(['ActionLink', 'AssemblySelector', 'BaseExportSvgDialog', 'BaseTooltip', 'CONTEXT_MENU_Z_INDEX', 'CascadingMenu', 'CascadingMenuButton', 'ConfirmDialog', 'ContextMenu', 'CopyToClipboardButton', 'Crosshairs', 'Dialog', 'EditableTypography', 'ErrorBanner', 'ErrorBar', 'ErrorMessage', 'ErrorOverlay', 'ExportSvgDialog', 'ExternalLink', 'FatalErrorDialog', 'FileDropZone', 'FileSelector', 'GpuFallbackButton', 'INLINE_MENU_ROW_WIDTH', 'InfoDialog', 'JexlFilterDialog', 'LAUNCH_LABEL', 'LEGEND_ROW_HEIGHT', 'LEGEND_SVG_GUTTER_WIDTH', 'LEGEND_SWATCH', 'LabeledCheckbox', 'LegendSwatchGlyph', 'LoadingEllipses', 'LoadingOverlay', 'LoadingProgress', 'LogoFull', 'Logomark', 'MAX_LEGEND_ITEMS', 'Menu', 'MonospaceTextField', 'NumberTextField', 'PluggableComponent', 'PluggableComponents', 'PluggableElements', 'PrerenderedCanvas', 'ProgressChip', 'RefNameAutocomplete', 'RefNameAutocompleteEndAdornment', 'ReplaceCurrentViewButton', 'ResetToDefaultButton', 'ResizeHandle', 'SanitizedHTML', 'ScrollChrome', 'ScrollEdgeShadow', 'SettingsChangesTable', 'ShareLinkField', 'SingleSlider', 'SliderTooltip', 'StatusProgressBar', 'SubmitDialog', 'SubmitForm', 'SvgColorLegend', 'TOOLTIP_Z_INDEX', 'TagTextField', 'VIEW_HEADER_HEIGHT', 'VerticalScrollbar', 'ViewLoadingScreen', 'addExtensionElement', 'adornmentReservePx', 'checkboxItem', 'colorFwdStrand', 'colorInterchrom', 'colorLongInsert', 'colorLongreadInv', 'colorPairLL', 'colorPairLR', 'colorPairLRDark', 'colorPairRL', 'colorPairRR', 'colorRevStrand', 'colorScaleIsEmpty', 'colorShortInsert', 'colorSplitReadInversion', 'colorSupplementary', 'colorUnmappedMate', 'colorUnmappedMateDark', 'createJBrowseBaseTheme', 'createJBrowseTheme', 'createJBrowseThemeFromArgs', 'defaultThemes', 'getInputWidth', 'hoverBoxStyle', 'launchTargetsMenuItem', 'legendEntries', 'legendIsReadable', 'legendSpecOf', 'legendSwatches', 'makeSizeMenu', 'makeSizeSubMenu', 'matchesTrackSelector', 'measureLegendText', 'methylated5hmC', 'methylated5mC', 'nonEmptyLegendSections', 'pushIntoSubMenu', 'pushLaunchViewMenuItem', 'radioItems', 'replaceViewAction', 'resolveSubMenu', 'sliderScale', 'staysOpenOnClick', 'tagColorPalette', 'unmethylated5mC', 'useAssemblySelection', 'useCopyToClipboard', 'useExportSvgPreference', 'useMouseState', 'useMouseTracking', 'useRecentLocations', 'wrapComponent']),
271
+ '@jbrowse/core/ui/AddCustomPluginDialog': uiStub,
272
+ '@jbrowse/core/ui/AddGenomePane': uiStub,
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+ '@jbrowse/core/ui/AppLogo': m64.default,
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+ '@jbrowse/core/ui/BaseTooltip': uiStub,
275
+ '@jbrowse/core/ui/buildExtraTrackMenuItems': m66,
276
+ '@jbrowse/core/ui/CascadingMenuButton': uiStub,
277
+ '@jbrowse/core/ui/ColorPicker': uiNamespace(['ColorPopover', 'default'], true),
278
+ '@jbrowse/core/ui/colors': m69,
279
+ '@jbrowse/core/ui/colorScale': m70,
280
+ '@jbrowse/core/ui/ConfirmDialog': uiStub,
281
+ '@jbrowse/core/ui/DataGridFlexContainer': m72.default,
282
+ '@jbrowse/core/ui/Dialog': uiStub,
283
+ '@jbrowse/core/ui/DraggableDialog': uiStub,
284
+ '@jbrowse/core/ui/DropDownMenu': uiStub,
285
+ '@jbrowse/core/ui/EditableTypography': uiStub,
286
+ '@jbrowse/core/ui/ErrorBar': uiStub,
287
+ '@jbrowse/core/ui/ErrorBoundary': m78,
288
+ '@jbrowse/core/ui/ErrorMessageStackTraceDialog': uiStub,
289
+ '@jbrowse/core/ui/ErrorOverlay': uiStub,
290
+ '@jbrowse/core/ui/filterMenuItems': m81,
291
+ '@jbrowse/core/ui/gpuFallback': m82,
292
+ '@jbrowse/core/ui/GpuFallbackButton': uiStub,
293
+ '@jbrowse/core/ui/hoverBoxStyle': m84,
294
+ '@jbrowse/core/ui/HoverTooltip': uiStub,
295
+ '@jbrowse/core/ui/Icons': uiNamespace(['Cable', 'DNA', 'Highlighter', 'Indexing', 'InfoIcon', 'TrackSelector']),
296
+ '@jbrowse/core/ui/InfoDialog': uiStub,
297
+ '@jbrowse/core/ui/JexlFilterDialog': uiStub,
298
+ '@jbrowse/core/ui/legendSpec': m89,
299
+ '@jbrowse/core/ui/LegendSwatchGlyph': m90,
300
+ '@jbrowse/core/ui/LoadingEllipses': uiStub,
301
+ '@jbrowse/core/ui/LoadingOverlay': uiNamespace(['default', 'useDelayedFlag'], true),
302
+ '@jbrowse/core/ui/Logo': m93,
303
+ '@jbrowse/core/ui/measureLegendText': m94,
304
+ '@jbrowse/core/ui/Menu': uiStub,
305
+ '@jbrowse/core/ui/menuItems': m96,
306
+ '@jbrowse/core/ui/multiTrackMenuItems': m97,
307
+ '@jbrowse/core/ui/palette': m98,
308
+ '@jbrowse/core/ui/PaletteContext': m99,
309
+ '@jbrowse/core/ui/persistentScrollbarStyle': m100,
310
+ '@jbrowse/core/ui/PluggableComponents': m101.default,
311
+ '@jbrowse/core/ui/PluginStoreCard': uiStub,
312
+ '@jbrowse/core/ui/PopoverPicker': uiStub,
313
+ '@jbrowse/core/ui/ProgressChip': uiStub,
314
+ '@jbrowse/core/ui/ResizeHandle': m105.default,
315
+ '@jbrowse/core/ui/ReturnToImportFormDialog': uiStub,
316
+ '@jbrowse/core/ui/SanitizedHTML': m107.default,
317
+ '@jbrowse/core/ui/scrollZoomLabels': m108,
318
+ '@jbrowse/core/ui/ScrollZoomToggle': uiStub,
319
+ '@jbrowse/core/ui/ShareLinkField': uiStub,
320
+ '@jbrowse/core/ui/showSubMenu': m111,
321
+ '@jbrowse/core/ui/Snackbar': m112.default,
322
+ '@jbrowse/core/ui/SnackbarModel': m113.default,
323
+ '@jbrowse/core/ui/StackTraceButton': uiStub,
324
+ '@jbrowse/core/ui/styleTheme': m115,
325
+ '@jbrowse/core/ui/SvgColorLegend': { ...m116, __esModule: true },
326
+ '@jbrowse/core/ui/theme': m117,
327
+ '@jbrowse/core/ui/useCoalescedPointer': m118,
328
+ '@jbrowse/core/ui/useMouseTracking': m119,
329
+ '@jbrowse/core/ui/VerticalScrollbar': { ...m120, __esModule: true },
330
+ '@jbrowse/core/ui/zIndexes': m121,
331
+ '@jbrowse/core/util': m122,
332
+ '@jbrowse/core/util/aborting': m123,
333
+ '@jbrowse/core/util/adapterMetadata': m124,
334
+ '@jbrowse/core/util/addRelativeUris': m125,
335
+ '@jbrowse/core/util/analytics': m126,
336
+ '@jbrowse/core/util/animationAllowed': m127,
337
+ '@jbrowse/core/util/assemblyConfigUtils': m128,
338
+ '@jbrowse/core/util/bandHeight': m129,
339
+ '@jbrowse/core/util/bandLayout': m130,
340
+ '@jbrowse/core/util/Base1DUtils': m131,
341
+ '@jbrowse/core/util/Base1DViewModel': m132.default,
342
+ '@jbrowse/core/util/bgzfWorkerPool': m133,
343
+ '@jbrowse/core/util/blockTypes': m134,
344
+ '@jbrowse/core/util/cacheBudgets': m135,
345
+ '@jbrowse/core/util/calculateDynamicBlocks': m136.default,
346
+ '@jbrowse/core/util/calculateStaticBlocks': m137.default,
347
+ '@jbrowse/core/util/categoricalField': m138,
348
+ '@jbrowse/core/util/chooseGridPitch': m139,
349
+ '@jbrowse/core/util/color': m140,
350
+ '@jbrowse/core/util/colorBits': m141,
351
+ '@jbrowse/core/util/colord': m142,
352
+ '@jbrowse/core/util/colorRamp': m143,
353
+ '@jbrowse/core/util/colorSchemes': m144,
354
+ '@jbrowse/core/util/convertCodingSequenceToPeptides': m145,
355
+ '@jbrowse/core/util/copyText': m146,
356
+ '@jbrowse/core/util/createAbortRotation': m147,
357
+ '@jbrowse/core/util/createSvgRasterCanvas': m148,
358
+ '@jbrowse/core/util/deepEqual': m149,
359
+ '@jbrowse/core/util/deepMerge': m150,
360
+ '@jbrowse/core/util/diagonalizeRegions': m151,
361
+ '@jbrowse/core/util/eventPoint': m152,
362
+ '@jbrowse/core/util/expandLooseSearchIndex': m153,
363
+ '@jbrowse/core/util/featureTransforms': m154,
364
+ '@jbrowse/core/util/fetchContext': m155,
365
+ '@jbrowse/core/util/fetchHub': m156,
366
+ '@jbrowse/core/util/fetchPhases': m157,
367
+ '@jbrowse/core/util/fieldReader': m158,
368
+ '@jbrowse/core/util/fileHandleStore': m159,
369
+ '@jbrowse/core/util/FileSaver': m160,
370
+ '@jbrowse/core/util/flatbush': m161.default,
371
+ '@jbrowse/core/util/formatFastaStrings': m162,
372
+ '@jbrowse/core/util/frameCoalescer': m163,
373
+ '@jbrowse/core/util/freezeDeep': m164,
374
+ '@jbrowse/core/util/geneticCodes': m165,
375
+ '@jbrowse/core/util/getRelativeX': m166,
376
+ '@jbrowse/core/util/glyphNames': m167,
377
+ '@jbrowse/core/util/groupKeys': m168,
378
+ '@jbrowse/core/util/highlights': m169,
379
+ '@jbrowse/core/util/hooks': m170,
380
+ '@jbrowse/core/util/htmlText': m171,
381
+ '@jbrowse/core/util/indexCandidates': m172,
382
+ '@jbrowse/core/util/installClearHoverOnSurfaceMove': m173,
383
+ '@jbrowse/core/util/installFetch': m174,
384
+ '@jbrowse/core/util/installInitAutorun': m175,
385
+ '@jbrowse/core/util/installPrerequisiteFetch': m176,
386
+ '@jbrowse/core/util/io': m177,
387
+ '@jbrowse/core/util/io/RemoteFileWithRangeCache': m178,
388
+ '@jbrowse/core/util/isDataCurrent': m179,
389
+ '@jbrowse/core/util/jexl': m180.default,
390
+ '@jbrowse/core/util/jexlFilters': m181,
391
+ '@jbrowse/core/util/jexlStrings': m182,
392
+ '@jbrowse/core/util/layouts': m183,
393
+ '@jbrowse/core/util/layouts/GranularRectLayout': m184.default,
394
+ '@jbrowse/core/util/layouts/placeRect': m185,
395
+ '@jbrowse/core/util/lazyAfterAttach': m186,
396
+ '@jbrowse/core/util/leadingEdgeAutorun': m187,
397
+ '@jbrowse/core/util/legendCandidates': m188,
398
+ '@jbrowse/core/util/librpc': m189,
399
+ '@jbrowse/core/util/localStorage': m190,
400
+ '@jbrowse/core/util/makeAssembly': m191,
401
+ '@jbrowse/core/util/markEncoding': m192,
402
+ '@jbrowse/core/util/measureText': m193,
403
+ '@jbrowse/core/util/mst-reflection': m194,
404
+ '@jbrowse/core/util/mstUtils': m195,
405
+ '@jbrowse/core/util/nanoid': m196,
406
+ '@jbrowse/core/util/numericUtils': m197,
407
+ '@jbrowse/core/util/offscreenCanvasPonyfill': m198,
408
+ '@jbrowse/core/util/openViews': m199,
409
+ '@jbrowse/core/util/paintLayer': m200,
410
+ '@jbrowse/core/util/parseLineByLine': m201,
411
+ '@jbrowse/core/util/progress': m202,
412
+ '@jbrowse/core/util/range': m203,
413
+ '@jbrowse/core/util/renderToStaticMarkup': uiNamespace(['renderToStaticMarkup']),
414
+ '@jbrowse/core/util/resolveRowHeight': m205,
415
+ '@jbrowse/core/util/rowStackGeometry': m206,
416
+ '@jbrowse/core/util/rxjs': m207,
417
+ '@jbrowse/core/util/sameStrings': m208,
418
+ '@jbrowse/core/util/setStackTraceLimit': m209,
419
+ '@jbrowse/core/util/simpleFeature': { ...m210, __esModule: true },
420
+ '@jbrowse/core/util/starFusion': m211,
421
+ '@jbrowse/core/util/stats': m212,
422
+ '@jbrowse/core/util/SvgCanvas': m213,
423
+ '@jbrowse/core/util/svgColorProps': m214,
424
+ '@jbrowse/core/util/tabix': m215,
425
+ '@jbrowse/core/util/thresholdScale': m216,
426
+ '@jbrowse/core/util/tickLabels': m217,
427
+ '@jbrowse/core/util/TimeTraveller': m218.default,
428
+ '@jbrowse/core/util/tracks': m219,
429
+ '@jbrowse/core/util/translateTranscript': m220,
430
+ '@jbrowse/core/util/tss-react': m221,
431
+ '@jbrowse/core/util/tss-react/types': m222,
432
+ '@jbrowse/core/util/types': m223,
433
+ '@jbrowse/core/util/types/data': m224,
434
+ '@jbrowse/core/util/types/mst': m225,
435
+ '@jbrowse/core/util/unknownSnapshotKeys': m226,
436
+ '@jbrowse/core/util/unzip': m227,
437
+ '@jbrowse/core/util/useEventCallback': m228,
438
+ '@jbrowse/core/util/useFetch': m229,
439
+ '@jbrowse/core/util/useFetchPlugins': m230,
440
+ '@jbrowse/core/util/useMeasure': m231.default,
441
+ '@jbrowse/core/util/usePanelVirtualScroll': m232,
442
+ '@jbrowse/core/util/usePanZoom': m233,
443
+ '@jbrowse/core/util/usePointerDrag': m234,
444
+ '@jbrowse/core/util/useResizeDrag': m235,
445
+ '@jbrowse/core/util/useRowVirtualScroll': m236,
446
+ '@jbrowse/core/util/viewHighlights': m237,
447
+ '@jbrowse/core/util/viewStatus': m238,
448
+ '@jbrowse/core/util/virtualRange': m239,
449
+ '@jbrowse/core/util/wheelZoom': m240,
450
+ '@jbrowse/core/util/whenViewSettled': m241,
451
+ '@jbrowse/core/util/withLaunchInput': m242,
452
+ };
453
+ export default libs;
@@ -0,0 +1,2 @@
1
+ declare const libs: any;
2
+ export default libs;
@@ -0,0 +1,67 @@
1
+ // The framework half of the runtime plugin ABI: the singletons a plugin must
2
+ // share with the host (React, MobX, MST) and Material UI. The @jbrowse half is
3
+ // generated from the exports maps — scripts/generateReExports.ts — and
4
+ // modules.ts joins the two. The worker's copy of this half is generated from
5
+ // it (frameworkWorkerModules.generated.ts), so a key added here is served in
6
+ // both realms by the next `pnpm autogen`.
7
+ import { alpha, createTheme, useTheme } from '@mui/material';
8
+ import SvgIcon, { createSvgIcon } from '@mui/material/SvgIcon';
9
+ import * as MUIUtils from '@mui/material/utils';
10
+ import * as mxreact from 'mobx-react';
11
+ import * as ReactDom from 'react-dom';
12
+ import * as ReactDomClient from 'react-dom/client';
13
+ import { cx, keyframes, makeStyles } from '../util/tss-react/index.js';
14
+ import { DataGridEntries } from './MuiDataGridReExports.js';
15
+ import { Entries } from './MuiReExports.js';
16
+ import { MUIStyles } from './MuiStylesReExports.js';
17
+ import frameworkShared from './frameworkShared.js';
18
+ import { lazyMap } from './lazify.js';
19
+ function makeLegacyMakeStyles() {
20
+ return (args) => {
21
+ const useStyles = makeStyles()(args);
22
+ return () => useStyles().classes;
23
+ };
24
+ }
25
+ const tssReact = { cx, keyframes, makeStyles };
26
+ const legacyMakeStyles = makeLegacyMakeStyles();
27
+ const muiMaterialLib = {
28
+ ...lazyMap(Entries),
29
+ alpha,
30
+ useTheme,
31
+ createTheme,
32
+ };
33
+ const muiStylesLib = { ...MUIStyles, makeStyles: legacyMakeStyles };
34
+ const libs = {
35
+ ...frameworkShared,
36
+ 'mobx-react': mxreact,
37
+ 'react-dom': ReactDom,
38
+ 'react-dom/client': ReactDomClient,
39
+ // Only lazy component entries are re-exported. The grid *hooks*
40
+ // (useGridApiContext/useGridApiRef/useGridRootProps) are intentionally left
41
+ // out: statically importing them here pulled the entire ~1.2 MB
42
+ // @mui/x-data-grid package into the eager first-paint graph, defeating the
43
+ // lazy import('@mui/x-data-grid') in MuiDataGridReExports. First-party code
44
+ // that needs the hooks imports them directly from '@mui/x-data-grid'.
45
+ '@mui/x-data-grid': {
46
+ ...lazyMap(DataGridEntries),
47
+ },
48
+ '@mui/material/utils': MUIUtils,
49
+ 'tss-react': tssReact,
50
+ 'tss-react/mui': tssReact,
51
+ '@mui/material': muiMaterialLib,
52
+ ...lazyMap(Entries, '@mui/material/'),
53
+ // @mui/icons-material — bundled into external plugins — reads the
54
+ // `createSvgIcon` *named* export from @mui/material/SvgIcon, but lazyMap
55
+ // exposes only the component (its default). SvgIcon is a primitive that's
56
+ // eagerly loaded in practice, so expose it directly with createSvgIcon
57
+ // attached: a default import still lands on a usable component (rollup-plugin-
58
+ // external-globals substitutes the value itself, esbuild's globalExternals
59
+ // reads `.default`), while the named import and icons-material's CJS
60
+ // `require(...).createSvgIcon` both find the util. A shallow copy carries the
61
+ // forwardRef's $$typeof/render so the shared SvgIcon export isn't mutated.
62
+ // Overrides the lazy entry above; verified against both bundlers.
63
+ // GMOD/jbrowse-components#5606.
64
+ '@mui/material/SvgIcon': Object.assign({}, SvgIcon, { createSvgIcon }),
65
+ '@mui/material/styles': muiStylesLib,
66
+ };
67
+ export default libs;
@@ -0,0 +1,12 @@
1
+ import * as React from 'react';
2
+ import * as mst from '@jbrowse/mobx-state-tree';
3
+ import * as mobx from 'mobx';
4
+ import * as ReactJSXRuntime from 'react/jsx-runtime';
5
+ declare const frameworkShared: {
6
+ react: typeof React;
7
+ 'react/jsx-runtime': typeof ReactJSXRuntime;
8
+ mobx: typeof mobx;
9
+ '@jbrowse/mobx-state-tree': typeof mst;
10
+ 'mobx-state-tree': typeof mst;
11
+ };
12
+ export default frameworkShared;
@@ -0,0 +1,16 @@
1
+ // The framework singletons both realms serve for real — one object, imported
2
+ // by the main-thread map and the generated worker map, so a plugin's React and
3
+ // MST are the host's in the worker too and the two maps hold the same values.
4
+ // eslint-disable-next-line no-restricted-imports
5
+ import * as React from 'react';
6
+ import * as mst from '@jbrowse/mobx-state-tree';
7
+ import * as mobx from 'mobx';
8
+ import * as ReactJSXRuntime from 'react/jsx-runtime';
9
+ const frameworkShared = {
10
+ react: React,
11
+ 'react/jsx-runtime': ReactJSXRuntime,
12
+ mobx,
13
+ '@jbrowse/mobx-state-tree': mst,
14
+ 'mobx-state-tree': mst,
15
+ };
16
+ export default frameworkShared;
@@ -0,0 +1,2 @@
1
+ declare const libs: Record<string, unknown>;
2
+ export default libs;