@jbrowse/core 4.2.1 → 5.0.0-beta.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1124) hide show
  1. package/README.md +783 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  97. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  98. package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
  99. package/esm/BaseFeatureWidget/formatDetails.js +103 -0
  100. package/esm/BaseFeatureWidget/index.d.ts +3 -1
  101. package/esm/BaseFeatureWidget/index.js +2 -2
  102. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
  103. package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
  104. package/esm/BaseFeatureWidget/types.d.ts +4 -3
  105. package/esm/BaseFeatureWidget/util.d.ts +4 -29
  106. package/esm/BaseFeatureWidget/util.js +20 -84
  107. package/esm/CorePlugin.js +11 -6
  108. package/esm/PhasedScheduler.d.ts +4 -2
  109. package/esm/PhasedScheduler.js +18 -2
  110. package/esm/Plugin.d.ts +6 -1
  111. package/esm/Plugin.js +7 -0
  112. package/esm/PluginLoader.d.ts +40 -40
  113. package/esm/PluginLoader.js +166 -82
  114. package/esm/PluginManager.d.ts +368 -55
  115. package/esm/PluginManager.js +326 -85
  116. package/esm/ReExports/BaseFeatureDetails.js +7 -6
  117. package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
  118. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  119. package/esm/ReExports/MuiReExports.d.ts +3 -134
  120. package/esm/ReExports/MuiReExports.js +43 -16
  121. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  122. package/esm/ReExports/MuiStylesReExports.js +55 -0
  123. package/esm/ReExports/index.js +1 -1
  124. package/esm/ReExports/lazify.d.ts +2 -2
  125. package/esm/ReExports/lazify.js +16 -3
  126. package/esm/ReExports/list.js +54 -229
  127. package/esm/ReExports/modules.js +84 -65
  128. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  129. package/esm/ReExports/muiComponentNames.js +130 -0
  130. package/esm/ReExports/publicUtil.d.ts +1 -0
  131. package/esm/ReExports/publicUtil.js +28 -0
  132. package/esm/ReExports/registry.d.ts +2 -0
  133. package/esm/ReExports/registry.js +28 -0
  134. package/esm/TextSearch/BaseResults.d.ts +20 -21
  135. package/esm/TextSearch/BaseResults.js +8 -33
  136. package/esm/TextSearch/TextSearchManager.d.ts +14 -34
  137. package/esm/TextSearch/TextSearchManager.js +87 -34
  138. package/esm/assemblyManager/assembly.d.ts +307 -34
  139. package/esm/assemblyManager/assembly.js +551 -262
  140. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  141. package/esm/assemblyManager/assemblyAdapters.js +18 -0
  142. package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
  143. package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
  144. package/esm/assemblyManager/assemblyManager.d.ts +711 -303
  145. package/esm/assemblyManager/assemblyManager.js +351 -46
  146. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
  147. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
  148. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  149. package/esm/assemblyManager/geneticCodes.js +47 -0
  150. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
  151. package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
  152. package/esm/assemblyManager/index.d.ts +1 -1
  153. package/esm/assemblyManager/index.js +2 -2
  154. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  155. package/esm/assemblyManager/loadRefNameMap.js +80 -0
  156. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  157. package/esm/assemblyManager/refNameColors.js +32 -0
  158. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  159. package/esm/assemblyManager/refNameMaps.js +87 -0
  160. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  161. package/esm/assemblyManager/refNameMismatch.js +66 -0
  162. package/esm/checkPlugins.d.ts +11 -0
  163. package/esm/checkPlugins.js +77 -0
  164. package/esm/configuration/configurationSchema.d.ts +154 -19
  165. package/esm/configuration/configurationSchema.js +359 -138
  166. package/esm/configuration/configurationSlot.d.ts +283 -30
  167. package/esm/configuration/configurationSlot.js +205 -226
  168. package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
  169. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  170. package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
  171. package/esm/configuration/formatDetailsConfigSchema.js +90 -0
  172. package/esm/configuration/fullConfSnapshot.d.ts +28 -0
  173. package/esm/configuration/fullConfSnapshot.js +66 -0
  174. package/esm/configuration/getConf.d.ts +88 -0
  175. package/esm/configuration/getConf.js +74 -0
  176. package/esm/configuration/index.d.ts +19 -3
  177. package/esm/configuration/index.js +19 -2
  178. package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
  179. package/esm/configuration/mergeFormatCallbacks.js +24 -0
  180. package/esm/configuration/promotableDefaults.d.ts +199 -0
  181. package/esm/configuration/promotableDefaults.js +326 -0
  182. package/esm/configuration/promotablePin.d.ts +55 -0
  183. package/esm/configuration/promotableResolve.d.ts +108 -0
  184. package/esm/configuration/promotableResolve.js +117 -0
  185. package/esm/configuration/promotableSlots.d.ts +12 -0
  186. package/esm/configuration/promotableSlots.js +45 -0
  187. package/esm/configuration/readConfObject.d.ts +56 -0
  188. package/esm/configuration/readConfObject.js +161 -0
  189. package/esm/configuration/schemaRegistry.d.ts +35 -0
  190. package/esm/configuration/schemaRegistry.js +50 -0
  191. package/esm/configuration/schemaTypes.d.ts +23 -0
  192. package/esm/configuration/schemaTypes.js +94 -0
  193. package/esm/configuration/slotFacade.d.ts +82 -0
  194. package/esm/configuration/slotFacade.js +89 -0
  195. package/esm/configuration/slotShape.d.ts +12 -0
  196. package/esm/configuration/slotShape.js +84 -0
  197. package/esm/configuration/slotValueUtils.d.ts +17 -0
  198. package/esm/configuration/slotValueUtils.js +25 -0
  199. package/esm/configuration/tabixIndexFields.d.ts +44 -0
  200. package/esm/configuration/tabixIndexFields.js +45 -0
  201. package/esm/configuration/tabixShorthand.d.ts +34 -0
  202. package/esm/configuration/tabixShorthand.js +45 -0
  203. package/esm/configuration/types.d.ts +170 -7
  204. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
  205. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
  206. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +120 -7
  207. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +99 -27
  208. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  209. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  210. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  211. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  212. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  213. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  214. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  215. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  216. package/esm/data_adapters/BaseAdapter/index.d.ts +6 -4
  217. package/esm/data_adapters/BaseAdapter/index.js +5 -5
  218. package/esm/data_adapters/BaseAdapter/stats.d.ts +5 -5
  219. package/esm/data_adapters/BaseAdapter/stats.js +48 -22
  220. package/esm/data_adapters/BaseAdapter/types.d.ts +10 -8
  221. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  222. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  223. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  224. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  225. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
  226. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
  227. package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
  228. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  229. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  230. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  231. package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
  232. package/esm/data_adapters/dataAdapterCache.js +62 -22
  233. package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
  234. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  235. package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
  236. package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
  237. package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
  238. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  239. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  240. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  241. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  242. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  243. package/esm/pluggableElementTypes/DisplayType.d.ts +10 -0
  244. package/esm/pluggableElementTypes/DisplayType.js +14 -1
  245. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  246. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
  247. package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
  248. package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
  249. package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
  250. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
  251. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  252. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  253. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  254. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  255. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  256. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
  257. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  258. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  259. package/esm/pluggableElementTypes/TrackType.js +1 -1
  260. package/esm/pluggableElementTypes/ViewType.d.ts +2 -1
  261. package/esm/pluggableElementTypes/ViewType.js +9 -2
  262. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  263. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  264. package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
  265. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  266. package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
  267. package/esm/pluggableElementTypes/extendElementType.js +68 -0
  268. package/esm/pluggableElementTypes/index.d.ts +7 -7
  269. package/esm/pluggableElementTypes/index.js +24 -14
  270. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
  271. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  272. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +605 -84
  273. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +172 -64
  274. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +196 -55
  275. package/esm/pluggableElementTypes/models/BaseTrackModel.js +332 -85
  276. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +167 -16
  277. package/esm/pluggableElementTypes/models/BaseViewModel.js +111 -16
  278. package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
  279. package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
  280. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
  281. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  282. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +174 -0
  283. package/esm/pluggableElementTypes/models/assertDisplayContract.js +246 -0
  284. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
  285. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
  286. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
  287. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
  288. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
  289. package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
  290. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
  291. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
  292. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
  293. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
  294. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
  295. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
  296. package/esm/pluggableElementTypes/models/index.d.ts +6 -3
  297. package/esm/pluggableElementTypes/models/index.js +10 -8
  298. package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
  299. package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
  300. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
  301. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
  302. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
  303. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
  304. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
  305. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
  306. package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
  307. package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
  308. package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
  309. package/esm/pluggableElementTypes/models/uriMatchesDomains.js +62 -0
  310. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.d.ts +5 -4
  311. package/esm/pluggableElementTypes/renderers/util/serializableFilterChain.js +20 -10
  312. package/esm/pluginDefinitions.d.ts +198 -0
  313. package/esm/pluginDefinitions.js +220 -0
  314. package/esm/rpc/BaseRpcDriver.d.ts +27 -35
  315. package/esm/rpc/BaseRpcDriver.js +74 -107
  316. package/esm/rpc/MainThreadRpcDriver.d.ts +9 -10
  317. package/esm/rpc/MainThreadRpcDriver.js +18 -29
  318. package/esm/rpc/RpcClient.d.ts +38 -0
  319. package/esm/rpc/RpcClient.js +154 -0
  320. package/esm/rpc/RpcManager.d.ts +116 -27
  321. package/esm/rpc/RpcManager.js +177 -50
  322. package/esm/rpc/RpcRegistry.d.ts +265 -0
  323. package/esm/rpc/RpcRegistry.js +1 -0
  324. package/esm/rpc/RpcServer.d.ts +41 -0
  325. package/esm/rpc/RpcServer.js +235 -0
  326. package/esm/rpc/WebWorkerRpcDriver.d.ts +71 -24
  327. package/esm/rpc/WebWorkerRpcDriver.js +312 -27
  328. package/esm/rpc/byteBudget.d.ts +49 -0
  329. package/esm/rpc/byteBudget.js +50 -0
  330. package/esm/rpc/configSchema.d.ts +27 -5
  331. package/esm/rpc/configSchema.js +40 -16
  332. package/esm/rpc/coreRpcMethods.d.ts +2 -5
  333. package/esm/rpc/coreRpcMethods.js +9 -12
  334. package/esm/rpc/explainTransferError.d.ts +35 -0
  335. package/esm/rpc/explainTransferError.js +158 -0
  336. package/esm/rpc/methods/CoreFreeResources.d.ts +19 -4
  337. package/esm/rpc/methods/CoreFreeResources.js +17 -6
  338. package/esm/rpc/methods/CoreGetExportData.d.ts +5 -18
  339. package/esm/rpc/methods/CoreGetExportData.js +26 -15
  340. package/esm/rpc/methods/CoreGetFeatures.d.ts +6 -15
  341. package/esm/rpc/methods/CoreGetFeatures.js +15 -17
  342. package/esm/rpc/methods/CoreGetInfo.d.ts +6 -0
  343. package/esm/rpc/methods/CoreGetInfo.js +12 -0
  344. package/esm/rpc/methods/CoreGetMetadata.d.ts +4 -7
  345. package/esm/rpc/methods/CoreGetMetadata.js +6 -9
  346. package/esm/rpc/methods/CoreGetRefNames.d.ts +4 -8
  347. package/esm/rpc/methods/CoreGetRefNames.js +24 -13
  348. package/esm/rpc/methods/CoreGetRegionByteEstimate.d.ts +6 -0
  349. package/esm/rpc/methods/CoreGetRegionByteEstimate.js +19 -0
  350. package/esm/rpc/methods/CoreGetRegions.d.ts +4 -6
  351. package/esm/rpc/methods/CoreGetRegions.js +6 -9
  352. package/esm/rpc/methods/CoreGetSequence.d.ts +4 -11
  353. package/esm/rpc/methods/CoreGetSequence.js +12 -13
  354. package/esm/rpc/serializeError/index.d.ts +9 -0
  355. package/esm/rpc/serializeError/index.js +86 -0
  356. package/esm/svg/SvgExport.d.ts +30 -0
  357. package/esm/svg/SvgExport.js +53 -0
  358. package/esm/svg/constants.d.ts +1 -0
  359. package/esm/svg/constants.js +5 -0
  360. package/esm/svg/saveSvgAsImage.d.ts +6 -0
  361. package/esm/svg/saveSvgAsImage.js +90 -0
  362. package/esm/svg/svgId.d.ts +42 -0
  363. package/esm/svg/svgId.js +84 -0
  364. package/esm/svg/svgReady.d.ts +136 -0
  365. package/esm/svg/svgReady.js +164 -0
  366. package/esm/svg/trackNames.d.ts +27 -0
  367. package/esm/svg/trackNames.js +31 -0
  368. package/esm/svg/wrapSvgExport.d.ts +12 -0
  369. package/esm/svg/wrapSvgExport.js +78 -0
  370. package/esm/ui/ActionLink.d.ts +7 -0
  371. package/esm/ui/ActionLink.js +9 -0
  372. package/esm/ui/AddCustomPluginDialog.d.ts +14 -0
  373. package/esm/ui/AddCustomPluginDialog.js +61 -0
  374. package/esm/ui/AddGenomePane.d.ts +8 -0
  375. package/esm/ui/AddGenomePane.js +228 -0
  376. package/esm/ui/AdvancedOptions.d.ts +6 -0
  377. package/esm/ui/AdvancedOptions.js +17 -0
  378. package/esm/ui/AppLogo.d.ts +1 -1
  379. package/esm/ui/AppLogo.js +2 -2
  380. package/esm/ui/AssemblySelector.d.ts +5 -8
  381. package/esm/ui/AssemblySelector.js +8 -26
  382. package/esm/ui/BaseExportSvgDialog.d.ts +16 -0
  383. package/esm/ui/BaseExportSvgDialog.js +84 -0
  384. package/esm/ui/BaseTooltip.d.ts +14 -3
  385. package/esm/ui/BaseTooltip.js +151 -34
  386. package/esm/ui/CascadingMenu.d.ts +9 -18
  387. package/esm/ui/CascadingMenu.js +368 -41
  388. package/esm/ui/CascadingMenuButton.d.ts +9 -11
  389. package/esm/ui/CascadingMenuButton.js +36 -18
  390. package/esm/ui/CascadingMenuHelpDialog.d.ts +2 -2
  391. package/esm/ui/CascadingMenuHelpDialog.js +4 -5
  392. package/esm/ui/CascadingMenuHelpIconButton.d.ts +2 -1
  393. package/esm/ui/CascadingMenuHelpIconButton.js +18 -9
  394. package/esm/ui/ColorPicker.d.ts +6 -9
  395. package/esm/ui/ColorPicker.js +36 -39
  396. package/esm/ui/ConfirmDialog.d.ts +2 -9
  397. package/esm/ui/ConfirmDialog.js +6 -9
  398. package/esm/ui/ContextMenu.d.ts +50 -0
  399. package/esm/ui/ContextMenu.js +55 -0
  400. package/esm/ui/CopyToClipboardButton.d.ts +10 -0
  401. package/esm/ui/CopyToClipboardButton.js +14 -0
  402. package/esm/ui/Crosshairs.d.ts +10 -0
  403. package/esm/ui/Crosshairs.js +15 -0
  404. package/esm/ui/DOMPurifySanitizedHTML.d.ts +1 -1
  405. package/esm/ui/DOMPurifySanitizedHTML.js +5 -5
  406. package/esm/ui/DataGridFlexContainer.d.ts +9 -2
  407. package/esm/ui/DataGridFlexContainer.js +4 -3
  408. package/esm/ui/Dialog.d.ts +5 -2
  409. package/esm/ui/Dialog.js +35 -27
  410. package/esm/ui/DraggableDialog.d.ts +3 -3
  411. package/esm/ui/DraggableDialog.js +50 -12
  412. package/esm/ui/DropDownMenu.d.ts +4 -2
  413. package/esm/ui/DropDownMenu.js +4 -4
  414. package/esm/ui/EditableTypography.d.ts +3 -1
  415. package/esm/ui/EditableTypography.js +34 -26
  416. package/esm/ui/ErrorActions.d.ts +24 -0
  417. package/esm/ui/ErrorActions.js +20 -0
  418. package/esm/ui/ErrorBanner.d.ts +7 -0
  419. package/esm/ui/ErrorBanner.js +35 -0
  420. package/esm/ui/ErrorBar.d.ts +6 -0
  421. package/esm/ui/ErrorBar.js +35 -0
  422. package/esm/ui/ErrorBoundary.d.ts +29 -5
  423. package/esm/ui/ErrorBoundary.js +32 -2
  424. package/esm/ui/ErrorMessage.d.ts +2 -4
  425. package/esm/ui/ErrorMessage.js +17 -52
  426. package/esm/ui/ErrorMessageStackTraceContents.d.ts +1 -1
  427. package/esm/ui/ErrorMessageStackTraceContents.js +3 -3
  428. package/esm/ui/ErrorMessageStackTraceDialog.d.ts +1 -1
  429. package/esm/ui/ErrorMessageStackTraceDialog.js +57 -96
  430. package/esm/ui/ErrorOverlay.d.ts +8 -0
  431. package/esm/ui/ErrorOverlay.js +5 -0
  432. package/esm/ui/ExportSvgDialog.d.ts +7 -0
  433. package/esm/ui/ExportSvgDialog.js +9 -0
  434. package/esm/ui/ExternalLink.d.ts +1 -1
  435. package/esm/ui/FactoryResetDialog.d.ts +1 -1
  436. package/esm/ui/FactoryResetDialog.js +6 -15
  437. package/esm/ui/FatalErrorDialog.d.ts +3 -2
  438. package/esm/ui/FatalErrorDialog.js +6 -5
  439. package/esm/ui/FileDropZone.d.ts +25 -0
  440. package/esm/ui/FileDropZone.js +128 -0
  441. package/esm/ui/FileSelector/FileSelector.d.ts +1 -1
  442. package/esm/ui/FileSelector/FileSelector.js +59 -30
  443. package/esm/ui/FileSelector/LocalFileChooser.d.ts +7 -2
  444. package/esm/ui/FileSelector/LocalFileChooser.js +61 -47
  445. package/esm/ui/FileSelector/LocationInput.d.ts +1 -1
  446. package/esm/ui/FileSelector/LocationInput.js +8 -12
  447. package/esm/ui/FileSelector/SourceTypeSelector.d.ts +5 -5
  448. package/esm/ui/FileSelector/SourceTypeSelector.js +9 -7
  449. package/esm/ui/FileSelector/UrlChooser.d.ts +1 -1
  450. package/esm/ui/FileSelector/UrlChooser.js +26 -2
  451. package/esm/ui/FileSelector/emptySourceType.d.ts +2 -0
  452. package/esm/ui/FileSelector/emptySourceType.js +14 -0
  453. package/esm/ui/FileSelector/useInternetAccounts.d.ts +383 -71
  454. package/esm/ui/FileSelector/useInternetAccounts.js +13 -6
  455. package/esm/ui/FileSelector/util.d.ts +58 -3
  456. package/esm/ui/FileSelector/util.js +128 -11
  457. package/esm/ui/GpuFallbackButton.d.ts +12 -0
  458. package/esm/ui/GpuFallbackButton.js +20 -0
  459. package/esm/ui/HoverMenu.d.ts +12 -3
  460. package/esm/ui/HoverMenu.js +31 -9
  461. package/esm/ui/HoverTooltip.d.ts +27 -0
  462. package/esm/ui/HoverTooltip.js +24 -0
  463. package/esm/ui/Icons.d.ts +6 -4
  464. package/esm/ui/Icons.js +9 -0
  465. package/esm/ui/InfoDialog.d.ts +7 -0
  466. package/esm/ui/InfoDialog.js +16 -0
  467. package/esm/ui/InlineMenuControls.d.ts +6 -0
  468. package/esm/ui/InlineMenuControls.js +17 -0
  469. package/esm/ui/JexlFilterDialog.d.ts +23 -0
  470. package/esm/ui/JexlFilterDialog.js +94 -0
  471. package/esm/ui/LabeledCheckbox.d.ts +9 -0
  472. package/esm/ui/LabeledCheckbox.js +7 -0
  473. package/esm/ui/LegendSwatchGlyph.d.ts +7 -0
  474. package/esm/ui/LegendSwatchGlyph.js +25 -0
  475. package/esm/ui/LoadingDots.d.ts +1 -0
  476. package/esm/ui/LoadingDots.js +30 -0
  477. package/esm/ui/LoadingEllipses.d.ts +17 -1
  478. package/esm/ui/LoadingEllipses.js +20 -29
  479. package/esm/ui/LoadingOverlay.d.ts +9 -0
  480. package/esm/ui/LoadingOverlay.js +137 -0
  481. package/esm/ui/LoadingProgress.d.ts +16 -0
  482. package/esm/ui/LoadingProgress.js +16 -0
  483. package/esm/ui/Logo.d.ts +2 -2
  484. package/esm/ui/Logo.js +23 -24
  485. package/esm/ui/Menu.js +1 -1
  486. package/esm/ui/MenuItemChevron.d.ts +3 -0
  487. package/esm/ui/MenuItemChevron.js +19 -0
  488. package/esm/ui/MenuItemEndDecoration.d.ts +4 -0
  489. package/esm/ui/MenuItemEndDecoration.js +28 -0
  490. package/esm/ui/MenuItemTrailing.d.ts +12 -0
  491. package/esm/ui/MenuItemTrailing.js +42 -0
  492. package/esm/ui/MenuTypes.d.ts +124 -4
  493. package/esm/ui/MenuTypes.js +13 -1
  494. package/esm/ui/MonospaceTextField.d.ts +9 -0
  495. package/esm/ui/MonospaceTextField.js +37 -0
  496. package/esm/ui/NumberTextField.d.ts +31 -0
  497. package/esm/ui/NumberTextField.js +33 -0
  498. package/esm/ui/PaletteContext.d.ts +85 -0
  499. package/esm/ui/PaletteContext.js +104 -0
  500. package/esm/ui/PinAdornment.d.ts +5 -0
  501. package/esm/ui/PinAdornment.js +79 -0
  502. package/esm/ui/PluggableComponent.d.ts +10 -0
  503. package/esm/ui/PluggableComponent.js +19 -0
  504. package/esm/ui/PluggableComponents.d.ts +29 -0
  505. package/esm/ui/PluggableComponents.js +28 -0
  506. package/esm/ui/PluggableElements.d.ts +23 -0
  507. package/esm/ui/PluggableElements.js +24 -0
  508. package/esm/ui/PluginStoreCard.d.ts +17 -0
  509. package/esm/ui/PluginStoreCard.js +45 -0
  510. package/esm/ui/PopoverPicker.d.ts +6 -0
  511. package/esm/ui/PopoverPicker.js +25 -0
  512. package/esm/ui/PrerenderedCanvas.d.ts +1 -1
  513. package/esm/ui/PrerenderedCanvas.js +5 -4
  514. package/esm/ui/ProgressChip.d.ts +37 -0
  515. package/esm/ui/ProgressChip.js +66 -0
  516. package/esm/ui/RedErrorMessageBox.d.ts +1 -1
  517. package/esm/ui/RedErrorMessageBox.js +9 -3
  518. package/esm/ui/RefNameAutocomplete/EndAdornment.d.ts +5 -0
  519. package/esm/ui/RefNameAutocomplete/EndAdornment.js +31 -0
  520. package/esm/ui/RefNameAutocomplete/HelpDialog.d.ts +3 -0
  521. package/esm/ui/RefNameAutocomplete/HelpDialog.js +7 -0
  522. package/esm/ui/RefNameAutocomplete/index.d.ts +22 -0
  523. package/esm/ui/RefNameAutocomplete/index.js +78 -0
  524. package/esm/ui/RefNameAutocomplete/util.d.ts +49 -0
  525. package/esm/ui/RefNameAutocomplete/util.js +168 -0
  526. package/esm/ui/ReplaceCurrentViewButton.d.ts +19 -0
  527. package/esm/ui/ReplaceCurrentViewButton.js +22 -0
  528. package/esm/ui/ResizeHandle.d.ts +13 -7
  529. package/esm/ui/ResizeHandle.js +42 -55
  530. package/esm/ui/ReturnToImportFormDialog.d.ts +1 -1
  531. package/esm/ui/ReturnToImportFormDialog.js +7 -9
  532. package/esm/ui/SanitizedHTML.d.ts +6 -1
  533. package/esm/ui/SanitizedHTML.js +7 -46
  534. package/esm/ui/ScrollEdgeShadow.d.ts +44 -0
  535. package/esm/ui/ScrollEdgeShadow.js +98 -0
  536. package/esm/ui/ScrollZoomToggle.d.ts +38 -0
  537. package/esm/ui/ScrollZoomToggle.js +92 -0
  538. package/esm/ui/SequenceAdapterInputs.d.ts +9 -0
  539. package/esm/ui/SequenceAdapterInputs.js +30 -0
  540. package/esm/ui/SettingsChangesTable.d.ts +14 -0
  541. package/esm/ui/SettingsChangesTable.js +49 -0
  542. package/esm/ui/ShareLinkField.d.ts +6 -0
  543. package/esm/ui/ShareLinkField.js +42 -0
  544. package/esm/ui/SingleSlider.d.ts +8 -0
  545. package/esm/ui/SingleSlider.js +11 -0
  546. package/esm/ui/SizeSliderRow.d.ts +16 -0
  547. package/esm/ui/SizeSliderRow.js +50 -0
  548. package/esm/ui/SliderTooltip.d.ts +2 -0
  549. package/esm/ui/SliderTooltip.js +17 -0
  550. package/esm/ui/Snackbar.d.ts +4 -2
  551. package/esm/ui/Snackbar.js +11 -8
  552. package/esm/ui/SnackbarContents.d.ts +1 -1
  553. package/esm/ui/SnackbarContents.js +21 -3
  554. package/esm/ui/SnackbarModel.d.ts +40 -0
  555. package/esm/ui/SnackbarModel.js +43 -11
  556. package/esm/ui/StackTraceButton.d.ts +5 -0
  557. package/esm/ui/StackTraceButton.js +16 -0
  558. package/esm/ui/StatusProgressBar.d.ts +37 -0
  559. package/esm/ui/StatusProgressBar.js +76 -0
  560. package/esm/ui/SubmitDialog.d.ts +6 -0
  561. package/esm/ui/SubmitDialog.js +9 -0
  562. package/esm/ui/SubmitForm.d.ts +23 -0
  563. package/esm/ui/SubmitForm.js +23 -0
  564. package/esm/ui/SvgColorLegend.d.ts +13 -0
  565. package/esm/ui/SvgColorLegend.js +65 -0
  566. package/esm/ui/SvgGradientLegend.d.ts +26 -0
  567. package/esm/ui/SvgGradientLegend.js +26 -0
  568. package/esm/ui/TagTextField.d.ts +40 -0
  569. package/esm/ui/TagTextField.js +32 -0
  570. package/esm/ui/VerticalScrollbar.d.ts +45 -0
  571. package/esm/ui/VerticalScrollbar.js +158 -0
  572. package/esm/ui/ViewLoadingScreen.d.ts +24 -0
  573. package/esm/ui/ViewLoadingScreen.js +76 -0
  574. package/esm/ui/addExtensionElement.d.ts +18 -0
  575. package/esm/ui/addExtensionElement.js +23 -0
  576. package/esm/ui/buildExtraTrackMenuItems.d.ts +22 -0
  577. package/esm/ui/buildExtraTrackMenuItems.js +14 -0
  578. package/esm/ui/colorSwatchStyle.d.ts +9 -0
  579. package/esm/ui/colorSwatchStyle.js +11 -0
  580. package/esm/ui/colors.d.ts +61 -8
  581. package/esm/ui/colors.js +135 -1
  582. package/esm/ui/extensionSelectors.d.ts +38 -0
  583. package/esm/ui/extensionSelectors.js +49 -0
  584. package/esm/ui/filterMenuItems.d.ts +112 -0
  585. package/esm/ui/filterMenuItems.js +86 -0
  586. package/esm/ui/formatErrorStack.d.ts +1 -0
  587. package/esm/ui/formatErrorStack.js +56 -0
  588. package/esm/ui/gpuFallback.d.ts +33 -0
  589. package/esm/ui/gpuFallback.js +39 -0
  590. package/esm/ui/highlightChipReveal.d.ts +32 -0
  591. package/esm/ui/highlightChipReveal.js +39 -0
  592. package/esm/ui/hoverBoxStyle.d.ts +11 -0
  593. package/esm/ui/hoverBoxStyle.js +13 -0
  594. package/esm/ui/index.d.ts +76 -4
  595. package/esm/ui/index.js +90 -19
  596. package/esm/ui/inlineMenuRowWidth.d.ts +1 -0
  597. package/esm/ui/inlineMenuRowWidth.js +8 -0
  598. package/esm/ui/launchTargetsMenuItem.d.ts +18 -0
  599. package/esm/ui/launchTargetsMenuItem.js +24 -0
  600. package/esm/ui/launchViewMenu.d.ts +4 -0
  601. package/esm/ui/launchViewMenu.js +36 -0
  602. package/esm/ui/legendMenuItem.d.ts +38 -0
  603. package/esm/ui/legendMenuItem.js +44 -0
  604. package/esm/ui/legendSpec.d.ts +62 -0
  605. package/esm/ui/legendSpec.js +78 -0
  606. package/esm/ui/loadingDotKeyframes.d.ts +18 -0
  607. package/esm/ui/loadingDotKeyframes.js +17 -0
  608. package/esm/ui/makeSizeMenu.d.ts +30 -0
  609. package/esm/ui/makeSizeMenu.js +82 -0
  610. package/esm/ui/mapStackTrace.d.ts +8 -0
  611. package/esm/ui/mapStackTrace.js +108 -0
  612. package/esm/ui/measureLegendText.d.ts +1 -0
  613. package/esm/ui/measureLegendText.js +8 -0
  614. package/esm/ui/menuItemAdornment.d.ts +33 -0
  615. package/esm/ui/menuItemAdornment.js +50 -0
  616. package/esm/ui/menuItems.d.ts +28 -0
  617. package/esm/ui/menuItems.js +26 -0
  618. package/esm/ui/menuLabels.d.ts +41 -0
  619. package/esm/ui/menuLabels.js +43 -0
  620. package/esm/ui/multiTrackMenuItems.d.ts +19 -0
  621. package/esm/ui/multiTrackMenuItems.js +15 -0
  622. package/esm/ui/palette.d.ts +559 -0
  623. package/esm/ui/palette.js +746 -0
  624. package/esm/ui/parseError.d.ts +4 -0
  625. package/esm/ui/parseError.js +18 -0
  626. package/esm/ui/persistentScrollbarStyle.d.ts +49 -0
  627. package/esm/ui/persistentScrollbarStyle.js +53 -0
  628. package/esm/ui/promotableMenuItems.d.ts +19 -0
  629. package/esm/ui/promotableMenuItems.js +89 -0
  630. package/esm/ui/promotablePinCoverage.d.ts +44 -0
  631. package/esm/ui/promotablePinCoverage.js +87 -0
  632. package/esm/ui/radioSubMenu.d.ts +33 -0
  633. package/esm/ui/radioSubMenu.js +32 -0
  634. package/esm/ui/react-colorful.js +5 -1
  635. package/esm/ui/replaceViewAction.d.ts +31 -0
  636. package/esm/ui/replaceViewAction.js +39 -0
  637. package/esm/ui/rewriteExternalAnchors.d.ts +1 -0
  638. package/esm/ui/rewriteExternalAnchors.js +8 -0
  639. package/esm/ui/scrollZoomLabels.d.ts +17 -0
  640. package/esm/ui/scrollZoomLabels.js +22 -0
  641. package/esm/ui/showSubMenu.d.ts +19 -0
  642. package/esm/ui/showSubMenu.js +30 -0
  643. package/esm/ui/sliderScale.d.ts +6 -0
  644. package/esm/ui/sliderScale.js +30 -0
  645. package/esm/ui/statusProgressKeyframes.d.ts +6 -0
  646. package/esm/ui/statusProgressKeyframes.js +14 -0
  647. package/esm/ui/stripStackTraceMessage.d.ts +1 -0
  648. package/esm/ui/stripStackTraceMessage.js +9 -0
  649. package/esm/ui/styleTheme.d.ts +158 -0
  650. package/esm/ui/styleTheme.js +115 -0
  651. package/esm/ui/submenuAim.d.ts +30 -0
  652. package/esm/ui/submenuAim.js +37 -0
  653. package/esm/ui/theme.d.ts +343 -29
  654. package/esm/ui/theme.js +258 -342
  655. package/esm/ui/toggleMenuItems.d.ts +44 -0
  656. package/esm/ui/toggleMenuItems.js +60 -0
  657. package/esm/ui/useAssemblySelection.d.ts +153 -0
  658. package/esm/ui/useAssemblySelection.js +54 -0
  659. package/esm/ui/useCoalescedPointer.d.ts +36 -0
  660. package/esm/ui/useCoalescedPointer.js +60 -0
  661. package/esm/ui/useCopyToClipboard.d.ts +15 -0
  662. package/esm/ui/useCopyToClipboard.js +41 -0
  663. package/esm/ui/useExportSvgPreference.d.ts +1 -0
  664. package/esm/ui/useExportSvgPreference.js +4 -0
  665. package/esm/ui/useMouseTracking.d.ts +71 -0
  666. package/esm/ui/useMouseTracking.js +179 -0
  667. package/esm/ui/useRecentLocations.d.ts +28 -0
  668. package/esm/ui/useRecentLocations.js +31 -0
  669. package/esm/ui/wrapComponent.d.ts +47 -0
  670. package/esm/ui/wrapComponent.js +58 -0
  671. package/esm/ui/zIndexes.d.ts +28 -0
  672. package/esm/ui/zIndexes.js +38 -0
  673. package/esm/util/Base1DUtils.d.ts +204 -16
  674. package/esm/util/Base1DUtils.js +310 -175
  675. package/esm/util/Base1DViewModel.d.ts +97 -20
  676. package/esm/util/Base1DViewModel.js +148 -39
  677. package/esm/util/FileSaver/index.d.ts +1 -0
  678. package/esm/util/FileSaver/index.js +27 -0
  679. package/esm/util/IntervalTree.d.ts +18 -39
  680. package/esm/util/IntervalTree.js +63 -244
  681. package/esm/util/SvgCanvas.d.ts +81 -0
  682. package/esm/util/SvgCanvas.js +500 -0
  683. package/esm/util/TimeTraveller.d.ts +12 -0
  684. package/esm/util/TimeTraveller.js +130 -27
  685. package/esm/util/aborting.d.ts +17 -4
  686. package/esm/util/aborting.js +30 -25
  687. package/esm/util/adapterMetadata.d.ts +20 -0
  688. package/esm/util/adapterMetadata.js +39 -0
  689. package/esm/util/addAndShowTrack.d.ts +22 -0
  690. package/esm/util/addAndShowTrack.js +23 -0
  691. package/esm/util/addRelativeUris.d.ts +17 -0
  692. package/esm/util/addRelativeUris.js +42 -0
  693. package/esm/util/addTrackComponent.d.ts +72 -0
  694. package/esm/util/addTrackComponent.js +53 -0
  695. package/esm/util/addTrackFromWidget.d.ts +94 -0
  696. package/esm/util/addTrackFromWidget.js +90 -0
  697. package/esm/util/analytics.d.ts +32 -3
  698. package/esm/util/analytics.js +102 -49
  699. package/esm/util/animationAllowed.d.ts +17 -0
  700. package/esm/util/animationAllowed.js +22 -0
  701. package/esm/util/applyInitSettings.d.ts +79 -0
  702. package/esm/util/applyInitSettings.js +91 -0
  703. package/esm/util/applyRowResizeWheel.d.ts +10 -0
  704. package/esm/util/applyRowResizeWheel.js +34 -0
  705. package/esm/util/assemblyConfigUtils.d.ts +144 -0
  706. package/esm/util/assemblyConfigUtils.js +498 -0
  707. package/esm/util/bandHeight.d.ts +53 -0
  708. package/esm/util/bandHeight.js +56 -0
  709. package/esm/util/bandLayout.d.ts +51 -0
  710. package/esm/util/bandLayout.js +36 -0
  711. package/esm/util/bezierConnector.d.ts +14 -0
  712. package/esm/util/bezierConnector.js +108 -0
  713. package/esm/util/bgzfWorkerPool.d.ts +78 -0
  714. package/esm/util/bgzfWorkerPool.js +81 -0
  715. package/esm/util/blockTypes.d.ts +64 -45
  716. package/esm/util/blockTypes.js +67 -74
  717. package/esm/util/bpUtils.d.ts +81 -0
  718. package/esm/util/bpUtils.js +103 -0
  719. package/esm/util/cacheBudgets.d.ts +52 -0
  720. package/esm/util/cacheBudgets.js +52 -0
  721. package/esm/util/cachedSetup.d.ts +51 -0
  722. package/esm/util/cachedSetup.js +87 -0
  723. package/esm/util/calculateDynamicBlocks.d.ts +5 -0
  724. package/esm/util/calculateDynamicBlocks.js +85 -82
  725. package/esm/util/calculateStaticBlocks.d.ts +2 -3
  726. package/esm/util/calculateStaticBlocks.js +48 -71
  727. package/esm/util/chooseGridPitch.d.ts +9 -0
  728. package/esm/util/chooseGridPitch.js +31 -0
  729. package/esm/util/clampToContig.d.ts +26 -0
  730. package/esm/util/clampToContig.js +28 -0
  731. package/esm/util/cmpStr.d.ts +1 -0
  732. package/esm/util/cmpStr.js +7 -0
  733. package/esm/util/coarseStripHTML.js +3 -15
  734. package/esm/util/color/cssColorsLevel4.js +6 -2
  735. package/esm/util/color/index.d.ts +81 -2
  736. package/esm/util/color/index.js +194 -25
  737. package/esm/util/color-bits/bit.d.ts +4 -0
  738. package/esm/util/color-bits/bit.js +37 -0
  739. package/esm/util/color-bits/convert.d.ts +23 -0
  740. package/esm/util/color-bits/convert.js +294 -0
  741. package/esm/util/color-bits/core.d.ts +34 -0
  742. package/esm/util/color-bits/core.js +67 -0
  743. package/esm/util/color-bits/format.d.ts +24 -0
  744. package/esm/util/color-bits/format.js +82 -0
  745. package/esm/util/color-bits/functions.d.ts +33 -0
  746. package/esm/util/color-bits/functions.js +70 -0
  747. package/esm/util/color-bits/index.d.ts +5 -0
  748. package/esm/util/color-bits/index.js +4 -0
  749. package/esm/util/color-bits/parse.d.ts +17 -0
  750. package/esm/util/color-bits/parse.js +382 -0
  751. package/esm/util/colorBits.d.ts +39 -0
  752. package/esm/util/colorBits.js +180 -0
  753. package/esm/util/colorRamp.d.ts +37 -0
  754. package/esm/util/colorRamp.js +93 -0
  755. package/esm/util/colord.d.ts +8 -0
  756. package/esm/util/colord.js +43 -191
  757. package/esm/util/convertCodingSequenceToPeptides.d.ts +17 -3
  758. package/esm/util/convertCodingSequenceToPeptides.js +51 -4
  759. package/esm/util/copyText.d.ts +18 -0
  760. package/esm/util/copyText.js +30 -0
  761. package/esm/util/copyToClipboard.d.ts +4 -0
  762. package/esm/util/copyToClipboard.js +58 -0
  763. package/esm/util/createStopTokenRotation.d.ts +117 -0
  764. package/esm/util/createStopTokenRotation.js +147 -0
  765. package/esm/util/createSvgRasterCanvas.d.ts +7 -0
  766. package/esm/util/createSvgRasterCanvas.js +22 -0
  767. package/esm/util/crypto.d.ts +24 -0
  768. package/esm/util/crypto.js +85 -2
  769. package/esm/util/dataGridUtils.d.ts +9 -0
  770. package/esm/util/dataGridUtils.js +36 -0
  771. package/esm/util/dedupe.js +1 -0
  772. package/esm/util/deepEqual.d.ts +8 -0
  773. package/esm/util/deepEqual.js +22 -0
  774. package/esm/util/deepMerge.d.ts +20 -0
  775. package/esm/util/deepMerge.js +44 -0
  776. package/esm/util/diagonalizeRegions.d.ts +23 -0
  777. package/esm/util/diagonalizeRegions.js +192 -0
  778. package/esm/util/environment.d.ts +4 -0
  779. package/esm/util/environment.js +43 -0
  780. package/esm/util/eventPoint.d.ts +32 -0
  781. package/esm/util/eventPoint.js +28 -0
  782. package/esm/util/fetchAndMaybeUnzip.d.ts +6 -0
  783. package/esm/util/fetchAndMaybeUnzip.js +64 -0
  784. package/esm/util/fetchContext.d.ts +82 -0
  785. package/esm/util/fetchContext.js +59 -0
  786. package/esm/util/fetchHub.d.ts +15 -0
  787. package/esm/util/fetchHub.js +31 -0
  788. package/esm/util/fetchJson.d.ts +1 -0
  789. package/esm/util/fetchJson.js +7 -0
  790. package/esm/util/fetchPhases.d.ts +77 -0
  791. package/esm/util/fetchPhases.js +1 -0
  792. package/esm/util/fetchSeq.d.ts +5 -1
  793. package/esm/util/fetchSeq.js +18 -6
  794. package/esm/util/fileHandleStore.d.ts +19 -2
  795. package/esm/util/fileHandleStore.js +95 -35
  796. package/esm/util/flatbush/index.d.ts +27 -6
  797. package/esm/util/flatbush/index.js +194 -218
  798. package/esm/util/formatBytes.d.ts +9 -0
  799. package/esm/util/formatBytes.js +18 -0
  800. package/esm/util/formatFastaStrings.d.ts +13 -0
  801. package/esm/util/formatFastaStrings.js +13 -0
  802. package/esm/util/formatGuessers.d.ts +30 -0
  803. package/esm/util/formatGuessers.js +69 -0
  804. package/esm/util/formatRelativeTime.d.ts +1 -0
  805. package/esm/util/formatRelativeTime.js +25 -0
  806. package/esm/util/frameCoalescer.d.ts +30 -0
  807. package/esm/util/frameCoalescer.js +22 -0
  808. package/esm/util/freezeDeep.d.ts +28 -0
  809. package/esm/util/freezeDeep.js +41 -0
  810. package/esm/util/geneticCodes.d.ts +56 -0
  811. package/esm/util/geneticCodes.js +371 -0
  812. package/esm/util/getFileName.d.ts +11 -0
  813. package/esm/util/getFileName.js +34 -0
  814. package/esm/util/getLocationUri.d.ts +49 -0
  815. package/esm/util/getLocationUri.js +63 -0
  816. package/esm/util/getRelativeX.d.ts +4 -0
  817. package/esm/util/getRelativeX.js +7 -0
  818. package/esm/util/getStr.d.ts +6 -0
  819. package/esm/util/getStr.js +15 -0
  820. package/esm/util/highlights.d.ts +21 -0
  821. package/esm/util/highlights.js +100 -0
  822. package/esm/util/hooks.d.ts +160 -0
  823. package/esm/util/hooks.js +416 -0
  824. package/esm/util/htmlText.d.ts +13 -0
  825. package/esm/util/htmlText.js +66 -0
  826. package/esm/util/idMaker.d.ts +1 -1
  827. package/esm/util/idMaker.js +31 -18
  828. package/esm/util/index.d.ts +82 -268
  829. package/esm/util/index.js +136 -853
  830. package/esm/util/indexCandidates.d.ts +50 -0
  831. package/esm/util/indexCandidates.js +101 -0
  832. package/esm/util/installClearHoverOnSurfaceMove.d.ts +40 -0
  833. package/esm/util/installClearHoverOnSurfaceMove.js +41 -0
  834. package/esm/util/installFetch.d.ts +194 -0
  835. package/esm/util/installFetch.js +178 -0
  836. package/esm/util/installInitAutorun.d.ts +62 -0
  837. package/esm/util/installInitAutorun.js +107 -0
  838. package/esm/util/intervals.d.ts +20 -0
  839. package/esm/util/intervals.js +37 -0
  840. package/esm/util/io/RemoteFileWithRangeCache.d.ts +10 -11
  841. package/esm/util/io/RemoteFileWithRangeCache.js +10 -148
  842. package/esm/util/io/index.d.ts +39 -2
  843. package/esm/util/io/index.js +115 -12
  844. package/esm/util/isDataCurrent.d.ts +7 -0
  845. package/esm/util/isDataCurrent.js +9 -0
  846. package/esm/util/isWebWorker.js +1 -2
  847. package/esm/util/iupac.d.ts +4 -0
  848. package/esm/util/iupac.js +59 -0
  849. package/esm/util/jexl.js +141 -17
  850. package/esm/util/jexlFilters.d.ts +75 -0
  851. package/esm/util/jexlFilters.js +49 -0
  852. package/esm/util/jexlStrings.d.ts +22 -1
  853. package/esm/util/jexlStrings.js +21 -14
  854. package/esm/util/layouts/GranularRectLayout.d.ts +13 -25
  855. package/esm/util/layouts/GranularRectLayout.js +99 -356
  856. package/esm/util/layouts/index.d.ts +1 -7
  857. package/esm/util/layouts/index.js +2 -6
  858. package/esm/util/layouts/intervalUtils.d.ts +12 -1
  859. package/esm/util/layouts/intervalUtils.js +13 -31
  860. package/esm/util/layouts/placeRect.d.ts +50 -0
  861. package/esm/util/layouts/placeRect.js +97 -0
  862. package/esm/util/leadingEdgeAutorun.d.ts +40 -0
  863. package/esm/util/leadingEdgeAutorun.js +51 -0
  864. package/esm/util/librpc.d.ts +5 -2
  865. package/esm/util/librpc.js +6 -1
  866. package/esm/util/linkify.js +2 -0
  867. package/esm/util/locString.d.ts +72 -0
  868. package/esm/util/locString.js +178 -7
  869. package/esm/util/locStringsToRegions.d.ts +10 -0
  870. package/esm/util/locStringsToRegions.js +35 -0
  871. package/esm/util/localStorage.d.ts +36 -0
  872. package/esm/util/localStorage.js +137 -0
  873. package/esm/util/makeAssembly.d.ts +54 -0
  874. package/esm/util/makeAssembly.js +52 -0
  875. package/esm/util/makeTrackId.d.ts +14 -0
  876. package/esm/util/makeTrackId.js +14 -0
  877. package/esm/util/matchTrackId.d.ts +11 -0
  878. package/esm/util/matchTrackId.js +14 -0
  879. package/esm/util/measureText.d.ts +24 -0
  880. package/esm/util/measureText.js +51 -0
  881. package/esm/util/mst-reflection.d.ts +14 -4
  882. package/esm/util/mst-reflection.js +33 -32
  883. package/esm/util/mstUtils.d.ts +89 -0
  884. package/esm/util/mstUtils.js +122 -0
  885. package/esm/util/nanoid.d.ts +0 -4
  886. package/esm/util/nanoid.js +10 -20
  887. package/esm/util/numericUtils.d.ts +20 -0
  888. package/esm/util/numericUtils.js +127 -0
  889. package/esm/util/objectUtils.d.ts +2 -0
  890. package/esm/util/objectUtils.js +9 -0
  891. package/esm/util/offscreenCanvasPonyfill.d.ts +5 -4
  892. package/esm/util/offscreenCanvasPonyfill.js +5 -47
  893. package/esm/util/openDisplays.d.ts +23 -0
  894. package/esm/util/openDisplays.js +79 -0
  895. package/esm/util/openFeatureWidget.d.ts +33 -0
  896. package/esm/util/openFeatureWidget.js +64 -0
  897. package/esm/util/paintLayer.d.ts +32 -0
  898. package/esm/util/paintLayer.js +33 -0
  899. package/esm/util/parentWalk.d.ts +32 -0
  900. package/esm/util/parentWalk.js +84 -0
  901. package/esm/util/parseLineByLine.d.ts +45 -2
  902. package/esm/util/parseLineByLine.js +156 -15
  903. package/esm/util/parseMotifList.d.ts +17 -0
  904. package/esm/util/parseMotifList.js +69 -0
  905. package/esm/util/pluginStore.d.ts +113 -0
  906. package/esm/util/pluginStore.js +253 -0
  907. package/esm/util/pointerPresence.d.ts +5 -0
  908. package/esm/util/pointerPresence.js +21 -0
  909. package/esm/util/progress.d.ts +459 -0
  910. package/esm/util/progress.js +820 -0
  911. package/esm/util/range.d.ts +42 -1
  912. package/esm/util/range.js +59 -2
  913. package/esm/util/renameRegions.d.ts +21 -0
  914. package/esm/util/renameRegions.js +129 -0
  915. package/esm/util/renderToStaticMarkup.d.ts +2 -0
  916. package/esm/util/renderToStaticMarkup.js +50 -0
  917. package/esm/util/reorder.d.ts +35 -0
  918. package/esm/util/reorder.js +83 -0
  919. package/esm/util/resolveRowHeight.d.ts +27 -0
  920. package/esm/util/resolveRowHeight.js +30 -0
  921. package/esm/util/revlist.d.ts +13 -0
  922. package/esm/util/revlist.js +14 -0
  923. package/esm/util/rowStackGeometry.d.ts +66 -0
  924. package/esm/util/rowStackGeometry.js +70 -0
  925. package/esm/util/rpc.d.ts +16 -1
  926. package/esm/util/rpc.js +12 -1
  927. package/esm/util/rxjs.d.ts +14 -1
  928. package/esm/util/rxjs.js +39 -10
  929. package/esm/util/sameStrings.d.ts +16 -0
  930. package/esm/util/sameStrings.js +20 -0
  931. package/esm/util/scrollLatch.d.ts +4 -0
  932. package/esm/util/scrollLatch.js +59 -0
  933. package/esm/util/selectNamedRegions.d.ts +136 -0
  934. package/esm/util/selectNamedRegions.js +222 -0
  935. package/esm/util/seqUtils.d.ts +17 -0
  936. package/esm/util/seqUtils.js +80 -0
  937. package/esm/util/sessionServices.d.ts +29 -0
  938. package/esm/util/sessionServices.js +46 -0
  939. package/esm/util/sessionSharing.d.ts +38 -0
  940. package/esm/util/sessionSharing.js +154 -0
  941. package/esm/util/sessionStorage.d.ts +1 -0
  942. package/esm/util/sessionStorage.js +15 -0
  943. package/esm/util/setStackTraceLimit.d.ts +6 -0
  944. package/esm/util/setStackTraceLimit.js +20 -0
  945. package/esm/util/simpleFeature.d.ts +112 -4
  946. package/esm/util/simpleFeature.js +181 -29
  947. package/esm/util/springAnimate.d.ts +20 -0
  948. package/esm/util/springAnimate.js +80 -0
  949. package/esm/util/stats.d.ts +25 -2
  950. package/esm/util/stats.js +39 -8
  951. package/esm/util/stopToken.d.ts +207 -15
  952. package/esm/util/stopToken.js +403 -55
  953. package/esm/util/stringUtils.d.ts +5 -0
  954. package/esm/util/stringUtils.js +34 -0
  955. package/esm/util/svgColorProps.d.ts +7 -0
  956. package/esm/util/svgColorProps.js +28 -0
  957. package/esm/util/tabix.d.ts +120 -0
  958. package/esm/util/tabix.js +143 -0
  959. package/esm/util/tags.d.ts +2 -0
  960. package/esm/util/tags.js +5 -0
  961. package/esm/util/temporaryAssembly.d.ts +21 -0
  962. package/esm/util/temporaryAssembly.js +29 -0
  963. package/esm/util/tickLabels.d.ts +36 -0
  964. package/esm/util/tickLabels.js +45 -0
  965. package/esm/util/timeGate.d.ts +26 -0
  966. package/esm/util/timeGate.js +79 -0
  967. package/esm/util/trackConfigDelta.d.ts +84 -0
  968. package/esm/util/trackConfigDelta.js +190 -0
  969. package/esm/util/tracks.d.ts +352 -32
  970. package/esm/util/tracks.js +576 -194
  971. package/esm/util/tss-react/cssAndCx.js +11 -66
  972. package/esm/util/tss-react/index.d.ts +11 -2
  973. package/esm/util/tss-react/index.js +9 -2
  974. package/esm/util/tss-react/makeStyles.js +7 -4
  975. package/esm/util/tss-react/mergeClasses.js +1 -0
  976. package/esm/util/tss-react/tools/classnames.d.ts +3 -0
  977. package/esm/util/tss-react/tools/classnames.js +3 -0
  978. package/esm/util/tss-react/tools/getDependencyArrayRef.d.ts +18 -0
  979. package/esm/util/tss-react/tools/getDependencyArrayRef.js +19 -0
  980. package/esm/util/tss-react/types.d.ts +1 -1
  981. package/esm/util/tss-react/types.js +1 -6
  982. package/esm/util/types/ElementId.js +1 -1
  983. package/esm/util/types/data.d.ts +75 -0
  984. package/esm/util/types/data.js +41 -0
  985. package/esm/util/types/index.d.ts +358 -119
  986. package/esm/util/types/index.js +87 -64
  987. package/esm/util/types/isAny.d.ts +11 -0
  988. package/esm/util/types/isAny.js +1 -0
  989. package/esm/util/types/mst.d.ts +71 -47
  990. package/esm/util/types/mst.js +27 -22
  991. package/esm/util/types/predicate.d.ts +9 -0
  992. package/esm/util/types/predicate.js +1 -0
  993. package/esm/util/types/renderingServices.d.ts +16 -0
  994. package/esm/util/types/renderingServices.js +1 -0
  995. package/esm/util/types/services.d.ts +55 -0
  996. package/esm/util/types/services.js +10 -0
  997. package/esm/util/types/util.d.ts +8 -2
  998. package/esm/util/unzip.d.ts +1 -0
  999. package/esm/util/unzip.js +6 -0
  1000. package/esm/util/useEventCallback.d.ts +1 -0
  1001. package/esm/util/useEventCallback.js +16 -0
  1002. package/esm/util/useFeatureSequence.d.ts +13 -7
  1003. package/esm/util/useFeatureSequence.js +56 -78
  1004. package/esm/util/useFetch.d.ts +56 -0
  1005. package/esm/util/useFetch.js +188 -0
  1006. package/esm/util/useFetchPlugins.d.ts +12 -0
  1007. package/esm/util/useFetchPlugins.js +14 -0
  1008. package/esm/util/useMeasure.d.ts +11 -1
  1009. package/esm/util/useMeasure.js +20 -6
  1010. package/esm/util/usePanZoom.d.ts +75 -0
  1011. package/esm/util/usePanZoom.js +175 -0
  1012. package/esm/util/usePanelVirtualScroll.d.ts +37 -0
  1013. package/esm/util/usePanelVirtualScroll.js +42 -0
  1014. package/esm/util/usePointerDrag.d.ts +37 -0
  1015. package/esm/util/usePointerDrag.js +61 -0
  1016. package/esm/util/useRafCommit.d.ts +4 -0
  1017. package/esm/util/useRafCommit.js +50 -0
  1018. package/esm/util/useResizeDrag.d.ts +91 -0
  1019. package/esm/util/useResizeDrag.js +105 -0
  1020. package/esm/util/useRowVirtualScroll.d.ts +32 -0
  1021. package/esm/util/useRowVirtualScroll.js +63 -0
  1022. package/esm/util/useVirtualScrollWheel.d.ts +7 -0
  1023. package/esm/util/useVirtualScrollWheel.js +108 -0
  1024. package/esm/util/viewStatus.d.ts +58 -0
  1025. package/esm/util/viewStatus.js +20 -0
  1026. package/esm/util/virtualRange.d.ts +36 -0
  1027. package/esm/util/virtualRange.js +26 -0
  1028. package/esm/util/webStorage.d.ts +26 -0
  1029. package/esm/util/webStorage.js +92 -0
  1030. package/esm/util/wheelZoom.d.ts +59 -0
  1031. package/esm/util/wheelZoom.js +231 -0
  1032. package/esm/util/whenViewSettled.d.ts +27 -0
  1033. package/esm/util/whenViewSettled.js +28 -0
  1034. package/esm/util/withFeatureDetails.d.ts +34 -0
  1035. package/esm/util/withFeatureDetails.js +59 -0
  1036. package/package.json +240 -820
  1037. package/esm/ReExports/DataGrid.d.ts +0 -1
  1038. package/esm/ReExports/DataGrid.js +0 -1
  1039. package/esm/configuration/util.d.ts +0 -10
  1040. package/esm/configuration/util.js +0 -123
  1041. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
  1042. package/esm/data_adapters/util.d.ts +0 -1
  1043. package/esm/data_adapters/util.js +0 -6
  1044. package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
  1045. package/esm/pluggableElementTypes/GlyphType.js +0 -18
  1046. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
  1047. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
  1048. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
  1049. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
  1050. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
  1051. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
  1052. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
  1053. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
  1054. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
  1055. package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
  1056. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
  1057. package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
  1058. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
  1059. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
  1060. package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
  1061. package/esm/pluggableElementTypes/renderers/index.js +0 -6
  1062. package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
  1063. package/esm/pluggableElementTypes/renderers/util.js +0 -14
  1064. package/esm/rpc/baseRpcConfig.d.ts +0 -8
  1065. package/esm/rpc/baseRpcConfig.js +0 -10
  1066. package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
  1067. package/esm/rpc/mainThreadRpcConfig.js +0 -8
  1068. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  1069. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
  1070. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  1071. package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
  1072. package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  1073. package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
  1074. package/esm/rpc/methods/CoreRender.d.ts +0 -14
  1075. package/esm/rpc/methods/CoreRender.js +0 -40
  1076. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
  1077. package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
  1078. package/esm/rpc/methods/util.d.ts +0 -15
  1079. package/esm/rpc/methods/util.js +0 -7
  1080. package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
  1081. package/esm/rpc/webWorkerRpcConfig.js +0 -8
  1082. package/esm/ui/MenuButton.d.ts +0 -1
  1083. package/esm/ui/MenuButton.js +0 -1
  1084. package/esm/ui/MenuItems.d.ts +0 -15
  1085. package/esm/ui/MenuItems.js +0 -59
  1086. package/esm/ui/useEvent.d.ts +0 -1
  1087. package/esm/ui/useEvent.js +0 -10
  1088. package/esm/util/blobToDataURL.d.ts +0 -1
  1089. package/esm/util/blobToDataURL.js +0 -14
  1090. package/esm/util/compositeMap.d.ts +0 -11
  1091. package/esm/util/compositeMap.js +0 -59
  1092. package/esm/util/flatqueue/index.d.ts +0 -11
  1093. package/esm/util/flatqueue/index.js +0 -61
  1094. package/esm/util/layouts/BaseLayout.d.ts +0 -30
  1095. package/esm/util/layouts/MultiLayout.d.ts +0 -12
  1096. package/esm/util/layouts/MultiLayout.js +0 -40
  1097. package/esm/util/layouts/PileupLayout.d.ts +0 -41
  1098. package/esm/util/layouts/PileupLayout.js +0 -202
  1099. package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
  1100. package/esm/util/layouts/PrecomputedLayout.js +0 -71
  1101. package/esm/util/layouts/SceneGraph.d.ts +0 -31
  1102. package/esm/util/layouts/SceneGraph.js +0 -121
  1103. package/esm/util/makeAbortableReaction.d.ts +0 -3
  1104. package/esm/util/makeAbortableReaction.js +0 -47
  1105. package/esm/util/map-obj/index.d.ts +0 -13
  1106. package/esm/util/map-obj/index.js +0 -92
  1107. package/esm/util/nextTick.d.ts +0 -1
  1108. package/esm/util/nextTick.js +0 -3
  1109. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
  1110. package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
  1111. package/esm/util/offscreenCanvasUtils.d.ts +0 -12
  1112. package/esm/util/offscreenCanvasUtils.js +0 -19
  1113. package/esm/util/renderToAbstractCanvas.d.ts +0 -17
  1114. package/esm/util/renderToAbstractCanvas.js +0 -53
  1115. package/esm/util/transferables.d.ts +0 -2
  1116. package/esm/util/transferables.js +0 -35
  1117. package/esm/util/tss-react/mui/index.d.ts +0 -1
  1118. package/esm/util/tss-react/mui/index.js +0 -1
  1119. package/esm/util/tss-react/mui/mui.d.ts +0 -10
  1120. package/esm/util/tss-react/mui/mui.js +0 -5
  1121. package/esm/util/when.d.ts +0 -1
  1122. package/esm/util/when.js +0 -1
  1123. /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
  1124. /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
@@ -1,274 +1,88 @@
1
- import type React from 'react';
2
- import type { ParsedLocString } from './locString.ts';
3
- import type PluginManager from '../PluginManager.ts';
4
- import type { BaseBlock } from './blockTypes.ts';
5
- import type { Feature } from './simpleFeature.ts';
6
- import type { StopToken } from './stopToken.ts';
7
- import type { AbstractDisplayModel, AbstractSessionModel, AbstractTrackModel, AbstractViewModel, AssemblyManager, Region, TypeTestedByPredicate } from './types/index.ts';
8
- import type { Region as MUIRegion } from './types/mst.ts';
9
- import type { BaseOptions } from '../data_adapters/BaseAdapter/index.ts';
10
- import type { IAnyStateTreeNode, IStateTreeNode, Instance } from '@jbrowse/mobx-state-tree';
11
- import type { GenericFilehandle } from 'generic-filehandle2';
12
- export * from './types/index.ts';
13
- export * from './when.ts';
14
- export * from './range.ts';
15
- export * from './dedupe.ts';
16
- export * from './coarseStripHTML.ts';
17
- export * from './offscreenCanvasPonyfill.tsx';
18
- export * from './offscreenCanvasUtils.tsx';
19
- export * from './rpc.ts';
20
- export * from './crypto.ts';
21
- export declare function useDebounce<T>(value: T, delay: number): T;
22
- export declare function useWidthSetter(view: {
23
- setWidth: (arg: number) => void;
24
- }, padding: string): React.RefObject<HTMLDivElement | null>;
25
- export declare function useDebouncedCallback<T>(callback: (...args: T[]) => void, wait?: number): (...args: T[]) => void;
26
- export declare function findParentThat(node: IAnyStateTreeNode, predicate: (thing: IAnyStateTreeNode) => boolean): (object & IStateTreeNode<import("@jbrowse/mobx-state-tree").IAnyComplexType>) | IStateTreeNode<IAnyStateTreeNode>;
27
- export declare function springAnimate(fromValue: number, toValue: number, setValue: (value: number) => void, onFinish?: () => void, precision?: number, tension?: number, friction?: number, clamp?: boolean): (() => void)[];
28
- export declare function findParentThatIs<T extends (a: IAnyStateTreeNode) => boolean>(node: IAnyStateTreeNode, predicate: T): TypeTestedByPredicate<T>;
29
- export declare function getSession(node: IAnyStateTreeNode): AbstractSessionModel;
30
- export declare function getContainingView(node: IAnyStateTreeNode): AbstractViewModel;
31
- export declare function getContainingTrack(node: IAnyStateTreeNode): AbstractTrackModel;
32
- export declare function getContainingDisplay(node: IAnyStateTreeNode): AbstractDisplayModel;
33
- export declare function assembleLocString(region: ParsedLocString): string;
34
- export declare function assembleLocStringFast(region: ParsedLocString, cb?: (n: number) => string | number): string;
35
- export declare function compareLocs(locA: ParsedLocString, locB: ParsedLocString): number;
36
- export declare function compareLocStrings(a: string, b: string, isValidRefName: (refName: string, assemblyName?: string) => boolean): number;
37
- export declare function clamp(num: number, min: number, max: number): number;
38
- export declare function bpToPx(bp: number, { reversed, end, start, }: {
39
- start?: number;
40
- end?: number;
41
- reversed?: boolean;
42
- }, bpPerPx: number): number;
43
- export declare function radToDeg(radians: number): number;
44
- export declare function degToRad(degrees: number): number;
45
- export declare function polarToCartesian(rho: number, theta: number): [number, number];
46
- export declare function cartesianToPolar(x: number, y: number): [number, number];
47
- interface MinimalRegion {
48
- start: number;
49
- end: number;
50
- reversed?: boolean;
51
- }
52
- export declare function featureSpanPx(feature: Feature, region: MinimalRegion, bpPerPx: number): readonly [number, number];
53
- export declare function bpSpanPx(leftBp: number, rightBp: number, region: MinimalRegion, bpPerPx: number): readonly [number, number];
54
- export declare function calculateLayoutBounds(featureStart: number, featureEnd: number, layoutWidthBp: number, reversed?: boolean): [number, number];
55
- export declare function iterMap<T, U>(iter: Iterable<T>, func: (arg: T) => U, sizeHint?: number): U[];
56
- export declare function findLastIndex<T>(array: T[], predicate: (value: T, index: number, obj: T[]) => boolean): number;
57
- export declare function findLast<T>(array: T[], predicate: (value: T, index: number, obj: T[]) => boolean): T | undefined;
58
- export declare function renameRegionIfNeeded(refNameMap: Record<string, string> | undefined, region: Region | Instance<typeof MUIRegion>, getSeqAdapterRefName?: (refName: string) => string): Region & {
59
- originalRefName?: string;
60
- };
61
- export declare function renameRegionsIfNeeded<ARGTYPE extends {
62
- assemblyName?: string;
63
- regions?: Region[];
64
- stopToken?: string;
65
- adapterConfig: Record<string, unknown>;
66
- sessionId: string;
67
- statusCallback?: (arg: string) => void;
68
- }>(assemblyManager: AssemblyManager, args: ARGTYPE): Promise<ARGTYPE & {
69
- regions: (Region & {
70
- originalRefName?: string;
71
- })[];
72
- }>;
73
- export declare function minmax(a: number, b: number): readonly [number, number];
74
- export declare function shorten(name: string, max?: number, short?: number): string;
75
- export declare function shorten2(name: string, max?: number): string;
76
- export declare function stringify({ refName, coord, assemblyName, oob, }: {
77
- assemblyName?: string;
78
- coord: number;
79
- refName?: string;
80
- oob?: boolean;
81
- }, useAssemblyName?: boolean): string;
82
- export declare const isElectron: boolean;
83
- export declare const complementTable: Record<string, string>;
84
- export declare function revcom(str: string): string;
85
- export declare function reverse(str: string): string;
86
- export declare function complement(str: string): string;
87
- export declare const rIC: (((callback: IdleRequestCallback, options?: IdleRequestOptions) => number) & typeof requestIdleCallback) | ((cb: () => void) => void);
88
- export declare function measureText(str: unknown, fontSize?: number): number;
89
- export type Frame = 1 | 2 | 3 | -1 | -2 | -3;
90
- export declare function getFrame(start: number, end: number, strand: 1 | -1, phase: 0 | 1 | 2): Frame;
91
- export declare const defaultStarts: string[];
92
- export declare const defaultStops: string[];
93
- export declare const defaultCodonTable: {
94
- TCA: string;
95
- TCC: string;
96
- TCG: string;
97
- TCT: string;
98
- TTC: string;
99
- TTT: string;
100
- TTA: string;
101
- TTG: string;
102
- TAC: string;
103
- TAT: string;
104
- TAA: string;
105
- TAG: string;
106
- TGC: string;
107
- TGT: string;
108
- TGA: string;
109
- TGG: string;
110
- CTA: string;
111
- CTC: string;
112
- CTG: string;
113
- CTT: string;
114
- CCA: string;
115
- CCC: string;
116
- CCG: string;
117
- CCT: string;
118
- CAC: string;
119
- CAT: string;
120
- CAA: string;
121
- CAG: string;
122
- CGA: string;
123
- CGC: string;
124
- CGG: string;
125
- CGT: string;
126
- ATA: string;
127
- ATC: string;
128
- ATT: string;
129
- ATG: string;
130
- ACA: string;
131
- ACC: string;
132
- ACG: string;
133
- ACT: string;
134
- AAC: string;
135
- AAT: string;
136
- AAA: string;
137
- AAG: string;
138
- AGC: string;
139
- AGT: string;
140
- AGA: string;
141
- AGG: string;
142
- GTA: string;
143
- GTC: string;
144
- GTG: string;
145
- GTT: string;
146
- GCA: string;
147
- GCC: string;
148
- GCG: string;
149
- GCT: string;
150
- GAC: string;
151
- GAT: string;
152
- GAA: string;
153
- GAG: string;
154
- GGA: string;
155
- GGC: string;
156
- GGG: string;
157
- GGT: string;
158
- };
159
- export declare function generateCodonTable(table: any): Record<string, string>;
160
- export declare function updateStatus<U>(msg: string, cb: ((arg: string) => void) | undefined, fn: () => U | Promise<U>): Promise<U>;
161
- export declare function updateStatus2<U>(msg: string, cb: (arg: string) => void, stopToken: StopToken | undefined, fn: () => U | Promise<U>): Promise<U>;
162
- export declare function hashCode(str: string): number;
163
- export declare function objectHash(obj: Record<string, any>): string;
164
- interface VirtualOffset {
165
- blockPosition: number;
166
- }
167
- interface Block {
168
- minv: VirtualOffset;
169
- maxv: VirtualOffset;
170
- }
171
- export declare function bytesForRegions(regions: Region[], index: {
172
- blocksForRange: (ref: string, start: number, end: number) => Promise<Block[]>;
173
- }): Promise<number>;
174
- export interface ViewSnap {
175
- bpPerPx: number;
176
- interRegionPaddingWidth: number;
177
- minimumBlockWidth: number;
178
- width: number;
179
- offsetPx: number;
180
- staticBlocks: {
181
- contentBlocks: BaseBlock[];
182
- blocks: BaseBlock[];
183
- };
184
- displayedRegions: (IStateTreeNode & {
185
- start: number;
186
- end: number;
187
- refName: string;
188
- reversed?: boolean;
189
- assemblyName: string;
190
- })[];
191
- }
1
+ import type { FileLocation } from './types/data.ts';
2
+ export { capitalizeFirst, pluralize, shorten, shorten2, truncateMiddle, } from './stringUtils.ts';
3
+ export { formatBytes } from './formatBytes.ts';
4
+ export { getFillProps, getStrokeProps, stripAlpha } from './svgColorProps.ts';
5
+ export { fetchAndMaybeUnzip, fetchAndMaybeUnzipText, isGzip, } from './fetchAndMaybeUnzip.ts';
6
+ export { type AbstractDisplayModel, type AbstractMenuManager, type AbstractRootModel, type AbstractSessionModel, type AbstractTrackModel, type AbstractViewContainer, type AbstractViewModel, type AnimationMode, type AnyReactComponentType, type AppRootModel, type AssemblyHost, type AssemblyManager, type AugmentedRegion, AuthNeededError, type BasePlugin, type BlobLocation, type ClassReturnedBy, type ConnectionInstance, type DialogComponentType, type DialogHost, type DrawerPosition, type FileHandleLocation, type FileLocation, type InstanceTypeRestrictive, type JBrowsePlugin, type JBrowsePluginVersion, type LocalPathLocation, type NoAssemblyRegion, type NotificationLevel, type NotificationSink, type PaletteHost, type PreBlobLocation, type PreFileHandleLocation, type PreFileLocation, type PreLocalPathLocation, type PreUriLocation, type Region, type RenderingServices, type RpcCaller, type RpcHost, type RootModelWithInternetAccounts, type SelectionContainer, type SessionServices, type SessionWithAddAssembly, type SessionWithAddSessionTrack, type SessionWithPublishTrackConf, type SessionWithConfigEditing, type SessionWithConnectionEditing, type SessionWithConnections, type SessionWithDeleteTrackConf, type SessionWithDrawerWidgets, type SessionWithFocusedViewAndDrawerWidgets, type SessionWithPermanentPlugins, type SessionWithSessionPlugins, type SessionWithShareURL, type SessionWithViewReplacement, type SessionWithWidgets, type SnackAction, type TrackActionView, type TrackCatalog, type TrackContainer, type TrackViewModel, type TypeTestedByPredicate, type UriLocation, type Widget, type WidgetMap, addOrReplaceView, canReplaceView, isAbstractMenuManager, isAppRootModel, isAuthNeededException, isBlobLocation, isDisplayModel, isFileHandleLocation, isLocalPathLocation, isRootModelWithInternetAccounts, isSelectionContainer, isSessionModel, isSessionServices, isSessionModelWithConfigEditing, isSessionModelWithConnectionEditing, isSessionModelWithConnections, isSessionModelWithWidgets, isSessionWithAddAssembly, isSessionWithAddSessionTrack, isSessionWithAddTracks, isSessionWithPublishTrackConf, isSessionWithDeleteTrackConf, isSessionWithPermanentPlugins, isSessionWithSessionPlugins, isSessionWithSessionTracks, isSessionWithShareURL, isSessionWithViewReplacement, isTrackModel, isTrackViewModel, isUriLocation, isViewContainer, isViewModel, } from './types/index.ts';
7
+ export { type PluginUpdate, type ResolvedPlugin, type StorePluginFailure, type StorePluginResolution, getPluginUpdate, installablePlugins, installedVersionFromUrl, isPluginInstalled, resolvePlugin, resolveStorePluginRefs, resolveStoreRefs, } from './pluginStore.ts';
8
+ export { type PhaseFailure, type ProgressReporter, type RpcStatus, type StatusCallback, type StatusPhase, type StatusStream, type StatusWindow, type StatusWithProgress, createProgressReporter, createStatusFanOut, createStatusWindow, downloadStatus, progressLabel, statusFraction, statusMessageText, statusProgressLabel, statusReading, statusSource, throttleStatusEmits, updateStatus, withProgress, } from './progress.ts';
9
+ export { calculateRedispatchRange, doesIntersect2, intersection2, } from './range.ts';
10
+ export { dedupe } from './dedupe.ts';
11
+ export { MAX_GLOB_REGIONS, matchRefNames, parseRegionNames, resolveNamedRegions, selectNamedRegions, } from './selectNamedRegions.ts';
12
+ export type { RefNameMatchSource } from './selectNamedRegions.ts';
13
+ export { isValidTag, tagRegex } from './tags.ts';
14
+ export { formatRelativeTime } from './formatRelativeTime.ts';
15
+ export { fetchJson } from './fetchJson.ts';
16
+ export { type EncodedSessionParam, type SessionShareMode, ENCODED_PREFIX, JSON_PREFIX, SHARE_PREFIX, b64PadSuffix, encodeSessionParam, fromUrlSafeB64, readSessionFromDynamo, shareEndpoint, toUrlSafeB64, } from './sessionSharing.ts';
17
+ export { coarseStripHTML } from './coarseStripHTML.ts';
18
+ export { measureText, measuredFont } from './measureText.ts';
19
+ export type { MeasuredFont } from './measureText.ts';
20
+ export { createScrollLatch } from './scrollLatch.ts';
21
+ export { MAX_ZOOM_RATE_PER_MS, SCROLL_ZOOM_FACTOR_DIVISOR, ZOOM_ACTIVE_WINDOW_MS, accumulateScroll, applyZoomAccum, getZoomNormalizer, isActivelyZooming, normalizeWheelDelta, wheelFrameElapsedMs, wheelZoomAccum, } from './wheelZoom.ts';
22
+ export { avg, clamp, getDisplayStr, getNumberGrouping, max, maxFinite, min, minmax, polarToCartesian, radToDeg, reducePrecision, setNumberGrouping, sum, toLocale, } from './numericUtils.ts';
23
+ export { type MinimalRegion, bpSpanPx, bpToPx, bytesForRegions, featureSpanPx, getBpDisplayStr, getTickDisplayStr, parseBpString, } from './bpUtils.ts';
24
+ export { type BasicFeature, gatherOverlaps, mergeIntervals, } from './intervals.ts';
25
+ export { clampToContig } from './clampToContig.ts';
26
+ export { animationAllowed } from './animationAllowed.ts';
27
+ export { springAnimate } from './springAnimate.ts';
28
+ export { localStorageAvailable, localStorageGetBoolean, localStorageGetItem, localStorageGetJSON, localStorageGetNumber, localStorageGetStringArray, localStorageRemoveItem, localStorageSetBoolean, localStorageSetItem, localStorageSetJSON, localStorageSetNumber, notifyLocalStorageKey, subscribeToLocalStorageKey, } from './localStorage.ts';
29
+ export { renameRegionIfNeeded, renameRegionsIfNeeded } from './renameRegions.ts';
30
+ export { addAndShowTrack } from './addAndShowTrack.ts';
31
+ export { addTrackFromWidget, containerDisplaysAssembly, finishAddTrack, type AddTrackWidgetSelf, type AddTrackWorkflowModel, } from './addTrackFromWidget.ts';
32
+ export { namesTemporaryAssembly } from './temporaryAssembly.ts';
33
+ export { makeTrackId } from './makeTrackId.ts';
34
+ export { matchTrackId } from './matchTrackId.ts';
35
+ export { drawImageOntoCanvasContext } from './offscreenCanvasPonyfill.ts';
36
+ export { indexedDBAvailable, isElectron, isNode, rIC } from './environment.ts';
37
+ export { isWebWorker } from './isWebWorker.ts';
38
+ export { sessionStorageAvailable, sessionStorageGetItem, sessionStorageRemoveItem, sessionStorageSetItem, } from './sessionStorage.ts';
39
+ export { isObject } from './objectUtils.ts';
40
+ export { openPromotableDisplays } from './openDisplays.ts';
41
+ export { type ReorderDirection, applyOrderWithin, reorder, reorderWithin, } from './reorder.ts';
42
+ export { getStr } from './getStr.ts';
43
+ export { downloadPhase, getLocationUri, resolveUri } from './getLocationUri.ts';
44
+ export { measureGridWidth, resolveSelectedIds } from './dataGridUtils.ts';
45
+ export { isRpcResult } from './rpc.ts';
46
+ export { aesDecrypt, aesEncrypt, sha256, sha256Base64, sha256Base64Url, toBase64, toBase64Url, } from './crypto.ts';
47
+ export { type FeatureWidgetTypeRef, notifyFeatureDetailsMiss, openFeatureWidget, } from './openFeatureWidget.ts';
48
+ export { withFeatureDetails } from './withFeatureDetails.ts';
49
+ export { canonicalizeViewRefName, findParentThat, findParentThatIs, getAssemblyHost, getContainingDisplay, getContainingTrack, getContainingView, getEnv, getRenderingServices, getSession, hashCode, objectHash, } from './mstUtils.ts';
50
+ export { getDialogHost, getNotificationSink, getPaletteHost, getRpcHost, getSessionServices, } from './sessionServices.ts';
51
+ /**
52
+ * Convert a browser File (from a drop zone or file input) into a FileLocation:
53
+ * a native local path under electron, or an in-memory blob location otherwise.
54
+ */
55
+ export declare function fileToLocation(file: File): FileLocation;
56
+ export { type Frame, complement, complementTable, defaultStarts, getFrame, revcom, reverse, stitch, } from './seqUtils.ts';
57
+ export { revlist } from './revlist.ts';
58
+ export { useCreateOnce, useDebounce, useFinalUnmount, useLocalStorage, useWidthSetter, } from './hooks.ts';
59
+ export { renderToStaticMarkup } from './renderToStaticMarkup.ts';
60
+ export { codonTable, defaultCodonTable, generateCodonTable, } from './geneticCodes.ts';
61
+ export { IUPAC_MOTIF_REGEX, isPalindromic, iupacToRegex, reverseComplementIupac, } from './iupac.ts';
62
+ export { type MotifListParse, type MotifParseError, type ParsedMotif, parseMotifList, } from './parseMotifList.ts';
192
63
  export declare function isSupportedIndexingAdapter(type?: string): boolean;
193
- export declare function getBpDisplayStr(total: number): string;
194
- export declare function reducePrecision(s: number, n?: number): string;
195
- export declare function getProgressDisplayStr(current: number, total: number): string;
196
- export declare function toLocale(n: number): string;
197
- export declare function getTickDisplayStr(totalBp: number, bpPerPx: number): string;
198
- export declare function getLayoutId({ sessionId, trackInstanceId, }: {
199
- sessionId: string;
200
- trackInstanceId: string;
201
- }): string;
202
- export declare function getStatsId({ sessionId, trackInstanceId, }: {
203
- sessionId: string;
204
- trackInstanceId: string;
205
- }): string;
206
- export declare function useLocalStorage<T>(key: string, initialValue: T, enabled?: boolean): readonly [T, (value: T | ((val: T) => T)) => void];
207
- export declare function getUriLink(value: {
208
- uri: string;
209
- baseUri?: string;
210
- }): string;
211
- export declare function getStr(obj: unknown): string;
212
- export declare function linkify(s: string): string;
213
- export declare function measureGridWidth(elements: unknown[], args?: {
214
- minWidth?: number;
215
- fontSize?: number;
216
- maxWidth?: number;
217
- padding?: number;
218
- stripHTML?: boolean;
219
- }): number;
220
- export declare function getEnv(obj: any): {
221
- pluginManager: PluginManager;
222
- };
223
- export declare function localStorageGetItem(item: string): string | null | undefined;
224
- export declare function localStorageSetItem(str: string, item: string): void;
225
- export declare function max(arr: Iterable<number>, init?: number): number;
226
- export declare function min(arr: Iterable<number>, init?: number): number;
227
- export declare function sum(arr: Iterable<number>): number;
228
- export declare function avg(arr: number[]): number;
229
64
  export declare function groupBy<T>(array: Iterable<T>, predicate: (v: T) => string): Record<string, T[]>;
230
65
  export declare function notEmpty<T>(value: T | null | undefined): value is T;
231
- export declare function mergeIntervals<T extends {
232
- start: number;
233
- end: number;
234
- }>(intervals: T[], w?: number): T[];
235
- export interface BasicFeature {
236
- end: number;
237
- start: number;
238
- refName: string;
239
- }
240
- export declare function gatherOverlaps<T extends BasicFeature>(regions: T[], w?: number): T[];
241
- export declare function stripAlpha(str: string): string;
242
- export declare function getStrokeProps(str: string): {
243
- strokeOpacity: number;
244
- stroke: string;
245
- } | {
246
- strokeOpacity?: undefined;
247
- stroke?: undefined;
248
- };
249
- export declare function getFillProps(str: string): {
250
- fillOpacity: number;
251
- fill: string;
252
- } | {
253
- fillOpacity?: undefined;
254
- fill?: undefined;
255
- };
256
- export declare function renderToStaticMarkup(node: React.ReactElement): string;
257
- export declare function isGzip(buf: Uint8Array): boolean;
258
- export declare function fetchAndMaybeUnzip(loc: GenericFilehandle, opts?: BaseOptions): Promise<any>;
259
- export declare function fetchAndMaybeUnzipText(loc: GenericFilehandle, opts?: BaseOptions): Promise<string>;
260
- export declare function isObject(x: unknown): x is Record<string | symbol | number, unknown>;
261
- export declare function localStorageGetNumber(key: string, defaultVal: number): number;
262
- export declare function localStorageGetBoolean(key: string, defaultVal: boolean): boolean;
263
- export declare function localStorageSetBoolean(key: string, value: boolean): void;
264
66
  export declare function testAdapter(fileName: string, regex: RegExp, adapterHint: string | undefined, expected: string): boolean;
265
67
  export { type Feature, type SimpleFeatureSerialized, type SimpleFeatureSerializedNoId, default as SimpleFeature, isFeature, } from './simpleFeature.ts';
266
- export { blobToDataURL } from './blobToDataURL.ts';
267
- export { makeAbortableReaction } from './makeAbortableReaction.ts';
268
- export * from './aborting.ts';
269
- export * from './linkify.ts';
270
- export * from './locString.ts';
271
- export * from './stopToken.ts';
272
- export * from './tracks.ts';
273
- export * from './fileHandleStore.ts';
68
+ export { saveAs } from './FileSaver/index.ts';
69
+ export { type SaveSvgAsImageOptions, saveSvgAsImage, svgHtmlToPngBlob, } from '../svg/saveSvgAsImage.ts';
70
+ export { type ActiveFetch, type StatusChannel, type StatusReporter, createStatusChannel, createStopTokenRotation, } from './createStopTokenRotation.ts';
71
+ export { createSharedSetup } from './cachedSetup.ts';
72
+ export { isDataCurrent } from './isDataCurrent.ts';
73
+ export { handleFetchError, isAbortException, makeAbortError, } from './aborting.ts';
74
+ export { linkify } from './linkify.ts';
75
+ export { locStringsToRegions } from './locStringsToRegions.ts';
76
+ export type { RefNameSource } from './locStringsToRegions.ts';
77
+ export { type ParsedLocString, UnknownRefNameError, assembleLocString, assembleLocStringRaw, assembleLocStrings, compareLocStrings, compareLocs, parseLocString, parseLocStringOneBased, stringify, } from './locString.ts';
78
+ export { type LastStopTokenCheck, type StopToken, type StopTokenChecker, type StopTokenSignal, checkStopToken, checkStopTokenThrottled, createStopToken, createStopTokenChecker, hasSharedArrayBuffer, isStopToken, isStopped, markStopTokenStopped, registerStopTokenBroadcaster, stopStopToken, stopTokenSignal, withStopTokenCheck, withStopTokenSignal, } from './stopToken.ts';
79
+ export { type AddTrackComponentModel, type AddTrackComponentProps, adapterNeedsAddTrackComponent, addAddTrackComponent, } from './addTrackComponent.ts';
80
+ export { adapterConfigFromSpec } from './formatGuessers.ts';
81
+ export { type AdapterConfig, type AdapterGuesser, type LooseTrackInput, type TrackTypeGuesser, UNKNOWN, UNSUPPORTED, addAdapterGuesser, addTrackTypeGuesser, clearFileFromCache, ensureFileHandleReady, expandLooseTrackConfig, findFileHandleIds, generateUnknownTrackConf, generateUnsupportedTrackConf, getBlob, getBlobMap, getConfAssemblyNames, getFileFromCache, getFileName, getRpcSessionId, getTrackAssemblyNames, getTrackName, guessAdapter, guessTrackConf, guessTrackType, hasFileHandlesInCache, hideTrackGeneric, isLooseTrackConfig, makeIndex, makeIndexType, restoreFileHandles, restoreFileHandlesFromSnapshot, setBlobMap, setFileInCache, showTrackGeneric, storeBlobLocation, storeFileHandleLocation, stripFileExtension, stripTrackIds, toggleTrackGeneric, } from './tracks.ts';
82
+ export { getFileHandle, isFileSystemAccessSupported, storeFileHandle, verifyPermission, } from './fileHandleStore.ts';
274
83
  export { IntervalTree } from './IntervalTree.ts';
84
+ export { cmpStr } from './cmpStr.ts';
85
+ export { diffTrackConfig, flattenTrackConfigDelta, mergeTrackConfig, } from './trackConfigDelta.ts';
86
+ export type { TrackConfigChange } from './trackConfigDelta.ts';
87
+ export { BEZIER_CONNECTOR_MAX_REACH_PX, bezierConnectorPath, } from './bezierConnector.ts';
88
+ export { type AlignmentData, type DiagonalizationResult, diagonalizeRegions, } from './diagonalizeRegions.ts';