@jbrowse/core 4.2.1 → 5.0.0-beta.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1124) hide show
  1. package/README.md +783 -0
  2. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.d.ts +13 -3
  3. package/esm/BaseFeatureWidget/BaseFeatureDetail/ArrayValue.js +33 -22
  4. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.d.ts +8 -3
  5. package/esm/BaseFeatureWidget/BaseFeatureDetail/Attributes.js +117 -19
  6. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.d.ts +2 -8
  7. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseAttributes.js +4 -4
  8. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.d.ts +1 -1
  9. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCard.js +2 -2
  10. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.d.ts +1 -1
  11. package/esm/BaseFeatureWidget/BaseFeatureDetail/BaseCoreDetails.js +4 -4
  12. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.d.ts +1 -1
  13. package/esm/BaseFeatureWidget/BaseFeatureDetail/BasicValue.js +12 -5
  14. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.d.ts +1 -1
  15. package/esm/BaseFeatureWidget/BaseFeatureDetail/CoreDetails.js +28 -17
  16. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.d.ts +1 -1
  17. package/esm/BaseFeatureWidget/BaseFeatureDetail/DataGridDetails.js +19 -40
  18. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.d.ts +6 -4
  19. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureDetails.js +46 -30
  20. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.d.ts +20 -0
  21. package/esm/BaseFeatureWidget/BaseFeatureDetail/FeatureWash.js +66 -0
  22. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.d.ts +1 -1
  23. package/esm/BaseFeatureWidget/BaseFeatureDetail/FieldName.js +2 -2
  24. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.d.ts +3 -0
  25. package/esm/BaseFeatureWidget/BaseFeatureDetail/Formatter.js +17 -0
  26. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.d.ts +1 -1
  27. package/esm/BaseFeatureWidget/BaseFeatureDetail/Position.js +3 -9
  28. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.d.ts +3 -2
  29. package/esm/BaseFeatureWidget/BaseFeatureDetail/SimpleField.js +3 -3
  30. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.d.ts +3 -2
  31. package/esm/BaseFeatureWidget/BaseFeatureDetail/UriField.js +7 -14
  32. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.d.ts +2 -1
  33. package/esm/BaseFeatureWidget/BaseFeatureDetail/index.js +19 -13
  34. package/esm/BaseFeatureWidget/BaseFeatureDetail/types.d.ts +5 -4
  35. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.d.ts +8 -1
  36. package/esm/BaseFeatureWidget/BaseFeatureDetail/util.js +32 -10
  37. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.d.ts +18 -0
  38. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceBody.js +10 -0
  39. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.d.ts +7 -4
  40. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceContents.js +62 -24
  41. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.d.ts +10 -5
  42. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeatureDetails.js +64 -41
  43. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.d.ts +1 -1
  44. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceFeaturePanel.js +17 -8
  45. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.d.ts +6 -0
  46. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceLegend.js +19 -0
  47. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.d.ts +5 -4
  48. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequenceName.js +15 -18
  49. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.d.ts +1 -1
  50. package/esm/BaseFeatureWidget/SequenceFeatureDetails/SequencePanel.js +33 -17
  51. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.d.ts +3 -3
  52. package/esm/BaseFeatureWidget/SequenceFeatureDetails/consts.js +7 -3
  53. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.d.ts +11 -0
  54. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/FeatureSequenceDialog.js +29 -0
  55. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.d.ts +1 -1
  56. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/HelpDialog.js +4 -6
  57. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.d.ts +18 -6
  58. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceDialog.js +11 -29
  59. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.d.ts +9 -2
  60. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceFeatureMenu.js +63 -58
  61. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.d.ts +7 -3
  62. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SequenceTypeSelector.js +38 -51
  63. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.d.ts +1 -1
  64. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/SettingsDialog.js +19 -27
  65. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.d.ts +6 -0
  66. package/esm/BaseFeatureWidget/SequenceFeatureDetails/dialogs/TranscriptSelector.js +18 -0
  67. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.d.ts +12 -0
  68. package/esm/BaseFeatureWidget/SequenceFeatureDetails/featureTypeUtil.js +97 -0
  69. package/esm/BaseFeatureWidget/SequenceFeatureDetails/index.js +1 -1
  70. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.d.ts +50 -63
  71. package/esm/BaseFeatureWidget/SequenceFeatureDetails/model.js +62 -59
  72. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.d.ts +21 -0
  73. package/esm/BaseFeatureWidget/SequenceFeatureDetails/panelAssemblyName.js +24 -0
  74. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.d.ts +5 -3
  75. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDNASequence.js +93 -75
  76. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.d.ts +1 -1
  77. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/CDSSequence.js +4 -11
  78. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.d.ts +5 -2
  79. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/GenomicSequence.js +21 -48
  80. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.d.ts +8 -0
  81. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/PlainSequence.js +20 -0
  82. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.d.ts +6 -3
  83. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/ProteinSequence.js +33 -13
  84. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.d.ts +7 -4
  85. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/SequenceDisplay.js +67 -11
  86. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.d.ts +14 -0
  87. package/esm/BaseFeatureWidget/SequenceFeatureDetails/seqtypes/renderSequenceSegments.js +42 -0
  88. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/DLGAP3.d.ts +1 -1
  89. package/esm/BaseFeatureWidget/SequenceFeatureDetails/test_data/NCDN.d.ts +7 -7
  90. package/esm/BaseFeatureWidget/SequenceFeatureDetails/types.d.ts +8 -1
  91. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.d.ts +9 -9
  92. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceData.js +28 -44
  93. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.d.ts +23 -0
  94. package/esm/BaseFeatureWidget/SequenceFeatureDetails/useSequenceFetch.js +31 -0
  95. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.d.ts +90 -1
  96. package/esm/BaseFeatureWidget/SequenceFeatureDetails/util.js +145 -23
  97. package/esm/BaseFeatureWidget/configSchema.js +1 -1
  98. package/esm/BaseFeatureWidget/formatDetails.d.ts +38 -0
  99. package/esm/BaseFeatureWidget/formatDetails.js +103 -0
  100. package/esm/BaseFeatureWidget/index.d.ts +3 -1
  101. package/esm/BaseFeatureWidget/index.js +2 -2
  102. package/esm/BaseFeatureWidget/stateModelFactory.d.ts +80 -62
  103. package/esm/BaseFeatureWidget/stateModelFactory.js +128 -29
  104. package/esm/BaseFeatureWidget/types.d.ts +4 -3
  105. package/esm/BaseFeatureWidget/util.d.ts +4 -29
  106. package/esm/BaseFeatureWidget/util.js +20 -84
  107. package/esm/CorePlugin.js +11 -6
  108. package/esm/PhasedScheduler.d.ts +4 -2
  109. package/esm/PhasedScheduler.js +18 -2
  110. package/esm/Plugin.d.ts +6 -1
  111. package/esm/Plugin.js +7 -0
  112. package/esm/PluginLoader.d.ts +40 -40
  113. package/esm/PluginLoader.js +166 -82
  114. package/esm/PluginManager.d.ts +368 -55
  115. package/esm/PluginManager.js +326 -85
  116. package/esm/ReExports/BaseFeatureDetails.js +7 -6
  117. package/esm/ReExports/MuiDataGridReExports.d.ts +2 -2
  118. package/esm/ReExports/MuiDataGridReExports.js +58 -130
  119. package/esm/ReExports/MuiReExports.d.ts +3 -134
  120. package/esm/ReExports/MuiReExports.js +43 -16
  121. package/esm/ReExports/MuiStylesReExports.d.ts +66 -0
  122. package/esm/ReExports/MuiStylesReExports.js +55 -0
  123. package/esm/ReExports/index.js +1 -1
  124. package/esm/ReExports/lazify.d.ts +2 -2
  125. package/esm/ReExports/lazify.js +16 -3
  126. package/esm/ReExports/list.js +54 -229
  127. package/esm/ReExports/modules.js +84 -65
  128. package/esm/ReExports/muiComponentNames.d.ts +18 -0
  129. package/esm/ReExports/muiComponentNames.js +130 -0
  130. package/esm/ReExports/publicUtil.d.ts +1 -0
  131. package/esm/ReExports/publicUtil.js +28 -0
  132. package/esm/ReExports/registry.d.ts +2 -0
  133. package/esm/ReExports/registry.js +28 -0
  134. package/esm/TextSearch/BaseResults.d.ts +20 -21
  135. package/esm/TextSearch/BaseResults.js +8 -33
  136. package/esm/TextSearch/TextSearchManager.d.ts +14 -34
  137. package/esm/TextSearch/TextSearchManager.js +87 -34
  138. package/esm/assemblyManager/assembly.d.ts +307 -34
  139. package/esm/assemblyManager/assembly.js +551 -262
  140. package/esm/assemblyManager/assemblyAdapters.d.ts +12 -0
  141. package/esm/assemblyManager/assemblyAdapters.js +18 -0
  142. package/esm/assemblyManager/assemblyConfigSchema.d.ts +192 -17
  143. package/esm/assemblyManager/assemblyConfigSchema.js +213 -19
  144. package/esm/assemblyManager/assemblyManager.d.ts +711 -303
  145. package/esm/assemblyManager/assemblyManager.js +351 -46
  146. package/esm/assemblyManager/expandAssemblyConfigShorthand.d.ts +32 -0
  147. package/esm/assemblyManager/expandAssemblyConfigShorthand.js +85 -0
  148. package/esm/assemblyManager/geneticCodes.d.ts +21 -0
  149. package/esm/assemblyManager/geneticCodes.js +47 -0
  150. package/esm/assemblyManager/getSequenceAdapterConfig.d.ts +9 -0
  151. package/esm/assemblyManager/getSequenceAdapterConfig.js +12 -0
  152. package/esm/assemblyManager/index.d.ts +1 -1
  153. package/esm/assemblyManager/index.js +2 -2
  154. package/esm/assemblyManager/loadRefNameMap.d.ts +5 -0
  155. package/esm/assemblyManager/loadRefNameMap.js +80 -0
  156. package/esm/assemblyManager/refNameColors.d.ts +1 -0
  157. package/esm/assemblyManager/refNameColors.js +32 -0
  158. package/esm/assemblyManager/refNameMaps.d.ts +26 -0
  159. package/esm/assemblyManager/refNameMaps.js +87 -0
  160. package/esm/assemblyManager/refNameMismatch.d.ts +54 -0
  161. package/esm/assemblyManager/refNameMismatch.js +66 -0
  162. package/esm/checkPlugins.d.ts +11 -0
  163. package/esm/checkPlugins.js +77 -0
  164. package/esm/configuration/configurationSchema.d.ts +154 -19
  165. package/esm/configuration/configurationSchema.js +359 -138
  166. package/esm/configuration/configurationSlot.d.ts +283 -30
  167. package/esm/configuration/configurationSlot.js +205 -226
  168. package/esm/configuration/formatAboutConfigSchema.d.ts +55 -0
  169. package/esm/configuration/formatAboutConfigSchema.js +58 -0
  170. package/esm/configuration/formatDetailsConfigSchema.d.ts +80 -0
  171. package/esm/configuration/formatDetailsConfigSchema.js +90 -0
  172. package/esm/configuration/fullConfSnapshot.d.ts +28 -0
  173. package/esm/configuration/fullConfSnapshot.js +66 -0
  174. package/esm/configuration/getConf.d.ts +88 -0
  175. package/esm/configuration/getConf.js +74 -0
  176. package/esm/configuration/index.d.ts +19 -3
  177. package/esm/configuration/index.js +19 -2
  178. package/esm/configuration/mergeFormatCallbacks.d.ts +15 -0
  179. package/esm/configuration/mergeFormatCallbacks.js +24 -0
  180. package/esm/configuration/promotableDefaults.d.ts +199 -0
  181. package/esm/configuration/promotableDefaults.js +326 -0
  182. package/esm/configuration/promotablePin.d.ts +55 -0
  183. package/esm/configuration/promotableResolve.d.ts +108 -0
  184. package/esm/configuration/promotableResolve.js +117 -0
  185. package/esm/configuration/promotableSlots.d.ts +12 -0
  186. package/esm/configuration/promotableSlots.js +45 -0
  187. package/esm/configuration/readConfObject.d.ts +56 -0
  188. package/esm/configuration/readConfObject.js +161 -0
  189. package/esm/configuration/schemaRegistry.d.ts +35 -0
  190. package/esm/configuration/schemaRegistry.js +50 -0
  191. package/esm/configuration/schemaTypes.d.ts +23 -0
  192. package/esm/configuration/schemaTypes.js +94 -0
  193. package/esm/configuration/slotFacade.d.ts +82 -0
  194. package/esm/configuration/slotFacade.js +89 -0
  195. package/esm/configuration/slotShape.d.ts +12 -0
  196. package/esm/configuration/slotShape.js +84 -0
  197. package/esm/configuration/slotValueUtils.d.ts +17 -0
  198. package/esm/configuration/slotValueUtils.js +25 -0
  199. package/esm/configuration/tabixIndexFields.d.ts +44 -0
  200. package/esm/configuration/tabixIndexFields.js +45 -0
  201. package/esm/configuration/tabixShorthand.d.ts +34 -0
  202. package/esm/configuration/tabixShorthand.js +45 -0
  203. package/esm/configuration/types.d.ts +170 -7
  204. package/esm/data_adapters/BaseAdapter/BaseAdapter.d.ts +24 -10
  205. package/esm/data_adapters/BaseAdapter/BaseAdapter.js +23 -15
  206. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.d.ts +120 -7
  207. package/esm/data_adapters/BaseAdapter/BaseFeatureDataAdapter.js +99 -27
  208. package/esm/data_adapters/BaseAdapter/BaseRefNameAliasAdapter.d.ts +1 -0
  209. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.d.ts +13 -5
  210. package/esm/data_adapters/BaseAdapter/BaseSequenceAdapter.js +9 -7
  211. package/esm/data_adapters/BaseAdapter/BaseTextSearchAdapter.d.ts +2 -1
  212. package/esm/data_adapters/BaseAdapter/CytobandAdapter.d.ts +7 -0
  213. package/esm/data_adapters/BaseAdapter/RegionsAdapter.d.ts +2 -1
  214. package/esm/data_adapters/BaseAdapter/getAdapterId.d.ts +2 -0
  215. package/esm/data_adapters/BaseAdapter/getAdapterId.js +9 -0
  216. package/esm/data_adapters/BaseAdapter/index.d.ts +6 -4
  217. package/esm/data_adapters/BaseAdapter/index.js +5 -5
  218. package/esm/data_adapters/BaseAdapter/stats.d.ts +5 -5
  219. package/esm/data_adapters/BaseAdapter/stats.js +48 -22
  220. package/esm/data_adapters/BaseAdapter/types.d.ts +10 -8
  221. package/esm/data_adapters/BaseAdapter/types.js +1 -0
  222. package/esm/data_adapters/BaseAdapter/util.d.ts +5 -1
  223. package/esm/data_adapters/BaseAdapter/util.js +14 -3
  224. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.d.ts +1 -1
  225. package/esm/data_adapters/CytobandAdapter/CytobandAdapter.js +4 -4
  226. package/esm/data_adapters/CytobandAdapter/configSchema.d.ts +36 -4
  227. package/esm/data_adapters/CytobandAdapter/configSchema.js +46 -2
  228. package/esm/data_adapters/CytobandAdapter/index.js +3 -3
  229. package/esm/data_adapters/adapterSessionRefcount.d.ts +61 -0
  230. package/esm/data_adapters/adapterSessionRefcount.js +96 -0
  231. package/esm/data_adapters/dataAdapterCache.d.ts +35 -1
  232. package/esm/data_adapters/dataAdapterCache.js +62 -22
  233. package/esm/data_adapters/getFeatureAdapter.d.ts +22 -0
  234. package/esm/data_adapters/getFeatureAdapter.js +27 -0
  235. package/esm/data_adapters/getSequenceSubAdapter.d.ts +21 -0
  236. package/esm/data_adapters/getSequenceSubAdapter.js +44 -0
  237. package/esm/pluggableElementTypes/AdapterType.d.ts +52 -2
  238. package/esm/pluggableElementTypes/AdapterType.js +44 -5
  239. package/esm/pluggableElementTypes/AddTrackWorkflowType.d.ts +6 -1
  240. package/esm/pluggableElementTypes/AddTrackWorkflowType.js +3 -1
  241. package/esm/pluggableElementTypes/ConnectionType.d.ts +5 -5
  242. package/esm/pluggableElementTypes/ConnectionType.js +1 -1
  243. package/esm/pluggableElementTypes/DisplayType.d.ts +10 -0
  244. package/esm/pluggableElementTypes/DisplayType.js +14 -1
  245. package/esm/pluggableElementTypes/InternetAccountType.js +1 -1
  246. package/esm/pluggableElementTypes/PluggableElementBase.d.ts +13 -0
  247. package/esm/pluggableElementTypes/PluggableElementBase.js +13 -0
  248. package/esm/pluggableElementTypes/RpcMethodType.d.ts +132 -12
  249. package/esm/pluggableElementTypes/RpcMethodType.js +263 -98
  250. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.d.ts +19 -9
  251. package/esm/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions.js +26 -20
  252. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.d.ts +5 -0
  253. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegion.js +18 -0
  254. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.d.ts +5 -0
  255. package/esm/pluggableElementTypes/RpcMethodTypeWithRenameRegions.js +10 -0
  256. package/esm/pluggableElementTypes/TextSearchAdapterType.d.ts +3 -3
  257. package/esm/pluggableElementTypes/TextSearchAdapterType.js +3 -1
  258. package/esm/pluggableElementTypes/TrackType.d.ts +2 -1
  259. package/esm/pluggableElementTypes/TrackType.js +1 -1
  260. package/esm/pluggableElementTypes/ViewType.d.ts +2 -1
  261. package/esm/pluggableElementTypes/ViewType.js +9 -2
  262. package/esm/pluggableElementTypes/WidgetType.d.ts +2 -2
  263. package/esm/pluggableElementTypes/WidgetType.js +1 -1
  264. package/esm/pluggableElementTypes/addMenuItems.d.ts +87 -0
  265. package/esm/pluggableElementTypes/addMenuItems.js +82 -0
  266. package/esm/pluggableElementTypes/extendElementType.d.ts +30 -0
  267. package/esm/pluggableElementTypes/extendElementType.js +68 -0
  268. package/esm/pluggableElementTypes/index.d.ts +7 -7
  269. package/esm/pluggableElementTypes/index.js +24 -14
  270. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.d.ts +70 -15
  271. package/esm/pluggableElementTypes/models/BaseConnectionModelFactory.js +90 -10
  272. package/esm/pluggableElementTypes/models/BaseDisplayModel.d.ts +605 -84
  273. package/esm/pluggableElementTypes/models/BaseDisplayModel.js +172 -64
  274. package/esm/pluggableElementTypes/models/BaseTrackModel.d.ts +196 -55
  275. package/esm/pluggableElementTypes/models/BaseTrackModel.js +332 -85
  276. package/esm/pluggableElementTypes/models/BaseViewModel.d.ts +167 -16
  277. package/esm/pluggableElementTypes/models/BaseViewModel.js +111 -16
  278. package/esm/pluggableElementTypes/models/HighlightsMixin.d.ts +51 -0
  279. package/esm/pluggableElementTypes/models/HighlightsMixin.js +78 -0
  280. package/esm/pluggableElementTypes/models/InternetAccountModel.d.ts +163 -29
  281. package/esm/pluggableElementTypes/models/InternetAccountModel.js +218 -48
  282. package/esm/pluggableElementTypes/models/assertDisplayContract.d.ts +174 -0
  283. package/esm/pluggableElementTypes/models/assertDisplayContract.js +246 -0
  284. package/esm/pluggableElementTypes/models/baseConnectionConfig.d.ts +22 -8
  285. package/esm/pluggableElementTypes/models/baseConnectionConfig.js +18 -2
  286. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +39 -20
  287. package/esm/pluggableElementTypes/models/baseInternetAccountConfig.js +23 -2
  288. package/esm/pluggableElementTypes/models/baseTrackConfig.d.ts +181 -65
  289. package/esm/pluggableElementTypes/models/baseTrackConfig.js +191 -89
  290. package/esm/pluggableElementTypes/models/components/SaveTrackData.d.ts +3 -8
  291. package/esm/pluggableElementTypes/models/components/SaveTrackData.js +113 -139
  292. package/esm/pluggableElementTypes/models/components/fetchTrackData.d.ts +55 -0
  293. package/esm/pluggableElementTypes/models/components/fetchTrackData.js +83 -0
  294. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.d.ts +40 -0
  295. package/esm/pluggableElementTypes/models/expandTrackConfigShorthand.js +115 -0
  296. package/esm/pluggableElementTypes/models/index.d.ts +6 -3
  297. package/esm/pluggableElementTypes/models/index.js +10 -8
  298. package/esm/pluggableElementTypes/models/migrateTrackConfig.d.ts +34 -0
  299. package/esm/pluggableElementTypes/models/migrateTrackConfig.js +54 -0
  300. package/esm/pluggableElementTypes/models/saveTrackFileTypes/bed.js +75 -7
  301. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.d.ts +9 -3
  302. package/esm/pluggableElementTypes/models/saveTrackFileTypes/genbank.js +153 -103
  303. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.d.ts +6 -1
  304. package/esm/pluggableElementTypes/models/saveTrackFileTypes/gff3.js +70 -74
  305. package/esm/pluggableElementTypes/models/saveTrackFileTypes/types.d.ts +9 -1
  306. package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.d.ts +21 -0
  307. package/esm/pluggableElementTypes/models/saveTrackFileTypes/util.js +51 -0
  308. package/esm/pluggableElementTypes/models/uriMatchesDomains.d.ts +29 -0
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  1026. package/esm/util/virtualRange.d.ts +36 -0
  1027. package/esm/util/virtualRange.js +26 -0
  1028. package/esm/util/webStorage.d.ts +26 -0
  1029. package/esm/util/webStorage.js +92 -0
  1030. package/esm/util/wheelZoom.d.ts +59 -0
  1031. package/esm/util/wheelZoom.js +231 -0
  1032. package/esm/util/whenViewSettled.d.ts +27 -0
  1033. package/esm/util/whenViewSettled.js +28 -0
  1034. package/esm/util/withFeatureDetails.d.ts +34 -0
  1035. package/esm/util/withFeatureDetails.js +59 -0
  1036. package/package.json +240 -820
  1037. package/esm/ReExports/DataGrid.d.ts +0 -1
  1038. package/esm/ReExports/DataGrid.js +0 -1
  1039. package/esm/configuration/util.d.ts +0 -10
  1040. package/esm/configuration/util.js +0 -123
  1041. package/esm/data_adapters/BaseAdapter/BaseOptions.d.ts +0 -18
  1042. package/esm/data_adapters/util.d.ts +0 -1
  1043. package/esm/data_adapters/util.js +0 -6
  1044. package/esm/pluggableElementTypes/GlyphType.d.ts +0 -43
  1045. package/esm/pluggableElementTypes/GlyphType.js +0 -18
  1046. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.d.ts +0 -5
  1047. package/esm/pluggableElementTypes/models/saveTrackFileTypes/fetchSequence.js +0 -17
  1048. package/esm/pluggableElementTypes/renderers/BoxRendererType.d.ts +0 -52
  1049. package/esm/pluggableElementTypes/renderers/BoxRendererType.js +0 -78
  1050. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.d.ts +0 -4
  1051. package/esm/pluggableElementTypes/renderers/CircularChordRendererType.js +0 -4
  1052. package/esm/pluggableElementTypes/renderers/FeatureRendererType.d.ts +0 -58
  1053. package/esm/pluggableElementTypes/renderers/FeatureRendererType.js +0 -77
  1054. package/esm/pluggableElementTypes/renderers/LayoutSession.d.ts +0 -31
  1055. package/esm/pluggableElementTypes/renderers/LayoutSession.js +0 -40
  1056. package/esm/pluggableElementTypes/renderers/RendererType.d.ts +0 -28
  1057. package/esm/pluggableElementTypes/renderers/RendererType.js +0 -20
  1058. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +0 -58
  1059. package/esm/pluggableElementTypes/renderers/ServerSideRendererType.js +0 -108
  1060. package/esm/pluggableElementTypes/renderers/index.d.ts +0 -6
  1061. package/esm/pluggableElementTypes/renderers/index.js +0 -6
  1062. package/esm/pluggableElementTypes/renderers/util.d.ts +0 -3
  1063. package/esm/pluggableElementTypes/renderers/util.js +0 -14
  1064. package/esm/rpc/baseRpcConfig.d.ts +0 -8
  1065. package/esm/rpc/baseRpcConfig.js +0 -10
  1066. package/esm/rpc/mainThreadRpcConfig.d.ts +0 -8
  1067. package/esm/rpc/mainThreadRpcConfig.js +0 -8
  1068. package/esm/rpc/methods/CoreGetFeatureDensityStats.d.ts +0 -17
  1069. package/esm/rpc/methods/CoreGetFeatureDensityStats.js +0 -25
  1070. package/esm/rpc/methods/CoreGetFeatureDetails.d.ts +0 -11
  1071. package/esm/rpc/methods/CoreGetFeatureDetails.js +0 -24
  1072. package/esm/rpc/methods/CoreGetFileInfo.d.ts +0 -9
  1073. package/esm/rpc/methods/CoreGetFileInfo.js +0 -15
  1074. package/esm/rpc/methods/CoreRender.d.ts +0 -14
  1075. package/esm/rpc/methods/CoreRender.js +0 -40
  1076. package/esm/rpc/methods/CoreSaveFeatureData.d.ts +0 -16
  1077. package/esm/rpc/methods/CoreSaveFeatureData.js +0 -32
  1078. package/esm/rpc/methods/util.d.ts +0 -15
  1079. package/esm/rpc/methods/util.js +0 -7
  1080. package/esm/rpc/webWorkerRpcConfig.d.ts +0 -8
  1081. package/esm/rpc/webWorkerRpcConfig.js +0 -8
  1082. package/esm/ui/MenuButton.d.ts +0 -1
  1083. package/esm/ui/MenuButton.js +0 -1
  1084. package/esm/ui/MenuItems.d.ts +0 -15
  1085. package/esm/ui/MenuItems.js +0 -59
  1086. package/esm/ui/useEvent.d.ts +0 -1
  1087. package/esm/ui/useEvent.js +0 -10
  1088. package/esm/util/blobToDataURL.d.ts +0 -1
  1089. package/esm/util/blobToDataURL.js +0 -14
  1090. package/esm/util/compositeMap.d.ts +0 -11
  1091. package/esm/util/compositeMap.js +0 -59
  1092. package/esm/util/flatqueue/index.d.ts +0 -11
  1093. package/esm/util/flatqueue/index.js +0 -61
  1094. package/esm/util/layouts/BaseLayout.d.ts +0 -30
  1095. package/esm/util/layouts/MultiLayout.d.ts +0 -12
  1096. package/esm/util/layouts/MultiLayout.js +0 -40
  1097. package/esm/util/layouts/PileupLayout.d.ts +0 -41
  1098. package/esm/util/layouts/PileupLayout.js +0 -202
  1099. package/esm/util/layouts/PrecomputedLayout.d.ts +0 -30
  1100. package/esm/util/layouts/PrecomputedLayout.js +0 -71
  1101. package/esm/util/layouts/SceneGraph.d.ts +0 -31
  1102. package/esm/util/layouts/SceneGraph.js +0 -121
  1103. package/esm/util/makeAbortableReaction.d.ts +0 -3
  1104. package/esm/util/makeAbortableReaction.js +0 -47
  1105. package/esm/util/map-obj/index.d.ts +0 -13
  1106. package/esm/util/map-obj/index.js +0 -92
  1107. package/esm/util/nextTick.d.ts +0 -1
  1108. package/esm/util/nextTick.js +0 -3
  1109. package/esm/util/offscreenCanvasGetSerializingSvg.d.ts +0 -5
  1110. package/esm/util/offscreenCanvasGetSerializingSvg.js +0 -9
  1111. package/esm/util/offscreenCanvasUtils.d.ts +0 -12
  1112. package/esm/util/offscreenCanvasUtils.js +0 -19
  1113. package/esm/util/renderToAbstractCanvas.d.ts +0 -17
  1114. package/esm/util/renderToAbstractCanvas.js +0 -53
  1115. package/esm/util/transferables.d.ts +0 -2
  1116. package/esm/util/transferables.js +0 -35
  1117. package/esm/util/tss-react/mui/index.d.ts +0 -1
  1118. package/esm/util/tss-react/mui/index.js +0 -1
  1119. package/esm/util/tss-react/mui/mui.d.ts +0 -10
  1120. package/esm/util/tss-react/mui/mui.js +0 -5
  1121. package/esm/util/when.d.ts +0 -1
  1122. package/esm/util/when.js +0 -1
  1123. /package/esm/{data_adapters/BaseAdapter/BaseOptions.js → configuration/promotablePin.js} +0 -0
  1124. /package/esm/{util/layouts/BaseLayout.js → data_adapters/BaseAdapter/CytobandAdapter.js} +0 -0
@@ -1,39 +1,208 @@
1
- import { darken, emphasize as muiEmphasize, getContrastRatio, getLuminance as muiGetLuminance, lighten, } from '@mui/material/styles';
2
- import { namedColorToHex } from "./cssColorsLevel4.js";
3
- export function contrastingTextColor(color) {
4
- const luminance = getLuminance(color);
5
- return luminance > 0.5 ? 'black' : 'white';
6
- }
1
+ // The color math is `ui/palette.ts`'s, not Material UI's. Same values —
2
+ // `palette.test.ts` asserts them against a real MUI theme, and `emphasize` is
3
+ // checked against MUI's directly below — but this module is reached from a
4
+ // plugin's eagerly-evaluated code, and the MUI import made it one of the
5
+ // first-party edges keeping `@mui/material/styles` in every host's first paint.
6
+ // See agent-docs/reference/EAGER_BUNDLE.md.
7
+ import { darken, getContrastRatio, lighten, getLuminance as luminanceOf, } from '../../ui/palette.js';
8
+ import * as convert from '../color-bits/convert.js';
9
+ import { cssColorToNormalizedRgb } from '../colorBits.js';
10
+ import { namedColorToHex } from './cssColorsLevel4.js';
11
+ /**
12
+ * The relative brightness of any point in a color space,
13
+ * normalized to 0 for darkest black and 1 for lightest white,
14
+ * with support for named colors on top.
15
+ *
16
+ * Formula: https://www.w3.org/TR/WCAG20-TECHS/G17.html#G17-tests
17
+ *
18
+ * @param color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(),
19
+ * hsl(), hsla(), or named color
20
+ * @returns The relative brightness of the color in the range 0 - 1
21
+ */
7
22
  function getLuminance(color) {
8
23
  const convertedColor = namedColorToHex(color);
9
- return muiGetLuminance(convertedColor || color);
24
+ return luminanceOf(convertedColor || color);
10
25
  }
26
+ /**
27
+ * Darken or lighten a color, depending on its luminance.
28
+ * Light colors are darkened, dark colors are lightened.
29
+ *
30
+ * @param color - CSS color, i.e. one of: #nnn, #nnnnnn, rgb(), rgba(),
31
+ * hsl(), hsla(), or named color
32
+ * @param coefficient - multiplier in the range 0 - 1, defaults to 0.15
33
+ * @returns A CSS color string. Hex input values are returned as rgb
34
+ */
11
35
  export function emphasize(color, coefficient = 0.15) {
12
- const convertedColor = namedColorToHex(color);
13
- return muiEmphasize(convertedColor || color, coefficient);
36
+ const convertedColor = namedColorToHex(color) || color;
37
+ return getLuminance(convertedColor) > 0.5
38
+ ? darken(convertedColor, coefficient)
39
+ : lighten(convertedColor, coefficient);
14
40
  }
41
+ const CONTRAST_STEPS = 20;
42
+ /**
43
+ * Push `foreground` away from `background` until it clears `minContrastRatio`,
44
+ * returning the closest it got when that ratio is unreachable.
45
+ *
46
+ * `minContrastRatio` genuinely cannot be met against a mid-luminance
47
+ * background: lighten/darken clamp their coefficient at 1, so the candidate
48
+ * pins at white/black, and against a `#b0b0b0` paper the best ratio any color
49
+ * reaches is about 2.2. This used to be a `while (ratio < min)` loop with an
50
+ * unbounded coefficient, which froze the render thread outright for 38 of the 40
51
+ * default refName colors.
52
+ */
15
53
  export function makeContrasting(foreground, background = 'white', minContrastRatio = 3) {
16
- let convertedForeground = namedColorToHex(foreground) || foreground;
54
+ const originalColor = namedColorToHex(foreground) || foreground;
17
55
  const convertedBackground = namedColorToHex(background) || background;
18
56
  const backgroundLuminance = getLuminance(convertedBackground);
19
- let contrastRatio = getContrastRatio(convertedForeground, convertedBackground);
20
- const originalColor = convertedForeground;
21
- let coefficient = 0.05;
22
- while (contrastRatio < minContrastRatio) {
23
- convertedForeground =
24
- backgroundLuminance > 0.5
25
- ? darken(originalColor, coefficient)
26
- : lighten(originalColor, coefficient);
27
- coefficient += 0.05;
28
- contrastRatio = getContrastRatio(convertedForeground, convertedBackground);
57
+ let best = originalColor;
58
+ let bestRatio = getContrastRatio(originalColor, convertedBackground);
59
+ // an integer step keeps the last coefficient exactly 1, where the clamp bites
60
+ for (let step = 1; step <= CONTRAST_STEPS && bestRatio < minContrastRatio; step++) {
61
+ const coefficient = step / CONTRAST_STEPS;
62
+ const candidate = backgroundLuminance > 0.5
63
+ ? darken(originalColor, coefficient)
64
+ : lighten(originalColor, coefficient);
65
+ const ratio = getContrastRatio(candidate, convertedBackground);
66
+ // lightening a dark color against a mid-grey background dips before it
67
+ // climbs, so track the max rather than taking the last candidate
68
+ if (ratio > bestRatio) {
69
+ best = candidate;
70
+ bestRatio = ratio;
71
+ }
72
+ }
73
+ return best;
74
+ }
75
+ export { isNamedColor, namedColorToHex } from './cssColorsLevel4.js';
76
+ // The (lightness, chroma) tiers randomColor picks between, in OKLCH. Values are
77
+ // in the band a hand-built categorical palette occupies — bright enough to tell
78
+ // apart, dark enough that black text over one still reads, and never near
79
+ // white/black. The three differ enough to separate two neighbouring hues, and
80
+ // little enough that no tier reads as "the faded ones".
81
+ // What a value-less feature is painted. Neutral and unsaturated on purpose: it
82
+ // has to read as "not in a category" beside a palette whose every member is
83
+ // equally light and equally colorful, so it cannot be one more hue.
84
+ const NO_CATEGORY_COLOR = '#afafaf';
85
+ const RANDOM_COLOR_TIERS = [
86
+ { lightness: 0.66, chroma: 0.15 },
87
+ { lightness: 0.56, chroma: 0.14 },
88
+ { lightness: 0.75, chroma: 0.12 },
89
+ ];
90
+ // sRGB has room for very different amounts of chroma at different hues (a
91
+ // vivid yellow exists, an equally vivid blue does not), so a requested chroma
92
+ // is often outside the gamut. Bisect down to the most saturated in-gamut
93
+ // version of the SAME hue and lightness, rather than letting the channel clamp
94
+ // do it — clamping a channel shifts the hue, which is the one thing this must
95
+ // hold constant.
96
+ const GAMUT_BISECTION_STEPS = 8;
97
+ const GAMUT_EPSILON = 1 / 512;
98
+ function oklchToSrgb(lightness, chroma, hue) {
99
+ return convert.xyzd50ToSrgb(...convert.oklchToXyzd50(lightness, chroma, hue));
100
+ }
101
+ function inGamut(rgb) {
102
+ return rgb.every(v => v >= -GAMUT_EPSILON && v <= 1 + GAMUT_EPSILON);
103
+ }
104
+ function oklchToHex(lightness, chroma, hue) {
105
+ let rgb = oklchToSrgb(lightness, chroma, hue);
106
+ if (!inGamut(rgb)) {
107
+ let lo = 0;
108
+ let hi = chroma;
109
+ for (let i = 0; i < GAMUT_BISECTION_STEPS; i++) {
110
+ const mid = (lo + hi) / 2;
111
+ const candidate = oklchToSrgb(lightness, mid, hue);
112
+ if (inGamut(candidate)) {
113
+ lo = mid;
114
+ rgb = candidate;
115
+ }
116
+ else {
117
+ hi = mid;
118
+ }
119
+ }
29
120
  }
30
- return convertedForeground;
121
+ return `#${rgb
122
+ .map(v => Math.max(0, Math.min(255, Math.round(v * 255)))
123
+ .toString(16)
124
+ .padStart(2, '0'))
125
+ .join('')}`;
31
126
  }
32
- export { isNamedColor, namedColorToHex } from "./cssColorsLevel4.js";
127
+ /**
128
+ * #api
129
+ * Move a color's OKLCH lightness by `lightnessShift` and scale its chroma,
130
+ * holding its hue.
131
+ *
132
+ * For extending a categorical palette past its length. Cycling a nine-color
133
+ * list over a 24-chromosome karyotype repeats the color outright; cycling it
134
+ * with a lightness shift per lap gives the hue back as a variant still told
135
+ * apart from the original — tab20's construction, which pairs a light and a
136
+ * dark of each hue.
137
+ *
138
+ * SHIFT rather than a fixed lightness, and SCALE rather than a fixed chroma,
139
+ * because a categorical palette is uneven on purpose: category10's brown and
140
+ * its red are 5 degrees apart in hue and are told apart by chroma alone, so
141
+ * re-lighting both to one (lightness, chroma) makes them the same color.
142
+ * Keeping each color's own relative chroma keeps brown reading as brown.
143
+ *
144
+ * In OKLCH rather than through `lighten`/`darken`, which work in sRGB, where
145
+ * the same coefficient moves a yellow and a blue by visibly different amounts:
146
+ * a lap has to read as one tone across the whole palette or it reads as noise.
147
+ *
148
+ * @param color - CSS color to transform
149
+ * @param lightnessShift - added to its OKLCH lightness (which is 0 - 1)
150
+ * @param chromaScale - multiplies its OKLCH chroma; the result is reduced at
151
+ * constant hue if that lands out of gamut
152
+ * @returns A CSS hex color string
153
+ */
154
+ export function relight(color, lightnessShift, chromaScale = 1) {
155
+ const [lightness, chroma, hue] = convert.xyzd50ToOklch(...convert.srgbToXyzd50(...cssColorToNormalizedRgb(color)));
156
+ return oklchToHex(Math.max(0, Math.min(1, lightness + lightnessShift)), chroma * chromaScale, hue);
157
+ }
158
+ /**
159
+ * Generate a consistent random color for a given string.
160
+ * The same string will always generate the same color, with no shared palette
161
+ * state — so the same value (e.g. a gene symbol used as an ortholog id) gets the
162
+ * same color across independent tracks/panels.
163
+ *
164
+ * Statelessness is why this hashes into a color space rather than indexing a
165
+ * fixed palette of N: with no allocator there is no "next unused color", so an
166
+ * N-color palette collides by the birthday problem — six values into a
167
+ * twenty-color palette collide more often than not — while a hue circle does
168
+ * not repeat until 360 values. What a curated palette actually buys is
169
+ * perceptual evenness, and that comes from the space, not the list: hues are
170
+ * placed in OKLCH at a fixed lightness and chroma, so every value is equally
171
+ * light and equally colorful. HSL, which this used to use, is neither — its
172
+ * hue wheel spends a quarter of itself on greens that look identical and a
173
+ * sliver on yellow, and at one lightness its yellows glare while its blues go
174
+ * murky. That unevenness is what reads as "random RGB".
175
+ *
176
+ * A value that is absent gets NO_CATEGORY_COLOR rather than a hue, and that is
177
+ * the difference between this being usable on real data and not. The everyday
178
+ * caller is the Color-by-attribute dialog, which writes
179
+ * `jexl:randomColor(get(feature,'<attr>'))` over a whole track — and most files
180
+ * have the attribute on some features and not others, so most of the time this
181
+ * is handed `undefined`. It used to throw on that (`str.length` of undefined),
182
+ * once per feature, and what a reader saw was every unlabelled feature in one
183
+ * strong color: a large fake category, drawn over the real ones. Grey says the
184
+ * only true thing about a feature with no value for the attribute you asked to
185
+ * colour by.
186
+ *
187
+ * @param str - The string to generate a color from
188
+ * @returns A CSS hex color string
189
+ */
33
190
  export function randomColor(str) {
34
- let sum = 0;
191
+ if (!str) {
192
+ return NO_CATEGORY_COLOR;
193
+ }
194
+ // djb2 hash — much better distribution than a char-code sum (anagrams and
195
+ // similar strings get well-separated hues).
196
+ let hash = 5381;
35
197
  for (let i = 0; i < str.length; i++) {
36
- sum += str.charCodeAt(i);
198
+ hash = ((hash << 5) + hash) ^ str.charCodeAt(i);
37
199
  }
38
- return `hsl(${sum * 10}, 50%, 50%)`;
200
+ const h = hash >>> 0;
201
+ const hue = h % 360;
202
+ // The tier is picked by a separately mixed hash (xorshift + Math.imul for a
203
+ // real 32-bit multiply — a plain `*` overflows float precision and drops the
204
+ // low bits) so it varies independently of the hue rather than tracking it.
205
+ const mix = Math.imul(h ^ (h >>> 15), 2246822519) >>> 0;
206
+ const tier = RANDOM_COLOR_TIERS[mix % RANDOM_COLOR_TIERS.length];
207
+ return oklchToHex(tier.lightness, tier.chroma, hue);
39
208
  }
@@ -0,0 +1,4 @@
1
+ export declare function cast(n: number): number;
2
+ export declare function get(n: number, offset: number): number;
3
+ export declare function set(n: number, offset: number, byte: number): number;
4
+ export declare function clampByte(n: number): number;
@@ -0,0 +1,37 @@
1
+ // Bitwise functions
2
+ //
3
+ // The color representation would ideally be 32-bits unsigned, but JS bitwise
4
+ // operators only work as 32-bits signed. The range of Smi values on V8 is also
5
+ // 32-bits signed. Those two factors make it that it's much more efficient to just
6
+ // use signed integers to represent the data.
7
+ //
8
+ // Colors with a R channel >= 0x80 will be a negative number, but that's not really
9
+ // an issue at any point because the bits for signed and unsigned integers are always
10
+ // the same, only their interpretation changes.
11
+ const INT32_TO_UINT32_OFFSET = 2 ** 32;
12
+ export function cast(n) {
13
+ if (n < 0) {
14
+ return n + INT32_TO_UINT32_OFFSET;
15
+ }
16
+ return n;
17
+ }
18
+ export function get(n, offset) {
19
+ return (n >> offset) & 0xff;
20
+ }
21
+ export function set(n, offset, byte) {
22
+ return n ^ ((n ^ (clampByte(byte) << offset)) & (0xff << offset));
23
+ }
24
+ // CSS clamps an out-of-range channel and this composition cannot: `<<` wraps,
25
+ // and `newColor`'s `+` then carries the overflow into the neighbouring channel.
26
+ // Unclamped, `rgb(0 0 0 / -20%)` composes to white at 80% rather than to
27
+ // transparent black, and `alpha(red, 1.4)` masks 357 down to 101, painting a
28
+ // feature at 40% opacity for a caller that asked for more than full. Both
29
+ // channel parsers already document a 0..255 result; this is what makes it true.
30
+ export function clampByte(n) {
31
+ // `> 0` rather than `< 0`, so NaN takes the zero branch: every comparison
32
+ // against NaN is false, and an unclamped NaN shifts to 0 anyway — silently,
33
+ // one channel at a time. `jexl:alpha(color, get(feature,'opacity'))` on a
34
+ // non-numeric attribute is the reachable one, and it drew the feature at
35
+ // alpha 0 instead of reaching the invalid-colour sentinel.
36
+ return n > 0 ? (n > 255 ? 255 : n) : 0;
37
+ }
@@ -0,0 +1,23 @@
1
+ export declare function labToXyzd50(l: number, a: number, b: number): [number, number, number];
2
+ export declare function xyzd50ToLab(x: number, y: number, z: number): [number, number, number];
3
+ export declare function oklabToXyzd65(l: number, a: number, b: number): [number, number, number];
4
+ export declare function xyzd65ToOklab(x: number, y: number, z: number): [number, number, number];
5
+ export declare function lchToLab(l: number, c: number, h: number | undefined): [number, number, number];
6
+ export declare function labToLch(l: number, a: number, b: number): [number, number, number];
7
+ export declare function displayP3ToXyzd50(r: number, g: number, b: number): [number, number, number];
8
+ export declare function xyzd50ToDisplayP3(x: number, y: number, z: number): [number, number, number];
9
+ export declare function proPhotoToXyzd50(r: number, g: number, b: number): [number, number, number];
10
+ export declare function xyzd50ToProPhoto(x: number, y: number, z: number): [number, number, number];
11
+ export declare function adobeRGBToXyzd50(r: number, g: number, b: number): [number, number, number];
12
+ export declare function xyzd50ToAdobeRGB(x: number, y: number, z: number): [number, number, number];
13
+ export declare function rec2020ToXyzd50(r: number, g: number, b: number): [number, number, number];
14
+ export declare function xyzd50ToRec2020(x: number, y: number, z: number): [number, number, number];
15
+ export declare function xyzd50ToD65(x: number, y: number, z: number): [number, number, number];
16
+ export declare function xyzd65ToD50(x: number, y: number, z: number): [number, number, number];
17
+ export declare function xyzd65TosRGBLinear(x: number, y: number, z: number): [number, number, number];
18
+ export declare function xyzd50TosRGBLinear(x: number, y: number, z: number): [number, number, number];
19
+ export declare function srgbLinearToXyzd50(r: number, g: number, b: number): [number, number, number];
20
+ export declare function srgbToXyzd50(r: number, g: number, b: number): [number, number, number];
21
+ export declare function xyzd50ToSrgb(x: number, y: number, z: number): [number, number, number];
22
+ export declare function oklchToXyzd50(lInput: number, c: number, h: number): [number, number, number];
23
+ export declare function xyzd50ToOklch(x: number, y: number, z: number): [number, number, number];
@@ -0,0 +1,294 @@
1
+ // Copyright 2022 The Chromium Authors. All rights reserved.
2
+ // Use of this source code is governed by a BSD-style license that can be
3
+ // found in the LICENSE file.
4
+ //
5
+ // Source: https://github.com/ChromeDevTools/devtools-frontend/blob/c51201e6ee70370f7f1ac8a1a49dca7d4561aeaa/front_end/core/common/ColorConverter.ts
6
+ // License: https://github.com/ChromeDevTools/devtools-frontend/blob/c51201e6ee70370f7f1ac8a1a49dca7d4561aeaa/LICENSE
7
+ /**
8
+ * Implementation of this module and all the tests are heavily influenced by
9
+ * https://source.chromium.org/chromium/chromium/src/+/main:ui/gfx/color_conversions.cc
10
+ */
11
+ // https://en.wikipedia.org/wiki/CIELAB_color_space#Converting_between_CIELAB_and_CIEXYZ_coordinates
12
+ const D50_X = 0.9642;
13
+ const D50_Y = 1;
14
+ const D50_Z = 0.8251;
15
+ function multiply(matrix, other) {
16
+ const dst = [0, 0, 0];
17
+ for (let row = 0; row < 3; ++row) {
18
+ dst[row] =
19
+ matrix[row][0] * other[0] +
20
+ matrix[row][1] * other[1] +
21
+ matrix[row][2] * other[2];
22
+ }
23
+ return dst;
24
+ }
25
+ // A transfer function mapping encoded values to linear values,
26
+ // represented by this 7-parameter piecewise function:
27
+ //
28
+ // linear = sign(encoded) * (c*|encoded| + f) , 0 <= |encoded| < d
29
+ // = sign(encoded) * ((a*|encoded| + b)^g + e), d <= |encoded|
30
+ //
31
+ // (A simple gamma transfer function sets g to gamma and a to 1.)
32
+ class TransferFunction {
33
+ g;
34
+ a;
35
+ b;
36
+ c;
37
+ d;
38
+ e;
39
+ f;
40
+ constructor(g, a, b = 0, c = 0, d = 0, e = 0, f = 0) {
41
+ this.g = g;
42
+ this.a = a;
43
+ this.b = b;
44
+ this.c = c;
45
+ this.d = d;
46
+ this.e = e;
47
+ this.f = f;
48
+ }
49
+ eval(val) {
50
+ const sign = val < 0 ? -1 : 1;
51
+ const abs = val * sign;
52
+ if (abs < this.d) {
53
+ return sign * (this.c * abs + this.f);
54
+ }
55
+ return sign * (Math.pow(this.a * abs + this.b, this.g) + this.e);
56
+ }
57
+ }
58
+ const NAMED_TRANSFER_FN = {
59
+ sRGB: new TransferFunction(2.4, 1 / 1.055, 0.055 / 1.055, 1 / 12.92, 0.04045, 0, 0),
60
+ sRGB_INVERSE: new TransferFunction(0.416667, 1.13728, -0, 12.92, 0.0031308, -0.0549698, -0),
61
+ proPhotoRGB: new TransferFunction(1.8, 1),
62
+ proPhotoRGB_INVERSE: new TransferFunction(0.555556, 1, -0, 0, 0, 0, 0),
63
+ k2Dot2: new TransferFunction(2.2, 1),
64
+ k2Dot2_INVERSE: new TransferFunction(0.454545, 1),
65
+ rec2020: new TransferFunction(2.22222, 0.909672, 0.0903276, 0.222222, 0.0812429, 0, 0),
66
+ rec2020_INVERSE: new TransferFunction(0.45, 1.23439, -0, 4.5, 0.018054, -0.0993195, -0),
67
+ };
68
+ const NAMED_GAMUTS = {
69
+ sRGB: [
70
+ [0.436065674, 0.385147095, 0.143066406],
71
+ [0.222488403, 0.716873169, 0.06060791],
72
+ [0.013916016, 0.097076416, 0.714096069],
73
+ ],
74
+ sRGB_INVERSE: [
75
+ [3.134112151374599, -1.6173924597114966, -0.4906334036481285],
76
+ [-0.9787872938826594, 1.9162795854799963, 0.0334547139520088],
77
+ [0.07198304248352326, -0.2289858493321844, 1.4053851325241447],
78
+ ],
79
+ displayP3: [
80
+ [0.515102, 0.291965, 0.157153],
81
+ [0.241182, 0.692236, 0.0665819],
82
+ [-0.00104941, 0.0418818, 0.784378],
83
+ ],
84
+ displayP3_INVERSE: [
85
+ [2.404045155982687, -0.9898986932663839, -0.3976317191366333],
86
+ [-0.8422283799266768, 1.7988505115115485, 0.016048170293157416],
87
+ [0.04818705979712955, -0.09737385156228891, 1.2735066448052303],
88
+ ],
89
+ adobeRGB: [
90
+ [0.60974, 0.20528, 0.14919],
91
+ [0.31111, 0.62567, 0.06322],
92
+ [0.01947, 0.06087, 0.74457],
93
+ ],
94
+ adobeRGB_INVERSE: [
95
+ [1.9625385510109137, -0.6106892546501431, -0.3413827467482388],
96
+ [-0.9787580455521, 1.9161624707082339, 0.03341676594241408],
97
+ [0.028696263137883395, -0.1406807819331586, 1.349252109991369],
98
+ ],
99
+ rec2020: [
100
+ [0.673459, 0.165661, 0.1251],
101
+ [0.279033, 0.675338, 0.0456288],
102
+ [-0.00193139, 0.0299794, 0.797162],
103
+ ],
104
+ rec2020_INVERSE: [
105
+ [1.647275201661012, -0.3936024771460771, -0.23598028884792507],
106
+ [-0.6826176165196962, 1.647617775014935, 0.01281626807852422],
107
+ [0.029662725298529837, -0.06291668721366285, 1.2533964313435522],
108
+ ],
109
+ xyz: [
110
+ [1, 0, 0],
111
+ [0, 1, 0],
112
+ [0, 0, 1],
113
+ ],
114
+ };
115
+ function degToRad(deg) {
116
+ return deg * (Math.PI / 180);
117
+ }
118
+ function radToDeg(rad) {
119
+ return rad * (180 / Math.PI);
120
+ }
121
+ function applyTransferFns(fn, r, g, b) {
122
+ return [fn.eval(r), fn.eval(g), fn.eval(b)];
123
+ }
124
+ const OKLAB_TO_LMS_MATRIX = [
125
+ [0.9999999984505198, 0.3963377921737679, 0.2158037580607588],
126
+ [1.000000008881761, -0.10556134232365635, -0.06385417477170591],
127
+ [1.00000005467241, -0.0894841820949658, -1.2914855378640917],
128
+ ];
129
+ const LMS_TO_OKLAB_MATRIX = [
130
+ [0.2104542553, 0.7936177849999999, -0.0040720468],
131
+ [1.9779984951000003, -2.4285922049999997, 0.4505937099000001],
132
+ [0.025904037099999982, 0.7827717662, -0.8086757660000001],
133
+ ];
134
+ const XYZ_TO_LMS_MATRIX = [
135
+ [0.8190224432164319, 0.3619062562801221, -0.12887378261216414],
136
+ [0.0329836671980271, 0.9292868468965546, 0.03614466816999844],
137
+ [0.048177199566046255, 0.26423952494422764, 0.6335478258136937],
138
+ ];
139
+ const LMS_TO_XYZ_MATRIX = [
140
+ [1.226879873374156, -0.5578149965554814, 0.2813910501772159],
141
+ [-0.040575762624313734, 1.1122868293970596, -0.07171106666151703],
142
+ [-0.07637294974672144, -0.4214933239627915, 1.586924024427242],
143
+ ];
144
+ const PRO_PHOTO_TO_XYZD50_MATRIX = [
145
+ [0.7976700747153241, 0.13519395152800417, 0.03135596341127167],
146
+ [0.28803902352472205, 0.7118744007923554, 0.00008661179538844252],
147
+ [2.739876695467402e-7, -0.0000014405226518969991, 0.825211112593861],
148
+ ];
149
+ const XYZD50_TO_PRO_PHOTO_MATRIX = [
150
+ [1.3459533710138858, -0.25561367037652133, -0.051116041522131374],
151
+ [-0.544600415668951, 1.5081687311475767, 0.020535163968720935],
152
+ [-0.0000013975622054109725, 0.000002717590904589903, 1.2118111696814942],
153
+ ];
154
+ const XYZD65_TO_XYZD50_MATRIX = [
155
+ [1.0478573189120088, 0.022907374491829943, -0.050162247377152525],
156
+ [0.029570500050499514, 0.9904755577034089, -0.017061518194840468],
157
+ [-0.00924047197558879, 0.015052921526981566, 0.7519708530777581],
158
+ ];
159
+ const XYZD50_TO_XYZD65_MATRIX = [
160
+ [0.9555366447632887, -0.02306009252137888, 0.06321844147263304],
161
+ [-0.028315378228764922, 1.009951351591575, 0.021026001591792402],
162
+ [0.012308773293784308, -0.02050053471777469, 1.3301947294775631],
163
+ ];
164
+ const XYZD65_TO_SRGB_MATRIX = [
165
+ [3.2408089365140573, -1.5375788839307314, -0.4985609572551541],
166
+ [-0.9692732213205414, 1.876110235238969, 0.041560501141251774],
167
+ [0.05567030990267439, -0.2040007921971802, 1.0571046720577026],
168
+ ];
169
+ export function labToXyzd50(l, a, b) {
170
+ let y = (l + 16) / 116;
171
+ let x = y + a / 500;
172
+ let z = y - b / 200;
173
+ function labInverseTransferFunction(t) {
174
+ const delta = 24 / 116;
175
+ if (t <= delta) {
176
+ return (108 / 841) * (t - 16 / 116);
177
+ }
178
+ return t * t * t;
179
+ }
180
+ x = labInverseTransferFunction(x) * D50_X;
181
+ y = labInverseTransferFunction(y) * D50_Y;
182
+ z = labInverseTransferFunction(z) * D50_Z;
183
+ return [x, y, z];
184
+ }
185
+ export function xyzd50ToLab(x, y, z) {
186
+ function labTransferFunction(t) {
187
+ const deltaLimit = (24 / 116) * (24 / 116) * (24 / 116);
188
+ if (t <= deltaLimit) {
189
+ return (841 / 108) * t + 16 / 116;
190
+ }
191
+ return Math.pow(t, 1 / 3);
192
+ }
193
+ x = labTransferFunction(x / D50_X);
194
+ y = labTransferFunction(y / D50_Y);
195
+ z = labTransferFunction(z / D50_Z);
196
+ const l = 116 * y - 16;
197
+ const a = 500 * (x - y);
198
+ const bOut = 200 * (y - z);
199
+ return [l, a, bOut];
200
+ }
201
+ export function oklabToXyzd65(l, a, b) {
202
+ const labInput = [l, a, b];
203
+ const lmsIntermediate = multiply(OKLAB_TO_LMS_MATRIX, labInput);
204
+ lmsIntermediate[0] =
205
+ lmsIntermediate[0] * lmsIntermediate[0] * lmsIntermediate[0];
206
+ lmsIntermediate[1] =
207
+ lmsIntermediate[1] * lmsIntermediate[1] * lmsIntermediate[1];
208
+ lmsIntermediate[2] =
209
+ lmsIntermediate[2] * lmsIntermediate[2] * lmsIntermediate[2];
210
+ return multiply(LMS_TO_XYZ_MATRIX, lmsIntermediate);
211
+ }
212
+ export function xyzd65ToOklab(x, y, z) {
213
+ const xyzInput = [x, y, z];
214
+ const lmsIntermediate = multiply(XYZ_TO_LMS_MATRIX, xyzInput);
215
+ lmsIntermediate[0] = Math.pow(lmsIntermediate[0], 1 / 3);
216
+ lmsIntermediate[1] = Math.pow(lmsIntermediate[1], 1 / 3);
217
+ lmsIntermediate[2] = Math.pow(lmsIntermediate[2], 1 / 3);
218
+ const labOutput = multiply(LMS_TO_OKLAB_MATRIX, lmsIntermediate);
219
+ return [labOutput[0], labOutput[1], labOutput[2]];
220
+ }
221
+ export function lchToLab(l, c, h) {
222
+ if (h === undefined) {
223
+ return [l, 0, 0];
224
+ }
225
+ return [l, c * Math.cos(degToRad(h)), c * Math.sin(degToRad(h))];
226
+ }
227
+ export function labToLch(l, a, b) {
228
+ return [l, Math.hypot(a, b), radToDeg(Math.atan2(b, a))];
229
+ }
230
+ export function displayP3ToXyzd50(r, g, b) {
231
+ const [mappedR, mappedG, mappedB] = applyTransferFns(NAMED_TRANSFER_FN.sRGB, r, g, b);
232
+ return multiply(NAMED_GAMUTS.displayP3, [mappedR, mappedG, mappedB]);
233
+ }
234
+ export function xyzd50ToDisplayP3(x, y, z) {
235
+ const rgbOutput = multiply(NAMED_GAMUTS.displayP3_INVERSE, [x, y, z]);
236
+ return applyTransferFns(NAMED_TRANSFER_FN.sRGB_INVERSE, rgbOutput[0], rgbOutput[1], rgbOutput[2]);
237
+ }
238
+ export function proPhotoToXyzd50(r, g, b) {
239
+ const [mappedR, mappedG, mappedB] = applyTransferFns(NAMED_TRANSFER_FN.proPhotoRGB, r, g, b);
240
+ return multiply(PRO_PHOTO_TO_XYZD50_MATRIX, [mappedR, mappedG, mappedB]);
241
+ }
242
+ export function xyzd50ToProPhoto(x, y, z) {
243
+ const rgbOutput = multiply(XYZD50_TO_PRO_PHOTO_MATRIX, [x, y, z]);
244
+ return applyTransferFns(NAMED_TRANSFER_FN.proPhotoRGB_INVERSE, rgbOutput[0], rgbOutput[1], rgbOutput[2]);
245
+ }
246
+ export function adobeRGBToXyzd50(r, g, b) {
247
+ const [mappedR, mappedG, mappedB] = applyTransferFns(NAMED_TRANSFER_FN.k2Dot2, r, g, b);
248
+ return multiply(NAMED_GAMUTS.adobeRGB, [mappedR, mappedG, mappedB]);
249
+ }
250
+ export function xyzd50ToAdobeRGB(x, y, z) {
251
+ const rgbOutput = multiply(NAMED_GAMUTS.adobeRGB_INVERSE, [x, y, z]);
252
+ return applyTransferFns(NAMED_TRANSFER_FN.k2Dot2_INVERSE, rgbOutput[0], rgbOutput[1], rgbOutput[2]);
253
+ }
254
+ export function rec2020ToXyzd50(r, g, b) {
255
+ const [mappedR, mappedG, mappedB] = applyTransferFns(NAMED_TRANSFER_FN.rec2020, r, g, b);
256
+ return multiply(NAMED_GAMUTS.rec2020, [mappedR, mappedG, mappedB]);
257
+ }
258
+ export function xyzd50ToRec2020(x, y, z) {
259
+ const rgbOutput = multiply(NAMED_GAMUTS.rec2020_INVERSE, [x, y, z]);
260
+ return applyTransferFns(NAMED_TRANSFER_FN.rec2020_INVERSE, rgbOutput[0], rgbOutput[1], rgbOutput[2]);
261
+ }
262
+ export function xyzd50ToD65(x, y, z) {
263
+ return multiply(XYZD50_TO_XYZD65_MATRIX, [x, y, z]);
264
+ }
265
+ export function xyzd65ToD50(x, y, z) {
266
+ return multiply(XYZD65_TO_XYZD50_MATRIX, [x, y, z]);
267
+ }
268
+ export function xyzd65TosRGBLinear(x, y, z) {
269
+ return multiply(XYZD65_TO_SRGB_MATRIX, [x, y, z]);
270
+ }
271
+ export function xyzd50TosRGBLinear(x, y, z) {
272
+ return multiply(NAMED_GAMUTS.sRGB_INVERSE, [x, y, z]);
273
+ }
274
+ export function srgbLinearToXyzd50(r, g, b) {
275
+ return multiply(NAMED_GAMUTS.sRGB, [r, g, b]);
276
+ }
277
+ export function srgbToXyzd50(r, g, b) {
278
+ const [mappedR, mappedG, mappedB] = applyTransferFns(NAMED_TRANSFER_FN.sRGB, r, g, b);
279
+ return multiply(NAMED_GAMUTS.sRGB, [mappedR, mappedG, mappedB]);
280
+ }
281
+ export function xyzd50ToSrgb(x, y, z) {
282
+ const rgbOutput = multiply(NAMED_GAMUTS.sRGB_INVERSE, [x, y, z]);
283
+ return applyTransferFns(NAMED_TRANSFER_FN.sRGB_INVERSE, rgbOutput[0], rgbOutput[1], rgbOutput[2]);
284
+ }
285
+ export function oklchToXyzd50(lInput, c, h) {
286
+ const [l, a, b] = lchToLab(lInput, c, h);
287
+ const [x65, y65, z65] = oklabToXyzd65(l, a, b);
288
+ return xyzd65ToD50(x65, y65, z65);
289
+ }
290
+ export function xyzd50ToOklch(x, y, z) {
291
+ const [x65, y65, z65] = xyzd50ToD65(x, y, z);
292
+ const [l, a, b] = xyzd65ToOklab(x65, y65, z65);
293
+ return labToLch(l, a, b);
294
+ }
@@ -0,0 +1,34 @@
1
+ export type Color = number;
2
+ export declare const OFFSET_R = 24;
3
+ export declare const OFFSET_G = 16;
4
+ export declare const OFFSET_B = 8;
5
+ export declare const OFFSET_A = 0;
6
+ /**
7
+ * Creates a new color from the given RGBA components.
8
+ * Every component should be in the [0, 255] range.
9
+ */
10
+ export declare function newColor(r: number, g: number, b: number, a: number): number;
11
+ /**
12
+ * Creates a new color from a number in the canonical `0xRRGGBBAA` layout —
13
+ * alpha in the LOW byte, which is what `newColor` composes and what
14
+ * `getRed`/`getAlpha` read.
15
+ *
16
+ * A 24-bit CSS hex is therefore not one of these, and this used to say it was:
17
+ * `from(0x599eff)` is `0x00599eff`, so it reads R=0x00, G=0x59, B=0x9e and
18
+ * A=0xff — every intended channel one byte down, with the blue arriving as the
19
+ * alpha. Spell the alpha (`from(0x599effff)`), or use `newColor(r, g, b, a)`.
20
+ */
21
+ export declare function from(color: number): number;
22
+ /**
23
+ * Turns the color into its equivalent number representation.
24
+ * This is essentially a cast from int32 to uint32.
25
+ */
26
+ export declare function toNumber(color: Color): number;
27
+ export declare function getRed(c: Color): number;
28
+ export declare function getGreen(c: Color): number;
29
+ export declare function getBlue(c: Color): number;
30
+ export declare function getAlpha(c: Color): number;
31
+ export declare function setRed(c: Color, value: number): number;
32
+ export declare function setGreen(c: Color, value: number): number;
33
+ export declare function setBlue(c: Color, value: number): number;
34
+ export declare function setAlpha(c: Color, value: number): number;