@jbrowse/core 1.5.8 → 1.6.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (155) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +91 -78
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +65 -57
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  4. package/BaseFeatureWidget/index.js +1 -1
  5. package/BaseFeatureWidget/index.test.js +4 -4
  6. package/BaseFeatureWidget/util.js +13 -9
  7. package/CorePlugin.js +32 -20
  8. package/Plugin.js +13 -11
  9. package/PluginLoader.js +38 -33
  10. package/PluginManager.d.ts +8 -5
  11. package/PluginManager.js +142 -53
  12. package/ReExports/index.js +4 -4
  13. package/ReExports/list.js +2 -2
  14. package/ReExports/material-ui-colors.js +20 -20
  15. package/ReExports/modules.d.ts +7 -5
  16. package/ReExports/modules.js +51 -47
  17. package/TextSearch/BaseResults.js +34 -24
  18. package/TextSearch/BaseResults.test.js +7 -3
  19. package/TextSearch/TextSearchManager.js +17 -15
  20. package/assemblyManager/assembly.js +39 -34
  21. package/assemblyManager/assemblyConfigSchema.js +2 -2
  22. package/assemblyManager/assemblyManager.js +20 -16
  23. package/assemblyManager/index.js +3 -3
  24. package/babel.config.d.ts +15 -0
  25. package/babel.config.js +19 -0
  26. package/configuration/configurationSchema.js +19 -17
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/index.d.ts +1 -0
  30. package/configuration/util.js +5 -5
  31. package/data_adapters/BaseAdapter.d.ts +15 -3
  32. package/data_adapters/BaseAdapter.js +216 -62
  33. package/data_adapters/BaseAdapter.test.js +30 -24
  34. package/data_adapters/CytobandAdapter.d.ts +1 -1
  35. package/data_adapters/CytobandAdapter.js +25 -19
  36. package/data_adapters/dataAdapterCache.js +9 -9
  37. package/package.json +3 -3
  38. package/pluggableElementTypes/AdapterType.js +31 -22
  39. package/pluggableElementTypes/ConnectionType.js +28 -18
  40. package/pluggableElementTypes/DisplayType.js +27 -17
  41. package/pluggableElementTypes/InternetAccountType.js +24 -14
  42. package/pluggableElementTypes/PluggableElementBase.js +10 -8
  43. package/pluggableElementTypes/RpcMethodType.d.ts +1 -1
  44. package/pluggableElementTypes/RpcMethodType.js +141 -118
  45. package/pluggableElementTypes/RpcMethodType.test.js +23 -17
  46. package/pluggableElementTypes/TextSearchAdapterType.js +25 -15
  47. package/pluggableElementTypes/TrackType.js +25 -15
  48. package/pluggableElementTypes/ViewType.js +25 -15
  49. package/pluggableElementTypes/WidgetType.js +27 -17
  50. package/pluggableElementTypes/index.js +11 -11
  51. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  52. package/pluggableElementTypes/models/BaseDisplayModel.js +8 -5
  53. package/pluggableElementTypes/models/BaseTrackModel.js +11 -8
  54. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  55. package/pluggableElementTypes/models/InternetAccountModel.d.ts +1 -1
  56. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  57. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  58. package/pluggableElementTypes/models/baseTrackConfig.js +7 -4
  59. package/pluggableElementTypes/models/index.js +4 -4
  60. package/pluggableElementTypes/renderers/BoxRendererType.js +49 -39
  61. package/pluggableElementTypes/renderers/CircularChordRendererType.js +18 -12
  62. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +35 -27
  63. package/pluggableElementTypes/renderers/FeatureRendererType.js +46 -36
  64. package/pluggableElementTypes/renderers/RendererType.js +31 -21
  65. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +12 -8
  66. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +1 -1
  67. package/pluggableElementTypes/renderers/ServerSideRendererType.js +45 -33
  68. package/pluggableElementTypes/renderers/index.js +8 -8
  69. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +10 -8
  70. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  71. package/rpc/BaseRpcDriver.js +43 -38
  72. package/rpc/BaseRpcDriver.test.js +63 -49
  73. package/rpc/MainThreadRpcDriver.js +32 -22
  74. package/rpc/RpcManager.js +19 -17
  75. package/rpc/WebWorkerRpcDriver.js +38 -28
  76. package/rpc/configSchema.js +2 -2
  77. package/rpc/coreRpcMethods.d.ts +16 -0
  78. package/rpc/coreRpcMethods.js +248 -121
  79. package/rpc/remoteAbortSignals.js +3 -3
  80. package/ui/AboutDialog.js +21 -17
  81. package/ui/App.js +42 -38
  82. package/ui/AssemblySelector.d.ts +1 -1
  83. package/ui/AssemblySelector.js +6 -6
  84. package/ui/Drawer.js +7 -7
  85. package/ui/DrawerWidget.d.ts +1 -1
  86. package/ui/DrawerWidget.js +37 -33
  87. package/ui/DropDownMenu.js +21 -9
  88. package/ui/EditableTypography.js +30 -19
  89. package/ui/ErrorMessage.js +5 -5
  90. package/ui/FactoryResetDialog.js +8 -8
  91. package/ui/FatalErrorDialog.js +29 -12
  92. package/ui/FatalErrorDialog.test.js +11 -11
  93. package/ui/FileSelector/FileSelector.js +42 -32
  94. package/ui/FileSelector/LocalFileChooser.js +9 -9
  95. package/ui/FileSelector/UrlChooser.js +4 -4
  96. package/ui/FileSelector/index.js +4 -4
  97. package/ui/Icons.js +9 -9
  98. package/ui/Logo.js +19 -19
  99. package/ui/Menu.js +46 -35
  100. package/ui/NewSessionCards.js +29 -19
  101. package/ui/PrerenderedCanvas.js +27 -10
  102. package/ui/ResizeHandle.js +17 -10
  103. package/ui/SanitizedHTML.js +5 -5
  104. package/ui/SanitizedHTML.test.js +4 -4
  105. package/ui/Snackbar.js +16 -12
  106. package/ui/SnackbarModel.js +1 -1
  107. package/ui/Tooltip.js +11 -7
  108. package/ui/ViewContainer.d.ts +2 -5
  109. package/ui/ViewContainer.js +44 -49
  110. package/ui/index.d.ts +1 -0
  111. package/ui/index.js +26 -13
  112. package/ui/theme.js +15 -11
  113. package/util/Base1DViewModel.d.ts +14 -12
  114. package/util/Base1DViewModel.js +51 -55
  115. package/util/Base1DViewModel.test.js +5 -5
  116. package/util/QuickLRU.js +31 -27
  117. package/util/aborting.js +26 -16
  118. package/util/analytics.d.ts +1 -0
  119. package/util/analytics.js +15 -7
  120. package/util/blockTypes.js +48 -36
  121. package/util/calculateDynamicBlocks.js +4 -4
  122. package/util/calculateDynamicBlocks.test.js +14 -10
  123. package/util/calculateStaticBlocks.js +1 -1
  124. package/util/calculateStaticBlocks.test.js +15 -15
  125. package/util/compositeMap.js +31 -27
  126. package/util/idMaker.js +4 -4
  127. package/util/index.d.ts +23 -1
  128. package/util/index.js +138 -44
  129. package/util/index.test.js +11 -7
  130. package/util/io/RemoteFileWithRangeCache.js +41 -29
  131. package/util/io/index.js +6 -6
  132. package/util/jexl.js +5 -5
  133. package/util/jexlStrings.js +2 -2
  134. package/util/jexlStrings.test.js +2 -2
  135. package/util/layouts/GranularRectLayout.js +33 -27
  136. package/util/layouts/GranularRectLayout.test.js +10 -10
  137. package/util/layouts/MultiLayout.js +19 -13
  138. package/util/layouts/PrecomputedLayout.js +16 -14
  139. package/util/layouts/PrecomputedMultiLayout.js +23 -17
  140. package/util/layouts/SceneGraph.js +18 -12
  141. package/util/layouts/index.js +6 -6
  142. package/util/offscreenCanvasPonyfill.js +31 -29
  143. package/util/offscreenCanvasUtils.js +6 -6
  144. package/util/range.test.js +20 -20
  145. package/util/rxjs.js +2 -2
  146. package/util/simpleFeature.js +23 -18
  147. package/util/simpleFeature.test.js +3 -3
  148. package/util/stats.d.ts +1 -1
  149. package/util/stats.js +11 -7
  150. package/util/stats.test.js +16 -16
  151. package/util/tracks.js +1 -3
  152. package/util/types/index.d.ts +1 -1
  153. package/util/types/index.js +36 -31
  154. package/util/types/mst.js +19 -15
  155. package/util/when.js +6 -6
@@ -1,64 +1,79 @@
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- var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
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- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
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- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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+ var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
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- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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  var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
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  var _tracks = require("../util/tracks");
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+ var _mobxStateTree = require("mobx-state-tree");
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+
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  var _types = require("../util/types");
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  var _remoteAbortSignals = require("../rpc/remoteAbortSignals");
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- /* eslint-disable @typescript-eslint/no-explicit-any */
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+ function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
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+
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+
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+ function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
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+
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+ function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
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+
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+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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+
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+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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+
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- var _super = (0, _createSuper2["default"])(RpcMethodType);
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+ var _super = _createSuper(RpcMethodType);
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  var _this;
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+ (0, _classCallCheck2.default)(this, RpcMethodType);
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  _this = _super.call(this, {
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  _this.pluginManager = pluginManager;
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- _this.name = 'UNKNOWN';
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'UNKNOWN');
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  return _this;
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+ (0, _createClass2.default)(RpcMethodType, [{
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  value: function () {
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- var _serializeArguments = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(args, _rpcDriverClassName) {
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@@ -67,7 +82,7 @@ var RpcMethodType = /*#__PURE__*/function (_PluggableElementBase) {
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+ loc.internetAccountPreAuthorization = _context2.sent;
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- var _deserializeArguments = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3(serializedArgs, _rpcDriverClassName) {
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  signal: (0, _remoteAbortSignals.deserializeAbortSignal)(signal)
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@@ -205,47 +219,47 @@ var RpcMethodType = /*#__PURE__*/function (_PluggableElementBase) {
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  value: function () {
208
- var _deserializeReturn = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee5(serializedReturn, _args, _rpcDriverClassName) {
209
- var r, _this$pluginManager, _this$pluginManager$r, retryAccount;
210
-
211
- return _index["default"].wrap(function _callee5$(_context5) {
222
+ var _deserializeReturn = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(serializedReturn, _args, _rpcDriverClassName) {
223
+ var r, rootModel, retryAccount;
224
+ return _regenerator.default.wrap(function _callee5$(_context5) {
212
225
  while (1) {
213
226
  switch (_context5.prev = _context5.next) {
214
227
  case 0:
215
- _context5.prev = 0;
216
- _context5.next = 3;
228
+ rootModel = this.pluginManager.rootModel;
229
+ _context5.prev = 1;
230
+ _context5.next = 4;
217
231
  return serializedReturn;
218
232
 
219
- case 3:
233
+ case 4:
220
234
  r = _context5.sent;
221
- _context5.next = 12;
235
+ _context5.next = 13;
222
236
  break;
223
237
 
224
- case 6:
225
- _context5.prev = 6;
226
- _context5.t0 = _context5["catch"](0);
238
+ case 7:
239
+ _context5.prev = 7;
240
+ _context5.t0 = _context5["catch"](1);
227
241
 
228
242
  if (!(0, _types.isAuthNeededException)(_context5.t0)) {
229
- _context5.next = 11;
243
+ _context5.next = 12;
230
244
  break;
231
245
  }
232
246
 
233
- retryAccount = // @ts-ignore
234
- (_this$pluginManager = this.pluginManager) === null || _this$pluginManager === void 0 ? void 0 : (_this$pluginManager$r = _this$pluginManager.rootModel) === null || _this$pluginManager$r === void 0 ? void 0 : _this$pluginManager$r.createEphemeralInternetAccount("HTTPBasicInternetAccount-".concat(new URL(_context5.t0.location.uri).origin), {}, _context5.t0.location);
247
+ // @ts-ignore
248
+ retryAccount = rootModel === null || rootModel === void 0 ? void 0 : rootModel.createEphemeralInternetAccount("HTTPBasicInternetAccount-".concat(new URL(_context5.t0.location.uri).origin), {}, _context5.t0.location);
235
249
  throw new _types.RetryError('Retrying with created internet account', retryAccount.internetAccountId);
236
250
 
237
- case 11:
251
+ case 12:
238
252
  throw _context5.t0;
239
253
 
240
- case 12:
254
+ case 13:
241
255
  return _context5.abrupt("return", r);
242
256
 
243
- case 13:
257
+ case 14:
244
258
  case "end":
245
259
  return _context5.stop();
246
260
  }
247
261
  }
248
- }, _callee5, this, [[0, 6]]);
262
+ }, _callee5, this, [[1, 7]]);
249
263
  }));
250
264
 
251
265
  function deserializeReturn(_x9, _x10, _x11) {
@@ -253,148 +267,157 @@ var RpcMethodType = /*#__PURE__*/function (_PluggableElementBase) {
253
267
  }
254
268
 
255
269
  return deserializeReturn;
256
- }()
270
+ }() // eslint-disable-next-line @typescript-eslint/no-explicit-any
271
+
257
272
  }, {
258
273
  key: "augmentLocationObjects",
259
274
  value: function () {
260
- var _augmentLocationObjects = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee6(thing) {
261
- var _iterator, _step, val, _i, _Object$entries, _Object$entries$_i, key, value, _iterator2, _step2, _val;
275
+ var _augmentLocationObjects = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(thing) {
276
+ var _iterator, _step, val, _i, _Object$values, value, _iterator2, _step2, _val;
262
277
 
263
- return _index["default"].wrap(function _callee6$(_context6) {
278
+ return _regenerator.default.wrap(function _callee6$(_context6) {
264
279
  while (1) {
265
280
  switch (_context6.prev = _context6.next) {
266
281
  case 0:
282
+ if (!((0, _mobxStateTree.isStateTreeNode)(thing) && !(0, _mobxStateTree.isAlive)(thing))) {
283
+ _context6.next = 2;
284
+ break;
285
+ }
286
+
287
+ return _context6.abrupt("return", thing);
288
+
289
+ case 2:
267
290
  if (!(0, _types.isUriLocation)(thing)) {
268
- _context6.next = 3;
291
+ _context6.next = 5;
269
292
  break;
270
293
  }
271
294
 
272
- _context6.next = 3;
295
+ _context6.next = 5;
273
296
  return this.serializeNewAuthArguments(thing);
274
297
 
275
- case 3:
298
+ case 5:
276
299
  if (!Array.isArray(thing)) {
277
- _context6.next = 21;
300
+ _context6.next = 23;
278
301
  break;
279
302
  }
280
303
 
281
- _iterator = (0, _createForOfIteratorHelper2["default"])(thing);
282
- _context6.prev = 5;
304
+ _iterator = _createForOfIteratorHelper(thing);
305
+ _context6.prev = 7;
283
306
 
284
307
  _iterator.s();
285
308
 
286
- case 7:
309
+ case 9:
287
310
  if ((_step = _iterator.n()).done) {
288
- _context6.next = 13;
311
+ _context6.next = 15;
289
312
  break;
290
313
  }
291
314
 
292
315
  val = _step.value;
293
- _context6.next = 11;
316
+ _context6.next = 13;
294
317
  return this.augmentLocationObjects(val);
295
318
 
296
- case 11:
297
- _context6.next = 7;
298
- break;
299
-
300
319
  case 13:
301
- _context6.next = 18;
320
+ _context6.next = 9;
302
321
  break;
303
322
 
304
323
  case 15:
305
- _context6.prev = 15;
306
- _context6.t0 = _context6["catch"](5);
324
+ _context6.next = 20;
325
+ break;
326
+
327
+ case 17:
328
+ _context6.prev = 17;
329
+ _context6.t0 = _context6["catch"](7);
307
330
 
308
331
  _iterator.e(_context6.t0);
309
332
 
310
- case 18:
311
- _context6.prev = 18;
333
+ case 20:
334
+ _context6.prev = 20;
312
335
 
313
336
  _iterator.f();
314
337
 
315
- return _context6.finish(18);
338
+ return _context6.finish(20);
316
339
 
317
- case 21:
318
- if (!((0, _typeof2["default"])(thing) === 'object' && thing !== null)) {
319
- _context6.next = 51;
340
+ case 23:
341
+ if (!((0, _typeof2.default)(thing) === 'object' && thing !== null)) {
342
+ _context6.next = 53;
320
343
  break;
321
344
  }
322
345
 
323
- _i = 0, _Object$entries = Object.entries(thing);
346
+ _i = 0, _Object$values = Object.values(thing);
324
347
 
325
- case 23:
326
- if (!(_i < _Object$entries.length)) {
327
- _context6.next = 51;
348
+ case 25:
349
+ if (!(_i < _Object$values.length)) {
350
+ _context6.next = 53;
328
351
  break;
329
352
  }
330
353
 
331
- _Object$entries$_i = (0, _slicedToArray2["default"])(_Object$entries[_i], 2), key = _Object$entries$_i[0], value = _Object$entries$_i[1];
354
+ value = _Object$values[_i];
332
355
 
333
356
  if (!Array.isArray(value)) {
334
- _context6.next = 45;
357
+ _context6.next = 47;
335
358
  break;
336
359
  }
337
360
 
338
- _iterator2 = (0, _createForOfIteratorHelper2["default"])(thing[key]);
339
- _context6.prev = 27;
361
+ _iterator2 = _createForOfIteratorHelper(value);
362
+ _context6.prev = 29;
340
363
 
341
364
  _iterator2.s();
342
365
 
343
- case 29:
366
+ case 31:
344
367
  if ((_step2 = _iterator2.n()).done) {
345
- _context6.next = 35;
368
+ _context6.next = 37;
346
369
  break;
347
370
  }
348
371
 
349
372
  _val = _step2.value;
350
- _context6.next = 33;
373
+ _context6.next = 35;
351
374
  return this.augmentLocationObjects(_val);
352
375
 
353
- case 33:
354
- _context6.next = 29;
355
- break;
356
-
357
376
  case 35:
358
- _context6.next = 40;
377
+ _context6.next = 31;
359
378
  break;
360
379
 
361
380
  case 37:
362
- _context6.prev = 37;
363
- _context6.t1 = _context6["catch"](27);
381
+ _context6.next = 42;
382
+ break;
383
+
384
+ case 39:
385
+ _context6.prev = 39;
386
+ _context6.t1 = _context6["catch"](29);
364
387
 
365
388
  _iterator2.e(_context6.t1);
366
389
 
367
- case 40:
368
- _context6.prev = 40;
390
+ case 42:
391
+ _context6.prev = 42;
369
392
 
370
393
  _iterator2.f();
371
394
 
372
- return _context6.finish(40);
395
+ return _context6.finish(42);
373
396
 
374
- case 43:
375
- _context6.next = 48;
397
+ case 45:
398
+ _context6.next = 50;
376
399
  break;
377
400
 
378
- case 45:
379
- if (!((0, _typeof2["default"])(value) === 'object' && value !== null)) {
380
- _context6.next = 48;
401
+ case 47:
402
+ if (!((0, _typeof2.default)(value) === 'object' && value !== null)) {
403
+ _context6.next = 50;
381
404
  break;
382
405
  }
383
406
 
384
- _context6.next = 48;
385
- return this.augmentLocationObjects(thing[key]);
407
+ _context6.next = 50;
408
+ return this.augmentLocationObjects(value);
386
409
 
387
- case 48:
410
+ case 50:
388
411
  _i++;
389
- _context6.next = 23;
412
+ _context6.next = 25;
390
413
  break;
391
414
 
392
- case 51:
415
+ case 53:
393
416
  case "end":
394
417
  return _context6.stop();
395
418
  }
396
419
  }
397
- }, _callee6, this, [[5, 15, 18, 21], [27, 37, 40, 43]]);
420
+ }, _callee6, this, [[7, 17, 20, 23], [29, 39, 42, 45]]);
398
421
  }));
399
422
 
400
423
  function augmentLocationObjects(_x12) {
@@ -405,6 +428,6 @@ var RpcMethodType = /*#__PURE__*/function (_PluggableElementBase) {
405
428
  }()
406
429
  }]);
407
430
  return RpcMethodType;
408
- }(_PluggableElementBase2["default"]);
431
+ }(_PluggableElementBase2.default);
409
432
 
410
- exports["default"] = RpcMethodType;
433
+ exports.default = RpcMethodType;
@@ -1,45 +1,51 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.MockRpcMethodType = void 0;
9
9
 
10
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
10
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
13
13
 
14
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
14
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
15
15
 
16
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
16
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
17
17
 
18
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
18
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
19
19
 
20
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
20
+ var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
21
+
22
+ var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
21
23
 
22
24
  var _PluginManager = _interopRequireDefault(require("../PluginManager"));
23
25
 
24
26
  var _RpcMethodType2 = _interopRequireDefault(require("./RpcMethodType"));
25
27
 
26
- var pluginManager = new _PluginManager["default"]();
28
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
29
+
30
+ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
31
+
32
+ var pluginManager = new _PluginManager.default();
27
33
 
28
34
  var MockRpcMethodType = /*#__PURE__*/function (_RpcMethodType) {
29
- (0, _inherits2["default"])(MockRpcMethodType, _RpcMethodType);
35
+ (0, _inherits2.default)(MockRpcMethodType, _RpcMethodType);
30
36
 
31
- var _super = (0, _createSuper2["default"])(MockRpcMethodType);
37
+ var _super = _createSuper(MockRpcMethodType);
32
38
 
33
39
  function MockRpcMethodType() {
34
- (0, _classCallCheck2["default"])(this, MockRpcMethodType);
40
+ (0, _classCallCheck2.default)(this, MockRpcMethodType);
35
41
  return _super.apply(this, arguments);
36
42
  }
37
43
 
38
- (0, _createClass2["default"])(MockRpcMethodType, [{
44
+ (0, _createClass2.default)(MockRpcMethodType, [{
39
45
  key: "execute",
40
46
  value: function () {
41
- var _execute = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
42
- return _index["default"].wrap(function _callee$(_context) {
47
+ var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
48
+ return _regenerator.default.wrap(function _callee$(_context) {
43
49
  while (1) {
44
50
  switch (_context.prev = _context.next) {
45
51
  case 0:
@@ -58,12 +64,12 @@ var MockRpcMethodType = /*#__PURE__*/function (_RpcMethodType) {
58
64
  }()
59
65
  }]);
60
66
  return MockRpcMethodType;
61
- }(_RpcMethodType2["default"]);
67
+ }(_RpcMethodType2.default);
62
68
 
63
69
  exports.MockRpcMethodType = MockRpcMethodType;
64
- test('test serialize arguments with augmentLocationObject', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
70
+ test('test serialize arguments with augmentLocationObject', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
65
71
  var mockRpc, locationInAdapter, deeplyNestedLocation;
66
- return _index["default"].wrap(function _callee2$(_context2) {
72
+ return _regenerator.default.wrap(function _callee2$(_context2) {
67
73
  while (1) {
68
74
  switch (_context2.prev = _context2.next) {
69
75
  case 0:
@@ -1,35 +1,45 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
10
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
11
11
 
12
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
12
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
13
13
 
14
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
14
+ var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
15
15
 
16
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
16
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
17
+
18
+ var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
19
+
20
+ var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
21
+
22
+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
17
23
 
18
24
  var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
19
25
 
26
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
27
+
28
+ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
29
+
20
30
  var TextSearchAdapterType = /*#__PURE__*/function (_PluggableElementBase) {
21
- (0, _inherits2["default"])(TextSearchAdapterType, _PluggableElementBase);
31
+ (0, _inherits2.default)(TextSearchAdapterType, _PluggableElementBase);
22
32
 
23
- var _super = (0, _createSuper2["default"])(TextSearchAdapterType);
33
+ var _super = _createSuper(TextSearchAdapterType);
24
34
 
25
35
  function TextSearchAdapterType(stuff) {
26
36
  var _this;
27
37
 
28
- (0, _classCallCheck2["default"])(this, TextSearchAdapterType);
38
+ (0, _classCallCheck2.default)(this, TextSearchAdapterType);
29
39
  _this = _super.call(this, stuff);
30
- _this.AdapterClass = void 0;
31
- _this.configSchema = void 0;
32
- _this.description = void 0;
40
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "AdapterClass", void 0);
41
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "configSchema", void 0);
42
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "description", void 0);
33
43
  _this.description = stuff.description;
34
44
  _this.configSchema = stuff.configSchema;
35
45
  _this.AdapterClass = stuff.AdapterClass;
@@ -41,7 +51,7 @@ var TextSearchAdapterType = /*#__PURE__*/function (_PluggableElementBase) {
41
51
  return _this;
42
52
  }
43
53
 
44
- return (0, _createClass2["default"])(TextSearchAdapterType);
45
- }(_PluggableElementBase2["default"]);
54
+ return (0, _createClass2.default)(TextSearchAdapterType);
55
+ }(_PluggableElementBase2.default);
46
56
 
47
- exports["default"] = TextSearchAdapterType;
57
+ exports.default = TextSearchAdapterType;