@jbrowse/core 1.5.8 → 1.6.2

package/util/Base1DViewModel.js

@@ -1,13 +1,13 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -19,13 +19,17 @@ var _calculateDynamicBlocks = _interopRequireDefault(require("./calculateDynamic
 
 var _calculateStaticBlocks = _interopRequireDefault(require("./calculateStaticBlocks"));
 
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
 var Base1DView = _mobxStateTree.types.model('Base1DView', {
   displayedRegions: _mobxStateTree.types.array(_mst.Region),
   bpPerPx: 0,
   offsetPx: 0,
   interRegionPaddingWidth: _mobxStateTree.types.optional(_mobxStateTree.types.number, 0),
   minimumBlockWidth: _mobxStateTree.types.optional(_mobxStateTree.types.number, 0)
-})["volatile"](function () {
+}).volatile(function () {
   return {
     features: undefined,
     volatileWidth: 0
@@ -72,50 +76,6 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
       }, 0);
     },
 
-    /**
-     * calculates the Px at which coord is found.
-     *
-     * @param refName - string, refName of region
-     * @param coord - number, bp to be translated to Px
-     * @param regionNumber - number, index of displayedRegion in displayedRegions array
-     */
-    bpToPx: function bpToPx(_ref) {
-      var _this = this;
-
-      var refName = _ref.refName,
-          coord = _ref.coord,
-          regionNumber = _ref.regionNumber;
-      var offsetBp = 0;
-      var interRegionPaddingBp = self.interRegionPaddingWidth * self.bpPerPx;
-      var minimumBlockBp = self.minimumBlockWidth * self.bpPerPx;
-      var index = self.displayedRegions.findIndex(function (region, idx) {
-        var len = region.end - region.start;
-
-        if (refName === region.refName && coord >= region.start && coord <= region.end) {
-          if (regionNumber ? regionNumber === idx : true) {
-            offsetBp += region.reversed ? region.end - coord : coord - region.start;
-            return true;
-          }
-        } // add the interRegionPaddingWidth if the boundary is in the screen
-        // e.g. offset>0 && offset<width
-
-
-        if (region.end - region.start > minimumBlockBp && offsetBp / self.bpPerPx > 0 && offsetBp / self.bpPerPx < _this.width) {
-          offsetBp += len + interRegionPaddingBp;
-        } else {
-          offsetBp += len;
-        }
-
-        return false;
-      });
-      var foundRegion = self.displayedRegions[index];
-
-      if (foundRegion) {
-        return Math.round(offsetBp / self.bpPerPx);
-      }
-
-      return undefined;
-    },
     pxToBp: function pxToBp(px) {
       var bpSoFar = 0;
       var bp = (self.offsetPx + px) * self.bpPerPx;
@@ -124,7 +84,7 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
       if (bp < 0) {
         var region = self.displayedRegions[0];
         var offset = bp;
-        return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, (0, _mobxStateTree.getSnapshot)(region)), {}, {
+        return _objectSpread(_objectSpread({}, (0, _mobxStateTree.getSnapshot)(region)), {}, {
           oob: true,
           coord: region.reversed ? Math.floor(region.end - offset) + 1 : Math.floor(region.start + offset) + 1,
           offset: offset,
@@ -142,7 +102,7 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
         var _offset = bp - bpSoFar;
 
         if (len + bpSoFar > bp && bpSoFar <= bp) {
-          return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, (0, _mobxStateTree.getSnapshot)(_region)), {}, {
+          return _objectSpread(_objectSpread({}, (0, _mobxStateTree.getSnapshot)(_region)), {}, {
             oob: false,
             offset: _offset,
             coord: _region.reversed ? Math.floor(_region.end - _offset) + 1 : Math.floor(_region.start + _offset) + 1,
@@ -166,7 +126,7 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
 
         var _offset2 = bp - bpSoFar + _len;
 
-        return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, (0, _mobxStateTree.getSnapshot)(_region2)), {}, {
+        return _objectSpread(_objectSpread({}, (0, _mobxStateTree.getSnapshot)(_region2)), {}, {
           oob: true,
           offset: _offset2,
           coord: _region2.reversed ? Math.floor(_region2.end - _offset2) + 1 : Math.floor(_region2.start + _offset2) + 1,
@@ -189,11 +149,11 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
 }).views(function (self) {
   return {
     get dynamicBlocks() {
-      return (0, _calculateDynamicBlocks["default"])(self);
+      return (0, _calculateDynamicBlocks.default)(self);
     },
 
     get staticBlocks() {
-      return (0, _calculateStaticBlocks["default"])(self);
+      return (0, _calculateStaticBlocks.default)(self);
     },
 
     get currBp() {
@@ -202,8 +162,28 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
       }).reduce(function (a, b) {
         return a + b;
       }, 0);
-    }
+    },
 
+    /**
+     * calculates the Px at which coord is found.
+     *
+     * @param refName - string, refName of region
+     * @param coord - number, bp to be translated to Px
+     * @param regionNumber - number, index of displayedRegion in displayedRegions array
+     */
+    bpToPx: function bpToPx(_ref) {
+      var _viewBpToPx;
+
+      var refName = _ref.refName,
+          coord = _ref.coord,
+          regionNumber = _ref.regionNumber;
+      return (_viewBpToPx = (0, _index.viewBpToPx)({
+        refName: refName,
+        coord: coord,
+        regionNumber: regionNumber,
+        self: self
+      })) === null || _viewBpToPx === void 0 ? void 0 : _viewBpToPx.offsetPx;
+    }
   };
 }).actions(function (self) {
   return {
@@ -311,6 +291,22 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
 
       self.offsetPx = (0, _index.clamp)(Math.round((self.offsetPx + offset) * oldBpPerPx / bpPerPx - offset), self.minOffset, self.maxOffset);
     },
+    scrollTo: function scrollTo(offsetPx) {
+      var newOffsetPx = (0, _index.clamp)(offsetPx, self.minOffset, self.maxOffset);
+      self.offsetPx = newOffsetPx;
+      return newOffsetPx;
+    },
+    centerAt: function centerAt(bp, refName, regionIndex) {
+      var centerPx = self.bpToPx({
+        refName: refName,
+        coord: bp,
+        regionNumber: regionIndex
+      });
+
+      if (centerPx) {
+        this.scrollTo(Math.round(centerPx - self.width / 2));
+      }
+    },
     scroll: function scroll(distance) {
       var oldOffsetPx = self.offsetPx; // the scroll is clamped to keep the linear genome on the main screen
 
@@ -322,4 +318,4 @@ var Base1DView = _mobxStateTree.types.model('Base1DView', {
 });
 
 var _default = Base1DView;
-exports["default"] = _default;
+exports.default = _default;

package/util/Base1DViewModel.test.js

@@ -1,11 +1,11 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 var _Base1DViewModel = _interopRequireDefault(require("./Base1DViewModel"));
 
 test('create Base1DView and set displayedRegions', function () {
-  var model = _Base1DViewModel["default"].create({
+  var model = _Base1DViewModel.default.create({
     bpPerPx: 1,
     offsetPx: 0
   });
@@ -28,7 +28,7 @@ test('create Base1DView and set displayedRegions', function () {
   expect(model.displayedRegions).toBeTruthy();
 });
 test('Able to set bpPerPx, width and calculate widths', function () {
-  var model = _Base1DViewModel["default"].create({
+  var model = _Base1DViewModel.default.create({
     bpPerPx: 0,
     offsetPx: 0
   });
@@ -56,7 +56,7 @@ test('Able to set bpPerPx, width and calculate widths', function () {
   expect(model.minimumBlockWidth).toEqual(0);
 });
 test('Able to set and showAll Regions', function () {
-  var model = _Base1DViewModel["default"].create({
+  var model = _Base1DViewModel.default.create({
     bpPerPx: 0,
     offsetPx: 0
   });
@@ -85,7 +85,7 @@ test('Able to set and showAll Regions', function () {
   expect(model.bpPerPx).toEqual(53);
 });
 test('Navigate to displayedRegions', function () {
-  var model = _Base1DViewModel["default"].create({
+  var model = _Base1DViewModel.default.create({
     bpPerPx: 0,
     offsetPx: 0
   });

package/util/QuickLRU.js

@@ -1,21 +1,25 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
+
+function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
+
+function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
 
 /* eslint-disable no-underscore-dangle */
 
@@ -27,7 +31,7 @@ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/no
 var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
   function QuickLRU() {
     var options = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {};
-    (0, _classCallCheck2["default"])(this, QuickLRU);
+    (0, _classCallCheck2.default)(this, QuickLRU);
 
     if (!(options.maxSize && options.maxSize > 0)) {
       throw new TypeError('`maxSize` must be a number greater than 0');
@@ -39,7 +43,7 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
     this._size = 0;
   }
 
-  (0, _createClass2["default"])(QuickLRU, [{
+  (0, _createClass2.default)(QuickLRU, [{
     key: "_set",
     value: function _set(key, value) {
       this.cache.set(key, value);
@@ -60,7 +64,7 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
 
       if (this.oldCache.has(key)) {
         var value = this.oldCache.get(key);
-        this.oldCache["delete"](key);
+        this.oldCache.delete(key);
 
         this._set(key, value);
 
@@ -101,13 +105,13 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
   }, {
     key: "delete",
     value: function _delete(key) {
-      var deleted = this.cache["delete"](key);
+      var deleted = this.cache.delete(key);
 
       if (deleted) {
         this._size -= 1;
       }
 
-      return this.oldCache["delete"](key) || deleted;
+      return this.oldCache.delete(key) || deleted;
     }
   }, {
     key: "clear",
@@ -118,14 +122,14 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
     }
   }, {
     key: "keys",
-    value: /*#__PURE__*/_index["default"].mark(function keys() {
+    value: /*#__PURE__*/_regenerator.default.mark(function keys() {
       var _iterator, _step, _step$value, key;
 
-      return _index["default"].wrap(function keys$(_context) {
+      return _regenerator.default.wrap(function keys$(_context) {
         while (1) {
           switch (_context.prev = _context.next) {
             case 0:
-              _iterator = (0, _createForOfIteratorHelper2["default"])(this);
+              _iterator = _createForOfIteratorHelper(this);
               _context.prev = 1;
 
               _iterator.s();
@@ -136,7 +140,7 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
                 break;
               }
 
-              _step$value = (0, _slicedToArray2["default"])(_step.value, 1), key = _step$value[0];
+              _step$value = (0, _slicedToArray2.default)(_step.value, 1), key = _step$value[0];
               _context.next = 7;
               return key;
 
@@ -170,14 +174,14 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
     })
   }, {
     key: "values",
-    value: /*#__PURE__*/_index["default"].mark(function values() {
+    value: /*#__PURE__*/_regenerator.default.mark(function values() {
       var _iterator2, _step2, _step2$value, value;
 
-      return _index["default"].wrap(function values$(_context2) {
+      return _regenerator.default.wrap(function values$(_context2) {
         while (1) {
           switch (_context2.prev = _context2.next) {
             case 0:
-              _iterator2 = (0, _createForOfIteratorHelper2["default"])(this);
+              _iterator2 = _createForOfIteratorHelper(this);
               _context2.prev = 1;
 
               _iterator2.s();
@@ -188,7 +192,7 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
                 break;
               }
 
-              _step2$value = (0, _slicedToArray2["default"])(_step2.value, 2), value = _step2$value[1];
+              _step2$value = (0, _slicedToArray2.default)(_step2.value, 2), value = _step2$value[1];
               _context2.next = 7;
               return value;
 
@@ -222,14 +226,14 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
     })
   }, {
     key: _Symbol$iterator,
-    value: /*#__PURE__*/_index["default"].mark(function value() {
+    value: /*#__PURE__*/_regenerator.default.mark(function value() {
       var _iterator3, _step3, item, _iterator4, _step4, _item, _item2, key;
 
-      return _index["default"].wrap(function value$(_context3) {
+      return _regenerator.default.wrap(function value$(_context3) {
         while (1) {
           switch (_context3.prev = _context3.next) {
             case 0:
-              _iterator3 = (0, _createForOfIteratorHelper2["default"])(this.cache);
+              _iterator3 = _createForOfIteratorHelper(this.cache);
               _context3.prev = 1;
 
               _iterator3.s();
@@ -266,7 +270,7 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
               return _context3.finish(14);
 
             case 17:
-              _iterator4 = (0, _createForOfIteratorHelper2["default"])(this.oldCache);
+              _iterator4 = _createForOfIteratorHelper(this.oldCache);
               _context3.prev = 18;
 
               _iterator4.s();
@@ -278,7 +282,7 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
               }
 
               _item = _step4.value;
-              _item2 = (0, _slicedToArray2["default"])(_item, 1), key = _item2[0];
+              _item2 = (0, _slicedToArray2.default)(_item, 1), key = _item2[0];
 
               if (this.cache.has(key)) {
                 _context3.next = 26;
@@ -321,7 +325,7 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
     get: function get() {
       var oldCacheSize = 0;
 
-      var _iterator5 = (0, _createForOfIteratorHelper2["default"])(this.oldCache.keys()),
+      var _iterator5 = _createForOfIteratorHelper(this.oldCache.keys()),
           _step5;
 
       try {
@@ -345,4 +349,4 @@ var QuickLRU = /*#__PURE__*/function (_Symbol$iterator) {
 }(Symbol.iterator);
 
 var _default = QuickLRU;
-exports["default"] = _default;
+exports.default = _default;

package/util/aborting.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -11,43 +11,53 @@ exports.isAbortException = isAbortException;
 exports.makeAbortError = makeAbortError;
 exports.observeAbortSignal = observeAbortSignal;
 
-var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
-var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
+var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
 
-var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
+var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
 
-var _wrapNativeSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/wrapNativeSuper.js"));
+var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
+
+var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
+
+var _wrapNativeSuper2 = _interopRequireDefault(require("@babel/runtime/helpers/wrapNativeSuper"));
+
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _rxjs = require("rxjs");
 
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
+
+function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
+
 var AbortError = /*#__PURE__*/function (_Error) {
-  (0, _inherits2["default"])(AbortError, _Error);
+  (0, _inherits2.default)(AbortError, _Error);
 
-  var _super = (0, _createSuper2["default"])(AbortError);
+  var _super = _createSuper(AbortError);
 
   function AbortError() {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, AbortError);
+    (0, _classCallCheck2.default)(this, AbortError);
 
     for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
       args[_key] = arguments[_key];
     }
 
     _this = _super.call.apply(_super, [this].concat(args));
-    _this.code = void 0;
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "code", void 0);
     return _this;
   }
 
-  return (0, _createClass2["default"])(AbortError);
-}( /*#__PURE__*/(0, _wrapNativeSuper2["default"])(Error));
+  return (0, _createClass2.default)(AbortError);
+}( /*#__PURE__*/(0, _wrapNativeSuper2.default)(Error));
 /**
  * properly check if the given AbortSignal is aborted.
  * per the standard, if the signal reads as aborted,
@@ -92,8 +102,8 @@ function abortBreakPoint(_x) {
 }
 
 function _abortBreakPoint() {
-  _abortBreakPoint = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(signal) {
-    return _index["default"].wrap(function _callee$(_context) {
+  _abortBreakPoint = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(signal) {
+    return _regenerator.default.wrap(function _callee$(_context) {
       while (1) {
         switch (_context.prev = _context.next) {
           case 0:

package/util/analytics.d.ts

@@ -1,2 +1,3 @@
 export declare function writeAWSAnalytics(rootModel: any, initialTimeStamp: number, sessionQuery?: string | null): Promise<void>;
 export declare function writeGAAnalytics(rootModel: any, initialTimestamp: number): Promise<void>;
+export declare function doAnalytics(rootModel: any, initialTimestamp: number, initialSessionQuery: string | null | undefined): void;

package/util/analytics.js

@@ -1,16 +1,17 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
+exports.doAnalytics = doAnalytics;
 exports.writeAWSAnalytics = writeAWSAnalytics;
 exports.writeGAAnalytics = writeGAAnalytics;
 
-var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
+var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
+var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
 
 var _configuration = require("../configuration");
 
@@ -22,9 +23,9 @@ function writeAWSAnalytics(_x, _x2, _x3) {
 }
 
 function _writeAWSAnalytics() {
-  _writeAWSAnalytics = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(rootModel, initialTimeStamp, sessionQuery) {
+  _writeAWSAnalytics = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(rootModel, initialTimeStamp, sessionQuery) {
     var url, multiAssemblyTracks, savedSessionCount, config, session, ver, tracks, assemblies, plugins, stats, qs;
-    return _index["default"].wrap(function _callee$(_context) {
+    return _regenerator.default.wrap(function _callee$(_context) {
       while (1) {
         switch (_context.prev = _context.next) {
           case 0:
@@ -104,11 +105,11 @@ function writeGAAnalytics(_x4, _x5) {
 }
 
 function _writeGAAnalytics() {
-  _writeGAAnalytics = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(rootModel, initialTimestamp) {
+  _writeGAAnalytics = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(rootModel, initialTimestamp) {
     var _rootModel$jbrowse$pl;
 
     var jbrowseUser, stats, analyticsScript, gaData, googleDimensions, analyticsScriptNode;
-    return _index["default"].wrap(function _callee2$(_context2) {
+    return _regenerator.default.wrap(function _callee2$(_context2) {
       while (1) {
         switch (_context2.prev = _context2.next) {
           case 0:
@@ -148,4 +149,11 @@ function _writeGAAnalytics() {
     }, _callee2);
   }));
   return _writeGAAnalytics.apply(this, arguments);
+}
+
+function doAnalytics(rootModel, initialTimestamp, initialSessionQuery) {
+  if (rootModel && !(0, _configuration.readConfObject)(rootModel.jbrowse.configuration, 'disableAnalytics')) {
+    writeAWSAnalytics(rootModel, initialTimestamp, initialSessionQuery);
+    writeGAAnalytics(rootModel, initialTimestamp);
+  }
 }