@jbrowse/core 1.5.8 → 1.6.2

package/ui/SanitizedHTML.test.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 var _react = _interopRequireDefault(require("react"));
 
@@ -11,7 +11,7 @@ var _react2 = require("@testing-library/react");
 var _SanitizedHTML = _interopRequireDefault(require("./SanitizedHTML"));
 
 test('test basic escaping with bold', function () {
-  var _render = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_SanitizedHTML["default"], {
+  var _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_SanitizedHTML.default, {
     html: "<b>Test</b"
   })),
       getByText = _render.getByText;
@@ -19,7 +19,7 @@ test('test basic escaping with bold', function () {
   expect(getByText('Test')).toBeInTheDocument();
 });
 test('test escaping', function () {
-  var _render2 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_SanitizedHTML["default"], {
+  var _render2 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_SanitizedHTML.default, {
     html: "<bb>Test</b"
   })),
       getByText = _render2.getByText;
@@ -27,7 +27,7 @@ test('test escaping', function () {
   expect(getByText('<bb>Test</b')).toBeInTheDocument();
 });
 test('test <TRA>', function () {
-  var _render3 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(_SanitizedHTML["default"], {
+  var _render3 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(_SanitizedHTML.default, {
     html: "<TRA><DEL><INS><DEL:ME>"
   })),
       getByText = _render3.getByText;

package/ui/Snackbar.js

@@ -1,15 +1,15 @@
 "use strict";
 
-var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _typeof = require("@babel/runtime/helpers/typeof");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
 var _react = _interopRequireWildcard(require("react"));
 
@@ -21,16 +21,20 @@ var _Alert = _interopRequireDefault(require("@material-ui/lab/Alert"));
 
 var _mobxReact = require("mobx-react");
 
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+
 function MessageSnackbar(_ref) {
   var session = _ref.session;
 
   var _useState = (0, _react.useState)(false),
-      _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
       open = _useState2[0],
       setOpen = _useState2[1];
 
   var _useState3 = (0, _react.useState)(),
-      _useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
+      _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
       snackbarMessage = _useState4[0],
       setSnackbarMessage = _useState4[1];
 
@@ -70,19 +74,19 @@ function MessageSnackbar(_ref) {
   };
 
   var _ref2 = snackbarMessage || [],
-      _ref3 = (0, _slicedToArray2["default"])(_ref2, 2),
+      _ref3 = (0, _slicedToArray2.default)(_ref2, 2),
       message = _ref3[0],
       level = _ref3[1];
 
-  return /*#__PURE__*/_react["default"].createElement(_core.Snackbar, {
+  return /*#__PURE__*/_react.default.createElement(_core.Snackbar, {
     open: open && !!message,
     onClose: handleClose,
-    action: /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
+    action: /*#__PURE__*/_react.default.createElement(_core.IconButton, {
       "aria-label": "close",
       color: "inherit",
       onClick: handleClose
-    }, /*#__PURE__*/_react["default"].createElement(_Close["default"], null))
-  }, /*#__PURE__*/_react["default"].createElement(_Alert["default"], {
+    }, /*#__PURE__*/_react.default.createElement(_Close.default, null))
+  }, /*#__PURE__*/_react.default.createElement(_Alert.default, {
     onClose: handleClose,
     severity: level || 'warning'
   }, message));
@@ -90,4 +94,4 @@ function MessageSnackbar(_ref) {
 
 var _default = (0, _mobxReact.observer)(MessageSnackbar);
 
-exports["default"] = _default;
+exports.default = _default;

package/ui/SnackbarModel.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = addSnackbarToModel;
+exports.default = addSnackbarToModel;
 
 var _mobx = require("mobx");
 

package/ui/Tooltip.js

@@ -1,15 +1,15 @@
 "use strict";
 
-var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _typeof = require("@babel/runtime/helpers/typeof");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
 var _react = _interopRequireWildcard(require("react"));
 
@@ -19,6 +19,10 @@ var _mobxReact = require("mobx-react");
 
 var _configuration = require("../configuration");
 
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+
 var useStyles = (0, _styles.makeStyles)({
   hoverLabel: {
     border: '1px solid black',
@@ -39,7 +43,7 @@ var Tooltip = function Tooltip(_ref) {
   var classes = useStyles();
 
   var _useState = (0, _react.useState)(false),
-      _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
       shown = _useState2[0],
       setShown = _useState2[1];
 
@@ -58,7 +62,7 @@ var Tooltip = function Tooltip(_ref) {
     var text = (0, _configuration.readConfObject)(configuration, 'mouseover', {
       feature: feature
     });
-    return /*#__PURE__*/_react["default"].createElement("div", {
+    return /*#__PURE__*/_react.default.createElement("div", {
       className: classes.hoverLabel,
       style: {
         left: offsetX,
@@ -72,4 +76,4 @@ var Tooltip = function Tooltip(_ref) {
 
 var _default = (0, _mobxReact.observer)(Tooltip);
 
-exports["default"] = _default;
+exports.default = _default;

package/ui/ViewContainer.d.ts

@@ -1,12 +1,9 @@
 import React from 'react';
-import { ContentRect } from 'react-measure';
 import { IBaseViewModel } from '../pluggableElementTypes/models';
 declare const _default: React.ComponentType<{
     view: IBaseViewModel;
-    onClose: () => void;
     style: React.CSSProperties;
     children: React.ReactNode;
-    contentRect: ContentRect;
-    measureRef: React.RefObject<HTMLDivElement>;
-}>;
+    onClose: () => void;
+} & import("react-sizeme").WithSizeProps>;
 export default _default;

package/ui/ViewContainer.js

@@ -1,38 +1,46 @@
 "use strict";
 
-var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _typeof = require("@babel/runtime/helpers/typeof");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
-var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
+var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
 
-var _core = require("@material-ui/core");
-
-var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _Menu = _interopRequireDefault(require("@material-ui/icons/Menu"));
+var _react = _interopRequireWildcard(require("react"));
 
-var _styles = require("@material-ui/core/styles");
+var _core = require("@material-ui/core");
 
 var _mobxReact = require("mobx-react");
 
 var _mobxStateTree = require("mobx-state-tree");
 
-var _react = _interopRequireWildcard(require("react"));
+var _reactSizeme = require("react-sizeme");
+
+var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
 
-var _reactMeasure = require("react-measure");
+var _Menu = _interopRequireDefault(require("@material-ui/icons/Menu"));
 
 var _EditableTypography = _interopRequireDefault(require("./EditableTypography"));
 
 var _Menu2 = _interopRequireDefault(require("./Menu"));
 
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
 var useStyles = (0, _core.makeStyles)(function (theme) {
   return {
     viewContainer: {
@@ -48,7 +56,7 @@ var useStyles = (0, _core.makeStyles)(function (theme) {
     },
     iconRoot: {
       '&:hover': {
-        backgroundColor: (0, _styles.alpha)(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
+        backgroundColor: (0, _core.alpha)(theme.palette.secondary.contrastText, theme.palette.action.hoverOpacity),
         '@media (hover: none)': {
           backgroundColor: 'transparent'
         }
@@ -78,14 +86,14 @@ var ViewMenu = (0, _mobxReact.observer)(function (_ref) {
       IconProps = _ref.IconProps;
 
   var _useState = (0, _react.useState)(),
-      _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
+      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
       anchorEl = _useState2[0],
       setAnchorEl = _useState2[1];
 
   var menuItems = model.menuItems; // <=1.3.3 didn't use a function
 
   var items = typeof menuItems === 'function' ? menuItems() : menuItems;
-  return items !== null && items !== void 0 && items.length ? /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, /*#__PURE__*/_react["default"].createElement(_core.IconButton, Object.assign({}, IconButtonProps, {
+  return items !== null && items !== void 0 && items.length ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.IconButton, (0, _extends2.default)({}, IconButtonProps, {
     "aria-label": "more",
     "aria-controls": "view-menu",
     "aria-haspopup": "true",
@@ -93,7 +101,7 @@ var ViewMenu = (0, _mobxReact.observer)(function (_ref) {
       setAnchorEl(event.currentTarget);
     },
     "data-testid": "view_menu_icon"
-  }), /*#__PURE__*/_react["default"].createElement(_Menu["default"], IconProps)), /*#__PURE__*/_react["default"].createElement(_Menu2["default"], {
+  }), /*#__PURE__*/_react.default.createElement(_Menu.default, IconProps)), /*#__PURE__*/_react.default.createElement(_Menu2.default, {
     anchorEl: anchorEl,
     open: Boolean(anchorEl),
     onMenuItemClick: function onMenuItemClick(_event, callback) {
@@ -107,28 +115,18 @@ var ViewMenu = (0, _mobxReact.observer)(function (_ref) {
   })) : null;
 });
 
-var _default = (0, _reactMeasure.withContentRect)('bounds')((0, _mobxReact.observer)(function (_ref2) {
+var _default = (0, _reactSizeme.withSize)()((0, _mobxReact.observer)(function (_ref2) {
   var view = _ref2.view,
       onClose = _ref2.onClose,
       style = _ref2.style,
       children = _ref2.children,
-      contentRect = _ref2.contentRect,
-      measureRef = _ref2.measureRef;
+      width = _ref2.size.width;
   var classes = useStyles();
   var theme = (0, _core.useTheme)();
   var padWidth = theme.spacing(1);
-  var width = 0;
-
-  if (contentRect.bounds) {
-    ;
-    width = contentRect.bounds.width;
-  }
-
   (0, _react.useEffect)(function () {
-    if (width) {
-      if ((0, _mobxStateTree.isAlive)(view)) {
-        view.setWidth(width - padWidth * 2);
-      }
+    if (width && (0, _mobxStateTree.isAlive)(view)) {
+      view.setWidth(width - padWidth * 2);
     }
   }, [padWidth, view, width]);
   var scrollRef = (0, _react.useRef)(null); // scroll the view into view when first mounted
@@ -136,27 +134,24 @@ var _default = (0, _reactMeasure.withContentRect)('bounds')((0, _mobxReact.obser
   // the empty array second param
 
   (0, _react.useEffect)(function () {
-    var _scrollRef$current;
+    var _scrollRef$current, _scrollRef$current$sc;
 
-    if (scrollRef !== null && scrollRef !== void 0 && (_scrollRef$current = scrollRef.current) !== null && _scrollRef$current !== void 0 && _scrollRef$current.scrollIntoView) {
-      scrollRef.current.scrollIntoView({
-        block: 'center'
-      });
-    }
+    (_scrollRef$current = scrollRef.current) === null || _scrollRef$current === void 0 ? void 0 : (_scrollRef$current$sc = _scrollRef$current.scrollIntoView) === null || _scrollRef$current$sc === void 0 ? void 0 : _scrollRef$current$sc.call(_scrollRef$current, {
+      block: 'center'
+    });
   }, []);
-  return /*#__PURE__*/_react["default"].createElement(_core.Paper, {
+  return /*#__PURE__*/_react.default.createElement(_core.Paper, {
     elevation: 12,
-    ref: measureRef,
     className: classes.viewContainer,
-    style: (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, style), {}, {
+    style: _objectSpread(_objectSpread({}, style), {}, {
       padding: "0px ".concat(padWidth, "px ").concat(padWidth, "px")
     })
-  }, /*#__PURE__*/_react["default"].createElement("div", {
+  }, /*#__PURE__*/_react.default.createElement("div", {
     ref: scrollRef,
     style: {
       display: 'flex'
     }
-  }, /*#__PURE__*/_react["default"].createElement(ViewMenu, {
+  }, /*#__PURE__*/_react.default.createElement(ViewMenu, {
     model: view,
     IconButtonProps: {
       classes: {
@@ -167,12 +162,12 @@ var _default = (0, _reactMeasure.withContentRect)('bounds')((0, _mobxReact.obser
     IconProps: {
       className: classes.icon
     }
-  }), /*#__PURE__*/_react["default"].createElement("div", {
+  }), /*#__PURE__*/_react.default.createElement("div", {
     className: classes.grow
-  }), /*#__PURE__*/_react["default"].createElement(_core.Tooltip, {
+  }), /*#__PURE__*/_react.default.createElement(_core.Tooltip, {
     title: "Rename view",
     arrow: true
-  }, /*#__PURE__*/_react["default"].createElement(_EditableTypography["default"], {
+  }, /*#__PURE__*/_react.default.createElement(_EditableTypography.default, {
     value: view.displayName || ( // @ts-ignore
     view.assemblyNames ? // @ts-ignore
     view.assemblyNames.join(',') : 'Untitled view'),
@@ -186,18 +181,18 @@ var _default = (0, _reactMeasure.withContentRect)('bounds')((0, _mobxReact.obser
       inputRoot: classes.inputRoot,
       inputFocused: classes.inputFocused
     }
-  })), /*#__PURE__*/_react["default"].createElement("div", {
+  })), /*#__PURE__*/_react.default.createElement("div", {
     className: classes.grow
-  }), /*#__PURE__*/_react["default"].createElement(_core.IconButton, {
+  }), /*#__PURE__*/_react.default.createElement(_core.IconButton, {
     "data-testid": "close_view",
     classes: {
       root: classes.iconRoot
     },
     edge: "end",
     onClick: onClose
-  }, /*#__PURE__*/_react["default"].createElement(_Close["default"], {
+  }, /*#__PURE__*/_react.default.createElement(_Close.default, {
     className: classes.icon
-  }))), /*#__PURE__*/_react["default"].createElement(_core.Paper, null, children));
+  }))), /*#__PURE__*/_react.default.createElement(_core.Paper, null, children));
 }));
 
-exports["default"] = _default;
+exports.default = _default;

package/ui/index.d.ts

@@ -1,6 +1,7 @@
 export * from './theme';
 export { LogoFull, Logomark } from './Logo';
 export { default as App } from './App';
+export { default as ErrorMessage } from './ErrorMessage';
 export { default as FileSelector } from './FileSelector';
 export { default as PrerenderedCanvas } from './PrerenderedCanvas';
 export { default as ResizeHandle } from './ResizeHandle';

package/ui/index.js

@@ -1,8 +1,8 @@
 "use strict";
 
-var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _typeof = require("@babel/runtime/helpers/typeof");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -11,6 +11,7 @@ var _exportNames = {
   LogoFull: true,
   Logomark: true,
   App: true,
+  ErrorMessage: true,
   FileSelector: true,
   PrerenderedCanvas: true,
   ResizeHandle: true,
@@ -24,31 +25,37 @@ var _exportNames = {
 Object.defineProperty(exports, "App", {
   enumerable: true,
   get: function get() {
-    return _App["default"];
+    return _App.default;
   }
 });
 Object.defineProperty(exports, "EditableTypography", {
   enumerable: true,
   get: function get() {
-    return _EditableTypography["default"];
+    return _EditableTypography.default;
+  }
+});
+Object.defineProperty(exports, "ErrorMessage", {
+  enumerable: true,
+  get: function get() {
+    return _ErrorMessage.default;
   }
 });
 Object.defineProperty(exports, "FactoryResetDialog", {
   enumerable: true,
   get: function get() {
-    return _FactoryResetDialog["default"];
+    return _FactoryResetDialog.default;
   }
 });
 Object.defineProperty(exports, "FatalErrorDialog", {
   enumerable: true,
   get: function get() {
-    return _FatalErrorDialog["default"];
+    return _FatalErrorDialog.default;
   }
 });
 Object.defineProperty(exports, "FileSelector", {
   enumerable: true,
   get: function get() {
-    return _FileSelector["default"];
+    return _FileSelector.default;
   }
 });
 Object.defineProperty(exports, "LogoFull", {
@@ -66,31 +73,31 @@ Object.defineProperty(exports, "Logomark", {
 Object.defineProperty(exports, "Menu", {
   enumerable: true,
   get: function get() {
-    return _Menu["default"];
+    return _Menu.default;
   }
 });
 Object.defineProperty(exports, "PrerenderedCanvas", {
   enumerable: true,
   get: function get() {
-    return _PrerenderedCanvas["default"];
+    return _PrerenderedCanvas.default;
   }
 });
 Object.defineProperty(exports, "ResizeHandle", {
   enumerable: true,
   get: function get() {
-    return _ResizeHandle["default"];
+    return _ResizeHandle.default;
   }
 });
 Object.defineProperty(exports, "SanitizedHTML", {
   enumerable: true,
   get: function get() {
-    return _SanitizedHTML["default"];
+    return _SanitizedHTML.default;
   }
 });
 Object.defineProperty(exports, "Tooltip", {
   enumerable: true,
   get: function get() {
-    return _Tooltip["default"];
+    return _Tooltip.default;
   }
 });
 
@@ -112,6 +119,8 @@ var _Logo = require("./Logo");
 
 var _App = _interopRequireDefault(require("./App"));
 
+var _ErrorMessage = _interopRequireDefault(require("./ErrorMessage"));
+
 var _FileSelector = _interopRequireDefault(require("./FileSelector"));
 
 var _PrerenderedCanvas = _interopRequireDefault(require("./PrerenderedCanvas"));
@@ -140,4 +149,8 @@ Object.keys(_Menu).forEach(function (key) {
   });
 });
 
-var _SanitizedHTML = _interopRequireDefault(require("./SanitizedHTML"));
+var _SanitizedHTML = _interopRequireDefault(require("./SanitizedHTML"));
+
+function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
+
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }

package/ui/theme.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -10,7 +10,7 @@ exports.createJBrowseDefaultProps = createJBrowseDefaultProps;
 exports.createJBrowseTheme = createJBrowseTheme;
 exports.jbrowseDefaultPalette = exports.jbrowseBaseTheme = void 0;
 
-var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _colors = require("@material-ui/core/colors");
 
@@ -20,6 +20,10 @@ var _createPalette = require("@material-ui/core/styles/createPalette");
 
 var _deepmerge = _interopRequireDefault(require("deepmerge"));
 
+function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
+
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+
 var midnight = '#0D233F';
 var grape = '#721E63';
 var forest = '#135560';
@@ -111,7 +115,7 @@ createJBrowseDefaultProps() {
 
 function createJBrowseDefaultOverrides() {
   var palette = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : {};
-  var generatedPalette = (0, _deepmerge["default"])(jbrowseDefaultPalette, palette);
+  var generatedPalette = (0, _deepmerge.default)(jbrowseDefaultPalette, palette);
   return {
     MuiIconButton: {
       colorSecondary: {
@@ -197,24 +201,24 @@ function createJBrowseTheme(theme) {
   }
 
   if ((_theme$palette = theme.palette) !== null && _theme$palette !== void 0 && _theme$palette.tertiary) {
-    theme = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme), {}, {
-      palette: (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme.palette), {}, {
+    theme = _objectSpread(_objectSpread({}, theme), {}, {
+      palette: _objectSpread(_objectSpread({}, theme.palette), {}, {
         tertiary: refTheme.palette.augmentColor(theme.palette.tertiary)
       })
     });
   }
 
   if ((_theme$palette2 = theme.palette) !== null && _theme$palette2 !== void 0 && _theme$palette2.quaternary) {
-    theme = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme), {}, {
-      palette: (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme.palette), {}, {
+    theme = _objectSpread(_objectSpread({}, theme), {}, {
+      palette: _objectSpread(_objectSpread({}, theme.palette), {}, {
         quaternary: refTheme.palette.augmentColor(theme.palette.quaternary)
       })
     });
   }
 
-  theme = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, theme), {}, {
-    props: (0, _deepmerge["default"])(createJBrowseDefaultProps(), theme.props || {}),
-    overrides: (0, _deepmerge["default"])(createJBrowseDefaultOverrides(theme.palette), theme.overrides || {})
+  theme = _objectSpread(_objectSpread({}, theme), {}, {
+    props: (0, _deepmerge.default)(createJBrowseDefaultProps(), theme.props || {}),
+    overrides: (0, _deepmerge.default)(createJBrowseDefaultOverrides(theme.palette), theme.overrides || {})
   });
-  return (0, _styles.createTheme)((0, _deepmerge["default"])(jbrowseBaseTheme, theme));
+  return (0, _styles.createTheme)((0, _deepmerge.default)(jbrowseBaseTheme, theme));
 }

package/util/Base1DViewModel.d.ts

@@ -36,18 +36,6 @@ declare const Base1DView: import("mobx-state-tree").IModelType<{
     readonly maxOffset: number;
     readonly minOffset: number;
     readonly totalBp: number;
-    /**
-     * calculates the Px at which coord is found.
-     *
-     * @param refName - string, refName of region
-     * @param coord - number, bp to be translated to Px
-     * @param regionNumber - number, index of displayedRegion in displayedRegions array
-     */
-    bpToPx({ refName, coord, regionNumber, }: {
-        refName: string;
-        coord: number;
-        regionNumber?: number | undefined;
-    }): number | undefined;
     pxToBp(px: number): {
         oob: boolean;
         coord: number;
@@ -72,6 +60,18 @@ declare const Base1DView: import("mobx-state-tree").IModelType<{
     readonly dynamicBlocks: import("./blockTypes").BlockSet;
     readonly staticBlocks: import("./blockTypes").BlockSet;
     readonly currBp: number;
+    /**
+     * calculates the Px at which coord is found.
+     *
+     * @param refName - string, refName of region
+     * @param coord - number, bp to be translated to Px
+     * @param regionNumber - number, index of displayedRegion in displayedRegions array
+     */
+    bpToPx({ refName, coord, regionNumber, }: {
+        refName: string;
+        coord: number;
+        regionNumber?: number | undefined;
+    }): number | undefined;
 } & {
     setFeatures(features: Feature[]): void;
     zoomToDisplayedRegions(leftPx: BpOffset | undefined, rightPx: BpOffset | undefined): void;
@@ -87,6 +87,8 @@ declare const Base1DView: import("mobx-state-tree").IModelType<{
     zoomOut(): void;
     zoomIn(): void;
     zoomTo(newBpPerPx: number, offset?: number): void;
+    scrollTo(offsetPx: number): number;
+    centerAt(bp: number, refName: string, regionIndex: number): void;
     scroll(distance: number): number;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export declare type Base1DViewStateModel = typeof Base1DView;