@jbrowse/core 1.5.7 → 1.6.1

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Files changed (155) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +91 -78
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +65 -57
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  4. package/BaseFeatureWidget/index.js +1 -1
  5. package/BaseFeatureWidget/index.test.js +4 -4
  6. package/BaseFeatureWidget/util.js +13 -9
  7. package/CorePlugin.js +32 -20
  8. package/Plugin.js +13 -11
  9. package/PluginLoader.js +38 -33
  10. package/PluginManager.d.ts +8 -5
  11. package/PluginManager.js +142 -53
  12. package/ReExports/index.js +4 -4
  13. package/ReExports/list.js +2 -2
  14. package/ReExports/material-ui-colors.js +20 -20
  15. package/ReExports/modules.d.ts +7 -5
  16. package/ReExports/modules.js +51 -47
  17. package/TextSearch/BaseResults.js +34 -24
  18. package/TextSearch/BaseResults.test.js +7 -3
  19. package/TextSearch/TextSearchManager.js +17 -15
  20. package/assemblyManager/assembly.js +39 -34
  21. package/assemblyManager/assemblyConfigSchema.js +2 -2
  22. package/assemblyManager/assemblyManager.js +20 -16
  23. package/assemblyManager/index.js +3 -3
  24. package/babel.config.d.ts +15 -0
  25. package/babel.config.js +19 -0
  26. package/configuration/configurationSchema.js +19 -17
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/index.d.ts +1 -0
  30. package/configuration/util.js +5 -5
  31. package/data_adapters/BaseAdapter.d.ts +15 -3
  32. package/data_adapters/BaseAdapter.js +216 -62
  33. package/data_adapters/BaseAdapter.test.js +30 -24
  34. package/data_adapters/CytobandAdapter.d.ts +1 -1
  35. package/data_adapters/CytobandAdapter.js +25 -19
  36. package/data_adapters/dataAdapterCache.js +9 -9
  37. package/package.json +4 -5
  38. package/pluggableElementTypes/AdapterType.js +31 -22
  39. package/pluggableElementTypes/ConnectionType.js +28 -18
  40. package/pluggableElementTypes/DisplayType.js +27 -17
  41. package/pluggableElementTypes/InternetAccountType.js +24 -14
  42. package/pluggableElementTypes/PluggableElementBase.js +10 -8
  43. package/pluggableElementTypes/RpcMethodType.d.ts +1 -1
  44. package/pluggableElementTypes/RpcMethodType.js +141 -118
  45. package/pluggableElementTypes/RpcMethodType.test.js +23 -17
  46. package/pluggableElementTypes/TextSearchAdapterType.js +25 -15
  47. package/pluggableElementTypes/TrackType.js +25 -15
  48. package/pluggableElementTypes/ViewType.js +25 -15
  49. package/pluggableElementTypes/WidgetType.js +27 -17
  50. package/pluggableElementTypes/index.js +11 -11
  51. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  52. package/pluggableElementTypes/models/BaseDisplayModel.js +8 -5
  53. package/pluggableElementTypes/models/BaseTrackModel.js +11 -8
  54. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  55. package/pluggableElementTypes/models/InternetAccountModel.d.ts +1 -1
  56. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  57. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  58. package/pluggableElementTypes/models/baseTrackConfig.js +7 -4
  59. package/pluggableElementTypes/models/index.js +4 -4
  60. package/pluggableElementTypes/renderers/BoxRendererType.js +49 -39
  61. package/pluggableElementTypes/renderers/CircularChordRendererType.js +18 -12
  62. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +35 -27
  63. package/pluggableElementTypes/renderers/FeatureRendererType.js +46 -36
  64. package/pluggableElementTypes/renderers/RendererType.js +31 -21
  65. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +12 -8
  66. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +1 -1
  67. package/pluggableElementTypes/renderers/ServerSideRendererType.js +45 -33
  68. package/pluggableElementTypes/renderers/index.js +8 -8
  69. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +10 -8
  70. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  71. package/rpc/BaseRpcDriver.js +43 -38
  72. package/rpc/BaseRpcDriver.test.js +63 -49
  73. package/rpc/MainThreadRpcDriver.js +32 -22
  74. package/rpc/RpcManager.js +19 -17
  75. package/rpc/WebWorkerRpcDriver.js +38 -28
  76. package/rpc/configSchema.js +2 -2
  77. package/rpc/coreRpcMethods.d.ts +16 -0
  78. package/rpc/coreRpcMethods.js +248 -121
  79. package/rpc/remoteAbortSignals.js +3 -3
  80. package/ui/AboutDialog.js +21 -17
  81. package/ui/App.js +42 -38
  82. package/ui/AssemblySelector.d.ts +1 -1
  83. package/ui/AssemblySelector.js +6 -6
  84. package/ui/Drawer.js +7 -7
  85. package/ui/DrawerWidget.d.ts +1 -1
  86. package/ui/DrawerWidget.js +37 -33
  87. package/ui/DropDownMenu.js +21 -9
  88. package/ui/EditableTypography.js +30 -19
  89. package/ui/ErrorMessage.js +5 -5
  90. package/ui/FactoryResetDialog.js +8 -8
  91. package/ui/FatalErrorDialog.js +29 -12
  92. package/ui/FatalErrorDialog.test.js +11 -11
  93. package/ui/FileSelector/FileSelector.js +42 -32
  94. package/ui/FileSelector/LocalFileChooser.js +9 -9
  95. package/ui/FileSelector/UrlChooser.js +4 -4
  96. package/ui/FileSelector/index.js +4 -4
  97. package/ui/Icons.js +9 -9
  98. package/ui/Logo.js +19 -19
  99. package/ui/Menu.js +46 -35
  100. package/ui/NewSessionCards.js +29 -19
  101. package/ui/PrerenderedCanvas.js +27 -10
  102. package/ui/ResizeHandle.js +17 -10
  103. package/ui/SanitizedHTML.js +5 -5
  104. package/ui/SanitizedHTML.test.js +4 -4
  105. package/ui/Snackbar.js +16 -12
  106. package/ui/SnackbarModel.js +1 -1
  107. package/ui/Tooltip.js +11 -7
  108. package/ui/ViewContainer.d.ts +2 -5
  109. package/ui/ViewContainer.js +44 -49
  110. package/ui/index.d.ts +1 -0
  111. package/ui/index.js +26 -13
  112. package/ui/theme.js +15 -11
  113. package/util/Base1DViewModel.d.ts +14 -12
  114. package/util/Base1DViewModel.js +51 -55
  115. package/util/Base1DViewModel.test.js +5 -5
  116. package/util/QuickLRU.js +31 -27
  117. package/util/aborting.js +26 -16
  118. package/util/analytics.d.ts +1 -0
  119. package/util/analytics.js +15 -7
  120. package/util/blockTypes.js +48 -36
  121. package/util/calculateDynamicBlocks.js +4 -4
  122. package/util/calculateDynamicBlocks.test.js +14 -10
  123. package/util/calculateStaticBlocks.js +1 -1
  124. package/util/calculateStaticBlocks.test.js +15 -15
  125. package/util/compositeMap.js +31 -27
  126. package/util/idMaker.js +4 -4
  127. package/util/index.d.ts +23 -1
  128. package/util/index.js +135 -41
  129. package/util/index.test.js +11 -7
  130. package/util/io/RemoteFileWithRangeCache.js +41 -29
  131. package/util/io/index.js +6 -6
  132. package/util/jexl.js +5 -5
  133. package/util/jexlStrings.js +2 -2
  134. package/util/jexlStrings.test.js +2 -2
  135. package/util/layouts/GranularRectLayout.js +33 -27
  136. package/util/layouts/GranularRectLayout.test.js +10 -10
  137. package/util/layouts/MultiLayout.js +19 -13
  138. package/util/layouts/PrecomputedLayout.js +16 -14
  139. package/util/layouts/PrecomputedMultiLayout.js +23 -17
  140. package/util/layouts/SceneGraph.js +18 -12
  141. package/util/layouts/index.js +6 -6
  142. package/util/offscreenCanvasPonyfill.js +31 -29
  143. package/util/offscreenCanvasUtils.js +6 -6
  144. package/util/range.test.js +20 -20
  145. package/util/rxjs.js +2 -2
  146. package/util/simpleFeature.js +23 -18
  147. package/util/simpleFeature.test.js +3 -3
  148. package/util/stats.d.ts +1 -1
  149. package/util/stats.js +11 -7
  150. package/util/stats.test.js +16 -16
  151. package/util/tracks.js +1 -3
  152. package/util/types/index.d.ts +1 -1
  153. package/util/types/index.js +36 -31
  154. package/util/types/mst.js +19 -15
  155. package/util/when.js +6 -6
@@ -1,37 +1,47 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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+
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+
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+ var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
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+
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  var _mstReflection = require("../util/mst-reflection");
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+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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+
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+ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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  var TrackType = /*#__PURE__*/function (_PluggableElementBase) {
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- (0, _inherits2["default"])(TrackType, _PluggableElementBase);
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+ (0, _inherits2.default)(TrackType, _PluggableElementBase);
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- var _super = (0, _createSuper2["default"])(TrackType);
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+ var _super = _createSuper(TrackType);
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  function TrackType(stuff) {
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- (0, _classCallCheck2["default"])(this, TrackType);
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+ (0, _classCallCheck2.default)(this, TrackType);
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  _this = _super.call(this, stuff);
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- _this.stateModel = void 0;
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- _this.configSchema = void 0;
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- _this.displayTypes = [];
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "stateModel", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "configSchema", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "displayTypes", []);
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@@ -51,13 +61,13 @@ var TrackType = /*#__PURE__*/function (_PluggableElementBase) {
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- (0, _createClass2["default"])(TrackType, [{
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+ (0, _createClass2.default)(TrackType, [{
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  return TrackType;
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- }(_PluggableElementBase2["default"]);
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+ exports.default = TrackType;
@@ -1,35 +1,45 @@
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  "use strict";
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- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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+ exports.default = void 0;
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- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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+ var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
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- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
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+
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+ var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
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+ var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
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+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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+ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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- (0, _inherits2["default"])(ViewType, _PluggableElementBase);
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+ (0, _inherits2.default)(ViewType, _PluggableElementBase);
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+ (0, _classCallCheck2.default)(this, ViewType);
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- _this.ReactComponent = void 0;
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- _this.stateModel = void 0;
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- _this.displayTypes = [];
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "ReactComponent", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "stateModel", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "displayTypes", []);
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@@ -44,13 +54,13 @@ var ViewType = /*#__PURE__*/function (_PluggableElementBase) {
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  return _this;
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- }(_PluggableElementBase2["default"]);
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+ exports.default = ViewType;
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+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
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+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
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+ var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
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+ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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- _this.heading = void 0;
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- _this.configSchema = void 0;
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- _this.ReactComponent = void 0;
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "heading", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "configSchema", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "HeadingComponent", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "ReactComponent", void 0);
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@@ -50,7 +60,7 @@ var WidgetType = /*#__PURE__*/function (_PluggableElementBase) {
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- return (0, _createClass2["default"])(WidgetType);
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- }(_PluggableElementBase2["default"]);
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+ return (0, _createClass2.default)(WidgetType);
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+ }(_PluggableElementBase2.default);
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66
+ exports.default = WidgetType;
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -20,61 +20,61 @@ var _exportNames = {
20
20
  Object.defineProperty(exports, "AdapterType", {
21
21
  enumerable: true,
22
22
  get: function get() {
23
- return _AdapterType["default"];
23
+ return _AdapterType.default;
24
24
  }
25
25
  });
26
26
  Object.defineProperty(exports, "ConnectionType", {
27
27
  enumerable: true,
28
28
  get: function get() {
29
- return _ConnectionType["default"];
29
+ return _ConnectionType.default;
30
30
  }
31
31
  });
32
32
  Object.defineProperty(exports, "DisplayType", {
33
33
  enumerable: true,
34
34
  get: function get() {
35
- return _DisplayType["default"];
35
+ return _DisplayType.default;
36
36
  }
37
37
  });
38
38
  Object.defineProperty(exports, "InternetAccountType", {
39
39
  enumerable: true,
40
40
  get: function get() {
41
- return _InternetAccountType["default"];
41
+ return _InternetAccountType.default;
42
42
  }
43
43
  });
44
44
  Object.defineProperty(exports, "RendererType", {
45
45
  enumerable: true,
46
46
  get: function get() {
47
- return _RendererType["default"];
47
+ return _RendererType.default;
48
48
  }
49
49
  });
50
50
  Object.defineProperty(exports, "RpcMethodType", {
51
51
  enumerable: true,
52
52
  get: function get() {
53
- return _RpcMethodType["default"];
53
+ return _RpcMethodType.default;
54
54
  }
55
55
  });
56
56
  Object.defineProperty(exports, "TextSearchAdapterType", {
57
57
  enumerable: true,
58
58
  get: function get() {
59
- return _TextSearchAdapterType["default"];
59
+ return _TextSearchAdapterType.default;
60
60
  }
61
61
  });
62
62
  Object.defineProperty(exports, "TrackType", {
63
63
  enumerable: true,
64
64
  get: function get() {
65
- return _TrackType["default"];
65
+ return _TrackType.default;
66
66
  }
67
67
  });
68
68
  Object.defineProperty(exports, "ViewType", {
69
69
  enumerable: true,
70
70
  get: function get() {
71
- return _ViewType["default"];
71
+ return _ViewType.default;
72
72
  }
73
73
  });
74
74
  Object.defineProperty(exports, "WidgetType", {
75
75
  enumerable: true,
76
76
  get: function get() {
77
- return _WidgetType["default"];
77
+ return _WidgetType.default;
78
78
  }
79
79
  });
80
80
 
@@ -1,13 +1,13 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
10
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
11
11
 
12
12
  var _mobxStateTree = require("mobx-state-tree");
13
13
 
@@ -29,7 +29,7 @@ var _default = function _default(pluginManager) {
29
29
  addTrackConfs: function addTrackConfs(trackConfs) {
30
30
  var _self$tracks;
31
31
 
32
- var length = (_self$tracks = self.tracks).push.apply(_self$tracks, (0, _toConsumableArray2["default"])(trackConfs));
32
+ var length = (_self$tracks = self.tracks).push.apply(_self$tracks, (0, _toConsumableArray2.default)(trackConfs));
33
33
 
34
34
  return self.tracks.slice(length - 1 - trackConfs.length, length - 1);
35
35
  },
@@ -42,4 +42,4 @@ var _default = function _default(pluginManager) {
42
42
  });
43
43
  };
44
44
 
45
- exports["default"] = _default;
45
+ exports.default = _default;
@@ -1,13 +1,13 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.BaseDisplay = void 0;
9
9
 
10
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
10
+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
11
11
 
12
12
  var _mobxStateTree = require("mobx-state-tree");
13
13
 
@@ -17,12 +17,15 @@ var _tracks = require("../../util/tracks");
17
17
 
18
18
  var _mst = require("../../util/types/mst");
19
19
 
20
- /* eslint-disable @typescript-eslint/no-explicit-any */
20
+ function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
21
+
22
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
23
+
21
24
  var BaseDisplay = _mobxStateTree.types.model('BaseDisplay', {
22
25
  id: _mst.ElementId,
23
26
  type: _mobxStateTree.types.string,
24
27
  rpcDriverName: _mobxStateTree.types.maybe(_mobxStateTree.types.string)
25
- })["volatile"](function () {
28
+ }).volatile(function () {
26
29
  return {
27
30
  rendererTypeName: '',
28
31
  error: undefined
@@ -64,7 +67,7 @@ var BaseDisplay = _mobxStateTree.types.model('BaseDisplay', {
64
67
  * is rendered in this display
65
68
  */
66
69
  renderProps: function renderProps() {
67
- return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, (0, _tracks.getParentRenderProps)(self)), {}, {
70
+ return _objectSpread(_objectSpread({}, (0, _tracks.getParentRenderProps)(self)), {}, {
68
71
  rpcDriverName: self.rpcDriverName,
69
72
  displayModel: self
70
73
  });
@@ -1,15 +1,15 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.createBaseTrackModel = createBaseTrackModel;
9
9
 
10
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
10
+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
11
11
 
12
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
12
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
13
13
 
14
14
  var _mobx = require("mobx");
15
15
 
@@ -25,7 +25,10 @@ var _types = require("../../util/types");
25
25
 
26
26
  var _mst = require("../../util/types/mst");
27
27
 
28
- /* eslint-disable @typescript-eslint/no-explicit-any */
28
+ function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
29
+
30
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
31
+
29
32
  // these MST models only exist for tracks that are *shown*.
30
33
  // they should contain only UI state for the track, and have
31
34
  // a reference to a track configuration (stored under
@@ -76,7 +79,7 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
76
79
  get viewMenuActions() {
77
80
  var menuItems = [];
78
81
  self.displays.forEach(function (display) {
79
- menuItems.push.apply(menuItems, (0, _toConsumableArray2["default"])(display.viewMenuActions));
82
+ menuItems.push.apply(menuItems, (0, _toConsumableArray2.default)(display.viewMenuActions));
80
83
  });
81
84
  return menuItems;
82
85
  },
@@ -119,7 +122,7 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
119
122
  throw new Error("unknown display type ".concat(configuration.type));
120
123
  }
121
124
 
122
- var display = displayType.stateModel.create((0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, initialSnapshot), {}, {
125
+ var display = displayType.stateModel.create(_objectSpread(_objectSpread({}, initialSnapshot), {}, {
123
126
  type: configuration.type,
124
127
  configuration: configuration
125
128
  }));
@@ -157,7 +160,7 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
157
160
  throw new Error("unknown display type ".concat(configuration.type));
158
161
  }
159
162
 
160
- self.displays.splice(displayIdx, 1, (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, initialSnapshot), {}, {
163
+ self.displays.splice(displayIdx, 1, _objectSpread(_objectSpread({}, initialSnapshot), {}, {
161
164
  type: configuration.type,
162
165
  configuration: configuration
163
166
  }));
@@ -168,7 +171,7 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
168
171
  trackMenuItems: function trackMenuItems() {
169
172
  var menuItems = [];
170
173
  self.displays.forEach(function (display) {
171
- menuItems.push.apply(menuItems, (0, _toConsumableArray2["default"])(display.trackMenuItems()));
174
+ menuItems.push.apply(menuItems, (0, _toConsumableArray2.default)(display.trackMenuItems()));
172
175
  });
173
176
  var displayChoices = [];
174
177
  var view = (0, _util.getContainingView)(self);
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  var _mobxStateTree = require("mobx-state-tree");
9
9
 
@@ -12,7 +12,7 @@ var _mst = require("../../util/types/mst");
12
12
  var BaseViewModel = _mobxStateTree.types.model('BaseView', {
13
13
  id: _mst.ElementId,
14
14
  displayName: _mobxStateTree.types.maybe(_mobxStateTree.types.string)
15
- })["volatile"](function
15
+ }).volatile(function
16
16
  /* self */
17
17
  () {
18
18
  return {
@@ -39,4 +39,4 @@ var BaseViewModel = _mobxStateTree.types.model('BaseView', {
39
39
 
40
40
  var _default = BaseViewModel; // eslint-disable-next-line @typescript-eslint/no-empty-interface,@typescript-eslint/interface-name-prefix
41
41
 
42
- exports["default"] = _default;
42
+ exports.default = _default;
@@ -1,7 +1,7 @@
1
1
  import React from 'react';
2
2
  import { Instance } from 'mobx-state-tree';
3
3
  import { RemoteFileWithRangeCache } from '../../util/io';
4
- import { FileLocation, UriLocation, AnyReactComponentType } from '@jbrowse/core/util/types';
4
+ import { FileLocation, UriLocation, AnyReactComponentType } from '../../util/types';
5
5
  export declare const InternetAccount: import("mobx-state-tree").IModelType<{
6
6
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
7
7
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -1,15 +1,15 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.InternetAccount = void 0;
9
9
 
10
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
10
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
13
13
 
14
14
  var _mobxStateTree = require("mobx-state-tree");
15
15
 
@@ -62,8 +62,8 @@ var InternetAccount = _mobxStateTree.types.model('InternetAccount', {
62
62
  return new _io.RemoteFileWithRangeCache(String(location.uri));
63
63
  },
64
64
  getPreAuthorizationInformation: function getPreAuthorizationInformation(location) {
65
- return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
66
- return _index["default"].wrap(function _callee$(_context) {
65
+ return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
66
+ return _regenerator.default.wrap(function _callee$(_context) {
67
67
  while (1) {
68
68
  switch (_context.prev = _context.next) {
69
69
  case 0:
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  var _configuration = require("../../configuration");
9
9
 
@@ -23,4 +23,4 @@ var _default = (0, _configuration.ConfigurationSchema)('BaseConnection', {
23
23
  explicitIdentifier: 'connectionId'
24
24
  });
25
25
 
26
- exports["default"] = _default;
26
+ exports.default = _default;
@@ -1,19 +1,22 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
8
  exports.createBaseTrackConfig = createBaseTrackConfig;
9
9
 
10
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
10
+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
11
11
 
12
12
  var _mobxStateTree = require("mobx-state-tree");
13
13
 
14
14
  var _configuration = require("../../configuration");
15
15
 
16
- /* eslint-disable @typescript-eslint/no-explicit-any */
16
+ function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
17
+
18
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
19
+
17
20
  function createBaseTrackConfig(pluginManager) {
18
21
  return (0, _configuration.ConfigurationSchema)('BaseTrack', {
19
22
  name: {
@@ -93,7 +96,7 @@ function createBaseTrackConfig(pluginManager) {
93
96
  });
94
97
  }
95
98
 
96
- return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, snap), {}, {
99
+ return _objectSpread(_objectSpread({}, snap), {}, {
97
100
  displays: displays
98
101
  });
99
102
  },
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "BaseConnectionModelFactory", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _BaseConnectionModelFactory["default"];
11
+ return _BaseConnectionModelFactory.default;
12
12
  }
13
13
  });
14
14
  Object.defineProperty(exports, "BaseDisplay", {
@@ -26,7 +26,7 @@ Object.defineProperty(exports, "BaseInternetAccountConfig", {
26
26
  Object.defineProperty(exports, "BaseViewModel", {
27
27
  enumerable: true,
28
28
  get: function get() {
29
- return _BaseViewModel["default"];
29
+ return _BaseViewModel.default;
30
30
  }
31
31
  });
32
32
  Object.defineProperty(exports, "InternetAccount", {
@@ -38,7 +38,7 @@ Object.defineProperty(exports, "InternetAccount", {
38
38
  Object.defineProperty(exports, "baseConnectionConfig", {
39
39
  enumerable: true,
40
40
  get: function get() {
41
- return _baseConnectionConfig["default"];
41
+ return _baseConnectionConfig.default;
42
42
  }
43
43
  });
44
44
  Object.defineProperty(exports, "createBaseTrackConfig", {