@jbrowse/core 1.5.7 → 1.6.1

package/util/jexl.js

@@ -1,18 +1,18 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = _default;
+exports.default = _default;
 
 var _jexl = _interopRequireDefault(require("jexl"));
 
 function
   /* config?: any*/
 _default() {
-  var j = new _jexl["default"].Jexl(); // someday will make sure all of configs callbacks are added in, including
+  var j = new _jexl.default.Jexl(); // someday will make sure all of configs callbacks are added in, including
   // ones passed in
   // below are core functions
 
@@ -49,8 +49,8 @@ _default() {
   j.addFunction('parseInt', Number.parseInt);
   j.addFunction('parseFloat', Number.parseFloat); // string
 
-  j.addFunction('split', function (str, _char) {
-    return str.split(_char);
+  j.addFunction('split', function (str, char) {
+    return str.split(char);
   });
   j.addFunction('charAt', function (str, index) {
     return str.charAt(index);

package/util/jexlStrings.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -32,7 +32,7 @@ jexl) {
     }
 
     var code = str.split('jexl:')[1];
-    var compiled = jexl ? jexl.compile("".concat(code)) : (0, _jexl["default"])().compile("".concat(code));
+    var compiled = jexl ? jexl.compile("".concat(code)) : (0, _jexl.default)().compile("".concat(code));
     compilationCache[cacheKey] = compiled;
   }
 

package/util/jexlStrings.test.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 var _jexlStrings = require("./jexlStrings");
 
@@ -29,7 +29,7 @@ describe('function string parsing', function () {
     expect(result).toEqual(35);
   });
   it('can use the loaded core helper functions to access feature info', function () {
-    var feature = new _simpleFeature["default"]({
+    var feature = new _simpleFeature.default({
       uniqueId: 'jexlFeature',
       score: 10,
       start: 1,

package/util/layouts/GranularRectLayout.js

@@ -1,22 +1,28 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _index = require("../index");
 
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
+
+function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
+
+function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
+
 /**
  * Rectangle-layout manager that lays out rectangles using bitmaps at
  * resolution that, for efficiency, may be somewhat lower than that of
@@ -35,11 +41,11 @@ function segmentsIntersect(x1, x2, y1, y2) {
 // a single row in the layout
 var LayoutRow = /*#__PURE__*/function () {
   function LayoutRow() {
-    (0, _classCallCheck2["default"])(this, LayoutRow);
-    this.padding = void 0;
-    this.allFilled = void 0;
-    this.widthLimit = void 0;
-    this.rowState = void 0;
+    (0, _classCallCheck2.default)(this, LayoutRow);
+    (0, _defineProperty2.default)(this, "padding", void 0);
+    (0, _defineProperty2.default)(this, "allFilled", void 0);
+    (0, _defineProperty2.default)(this, "widthLimit", void 0);
+    (0, _defineProperty2.default)(this, "rowState", void 0);
     this.padding = 1;
     this.widthLimit = 1000000; // this.rowState.offset is the offset of the bits array relative to the genomic coordinates
     //      (modified by pitchX, but we don't know that in this class)
@@ -53,7 +59,7 @@ var LayoutRow = /*#__PURE__*/function () {
   // }
 
 
-  (0, _createClass2["default"])(LayoutRow, [{
+  (0, _createClass2.default)(LayoutRow, [{
     key: "setAllFilled",
     value: function setAllFilled(data) {
       this.allFilled = data;
@@ -301,16 +307,16 @@ var GranularRectLayout = /*#__PURE__*/function () {
         _ref$displayMode = _ref.displayMode,
         displayMode = _ref$displayMode === void 0 ? 'normal' : _ref$displayMode;
 
-    (0, _classCallCheck2["default"])(this, GranularRectLayout);
-    this.pitchX = void 0;
-    this.pitchY = void 0;
-    this.hardRowLimit = void 0;
-    this.bitmap = void 0;
-    this.rectangles = void 0;
-    this.maxHeightReached = void 0;
-    this.maxHeight = void 0;
-    this.displayMode = void 0;
-    this.pTotalHeight = void 0;
+    (0, _classCallCheck2.default)(this, GranularRectLayout);
+    (0, _defineProperty2.default)(this, "pitchX", void 0);
+    (0, _defineProperty2.default)(this, "pitchY", void 0);
+    (0, _defineProperty2.default)(this, "hardRowLimit", void 0);
+    (0, _defineProperty2.default)(this, "bitmap", void 0);
+    (0, _defineProperty2.default)(this, "rectangles", void 0);
+    (0, _defineProperty2.default)(this, "maxHeightReached", void 0);
+    (0, _defineProperty2.default)(this, "maxHeight", void 0);
+    (0, _defineProperty2.default)(this, "displayMode", void 0);
+    (0, _defineProperty2.default)(this, "pTotalHeight", void 0);
     this.pitchX = pitchX;
     this.pitchY = pitchY;
     this.hardRowLimit = hardRowLimit;
@@ -333,7 +339,7 @@ var GranularRectLayout = /*#__PURE__*/function () {
    */
 
 
-  (0, _createClass2["default"])(GranularRectLayout, [{
+  (0, _createClass2.default)(GranularRectLayout, [{
     key: "addRect",
     value: function addRect(id, left, right, height, data) {
       // if we have already laid it out, return its layout
@@ -518,7 +524,7 @@ var GranularRectLayout = /*#__PURE__*/function () {
       var _this = this;
 
       return new Map(Array.from(this.rectangles.entries()).map(function (_ref2) {
-        var _ref3 = (0, _slicedToArray2["default"])(_ref2, 2),
+        var _ref3 = (0, _slicedToArray2.default)(_ref2, 2),
             id = _ref3[0],
             rect = _ref3[1];
 
@@ -537,12 +543,12 @@ var GranularRectLayout = /*#__PURE__*/function () {
       var regionRectangles = {};
       var maxHeightReached = false;
 
-      var _iterator = (0, _createForOfIteratorHelper2["default"])(this.rectangles.entries()),
+      var _iterator = _createForOfIteratorHelper(this.rectangles.entries()),
           _step;
 
       try {
         for (_iterator.s(); !(_step = _iterator.n()).done;) {
-          var _step$value = (0, _slicedToArray2["default"])(_step.value, 2),
+          var _step$value = (0, _slicedToArray2.default)(_step.value, 2),
               id = _step$value[0],
               rect = _step$value[1];
 
@@ -592,4 +598,4 @@ var GranularRectLayout = /*#__PURE__*/function () {
   return GranularRectLayout;
 }();
 
-exports["default"] = GranularRectLayout;
+exports.default = GranularRectLayout;

package/util/layouts/GranularRectLayout.test.js

@@ -1,26 +1,26 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
-var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
+var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
 
 var _GranularRectLayout = _interopRequireDefault(require("./GranularRectLayout"));
 
 describe('GranularRectLayout', function () {
   it('lays out non-overlapping features end to end', function () {
-    var l = new _GranularRectLayout["default"]({
+    var l = new _GranularRectLayout.default({
       pitchX: 10,
       pitchY: 4
     });
     var testRects = [['1,0', 4133, 5923, 16], ['1,1', 11299, 12389, 16], ['1,2', 21050, 22778, 16], ['1,3', 41125, 47459, 16], ['1,4', 47926, 49272, 16], ['1,5', 50240, 52495, 16], ['1,6', 53329, 56283, 16], ['1,7', 59309, 79441, 16], ['1,8', 80359, 83196, 16], ['1,9', 92147, 94188, 16], ['1,10', 96241, 103626, 16], ['1,11', 104396, 108110, 16], ['1,12', 111878, 125251, 16], ['1,13', 125747, 128085, 16], ['1,14', 131492, 132641, 16], ['1,15', 133857, 134931, 16], ['1,16', 137023, 138220, 16], ['1,17', 140703, 145668, 16], ['1,18', 146045, 147059, 16], ['1,19', 162296, 165395, 16], ['1,20', 168531, 170795, 16], ['1,21', 174812, 180475, 16], ['1,22', 184302, 188826, 16], ['1,23', 189609, 191141, 16], ['1,24', 199799, 201389, 16], ['1,25', 203436, 211345, 16], ['1,26', 212100, 212379, 16], ['1,27', 213418, 214627, 16], ['1,28', 215115, 219344, 16], ['1,29', 220067, 222525, 16], ['1,30', 223308, 228141, 16], ['1,31', 234473, 236768, 16], ['1,32', 239691, 245015, 16]];
 
     for (var i = 0; i < testRects.length; i += 1) {
-      var top = l.addRect.apply(l, (0, _toConsumableArray2["default"])(testRects[i]));
+      var top = l.addRect.apply(l, (0, _toConsumableArray2.default)(testRects[i]));
       expect(top).toEqual(0);
     }
   });
   it('stacks up overlapping features', function () {
-    var l = new _GranularRectLayout["default"]({
+    var l = new _GranularRectLayout.default({
       pitchX: 10,
       pitchY: 4
     });
@@ -31,12 +31,12 @@ describe('GranularRectLayout', function () {
     }
 
     for (var _i = 0; _i < testRects.length; _i += 1) {
-      var top = l.addRect.apply(l, (0, _toConsumableArray2["default"])(testRects[_i]));
+      var top = l.addRect.apply(l, (0, _toConsumableArray2.default)(testRects[_i]));
       expect(top).toEqual(_i % 2 * 4);
     }
   });
   it('discards regions', function () {
-    var l = new _GranularRectLayout["default"]({
+    var l = new _GranularRectLayout.default({
       pitchX: 10,
       pitchY: 4
     });
@@ -59,7 +59,7 @@ describe('GranularRectLayout', function () {
   }); // see issue #486
 
   it('tests that adding +/- pitchX fixes resolution causing errors', function () {
-    var l = new _GranularRectLayout["default"]({
+    var l = new _GranularRectLayout.default({
       pitchX: 91.21851599727707,
       pitchY: 3
     });
@@ -71,7 +71,7 @@ describe('GranularRectLayout', function () {
   });
   it('tests reinitializing layout due to throwing away old one', function () {
     var spy = jest.spyOn(console, 'warn').mockImplementation(function () {});
-    var l = new _GranularRectLayout["default"]({
+    var l = new _GranularRectLayout.default({
       pitchX: 1,
       pitchY: 1,
       maxHeight: 600
@@ -84,7 +84,7 @@ describe('GranularRectLayout', function () {
     spy.mockRestore();
   });
   it('tests adding a gigantic feature that fills entire row with another smaller added on top', function () {
-    var l = new _GranularRectLayout["default"]({
+    var l = new _GranularRectLayout.default({
       pitchX: 100,
       pitchY: 1,
       maxHeight: 600

package/util/layouts/MultiLayout.js

@@ -1,19 +1,25 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
+
+function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
+
+function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
 
 /* eslint-disable @typescript-eslint/no-explicit-any */
 var MultiLayout = /*#__PURE__*/function () {
@@ -24,15 +30,15 @@ var MultiLayout = /*#__PURE__*/function () {
    */
   function MultiLayout(SubLayoutClass) {
     var layoutArgs = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
-    (0, _classCallCheck2["default"])(this, MultiLayout);
+    (0, _classCallCheck2.default)(this, MultiLayout);
     this.SubLayoutClass = SubLayoutClass;
-    this.subLayouts = new Map();
-    this.subLayoutConstructorArgs = {};
+    (0, _defineProperty2.default)(this, "subLayouts", new Map());
+    (0, _defineProperty2.default)(this, "subLayoutConstructorArgs", {});
     this.subLayouts = new Map();
     this.subLayoutConstructorArgs = layoutArgs;
   }
 
-  (0, _createClass2["default"])(MultiLayout, [{
+  (0, _createClass2.default)(MultiLayout, [{
     key: "getSublayout",
     value: function getSublayout(layoutName) {
       var subLayout = this.subLayouts.get(layoutName);
@@ -62,12 +68,12 @@ var MultiLayout = /*#__PURE__*/function () {
     value: function toJSON() {
       var data = {};
 
-      var _iterator = (0, _createForOfIteratorHelper2["default"])(this.subLayouts.entries()),
+      var _iterator = _createForOfIteratorHelper(this.subLayouts.entries()),
           _step;
 
       try {
         for (_iterator.s(); !(_step = _iterator.n()).done;) {
-          var _step$value = (0, _slicedToArray2["default"])(_step.value, 2),
+          var _step$value = (0, _slicedToArray2.default)(_step.value, 2),
               layoutName = _step$value[0],
               sublayout = _step$value[1];
 
@@ -85,4 +91,4 @@ var MultiLayout = /*#__PURE__*/function () {
   return MultiLayout;
 }();
 
-exports["default"] = MultiLayout;
+exports.default = MultiLayout;

package/util/layouts/PrecomputedLayout.js

@@ -1,17 +1,19 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _ = require("..");
 
@@ -22,19 +24,19 @@ var PrecomputedLayout = /*#__PURE__*/function () {
     var rectangles = _ref.rectangles,
         totalHeight = _ref.totalHeight,
         maxHeightReached = _ref.maxHeightReached;
-    (0, _classCallCheck2["default"])(this, PrecomputedLayout);
-    this.rectangles = void 0;
-    this.totalHeight = void 0;
-    this.maxHeightReached = void 0;
-    this.rbush = void 0;
+    (0, _classCallCheck2.default)(this, PrecomputedLayout);
+    (0, _defineProperty2.default)(this, "rectangles", void 0);
+    (0, _defineProperty2.default)(this, "totalHeight", void 0);
+    (0, _defineProperty2.default)(this, "maxHeightReached", void 0);
+    (0, _defineProperty2.default)(this, "rbush", void 0);
     this.rectangles = new Map(Object.entries(rectangles)); // rectangles is of the form "featureId": [leftPx, topPx, rightPx, bottomPx]
 
     this.totalHeight = totalHeight;
     this.maxHeightReached = maxHeightReached;
-    this.rbush = new _rbush["default"]();
+    this.rbush = new _rbush.default();
 
     for (var _i = 0, _Object$entries = Object.entries(rectangles); _i < _Object$entries.length; _i++) {
-      var _Object$entries$_i = (0, _slicedToArray2["default"])(_Object$entries[_i], 2),
+      var _Object$entries$_i = (0, _slicedToArray2.default)(_Object$entries[_i], 2),
           key = _Object$entries$_i[0],
           layout = _Object$entries$_i[1];
 
@@ -48,7 +50,7 @@ var PrecomputedLayout = /*#__PURE__*/function () {
     }
   }
 
-  (0, _createClass2["default"])(PrecomputedLayout, [{
+  (0, _createClass2.default)(PrecomputedLayout, [{
     key: "addRect",
     value: function addRect(id) {
       var rect = this.rectangles.get(id);
@@ -123,4 +125,4 @@ var PrecomputedLayout = /*#__PURE__*/function () {
   return PrecomputedLayout;
 }();
 
-exports["default"] = PrecomputedLayout;
+exports.default = PrecomputedLayout;

package/util/layouts/PrecomputedMultiLayout.js

@@ -1,54 +1,60 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
+var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
 
-var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
+var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
 
-var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
+var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
 
-var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
 var _MultiLayout2 = _interopRequireDefault(require("./MultiLayout"));
 
 var _PrecomputedLayout = _interopRequireDefault(require("./PrecomputedLayout"));
 
-var ThrowingLayout = /*#__PURE__*/(0, _createClass2["default"])(function ThrowingLayout() {
-  (0, _classCallCheck2["default"])(this, ThrowingLayout);
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
+
+function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
+
+var ThrowingLayout = /*#__PURE__*/(0, _createClass2.default)(function ThrowingLayout() {
+  (0, _classCallCheck2.default)(this, ThrowingLayout);
   throw new Error('invalid layout name');
 });
 
 var PrecomputedMultiLayout = /*#__PURE__*/function (_MultiLayout) {
-  (0, _inherits2["default"])(PrecomputedMultiLayout, _MultiLayout);
+  (0, _inherits2.default)(PrecomputedMultiLayout, _MultiLayout);
 
-  var _super = (0, _createSuper2["default"])(PrecomputedMultiLayout);
+  var _super = _createSuper(PrecomputedMultiLayout);
 
   function PrecomputedMultiLayout(json) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, PrecomputedMultiLayout);
+    (0, _classCallCheck2.default)(this, PrecomputedMultiLayout);
     // use ThrowingLayout because there is not supposed to be any creation
     // of new layouts in a precomputed layout
     _this = _super.call(this, ThrowingLayout);
     Object.entries(json).forEach(function (_ref) {
-      var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
+      var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
           layoutName = _ref2[0],
           sublayoutJson = _ref2[1];
 
-      _this.subLayouts.set(layoutName, new _PrecomputedLayout["default"](sublayoutJson));
+      _this.subLayouts.set(layoutName, new _PrecomputedLayout.default(sublayoutJson));
     });
     return _this;
   }
 
-  return (0, _createClass2["default"])(PrecomputedMultiLayout);
-}(_MultiLayout2["default"]);
+  return (0, _createClass2.default)(PrecomputedMultiLayout);
+}(_MultiLayout2.default);
 
-exports["default"] = PrecomputedMultiLayout;
+exports.default = PrecomputedMultiLayout;

package/util/layouts/SceneGraph.js

@@ -1,36 +1,42 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
-var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
+var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
 
-var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
+var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
 
-var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
+var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
 
 var _ = require("..");
 
+function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
+
+function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
+
+function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
+
 var SceneGraph = /*#__PURE__*/function () {
   /**
    * note: all coordinates are inter-base or inter-pixel coordinates
    */
   function SceneGraph(name, left, top, width, height, // eslint-disable-next-line @typescript-eslint/no-explicit-any
   data) {
-    (0, _classCallCheck2["default"])(this, SceneGraph);
+    (0, _classCallCheck2.default)(this, SceneGraph);
     this.name = name;
     this.left = left;
     this.top = top;
     this.width = width;
     this.height = height;
     this.data = data;
-    this.children = void 0;
-    this.absoluteCache = void 0;
-    this.parent = void 0;
+    (0, _defineProperty2.default)(this, "children", void 0);
+    (0, _defineProperty2.default)(this, "absoluteCache", void 0);
+    (0, _defineProperty2.default)(this, "parent", void 0);
 
     if (_.inDevelopment && (typeof name !== 'string' || typeof left !== 'number' || Number.isNaN(left) || typeof top !== 'number' || Number.isNaN(top) || typeof width !== 'number' || Number.isNaN(width) || typeof height !== 'number' || Number.isNaN(height))) {
       throw new TypeError('invalid SceneGraph arguments');
@@ -42,7 +48,7 @@ var SceneGraph = /*#__PURE__*/function () {
     };
   }
 
-  (0, _createClass2["default"])(SceneGraph, [{
+  (0, _createClass2.default)(SceneGraph, [{
     key: "addChild",
     value: function addChild(nameOrSceneGraph, left, top, width, height, // eslint-disable-next-line @typescript-eslint/no-explicit-any
     data) {
@@ -149,7 +155,7 @@ var SceneGraph = /*#__PURE__*/function () {
   }, {
     key: "walkChildren",
     value: function walkChildren(callback) {
-      var _iterator = (0, _createForOfIteratorHelper2["default"])(this.children.values()),
+      var _iterator = _createForOfIteratorHelper(this.children.values()),
           _step;
 
       try {
@@ -210,4 +216,4 @@ var SceneGraph = /*#__PURE__*/function () {
   return SceneGraph;
 }();
 
-exports["default"] = SceneGraph;
+exports.default = SceneGraph;

package/util/layouts/index.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
+var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -15,31 +15,31 @@ var _exportNames = {
 Object.defineProperty(exports, "GranularRectLayout", {
   enumerable: true,
   get: function get() {
-    return _GranularRectLayout["default"];
+    return _GranularRectLayout.default;
   }
 });
 Object.defineProperty(exports, "MultiLayout", {
   enumerable: true,
   get: function get() {
-    return _MultiLayout["default"];
+    return _MultiLayout.default;
   }
 });
 Object.defineProperty(exports, "PrecomputedLayout", {
   enumerable: true,
   get: function get() {
-    return _PrecomputedLayout["default"];
+    return _PrecomputedLayout.default;
   }
 });
 Object.defineProperty(exports, "PrecomputedMultiLayout", {
   enumerable: true,
   get: function get() {
-    return _PrecomputedMultiLayout["default"];
+    return _PrecomputedMultiLayout.default;
   }
 });
 Object.defineProperty(exports, "SceneGraph", {
   enumerable: true,
   get: function get() {
-    return _SceneGraph["default"];
+    return _SceneGraph.default;
   }
 });