@jbrowse/core 1.5.7 → 1.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (155) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +91 -78
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +65 -57
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  4. package/BaseFeatureWidget/index.js +1 -1
  5. package/BaseFeatureWidget/index.test.js +4 -4
  6. package/BaseFeatureWidget/util.js +13 -9
  7. package/CorePlugin.js +32 -20
  8. package/Plugin.js +13 -11
  9. package/PluginLoader.js +38 -33
  10. package/PluginManager.d.ts +8 -5
  11. package/PluginManager.js +142 -53
  12. package/ReExports/index.js +4 -4
  13. package/ReExports/list.js +2 -2
  14. package/ReExports/material-ui-colors.js +20 -20
  15. package/ReExports/modules.d.ts +7 -5
  16. package/ReExports/modules.js +51 -47
  17. package/TextSearch/BaseResults.js +34 -24
  18. package/TextSearch/BaseResults.test.js +7 -3
  19. package/TextSearch/TextSearchManager.js +17 -15
  20. package/assemblyManager/assembly.js +39 -34
  21. package/assemblyManager/assemblyConfigSchema.js +2 -2
  22. package/assemblyManager/assemblyManager.js +20 -16
  23. package/assemblyManager/index.js +3 -3
  24. package/babel.config.d.ts +15 -0
  25. package/babel.config.js +19 -0
  26. package/configuration/configurationSchema.js +19 -17
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/index.d.ts +1 -0
  30. package/configuration/util.js +5 -5
  31. package/data_adapters/BaseAdapter.d.ts +15 -3
  32. package/data_adapters/BaseAdapter.js +216 -62
  33. package/data_adapters/BaseAdapter.test.js +30 -24
  34. package/data_adapters/CytobandAdapter.d.ts +1 -1
  35. package/data_adapters/CytobandAdapter.js +25 -19
  36. package/data_adapters/dataAdapterCache.js +9 -9
  37. package/package.json +4 -5
  38. package/pluggableElementTypes/AdapterType.js +31 -22
  39. package/pluggableElementTypes/ConnectionType.js +28 -18
  40. package/pluggableElementTypes/DisplayType.js +27 -17
  41. package/pluggableElementTypes/InternetAccountType.js +24 -14
  42. package/pluggableElementTypes/PluggableElementBase.js +10 -8
  43. package/pluggableElementTypes/RpcMethodType.d.ts +1 -1
  44. package/pluggableElementTypes/RpcMethodType.js +141 -118
  45. package/pluggableElementTypes/RpcMethodType.test.js +23 -17
  46. package/pluggableElementTypes/TextSearchAdapterType.js +25 -15
  47. package/pluggableElementTypes/TrackType.js +25 -15
  48. package/pluggableElementTypes/ViewType.js +25 -15
  49. package/pluggableElementTypes/WidgetType.js +27 -17
  50. package/pluggableElementTypes/index.js +11 -11
  51. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  52. package/pluggableElementTypes/models/BaseDisplayModel.js +8 -5
  53. package/pluggableElementTypes/models/BaseTrackModel.js +11 -8
  54. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  55. package/pluggableElementTypes/models/InternetAccountModel.d.ts +1 -1
  56. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  57. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  58. package/pluggableElementTypes/models/baseTrackConfig.js +7 -4
  59. package/pluggableElementTypes/models/index.js +4 -4
  60. package/pluggableElementTypes/renderers/BoxRendererType.js +49 -39
  61. package/pluggableElementTypes/renderers/CircularChordRendererType.js +18 -12
  62. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +35 -27
  63. package/pluggableElementTypes/renderers/FeatureRendererType.js +46 -36
  64. package/pluggableElementTypes/renderers/RendererType.js +31 -21
  65. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +12 -8
  66. package/pluggableElementTypes/renderers/ServerSideRendererType.d.ts +1 -1
  67. package/pluggableElementTypes/renderers/ServerSideRendererType.js +45 -33
  68. package/pluggableElementTypes/renderers/index.js +8 -8
  69. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +10 -8
  70. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  71. package/rpc/BaseRpcDriver.js +43 -38
  72. package/rpc/BaseRpcDriver.test.js +63 -49
  73. package/rpc/MainThreadRpcDriver.js +32 -22
  74. package/rpc/RpcManager.js +19 -17
  75. package/rpc/WebWorkerRpcDriver.js +38 -28
  76. package/rpc/configSchema.js +2 -2
  77. package/rpc/coreRpcMethods.d.ts +16 -0
  78. package/rpc/coreRpcMethods.js +248 -121
  79. package/rpc/remoteAbortSignals.js +3 -3
  80. package/ui/AboutDialog.js +21 -17
  81. package/ui/App.js +42 -38
  82. package/ui/AssemblySelector.d.ts +1 -1
  83. package/ui/AssemblySelector.js +6 -6
  84. package/ui/Drawer.js +7 -7
  85. package/ui/DrawerWidget.d.ts +1 -1
  86. package/ui/DrawerWidget.js +37 -33
  87. package/ui/DropDownMenu.js +21 -9
  88. package/ui/EditableTypography.js +30 -19
  89. package/ui/ErrorMessage.js +5 -5
  90. package/ui/FactoryResetDialog.js +8 -8
  91. package/ui/FatalErrorDialog.js +29 -12
  92. package/ui/FatalErrorDialog.test.js +11 -11
  93. package/ui/FileSelector/FileSelector.js +42 -32
  94. package/ui/FileSelector/LocalFileChooser.js +9 -9
  95. package/ui/FileSelector/UrlChooser.js +4 -4
  96. package/ui/FileSelector/index.js +4 -4
  97. package/ui/Icons.js +9 -9
  98. package/ui/Logo.js +19 -19
  99. package/ui/Menu.js +46 -35
  100. package/ui/NewSessionCards.js +29 -19
  101. package/ui/PrerenderedCanvas.js +27 -10
  102. package/ui/ResizeHandle.js +17 -10
  103. package/ui/SanitizedHTML.js +5 -5
  104. package/ui/SanitizedHTML.test.js +4 -4
  105. package/ui/Snackbar.js +16 -12
  106. package/ui/SnackbarModel.js +1 -1
  107. package/ui/Tooltip.js +11 -7
  108. package/ui/ViewContainer.d.ts +2 -5
  109. package/ui/ViewContainer.js +44 -49
  110. package/ui/index.d.ts +1 -0
  111. package/ui/index.js +26 -13
  112. package/ui/theme.js +15 -11
  113. package/util/Base1DViewModel.d.ts +14 -12
  114. package/util/Base1DViewModel.js +51 -55
  115. package/util/Base1DViewModel.test.js +5 -5
  116. package/util/QuickLRU.js +31 -27
  117. package/util/aborting.js +26 -16
  118. package/util/analytics.d.ts +1 -0
  119. package/util/analytics.js +15 -7
  120. package/util/blockTypes.js +48 -36
  121. package/util/calculateDynamicBlocks.js +4 -4
  122. package/util/calculateDynamicBlocks.test.js +14 -10
  123. package/util/calculateStaticBlocks.js +1 -1
  124. package/util/calculateStaticBlocks.test.js +15 -15
  125. package/util/compositeMap.js +31 -27
  126. package/util/idMaker.js +4 -4
  127. package/util/index.d.ts +23 -1
  128. package/util/index.js +135 -41
  129. package/util/index.test.js +11 -7
  130. package/util/io/RemoteFileWithRangeCache.js +41 -29
  131. package/util/io/index.js +6 -6
  132. package/util/jexl.js +5 -5
  133. package/util/jexlStrings.js +2 -2
  134. package/util/jexlStrings.test.js +2 -2
  135. package/util/layouts/GranularRectLayout.js +33 -27
  136. package/util/layouts/GranularRectLayout.test.js +10 -10
  137. package/util/layouts/MultiLayout.js +19 -13
  138. package/util/layouts/PrecomputedLayout.js +16 -14
  139. package/util/layouts/PrecomputedMultiLayout.js +23 -17
  140. package/util/layouts/SceneGraph.js +18 -12
  141. package/util/layouts/index.js +6 -6
  142. package/util/offscreenCanvasPonyfill.js +31 -29
  143. package/util/offscreenCanvasUtils.js +6 -6
  144. package/util/range.test.js +20 -20
  145. package/util/rxjs.js +2 -2
  146. package/util/simpleFeature.js +23 -18
  147. package/util/simpleFeature.test.js +3 -3
  148. package/util/stats.d.ts +1 -1
  149. package/util/stats.js +11 -7
  150. package/util/stats.test.js +16 -16
  151. package/util/tracks.js +1 -3
  152. package/util/types/index.d.ts +1 -1
  153. package/util/types/index.js +36 -31
  154. package/util/types/mst.js +19 -15
  155. package/util/when.js +6 -6
@@ -1,28 +1,28 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
  exports.watchWorker = watchWorker;
10
10
 
11
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
11
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
12
12
 
13
- var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
13
+ var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
14
14
 
15
- var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
15
+ var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
16
16
 
17
- var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
17
+ var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
18
18
 
19
- var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
19
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
20
20
 
21
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
21
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
22
22
 
23
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
23
+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
24
24
 
25
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
25
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
26
26
 
27
27
  var _mobxStateTree = require("mobx-state-tree");
28
28
 
@@ -30,6 +30,10 @@ var _util = require("../util");
30
30
 
31
31
  var _remoteAbortSignals = require("./remoteAbortSignals");
32
32
 
33
+ function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
34
+
35
+ function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
36
+
33
37
  function isClonable(thing) {
34
38
  if (typeof thing === 'function') {
35
39
  return false;
@@ -49,8 +53,8 @@ function watchWorker(_x, _x2, _x3) {
49
53
  }
50
54
 
51
55
  function _watchWorker() {
52
- _watchWorker = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3(worker, pingTime, rpcDriverClassName) {
53
- return _index["default"].wrap(function _callee3$(_context3) {
56
+ _watchWorker = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(worker, pingTime, rpcDriverClassName) {
57
+ return _regenerator.default.wrap(function _callee3$(_context3) {
54
58
  while (1) {
55
59
  switch (_context3.prev = _context3.next) {
56
60
  case 0:
@@ -63,8 +67,8 @@ function _watchWorker() {
63
67
  case 2:
64
68
  return _context3.abrupt("return", new Promise(function (_resolve, reject) {
65
69
  function delay() {
66
- setTimeout( /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
67
- return _index["default"].wrap(function _callee2$(_context2) {
70
+ setTimeout( /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
71
+ return _regenerator.default.wrap(function _callee2$(_context2) {
68
72
  while (1) {
69
73
  switch (_context2.prev = _context2.next) {
70
74
  case 0:
@@ -120,21 +124,22 @@ function detectHardwareConcurrency() {
120
124
 
121
125
  var LazyWorker = /*#__PURE__*/function () {
122
126
  function LazyWorker(driver) {
123
- (0, _classCallCheck2["default"])(this, LazyWorker);
127
+ (0, _classCallCheck2.default)(this, LazyWorker);
124
128
  this.driver = driver;
125
- this.worker = void 0;
129
+ (0, _defineProperty2.default)(this, "worker", void 0);
126
130
  }
127
131
 
128
- (0, _createClass2["default"])(LazyWorker, [{
132
+ (0, _createClass2.default)(LazyWorker, [{
129
133
  key: "getWorker",
130
134
  value: function getWorker(pluginManager, rpcDriverClassName) {
131
135
  var _this = this;
132
136
 
133
137
  if (!this.worker) {
134
138
  var worker = this.driver.makeWorker(pluginManager);
135
- watchWorker(worker, this.driver.maxPingTime, rpcDriverClassName)["catch"](function (error) {
139
+ watchWorker(worker, this.driver.maxPingTime, rpcDriverClassName).catch(function (error) {
136
140
  if (_this.worker) {
137
- console.warn("worker did not respond, killing and generating new one ".concat(error));
141
+ console.error('worker did not respond, killing and generating new one');
142
+ console.error(error);
138
143
 
139
144
  _this.worker.destroy();
140
145
 
@@ -154,20 +159,20 @@ var LazyWorker = /*#__PURE__*/function () {
154
159
 
155
160
  var BaseRpcDriver = /*#__PURE__*/function () {
156
161
  function BaseRpcDriver(args) {
157
- (0, _classCallCheck2["default"])(this, BaseRpcDriver);
158
- this.name = void 0;
159
- this.lastWorkerAssignment = -1;
160
- this.workerAssignments = new Map();
161
- this.workerCount = 0;
162
- this.workerPool = void 0;
163
- this.maxPingTime = 30000;
164
- this.workerCheckFrequency = 5000;
165
- this.config = void 0;
162
+ (0, _classCallCheck2.default)(this, BaseRpcDriver);
163
+ (0, _defineProperty2.default)(this, "name", void 0);
164
+ (0, _defineProperty2.default)(this, "lastWorkerAssignment", -1);
165
+ (0, _defineProperty2.default)(this, "workerAssignments", new Map());
166
+ (0, _defineProperty2.default)(this, "workerCount", 0);
167
+ (0, _defineProperty2.default)(this, "workerPool", void 0);
168
+ (0, _defineProperty2.default)(this, "maxPingTime", 30000);
169
+ (0, _defineProperty2.default)(this, "workerCheckFrequency", 5000);
170
+ (0, _defineProperty2.default)(this, "config", void 0);
166
171
  this.config = args.config;
167
172
  } // filter the given object and just remove any non-clonable things from it
168
173
 
169
174
 
170
- (0, _createClass2["default"])(BaseRpcDriver, [{
175
+ (0, _createClass2.default)(BaseRpcDriver, [{
171
176
  key: "filterArgs",
172
177
  value: function filterArgs(thing, pluginManager, sessionId) {
173
178
  var _this2 = this;
@@ -178,7 +183,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
178
183
  });
179
184
  }
180
185
 
181
- if ((0, _typeof2["default"])(thing) === 'object' && thing !== null) {
186
+ if ((0, _typeof2.default)(thing) === 'object' && thing !== null) {
182
187
  // AbortSignals are specially handled
183
188
  if (thing instanceof AbortSignal) {
184
189
  return (0, _remoteAbortSignals.serializeAbortSignal)(thing, this.remoteAbort.bind(this, pluginManager, sessionId));
@@ -197,7 +202,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
197
202
  return (0, _util.objectFromEntries)(Object.entries(thing).filter(function (e) {
198
203
  return isClonable(e[1]);
199
204
  }).map(function (_ref) {
200
- var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
205
+ var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
201
206
  k = _ref2[0],
202
207
  v = _ref2[1];
203
208
 
@@ -225,7 +230,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
225
230
 
226
231
  var hardwareConcurrency = detectHardwareConcurrency();
227
232
  var workerCount = this.workerCount || Math.max(1, Math.ceil((hardwareConcurrency - 2) / 3));
228
- return (0, _toConsumableArray2["default"])(new Array(workerCount)).map(function () {
233
+ return (0, _toConsumableArray2.default)(new Array(workerCount)).map(function () {
229
234
  return new LazyWorker(_this3);
230
235
  });
231
236
  }
@@ -265,7 +270,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
265
270
  }, {
266
271
  key: "call",
267
272
  value: function () {
268
- var _call = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(pluginManager, sessionId, functionName, args) {
273
+ var _call = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(pluginManager, sessionId, functionName, args) {
269
274
  var _this4 = this;
270
275
 
271
276
  var options,
@@ -279,7 +284,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
279
284
  killedP,
280
285
  resultP,
281
286
  _args = arguments;
282
- return _index["default"].wrap(function _callee$(_context) {
287
+ return _regenerator.default.wrap(function _callee$(_context) {
283
288
  while (1) {
284
289
  switch (_context.prev = _context.next) {
285
290
  case 0:
@@ -303,12 +308,12 @@ var BaseRpcDriver = /*#__PURE__*/function () {
303
308
  serializedArgs = _context.sent;
304
309
  filteredAndSerializedArgs = this.filterArgs(serializedArgs, pluginManager, sessionId); // now actually call the worker
305
310
 
306
- callP = worker.call(functionName, filteredAndSerializedArgs, (0, _objectSpread2["default"])({
311
+ callP = worker.call(functionName, filteredAndSerializedArgs, _objectSpread({
307
312
  timeout: 5 * 60 * 1000,
308
313
  // 5 minutes
309
314
  statusCallback: args.statusCallback,
310
315
  rpcDriverClassName: this.name
311
- }, options))["finally"](function () {
316
+ }, options)).finally(function () {
312
317
  done = true;
313
318
  }); // check every 5 seconds to see if the worker has been killed, and
314
319
  // reject the killedP promise if it has
@@ -322,7 +327,7 @@ var BaseRpcDriver = /*#__PURE__*/function () {
322
327
  resolve(true);
323
328
  }
324
329
  }, _this4.workerCheckFrequency);
325
- })["finally"](function () {
330
+ }).finally(function () {
326
331
  clearInterval(killedCheckInterval);
327
332
  }); // the result is a race between the actual result promise, and the "killed"
328
333
  // promise. the killed promise will only actually win if the worker was
@@ -349,4 +354,4 @@ var BaseRpcDriver = /*#__PURE__*/function () {
349
354
  return BaseRpcDriver;
350
355
  }();
351
356
 
352
- exports["default"] = BaseRpcDriver;
357
+ exports.default = BaseRpcDriver;
@@ -1,25 +1,31 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireWildcard = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
5
+ var _typeof = require("@babel/runtime/helpers/typeof");
6
6
 
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
10
  exports.MockRendererTimeout = exports.MockRendererShort = void 0;
11
11
 
12
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
12
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
13
13
 
14
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
14
+ var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
15
15
 
16
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
16
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
17
17
 
18
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
18
+ var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
19
19
 
20
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
20
+ var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
21
21
 
22
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
22
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
23
+
24
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
25
+
26
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
27
+
28
+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
23
29
 
24
30
  var _PluginManager = _interopRequireDefault(require("../PluginManager"));
25
31
 
@@ -31,6 +37,14 @@ var _RpcMethodType3 = _interopRequireDefault(require("../pluggableElementTypes/R
31
37
 
32
38
  var _configuration = require("../configuration");
33
39
 
40
+ function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
41
+
42
+ function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
43
+
44
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
45
+
46
+ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
47
+
34
48
  function timeout(ms) {
35
49
  return new Promise(function (resolve) {
36
50
  setTimeout(function () {
@@ -41,23 +55,23 @@ function timeout(ms) {
41
55
 
42
56
  var MockWorkerHandle = /*#__PURE__*/function () {
43
57
  function MockWorkerHandle() {
44
- (0, _classCallCheck2["default"])(this, MockWorkerHandle);
45
- this.busy = false;
58
+ (0, _classCallCheck2.default)(this, MockWorkerHandle);
59
+ (0, _defineProperty2.default)(this, "busy", false);
46
60
  }
47
61
 
48
- (0, _createClass2["default"])(MockWorkerHandle, [{
62
+ (0, _createClass2.default)(MockWorkerHandle, [{
49
63
  key: "destroy",
50
64
  value: function destroy() {}
51
65
  }, {
52
66
  key: "call",
53
67
  value: function () {
54
- var _call = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(name) {
68
+ var _call = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(name) {
55
69
  var _args,
56
70
  opts,
57
71
  start,
58
72
  _args2 = arguments;
59
73
 
60
- return _index["default"].wrap(function _callee$(_context) {
74
+ return _regenerator.default.wrap(function _callee$(_context) {
61
75
  while (1) {
62
76
  switch (_context.prev = _context.next) {
63
77
  case 0:
@@ -208,9 +222,9 @@ var MockWorkerHandle = /*#__PURE__*/function () {
208
222
  return MockWorkerHandle;
209
223
  }();
210
224
 
211
- test('watch worker with long ping, generates timeout', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
225
+ test('watch worker with long ping, generates timeout', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
212
226
  var worker, workerWatcher, result;
213
- return _index["default"].wrap(function _callee2$(_context2) {
227
+ return _regenerator.default.wrap(function _callee2$(_context2) {
214
228
  while (1) {
215
229
  switch (_context2.prev = _context2.next) {
216
230
  case 0:
@@ -241,9 +255,9 @@ test('watch worker with long ping, generates timeout', /*#__PURE__*/(0, _asyncTo
241
255
  }
242
256
  }, _callee2, null, [[2, 9]]);
243
257
  })));
244
- test('test worker abort', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3() {
258
+ test('test worker abort', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
245
259
  var worker, controller, resultP;
246
- return _index["default"].wrap(function _callee3$(_context3) {
260
+ return _regenerator.default.wrap(function _callee3$(_context3) {
247
261
  while (1) {
248
262
  switch (_context3.prev = _context3.next) {
249
263
  case 0:
@@ -276,9 +290,9 @@ test('test worker abort', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__
276
290
  }
277
291
  }, _callee3, null, [[2, 10]]);
278
292
  })));
279
- test('watch worker generates multiple pings', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee4() {
293
+ test('watch worker generates multiple pings', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4() {
280
294
  var worker, workerWatcher, result;
281
- return _index["default"].wrap(function _callee4$(_context4) {
295
+ return _regenerator.default.wrap(function _callee4$(_context4) {
282
296
  while (1) {
283
297
  switch (_context4.prev = _context4.next) {
284
298
  case 0:
@@ -297,59 +311,59 @@ test('watch worker generates multiple pings', /*#__PURE__*/(0, _asyncToGenerator
297
311
  })));
298
312
 
299
313
  var MockRpcDriver = /*#__PURE__*/function (_BaseRpcDriver) {
300
- (0, _inherits2["default"])(MockRpcDriver, _BaseRpcDriver);
314
+ (0, _inherits2.default)(MockRpcDriver, _BaseRpcDriver);
301
315
 
302
- var _super = (0, _createSuper2["default"])(MockRpcDriver);
316
+ var _super = _createSuper(MockRpcDriver);
303
317
 
304
318
  function MockRpcDriver() {
305
319
  var _this;
306
320
 
307
- (0, _classCallCheck2["default"])(this, MockRpcDriver);
321
+ (0, _classCallCheck2.default)(this, MockRpcDriver);
308
322
 
309
323
  for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
310
324
  args[_key] = arguments[_key];
311
325
  }
312
326
 
313
327
  _this = _super.call.apply(_super, [this].concat(args));
314
- _this.name = 'MockRpcDriver';
315
- _this.maxPingTime = 1000;
316
- _this.workerCheckFrequency = 500;
328
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'MockRpcDriver');
329
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "maxPingTime", 1000);
330
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "workerCheckFrequency", 500);
317
331
  return _this;
318
332
  }
319
333
 
320
- (0, _createClass2["default"])(MockRpcDriver, [{
334
+ (0, _createClass2.default)(MockRpcDriver, [{
321
335
  key: "makeWorker",
322
336
  value: function makeWorker(_pluginManager) {
323
337
  return new MockWorkerHandle();
324
338
  }
325
339
  }]);
326
340
  return MockRpcDriver;
327
- }(_BaseRpcDriver2["default"]);
341
+ }(_BaseRpcDriver2.default);
328
342
 
329
343
  var MockRendererTimeout = /*#__PURE__*/function (_RpcMethodType) {
330
- (0, _inherits2["default"])(MockRendererTimeout, _RpcMethodType);
344
+ (0, _inherits2.default)(MockRendererTimeout, _RpcMethodType);
331
345
 
332
- var _super2 = (0, _createSuper2["default"])(MockRendererTimeout);
346
+ var _super2 = _createSuper(MockRendererTimeout);
333
347
 
334
348
  function MockRendererTimeout() {
335
349
  var _this2;
336
350
 
337
- (0, _classCallCheck2["default"])(this, MockRendererTimeout);
351
+ (0, _classCallCheck2.default)(this, MockRendererTimeout);
338
352
 
339
353
  for (var _len2 = arguments.length, args = new Array(_len2), _key2 = 0; _key2 < _len2; _key2++) {
340
354
  args[_key2] = arguments[_key2];
341
355
  }
342
356
 
343
357
  _this2 = _super2.call.apply(_super2, [this].concat(args));
344
- _this2.name = 'MockRenderTimeout';
358
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this2), "name", 'MockRenderTimeout');
345
359
  return _this2;
346
360
  }
347
361
 
348
- (0, _createClass2["default"])(MockRendererTimeout, [{
362
+ (0, _createClass2.default)(MockRendererTimeout, [{
349
363
  key: "execute",
350
364
  value: function () {
351
- var _execute = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee5() {
352
- return _index["default"].wrap(function _callee5$(_context5) {
365
+ var _execute = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5() {
366
+ return _regenerator.default.wrap(function _callee5$(_context5) {
353
367
  while (1) {
354
368
  switch (_context5.prev = _context5.next) {
355
369
  case 0:
@@ -368,34 +382,34 @@ var MockRendererTimeout = /*#__PURE__*/function (_RpcMethodType) {
368
382
  }()
369
383
  }]);
370
384
  return MockRendererTimeout;
371
- }(_RpcMethodType3["default"]);
385
+ }(_RpcMethodType3.default);
372
386
 
373
387
  exports.MockRendererTimeout = MockRendererTimeout;
374
388
 
375
389
  var MockRendererShort = /*#__PURE__*/function (_RpcMethodType2) {
376
- (0, _inherits2["default"])(MockRendererShort, _RpcMethodType2);
390
+ (0, _inherits2.default)(MockRendererShort, _RpcMethodType2);
377
391
 
378
- var _super3 = (0, _createSuper2["default"])(MockRendererShort);
392
+ var _super3 = _createSuper(MockRendererShort);
379
393
 
380
394
  function MockRendererShort() {
381
395
  var _this3;
382
396
 
383
- (0, _classCallCheck2["default"])(this, MockRendererShort);
397
+ (0, _classCallCheck2.default)(this, MockRendererShort);
384
398
 
385
399
  for (var _len3 = arguments.length, args = new Array(_len3), _key3 = 0; _key3 < _len3; _key3++) {
386
400
  args[_key3] = arguments[_key3];
387
401
  }
388
402
 
389
403
  _this3 = _super3.call.apply(_super3, [this].concat(args));
390
- _this3.name = 'MockRenderShort';
404
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this3), "name", 'MockRenderShort');
391
405
  return _this3;
392
406
  }
393
407
 
394
- (0, _createClass2["default"])(MockRendererShort, [{
408
+ (0, _createClass2.default)(MockRendererShort, [{
395
409
  key: "execute",
396
410
  value: function () {
397
- var _execute2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee6() {
398
- return _index["default"].wrap(function _callee6$(_context6) {
411
+ var _execute2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6() {
412
+ return _regenerator.default.wrap(function _callee6$(_context6) {
399
413
  while (1) {
400
414
  switch (_context6.prev = _context6.next) {
401
415
  case 0:
@@ -414,12 +428,12 @@ var MockRendererShort = /*#__PURE__*/function (_RpcMethodType2) {
414
428
  }()
415
429
  }]);
416
430
  return MockRendererShort;
417
- }(_RpcMethodType3["default"]);
431
+ }(_RpcMethodType3.default);
418
432
 
419
433
  exports.MockRendererShort = MockRendererShort;
420
- test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee7() {
434
+ test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7() {
421
435
  var config, driver, pluginManager;
422
- return _index["default"].wrap(function _callee7$(_context7) {
436
+ return _regenerator.default.wrap(function _callee7$(_context7) {
423
437
  while (1) {
424
438
  switch (_context7.prev = _context7.next) {
425
439
  case 0:
@@ -429,7 +443,7 @@ test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _a
429
443
  driver = new MockRpcDriver({
430
444
  config: config
431
445
  });
432
- pluginManager = new _PluginManager["default"]();
446
+ pluginManager = new _PluginManager.default();
433
447
  pluginManager.addRpcMethod(function () {
434
448
  return new MockRendererTimeout(pluginManager);
435
449
  });
@@ -461,9 +475,9 @@ test('test RPC driver operation timeout and worker replace', /*#__PURE__*/(0, _a
461
475
  }
462
476
  }, _callee7, null, [[8, 13]]);
463
477
  })));
464
- test('remote abort', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee8() {
478
+ test('remote abort', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee8() {
465
479
  var config, driver, pluginManager, controller, resP;
466
- return _index["default"].wrap(function _callee8$(_context8) {
480
+ return _regenerator.default.wrap(function _callee8$(_context8) {
467
481
  while (1) {
468
482
  switch (_context8.prev = _context8.next) {
469
483
  case 0:
@@ -473,7 +487,7 @@ test('remote abort', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE_
473
487
  driver = new MockRpcDriver({
474
488
  config: config
475
489
  });
476
- pluginManager = new _PluginManager["default"]();
490
+ pluginManager = new _PluginManager.default();
477
491
  pluginManager.addRpcMethod(function () {
478
492
  return new MockRendererShort(pluginManager);
479
493
  });
@@ -1,42 +1,52 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
3
+ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
- var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
10
+ var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
12
- var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
12
+ var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
13
13
 
14
- var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
14
+ var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
15
15
 
16
- var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
16
+ var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
17
17
 
18
- var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
18
+ var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
19
19
 
20
- var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
20
+ var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
21
+
22
+ var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
23
+
24
+ var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
25
+
26
+ var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
21
27
 
22
28
  var _BaseRpcDriver2 = _interopRequireDefault(require("./BaseRpcDriver"));
23
29
 
30
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
31
+
32
+ function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
33
+
24
34
  var DummyHandle = /*#__PURE__*/function () {
25
35
  function DummyHandle() {
26
- (0, _classCallCheck2["default"])(this, DummyHandle);
36
+ (0, _classCallCheck2.default)(this, DummyHandle);
27
37
  }
28
38
 
29
- (0, _createClass2["default"])(DummyHandle, [{
39
+ (0, _createClass2.default)(DummyHandle, [{
30
40
  key: "destroy",
31
41
  value: function destroy() {}
32
42
  }, {
33
43
  key: "call",
34
44
  value: function () {
35
- var _call = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(_functionName, _filteredArgs) {
45
+ var _call = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(_functionName, _filteredArgs) {
36
46
  var _options,
37
47
  _args = arguments;
38
48
 
39
- return _index["default"].wrap(function _callee$(_context) {
49
+ return _regenerator.default.wrap(function _callee$(_context) {
40
50
  while (1) {
41
51
  switch (_context.prev = _context.next) {
42
52
  case 0:
@@ -68,17 +78,17 @@ var DummyHandle = /*#__PURE__*/function () {
68
78
 
69
79
 
70
80
  var MainThreadRpcDriver = /*#__PURE__*/function (_BaseRpcDriver) {
71
- (0, _inherits2["default"])(MainThreadRpcDriver, _BaseRpcDriver);
81
+ (0, _inherits2.default)(MainThreadRpcDriver, _BaseRpcDriver);
72
82
 
73
- var _super = (0, _createSuper2["default"])(MainThreadRpcDriver);
83
+ var _super = _createSuper(MainThreadRpcDriver);
74
84
 
75
85
  function MainThreadRpcDriver(args) {
76
86
  var _this;
77
87
 
78
- (0, _classCallCheck2["default"])(this, MainThreadRpcDriver);
88
+ (0, _classCallCheck2.default)(this, MainThreadRpcDriver);
79
89
  _this = _super.call(this, args);
80
- _this.name = 'MainThreadRpcDriver';
81
- _this.makeWorker = void 0;
90
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "name", 'MainThreadRpcDriver');
91
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "makeWorker", void 0);
82
92
 
83
93
  _this.makeWorker = function () {
84
94
  return new DummyHandle();
@@ -87,12 +97,12 @@ var MainThreadRpcDriver = /*#__PURE__*/function (_BaseRpcDriver) {
87
97
  return _this;
88
98
  }
89
99
 
90
- (0, _createClass2["default"])(MainThreadRpcDriver, [{
100
+ (0, _createClass2.default)(MainThreadRpcDriver, [{
91
101
  key: "call",
92
102
  value: function () {
93
- var _call2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(pluginManager, sessionId, functionName, args) {
103
+ var _call2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(pluginManager, sessionId, functionName, args) {
94
104
  var rpcMethod, serializedArgs, result;
95
- return _index["default"].wrap(function _callee2$(_context2) {
105
+ return _regenerator.default.wrap(function _callee2$(_context2) {
96
106
  while (1) {
97
107
  switch (_context2.prev = _context2.next) {
98
108
  case 0:
@@ -133,6 +143,6 @@ var MainThreadRpcDriver = /*#__PURE__*/function (_BaseRpcDriver) {
133
143
  }()
134
144
  }]);
135
145
  return MainThreadRpcDriver;
136
- }(_BaseRpcDriver2["default"]);
146
+ }(_BaseRpcDriver2.default);
137
147
 
138
- exports["default"] = MainThreadRpcDriver;
148
+ exports.default = MainThreadRpcDriver;