@jbrowse/core 1.5.4 → 1.5.8

package/pluggableElementTypes/WidgetType.js

@@ -1,48 +1,38 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = void 0;
+exports["default"] = void 0;
 
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
+var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
 
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
+var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
 
-var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
+var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
 
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
-
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
-
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
 
 var _PluggableElementBase2 = _interopRequireDefault(require("./PluggableElementBase"));
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
 var WidgetType = /*#__PURE__*/function (_PluggableElementBase) {
-  (0, _inherits2.default)(WidgetType, _PluggableElementBase);
+  (0, _inherits2["default"])(WidgetType, _PluggableElementBase);
 
-  var _super = _createSuper(WidgetType);
+  var _super = (0, _createSuper2["default"])(WidgetType);
 
   // eslint-disable-next-line @typescript-eslint/no-explicit-any
   function WidgetType(stuff) {
     var _this;
 
-    (0, _classCallCheck2.default)(this, WidgetType);
+    (0, _classCallCheck2["default"])(this, WidgetType);
     _this = _super.call(this, stuff);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "heading", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "configSchema", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "HeadingComponent", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "ReactComponent", void 0);
-    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "stateModel", void 0);
+    _this.heading = void 0;
+    _this.configSchema = void 0;
+    _this.HeadingComponent = void 0;
+    _this.ReactComponent = void 0;
+    _this.stateModel = void 0;
     _this.heading = stuff.heading;
     _this.HeadingComponent = stuff.HeadingComponent;
     _this.configSchema = stuff.configSchema;
@@ -60,7 +50,7 @@ var WidgetType = /*#__PURE__*/function (_PluggableElementBase) {
     return _this;
   }
 
-  return (0, _createClass2.default)(WidgetType);
-}(_PluggableElementBase2.default);
+  return (0, _createClass2["default"])(WidgetType);
+}(_PluggableElementBase2["default"]);
 
-exports.default = WidgetType;
+exports["default"] = WidgetType;

package/pluggableElementTypes/index.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -20,61 +20,61 @@ var _exportNames = {
 Object.defineProperty(exports, "AdapterType", {
   enumerable: true,
   get: function get() {
-    return _AdapterType.default;
+    return _AdapterType["default"];
   }
 });
 Object.defineProperty(exports, "ConnectionType", {
   enumerable: true,
   get: function get() {
-    return _ConnectionType.default;
+    return _ConnectionType["default"];
   }
 });
 Object.defineProperty(exports, "DisplayType", {
   enumerable: true,
   get: function get() {
-    return _DisplayType.default;
+    return _DisplayType["default"];
   }
 });
 Object.defineProperty(exports, "InternetAccountType", {
   enumerable: true,
   get: function get() {
-    return _InternetAccountType.default;
+    return _InternetAccountType["default"];
   }
 });
 Object.defineProperty(exports, "RendererType", {
   enumerable: true,
   get: function get() {
-    return _RendererType.default;
+    return _RendererType["default"];
   }
 });
 Object.defineProperty(exports, "RpcMethodType", {
   enumerable: true,
   get: function get() {
-    return _RpcMethodType.default;
+    return _RpcMethodType["default"];
   }
 });
 Object.defineProperty(exports, "TextSearchAdapterType", {
   enumerable: true,
   get: function get() {
-    return _TextSearchAdapterType.default;
+    return _TextSearchAdapterType["default"];
   }
 });
 Object.defineProperty(exports, "TrackType", {
   enumerable: true,
   get: function get() {
-    return _TrackType.default;
+    return _TrackType["default"];
   }
 });
 Object.defineProperty(exports, "ViewType", {
   enumerable: true,
   get: function get() {
-    return _ViewType.default;
+    return _ViewType["default"];
   }
 });
 Object.defineProperty(exports, "WidgetType", {
   enumerable: true,
   get: function get() {
-    return _WidgetType.default;
+    return _WidgetType["default"];
   }
 });
 

package/pluggableElementTypes/models/BaseConnectionModelFactory.js

@@ -1,13 +1,13 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = void 0;
+exports["default"] = void 0;
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -29,7 +29,7 @@ var _default = function _default(pluginManager) {
       addTrackConfs: function addTrackConfs(trackConfs) {
         var _self$tracks;
 
-        var length = (_self$tracks = self.tracks).push.apply(_self$tracks, (0, _toConsumableArray2.default)(trackConfs));
+        var length = (_self$tracks = self.tracks).push.apply(_self$tracks, (0, _toConsumableArray2["default"])(trackConfs));
 
         return self.tracks.slice(length - 1 - trackConfs.length, length - 1);
       },
@@ -42,4 +42,4 @@ var _default = function _default(pluginManager) {
   });
 };
 
-exports.default = _default;
+exports["default"] = _default;

package/pluggableElementTypes/models/BaseDisplayModel.js

@@ -1,13 +1,13 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.BaseDisplay = void 0;
 
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -17,15 +17,12 @@ var _tracks = require("../../util/tracks");
 
 var _mst = require("../../util/types/mst");
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
+/* eslint-disable @typescript-eslint/no-explicit-any */
 var BaseDisplay = _mobxStateTree.types.model('BaseDisplay', {
   id: _mst.ElementId,
   type: _mobxStateTree.types.string,
   rpcDriverName: _mobxStateTree.types.maybe(_mobxStateTree.types.string)
-}).volatile(function () {
+})["volatile"](function () {
   return {
     rendererTypeName: '',
     error: undefined
@@ -67,7 +64,7 @@ var BaseDisplay = _mobxStateTree.types.model('BaseDisplay', {
      * is rendered in this display
      */
     renderProps: function renderProps() {
-      return _objectSpread(_objectSpread({}, (0, _tracks.getParentRenderProps)(self)), {}, {
+      return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, (0, _tracks.getParentRenderProps)(self)), {}, {
         rpcDriverName: self.rpcDriverName,
         displayModel: self
       });

package/pluggableElementTypes/models/BaseTrackModel.js

@@ -1,15 +1,15 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.createBaseTrackModel = createBaseTrackModel;
 
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
 
 var _mobx = require("mobx");
 
@@ -25,10 +25,7 @@ var _types = require("../../util/types");
 
 var _mst = require("../../util/types/mst");
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
+/* eslint-disable @typescript-eslint/no-explicit-any */
 // these MST models only exist for tracks that are *shown*.
 // they should contain only UI state for the track, and have
 // a reference to a track configuration (stored under
@@ -79,7 +76,7 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
       get viewMenuActions() {
         var menuItems = [];
         self.displays.forEach(function (display) {
-          menuItems.push.apply(menuItems, (0, _toConsumableArray2.default)(display.viewMenuActions));
+          menuItems.push.apply(menuItems, (0, _toConsumableArray2["default"])(display.viewMenuActions));
         });
         return menuItems;
       },
@@ -122,7 +119,7 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
           throw new Error("unknown display type ".concat(configuration.type));
         }
 
-        var display = displayType.stateModel.create(_objectSpread(_objectSpread({}, initialSnapshot), {}, {
+        var display = displayType.stateModel.create((0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, initialSnapshot), {}, {
           type: configuration.type,
           configuration: configuration
         }));
@@ -160,7 +157,7 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
           throw new Error("unknown display type ".concat(configuration.type));
         }
 
-        self.displays.splice(displayIdx, 1, _objectSpread(_objectSpread({}, initialSnapshot), {}, {
+        self.displays.splice(displayIdx, 1, (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, initialSnapshot), {}, {
           type: configuration.type,
           configuration: configuration
         }));
@@ -171,7 +168,7 @@ function createBaseTrackModel(pluginManager, trackType, baseTrackConfig) {
       trackMenuItems: function trackMenuItems() {
         var menuItems = [];
         self.displays.forEach(function (display) {
-          menuItems.push.apply(menuItems, (0, _toConsumableArray2.default)(display.trackMenuItems()));
+          menuItems.push.apply(menuItems, (0, _toConsumableArray2["default"])(display.trackMenuItems()));
         });
         var displayChoices = [];
         var view = (0, _util.getContainingView)(self);

package/pluggableElementTypes/models/BaseViewModel.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = void 0;
+exports["default"] = void 0;
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -12,7 +12,7 @@ var _mst = require("../../util/types/mst");
 var BaseViewModel = _mobxStateTree.types.model('BaseView', {
   id: _mst.ElementId,
   displayName: _mobxStateTree.types.maybe(_mobxStateTree.types.string)
-}).volatile(function
+})["volatile"](function
   /* self */
 () {
   return {
@@ -39,4 +39,4 @@ var BaseViewModel = _mobxStateTree.types.model('BaseView', {
 
 var _default = BaseViewModel; // eslint-disable-next-line @typescript-eslint/no-empty-interface,@typescript-eslint/interface-name-prefix
 
-exports.default = _default;
+exports["default"] = _default;

package/pluggableElementTypes/models/InternetAccountModel.js

@@ -1,15 +1,15 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.InternetAccount = void 0;
 
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
+var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -62,8 +62,8 @@ var InternetAccount = _mobxStateTree.types.model('InternetAccount', {
       return new _io.RemoteFileWithRangeCache(String(location.uri));
     },
     getPreAuthorizationInformation: function getPreAuthorizationInformation(location) {
-      return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
-        return _regenerator.default.wrap(function _callee$(_context) {
+      return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
+        return _index["default"].wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:

package/pluggableElementTypes/models/baseConnectionConfig.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = void 0;
+exports["default"] = void 0;
 
 var _configuration = require("../../configuration");
 
@@ -23,4 +23,4 @@ var _default = (0, _configuration.ConfigurationSchema)('BaseConnection', {
   explicitIdentifier: 'connectionId'
 });
 
-exports.default = _default;
+exports["default"] = _default;

package/pluggableElementTypes/models/baseTrackConfig.js

@@ -1,22 +1,19 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
 exports.createBaseTrackConfig = createBaseTrackConfig;
 
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
 var _configuration = require("../../configuration");
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
+/* eslint-disable @typescript-eslint/no-explicit-any */
 function createBaseTrackConfig(pluginManager) {
   return (0, _configuration.ConfigurationSchema)('BaseTrack', {
     name: {
@@ -96,7 +93,7 @@ function createBaseTrackConfig(pluginManager) {
         });
       }
 
-      return _objectSpread(_objectSpread({}, snap), {}, {
+      return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, snap), {}, {
         displays: displays
       });
     },

package/pluggableElementTypes/models/index.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "BaseConnectionModelFactory", {
   enumerable: true,
   get: function get() {
-    return _BaseConnectionModelFactory.default;
+    return _BaseConnectionModelFactory["default"];
   }
 });
 Object.defineProperty(exports, "BaseDisplay", {
@@ -26,7 +26,7 @@ Object.defineProperty(exports, "BaseInternetAccountConfig", {
 Object.defineProperty(exports, "BaseViewModel", {
   enumerable: true,
   get: function get() {
-    return _BaseViewModel.default;
+    return _BaseViewModel["default"];
   }
 });
 Object.defineProperty(exports, "InternetAccount", {
@@ -38,7 +38,7 @@ Object.defineProperty(exports, "InternetAccount", {
 Object.defineProperty(exports, "baseConnectionConfig", {
   enumerable: true,
   get: function get() {
-    return _baseConnectionConfig.default;
+    return _baseConnectionConfig["default"];
   }
 });
 Object.defineProperty(exports, "createBaseTrackConfig", {