@jbrowse/core 1.5.4 → 1.5.8

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Files changed (139) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.js +78 -91
  2. package/BaseFeatureWidget/SequenceFeatureDetails.js +57 -65
  3. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  4. package/BaseFeatureWidget/index.js +1 -1
  5. package/BaseFeatureWidget/index.test.js +3 -3
  6. package/BaseFeatureWidget/types.js +5 -1
  7. package/BaseFeatureWidget/util.js +9 -13
  8. package/CorePlugin.js +19 -31
  9. package/Plugin.js +11 -13
  10. package/PluginLoader.js +33 -38
  11. package/PluginManager.js +55 -56
  12. package/ReExports/index.js +4 -4
  13. package/ReExports/list.js +2 -2
  14. package/ReExports/material-ui-colors.js +20 -20
  15. package/ReExports/modules.js +47 -51
  16. package/TextSearch/BaseResults.js +24 -34
  17. package/TextSearch/BaseResults.test.js +3 -7
  18. package/TextSearch/TextSearchManager.js +16 -17
  19. package/assemblyManager/assembly.js +34 -39
  20. package/assemblyManager/assemblyConfigSchema.js +2 -2
  21. package/assemblyManager/assemblyManager.js +16 -20
  22. package/assemblyManager/index.js +3 -3
  23. package/configuration/configurationSchema.js +17 -19
  24. package/configuration/configurationSlot.js +11 -11
  25. package/configuration/configurationSlot.test.js +5 -5
  26. package/configuration/util.js +5 -5
  27. package/data_adapters/BaseAdapter.js +38 -40
  28. package/data_adapters/BaseAdapter.test.js +24 -30
  29. package/data_adapters/CytobandAdapter.js +16 -22
  30. package/data_adapters/dataAdapterCache.js +9 -9
  31. package/package.json +3 -4
  32. package/pluggableElementTypes/AdapterType.js +22 -31
  33. package/pluggableElementTypes/ConnectionType.js +18 -28
  34. package/pluggableElementTypes/DisplayType.js +17 -27
  35. package/pluggableElementTypes/InternetAccountType.js +14 -24
  36. package/pluggableElementTypes/PluggableElementBase.js +8 -10
  37. package/pluggableElementTypes/RpcMethodType.js +41 -55
  38. package/pluggableElementTypes/RpcMethodType.test.js +17 -23
  39. package/pluggableElementTypes/TextSearchAdapterType.js +15 -25
  40. package/pluggableElementTypes/TrackType.js +15 -25
  41. package/pluggableElementTypes/ViewType.js +15 -25
  42. package/pluggableElementTypes/WidgetType.js +17 -27
  43. package/pluggableElementTypes/index.js +11 -11
  44. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  45. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  46. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  47. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  48. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  49. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  50. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  51. package/pluggableElementTypes/models/index.js +4 -4
  52. package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
  53. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -18
  54. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
  55. package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
  56. package/pluggableElementTypes/renderers/RendererType.js +21 -31
  57. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  58. package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
  59. package/pluggableElementTypes/renderers/index.js +8 -8
  60. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  61. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  62. package/rpc/BaseRpcDriver.js +38 -41
  63. package/rpc/BaseRpcDriver.test.js +49 -63
  64. package/rpc/MainThreadRpcDriver.js +22 -32
  65. package/rpc/RpcManager.js +20 -19
  66. package/rpc/WebWorkerRpcDriver.js +29 -38
  67. package/rpc/configSchema.js +2 -2
  68. package/rpc/coreRpcMethods.js +72 -82
  69. package/rpc/remoteAbortSignals.js +3 -3
  70. package/ui/AboutDialog.js +17 -21
  71. package/ui/App.js +38 -42
  72. package/ui/AssemblySelector.js +5 -5
  73. package/ui/Drawer.js +7 -7
  74. package/ui/DrawerWidget.js +33 -37
  75. package/ui/DropDownMenu.js +9 -21
  76. package/ui/EditableTypography.js +19 -30
  77. package/ui/ErrorMessage.js +5 -5
  78. package/ui/FactoryResetDialog.js +8 -8
  79. package/ui/FatalErrorDialog.js +12 -29
  80. package/ui/FatalErrorDialog.test.js +11 -11
  81. package/ui/FileSelector/FileSelector.js +32 -42
  82. package/ui/FileSelector/LocalFileChooser.js +9 -9
  83. package/ui/FileSelector/UrlChooser.js +4 -4
  84. package/ui/FileSelector/index.js +4 -4
  85. package/ui/Icons.js +9 -9
  86. package/ui/Logo.js +19 -19
  87. package/ui/Menu.js +35 -46
  88. package/ui/NewSessionCards.js +19 -29
  89. package/ui/PrerenderedCanvas.js +10 -27
  90. package/ui/ResizeHandle.js +10 -17
  91. package/ui/SanitizedHTML.js +5 -5
  92. package/ui/SanitizedHTML.test.js +4 -4
  93. package/ui/Snackbar.js +12 -16
  94. package/ui/SnackbarModel.js +1 -1
  95. package/ui/Tooltip.js +7 -11
  96. package/ui/ViewContainer.js +20 -30
  97. package/ui/index.js +13 -17
  98. package/ui/theme.js +11 -15
  99. package/util/Base1DViewModel.js +10 -14
  100. package/util/Base1DViewModel.test.js +5 -5
  101. package/util/QuickLRU.js +27 -31
  102. package/util/aborting.js +16 -26
  103. package/util/analytics.js +7 -7
  104. package/util/blockTypes.js +39 -49
  105. package/util/calculateDynamicBlocks.js +4 -4
  106. package/util/calculateDynamicBlocks.test.js +10 -14
  107. package/util/calculateStaticBlocks.js +1 -1
  108. package/util/calculateStaticBlocks.test.js +15 -15
  109. package/util/compositeMap.js +28 -31
  110. package/util/idMaker.js +4 -4
  111. package/util/index.js +35 -48
  112. package/util/index.test.js +7 -11
  113. package/util/io/RemoteFileWithRangeCache.js +29 -41
  114. package/util/io/index.js +6 -6
  115. package/util/jexl.js +8 -5
  116. package/util/jexlStrings.js +2 -2
  117. package/util/jexlStrings.test.js +2 -2
  118. package/util/layouts/BaseLayout.js +5 -1
  119. package/util/layouts/GranularRectLayout.js +27 -33
  120. package/util/layouts/GranularRectLayout.test.js +10 -10
  121. package/util/layouts/MultiLayout.js +14 -19
  122. package/util/layouts/PrecomputedLayout.js +14 -16
  123. package/util/layouts/PrecomputedMultiLayout.js +17 -23
  124. package/util/layouts/SceneGraph.js +18 -18
  125. package/util/layouts/index.js +6 -6
  126. package/util/offscreenCanvasPonyfill.js +29 -31
  127. package/util/offscreenCanvasUtils.js +6 -6
  128. package/util/range.test.js +20 -20
  129. package/util/rxjs.js +2 -2
  130. package/util/simpleFeature.js +19 -24
  131. package/util/simpleFeature.test.js +3 -3
  132. package/util/stats.js +7 -11
  133. package/util/stats.test.js +15 -15
  134. package/util/types/index.js +32 -34
  135. package/util/types/mst.js +15 -19
  136. package/util/types/util.js +5 -1
  137. package/util/when.js +6 -6
  138. package/babel.config.d.ts +0 -15
  139. package/babel.config.js +0 -19
@@ -1,35 +1,32 @@
1
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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- exports.default = void 0;
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+ exports["default"] = void 0;
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- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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+ var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
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-
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- function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
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-
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- function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
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+ var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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  // takes an array or Map or Set (anything iterable with values()) of Maps
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  // and lets you query them as one Map
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  var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  function CompositeMap(submaps) {
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- (0, _classCallCheck2.default)(this, CompositeMap);
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+ (0, _classCallCheck2["default"])(this, CompositeMap);
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+ this.submaps = submaps;
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  }
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- (0, _createClass2.default)(CompositeMap, [{
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+ (0, _createClass2["default"])(CompositeMap, [{
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  key: "has",
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  value: function has(id) {
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- var _iterator = _createForOfIteratorHelper(this.submaps.values()),
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+ var _iterator = (0, _createForOfIteratorHelper2["default"])(this.submaps.values()),
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  _step;
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  try {
@@ -51,7 +48,7 @@ var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  }, {
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  key: "get",
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  value: function get(id) {
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- var _iterator2 = _createForOfIteratorHelper(this.submaps.values()),
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+ var _iterator2 = (0, _createForOfIteratorHelper2["default"])(this.submaps.values()),
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  _step2;
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  try {
@@ -72,14 +69,14 @@ var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  }
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  }, {
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  key: "values",
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- value: /*#__PURE__*/_regenerator.default.mark(function values() {
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+ value: /*#__PURE__*/_index["default"].mark(function values() {
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  var _iterator3, _step3, key;
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- return _regenerator.default.wrap(function values$(_context) {
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+ return _index["default"].wrap(function values$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
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- _iterator3 = _createForOfIteratorHelper(this.keys());
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+ _iterator3 = (0, _createForOfIteratorHelper2["default"])(this.keys());
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  _context.prev = 1;
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  _iterator3.s();
@@ -124,20 +121,20 @@ var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  })
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  }, {
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  key: "keys",
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- value: /*#__PURE__*/_regenerator.default.mark(function keys() {
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+ value: /*#__PURE__*/_index["default"].mark(function keys() {
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  var keys, _iterator4, _step4, submap, _iterator6, _step6, key, _iterator5, _step5, _key;
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- return _regenerator.default.wrap(function keys$(_context2) {
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+ return _index["default"].wrap(function keys$(_context2) {
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  while (1) {
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  switch (_context2.prev = _context2.next) {
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  case 0:
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  keys = new Set();
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- _iterator4 = _createForOfIteratorHelper(this.submaps.values());
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+ _iterator4 = (0, _createForOfIteratorHelper2["default"])(this.submaps.values());
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  try {
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  for (_iterator4.s(); !(_step4 = _iterator4.n()).done;) {
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  submap = _step4.value;
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+ _iterator6 = (0, _createForOfIteratorHelper2["default"])(submap.keys());
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@@ -156,7 +153,7 @@ var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  }
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- _iterator5 = _createForOfIteratorHelper(keys);
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+ _iterator5 = (0, _createForOfIteratorHelper2["default"])(keys);
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@@ -202,14 +199,14 @@ var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  key: "find",
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- var _iterator7 = _createForOfIteratorHelper(this.submaps.values()),
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+ var _iterator7 = (0, _createForOfIteratorHelper2["default"])(this.submaps.values()),
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  _step7;
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+ var _iterator8 = (0, _createForOfIteratorHelper2["default"])(submap.values()),
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  _step8;
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@@ -237,14 +234,14 @@ var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  }
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  }, {
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  key: _Symbol$iterator,
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- value: /*#__PURE__*/_regenerator.default.mark(function value() {
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+ value: /*#__PURE__*/_index["default"].mark(function value() {
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  var _iterator9, _step9, key;
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+ return _index["default"].wrap(function value$(_context3) {
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  while (1) {
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  switch (_context3.prev = _context3.next) {
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  case 0:
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- _iterator9 = _createForOfIteratorHelper(this.keys());
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+ _iterator9 = (0, _createForOfIteratorHelper2["default"])(this.keys());
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  _context3.prev = 1;
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@@ -289,14 +286,14 @@ var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  key: "entries",
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- value: /*#__PURE__*/_regenerator.default.mark(function entries() {
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+ value: /*#__PURE__*/_index["default"].mark(function entries() {
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+ return _index["default"].wrap(function entries$(_context4) {
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  while (1) {
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  switch (_context4.prev = _context4.next) {
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  case 0:
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+ _iterator10 = (0, _createForOfIteratorHelper2["default"])(this.keys());
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  _context4.prev = 1;
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@@ -343,4 +340,4 @@ var CompositeMap = /*#__PURE__*/function (_Symbol$iterator) {
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  }(Symbol.iterator);
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+ exports["default"] = CompositeMap;
package/util/idMaker.js CHANGED
@@ -1,13 +1,13 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  value: true
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+ exports["default"] = idMaker;
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+ var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
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@@ -26,7 +26,7 @@ function idMaker(args) {
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- if ((0, _typeof2.default)(args[key]) === 'object' && args[key]) {
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+ if ((0, _typeof2["default"])(args[key]) === 'object' && args[key]) {
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  id += idMaker(args[key], id);
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package/util/index.js CHANGED
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@@ -60,7 +60,7 @@ var _exportNames = {
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@@ -111,17 +111,19 @@ exports.updateStatus = updateStatus;
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+ var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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- var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
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+ var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
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+ var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
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+ var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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@@ -219,33 +221,20 @@ Object.keys(_offscreenCanvasUtils).forEach(function (key) {
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  });
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- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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-
224
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof3(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
225
-
226
- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
227
-
228
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
229
-
230
- function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
231
-
232
- function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
233
-
234
- function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
235
-
224
+ /* eslint-disable @typescript-eslint/no-explicit-any */
236
225
  if (!Object.fromEntries) {
237
226
  // @ts-ignore
238
- _object.default.shim();
227
+ _object["default"].shim();
239
228
  }
240
229
 
241
- var inDevelopment = (typeof process === "undefined" ? "undefined" : (0, _typeof2.default)(process)) === 'object' && process.env && process.env.NODE_ENV === 'development';
230
+ var inDevelopment = (typeof process === "undefined" ? "undefined" : (0, _typeof2["default"])(process)) === 'object' && process.env && process.env.NODE_ENV === 'development';
242
231
  exports.inDevelopment = inDevelopment;
243
232
  var inProduction = !inDevelopment;
244
233
  exports.inProduction = inProduction;
245
234
 
246
235
  function useDebounce(value, delay) {
247
236
  var _useState = (0, _react.useState)(value),
248
- _useState2 = (0, _slicedToArray2.default)(_useState, 2),
237
+ _useState2 = (0, _slicedToArray2["default"])(_useState, 2),
249
238
  debouncedValue = _useState2[0],
250
239
  setDebouncedValue = _useState2[1];
251
240
 
@@ -289,7 +278,7 @@ function useDebouncedCallback(callback) {
289
278
 
290
279
  timeout.current = setTimeout(function () {
291
280
  if (argsRef.current) {
292
- callback.apply(void 0, (0, _toConsumableArray2.default)(argsRef.current));
281
+ callback.apply(void 0, (0, _toConsumableArray2["default"])(argsRef.current));
293
282
  }
294
283
  }, wait);
295
284
  };
@@ -503,7 +492,7 @@ function parseLocStringOneBased(locString, isValidRefName) {
503
492
  throw new Error("invalid location string: \"".concat(locString, "\""));
504
493
  }
505
494
 
506
- var _assemblyMatch = (0, _slicedToArray2.default)(assemblyMatch, 4),
495
+ var _assemblyMatch = (0, _slicedToArray2["default"])(assemblyMatch, 4),
507
496
  assemblyName = _assemblyMatch[2],
508
497
  location = _assemblyMatch[3];
509
498
 
@@ -537,7 +526,7 @@ function parseLocStringOneBased(locString, isValidRefName) {
537
526
  var singleMatch = suffix.match(/^(-?(\d+|\d{1,3}(,\d{3})*))(\.\.|-)?$/);
538
527
 
539
528
  if (rangeMatch) {
540
- var _rangeMatch = (0, _slicedToArray2.default)(rangeMatch, 6),
529
+ var _rangeMatch = (0, _slicedToArray2["default"])(rangeMatch, 6),
541
530
  start = _rangeMatch[1],
542
531
  end = _rangeMatch[5];
543
532
 
@@ -550,7 +539,7 @@ function parseLocStringOneBased(locString, isValidRefName) {
550
539
  };
551
540
  }
552
541
  } else if (singleMatch) {
553
- var _singleMatch = (0, _slicedToArray2.default)(singleMatch, 5),
542
+ var _singleMatch = (0, _slicedToArray2["default"])(singleMatch, 5),
554
543
  _start = _singleMatch[1],
555
544
  separator = _singleMatch[4];
556
545
 
@@ -763,7 +752,7 @@ function iterMap(iterable, func, sizeHint) {
763
752
  var results = sizeHint ? new Array(sizeHint) : [];
764
753
  var counter = 0;
765
754
 
766
- var _iterator = _createForOfIteratorHelper(iterable),
755
+ var _iterator = (0, _createForOfIteratorHelper2["default"])(iterable),
767
756
  _step;
768
757
 
769
758
  try {
@@ -783,7 +772,7 @@ function iterMap(iterable, func, sizeHint) {
783
772
 
784
773
  // similar to electron.js
785
774
  function mergeConfigs(A, B) {
786
- var merged = (0, _deepmerge.default)(A, B);
775
+ var merged = (0, _deepmerge["default"])(A, B);
787
776
 
788
777
  if (B.defaultSession) {
789
778
  merged.defaultSession = B.defaultSession;
@@ -856,9 +845,9 @@ function makeAbortableReaction(self, dataFunction, asyncReactionFunction, reacti
856
845
  return undefined;
857
846
  }
858
847
  }, /*#__PURE__*/function () {
859
- var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(data, mobxReactionHandle) {
848
+ var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(data, mobxReactionHandle) {
860
849
  var thisInProgress, result;
861
- return _regenerator.default.wrap(function _callee$(_context) {
850
+ return _index["default"].wrap(function _callee$(_context) {
862
851
  while (1) {
863
852
  switch (_context.prev = _context.next) {
864
853
  case 0:
@@ -930,16 +919,16 @@ function renameRegionIfNeeded(refNameMap, region) {
930
919
  if (region && refNameMap && refNameMap[region.refName]) {
931
920
  // clone the region so we don't modify it
932
921
  if ((0, _mobxStateTree.isStateTreeNode)(region)) {
933
- region = _objectSpread({}, (0, _mobxStateTree.getSnapshot)(region));
922
+ region = (0, _objectSpread2["default"])({}, (0, _mobxStateTree.getSnapshot)(region));
934
923
  } else {
935
- region = _objectSpread({}, region);
924
+ region = (0, _objectSpread2["default"])({}, region);
936
925
  } // modify it directly in the container
937
926
 
938
927
 
939
928
  var newRef = refNameMap[region.refName];
940
929
 
941
930
  if (newRef) {
942
- return _objectSpread(_objectSpread({}, region), {}, {
931
+ return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, region), {}, {
943
932
  refName: newRef,
944
933
  originalRefName: region.refName
945
934
  });
@@ -954,10 +943,10 @@ function renameRegionsIfNeeded(_x3, _x4) {
954
943
  }
955
944
 
956
945
  function _renameRegionsIfNeeded() {
957
- _renameRegionsIfNeeded = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(assemblyManager, args) {
946
+ _renameRegionsIfNeeded = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3(assemblyManager, args) {
958
947
  var _args$regions, regions, adapterConfig, assemblyNames, assemblyMaps;
959
948
 
960
- return _regenerator.default.wrap(function _callee3$(_context3) {
949
+ return _index["default"].wrap(function _callee3$(_context3) {
961
950
  while (1) {
962
951
  switch (_context3.prev = _context3.next) {
963
952
  case 0:
@@ -977,8 +966,8 @@ function _renameRegionsIfNeeded() {
977
966
  _context3.t0 = Object;
978
967
  _context3.next = 7;
979
968
  return Promise.all(assemblyNames.map( /*#__PURE__*/function () {
980
- var _ref3 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(assemblyName) {
981
- return _regenerator.default.wrap(function _callee2$(_context2) {
969
+ var _ref3 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(assemblyName) {
970
+ return _index["default"].wrap(function _callee2$(_context2) {
982
971
  while (1) {
983
972
  switch (_context2.prev = _context2.next) {
984
973
  case 0:
@@ -1006,7 +995,7 @@ function _renameRegionsIfNeeded() {
1006
995
  case 7:
1007
996
  _context3.t1 = _context3.sent;
1008
997
  assemblyMaps = _context3.t0.fromEntries.call(_context3.t0, _context3.t1);
1009
- return _context3.abrupt("return", _objectSpread(_objectSpread({}, args), {}, {
998
+ return _context3.abrupt("return", (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, args), {}, {
1010
999
  regions: regions.map(function (region) {
1011
1000
  return renameRegionIfNeeded(assemblyMaps[region.assemblyName], region);
1012
1001
  })
@@ -1247,9 +1236,9 @@ function updateStatus(_x5, _x6, _x7) {
1247
1236
  }
1248
1237
 
1249
1238
  function _updateStatus() {
1250
- _updateStatus = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(statusMsg, statusCallback, fn) {
1239
+ _updateStatus = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee4(statusMsg, statusCallback, fn) {
1251
1240
  var result;
1252
- return _regenerator.default.wrap(function _callee4$(_context4) {
1241
+ return _index["default"].wrap(function _callee4$(_context4) {
1253
1242
  while (1) {
1254
1243
  switch (_context4.prev = _context4.next) {
1255
1244
  case 0:
@@ -1274,15 +1263,13 @@ function _updateStatus() {
1274
1263
 
1275
1264
  function hashCode(str) {
1276
1265
  var hash = 0;
1277
- var i;
1278
- var chr;
1279
1266
 
1280
1267
  if (str.length === 0) {
1281
1268
  return hash;
1282
1269
  }
1283
1270
 
1284
- for (i = 0; i < str.length; i++) {
1285
- chr = str.charCodeAt(i);
1271
+ for (var i = 0; i < str.length; i++) {
1272
+ var chr = str.charCodeAt(i);
1286
1273
  hash = (hash << 5) - hash + chr;
1287
1274
  hash |= 0; // Convert to 32bit integer
1288
1275
  }
@@ -1,17 +1,13 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
5
+ var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
6
6
 
7
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
7
+ var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
8
8
 
9
9
  var _index = require("./index");
10
10
 
11
- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
12
-
13
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
14
-
15
11
  describe('parseLocString', function () {
16
12
  var cases = [['chr1:1..200', {
17
13
  start: 0,
@@ -70,7 +66,7 @@ describe('parseLocString', function () {
70
66
  refName: 'chr1'
71
67
  }]];
72
68
  cases.forEach(function (_ref) {
73
- var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
69
+ var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
74
70
  input = _ref2[0],
75
71
  output = _ref2[1];
76
72
 
@@ -118,7 +114,7 @@ describe('assembleLocString', function () {
118
114
  refName: 'chr1'
119
115
  }, 'chr1:-99..-1']];
120
116
  cases.forEach(function (_ref3) {
121
- var _ref4 = (0, _slicedToArray2.default)(_ref3, 2),
117
+ var _ref4 = (0, _slicedToArray2["default"])(_ref3, 2),
122
118
  input = _ref4[0],
123
119
  output = _ref4[1];
124
120
 
@@ -151,7 +147,7 @@ describe('assembleLocString', function () {
151
147
  test("assemble and parse 'chr1:1..100'", function () {
152
148
  expect((0, _index.parseLocString)((0, _index.assembleLocString)(location), function (refName) {
153
149
  return refName === 'chr1' || refName === 'chr2';
154
- })).toEqual(_objectSpread(_objectSpread({}, location), {}, {
150
+ })).toEqual((0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, location), {}, {
155
151
  start: 0
156
152
  }));
157
153
  });
@@ -159,7 +155,7 @@ describe('assembleLocString', function () {
159
155
  describe('compareLocStrings', function () {
160
156
  var cases = [['chr1:1..200', 'chr1:1-200', 0], ['chr1:1-200', '{hg19}chr1:1-200', -1], ['{hg19}chr1:1-200', 'chr1:1-200', 1], ['{hg19}chr1:1-200', '{hg19}chr1:2-200', -1]];
161
157
  cases.forEach(function (_ref5) {
162
- var _ref6 = (0, _slicedToArray2.default)(_ref5, 3),
158
+ var _ref6 = (0, _slicedToArray2["default"])(_ref5, 3),
163
159
  input1 = _ref6[0],
164
160
  input2 = _ref6[1],
165
161
  output = _ref6[2];