@jbrowse/core 1.5.4 → 1.5.8

package/assemblyManager/assemblyManager.js

@@ -1,17 +1,19 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = assemblyManagerFactory;
+exports["default"] = assemblyManagerFactory;
 
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
+var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
+var _createForOfIteratorHelper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createForOfIteratorHelper.js"));
+
+var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
 
 var _mobx = require("mobx");
 
@@ -23,14 +25,8 @@ var _configuration = require("../configuration");
 
 var _assembly = _interopRequireDefault(require("./assembly"));
 
-function _createForOfIteratorHelper(o, allowArrayLike) { var it = typeof Symbol !== "undefined" && o[Symbol.iterator] || o["@@iterator"]; if (!it) { if (Array.isArray(o) || (it = _unsupportedIterableToArray(o)) || allowArrayLike && o && typeof o.length === "number") { if (it) o = it; var i = 0; var F = function F() {}; return { s: F, n: function n() { if (i >= o.length) return { done: true }; return { done: false, value: o[i++] }; }, e: function e(_e) { throw _e; }, f: F }; } throw new TypeError("Invalid attempt to iterate non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); } var normalCompletion = true, didErr = false, err; return { s: function s() { it = it.call(o); }, n: function n() { var step = it.next(); normalCompletion = step.done; return step; }, e: function e(_e2) { didErr = true; err = _e2; }, f: function f() { try { if (!normalCompletion && it.return != null) it.return(); } finally { if (didErr) throw err; } } }; }
-
-function _unsupportedIterableToArray(o, minLen) { if (!o) return; if (typeof o === "string") return _arrayLikeToArray(o, minLen); var n = Object.prototype.toString.call(o).slice(8, -1); if (n === "Object" && o.constructor) n = o.constructor.name; if (n === "Map" || n === "Set") return Array.from(o); if (n === "Arguments" || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(n)) return _arrayLikeToArray(o, minLen); }
-
-function _arrayLikeToArray(arr, len) { if (len == null || len > arr.length) len = arr.length; for (var i = 0, arr2 = new Array(len); i < len; i++) { arr2[i] = arr[i]; } return arr2; }
-
 function assemblyManagerFactory(assemblyConfigType, pluginManager) {
-  var Assembly = (0, _assembly.default)(assemblyConfigType, pluginManager);
+  var Assembly = (0, _assembly["default"])(assemblyConfigType, pluginManager);
   return _mobxStateTree.types.model({
     assemblies: _mobxStateTree.types.array(Assembly)
   }).views(function (self) {
@@ -57,7 +53,7 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
         _getParent$session = _getParent$session === void 0 ? {} : _getParent$session;
         var _getParent$session$se = _getParent$session.sessionAssemblies,
             sessionAssemblies = _getParent$session$se === void 0 ? [] : _getParent$session$se;
-        return [].concat((0, _toConsumableArray2.default)(assemblies), (0, _toConsumableArray2.default)(sessionAssemblies));
+        return [].concat((0, _toConsumableArray2["default"])(assemblies), (0, _toConsumableArray2["default"])(sessionAssemblies));
       },
 
       get rpcManager() {
@@ -71,7 +67,7 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
       get allPossibleRefNames() {
         var refNames = [];
 
-        var _iterator = _createForOfIteratorHelper(self.assemblies),
+        var _iterator = (0, _createForOfIteratorHelper2["default"])(self.assemblies),
             _step;
 
         try {
@@ -99,9 +95,9 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
       // use this method instead of assemblyManager.get(assemblyName)
       // get an assembly with regions loaded
       waitForAssembly: function waitForAssembly(assemblyName) {
-        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
+        return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee() {
           var assembly;
-          return _regenerator.default.wrap(function _callee$(_context) {
+          return _index["default"].wrap(function _callee$(_context) {
             while (1) {
               switch (_context.prev = _context.next) {
                 case 0:
@@ -148,9 +144,9 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
         }))();
       },
       getRefNameMapForAdapter: function getRefNameMapForAdapter(adapterConf, assemblyName, opts) {
-        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
+        return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2() {
           var assembly;
-          return _regenerator.default.wrap(function _callee2$(_context2) {
+          return _index["default"].wrap(function _callee2$(_context2) {
             while (1) {
               switch (_context2.prev = _context2.next) {
                 case 0:
@@ -184,9 +180,9 @@ function assemblyManagerFactory(assemblyConfigType, pluginManager) {
         }))();
       },
       getReverseRefNameMapForAdapter: function getReverseRefNameMapForAdapter(adapterConf, assemblyName, opts) {
-        return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
+        return (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3() {
           var assembly;
-          return _regenerator.default.wrap(function _callee3$(_context3) {
+          return _index["default"].wrap(function _callee3$(_context3) {
             while (1) {
               switch (_context3.prev = _context3.next) {
                 case 0:

package/assemblyManager/index.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "assemblyConfigSchemaFactory", {
   enumerable: true,
   get: function get() {
-    return _assemblyConfigSchema.default;
+    return _assemblyConfigSchema["default"];
   }
 });
 Object.defineProperty(exports, "default", {
   enumerable: true,
   get: function get() {
-    return _assemblyManager.default;
+    return _assemblyManager["default"];
   }
 });
 

package/configuration/configurationSchema.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -8,11 +8,13 @@ Object.defineProperty(exports, "__esModule", {
 exports.ConfigurationReference = ConfigurationReference;
 exports.ConfigurationSchema = ConfigurationSchema;
 
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
+var _defineProperty2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/defineProperty.js"));
 
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+var _slicedToArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
 
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
+var _objectSpread2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
+
+var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -22,12 +24,8 @@ var _configurationSlot = _interopRequireDefault(require("./configurationSlot"));
 
 var _util = require("./util");
 
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
 function isEmptyObject(thing) {
-  return (0, _typeof2.default)(thing) === 'object' && !Array.isArray(thing) && thing !== null && Object.keys(thing).length === 0;
+  return (0, _typeof2["default"])(thing) === 'object' && !Array.isArray(thing) && thing !== null && Object.keys(thing).length === 0;
 }
 
 function isEmptyArray(thing) {
@@ -47,8 +45,8 @@ function preprocessConfigurationSchemaArguments(modelName, inputSchemaDefinition
   var options = inputOptions;
 
   if (inputOptions.baseConfiguration && inputOptions.baseConfiguration.jbrowseSchemaDefinition) {
-    schemaDefinition = _objectSpread(_objectSpread({}, inputOptions.baseConfiguration.jbrowseSchemaDefinition), schemaDefinition);
-    options = _objectSpread(_objectSpread({}, inputOptions.baseConfiguration.jbrowseSchemaOptions || {}), inputOptions);
+    schemaDefinition = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, inputOptions.baseConfiguration.jbrowseSchemaDefinition), schemaDefinition);
+    options = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, inputOptions.baseConfiguration.jbrowseSchemaOptions || {}), inputOptions);
     delete options.baseConfiguration;
   }
 
@@ -100,7 +98,7 @@ function makeConfigurationSchemaModel(modelName, schemaDefinition, options) {
     }
   };
   Object.entries(schemaDefinition).forEach(function (_ref) {
-    var _ref2 = (0, _slicedToArray2.default)(_ref, 2),
+    var _ref2 = (0, _slicedToArray2["default"])(_ref, 2),
         slotName = _ref2[0],
         slotDefinition = _ref2[1];
 
@@ -110,14 +108,14 @@ function makeConfigurationSchemaModel(modelName, schemaDefinition, options) {
       modelDefinition[slotName] = slotDefinition;
     } else if (typeof slotDefinition === 'string' || typeof slotDefinition === 'number') {
       volatileConstants[slotName] = slotDefinition;
-    } else if ((0, _typeof2.default)(slotDefinition) === 'object') {
+    } else if ((0, _typeof2["default"])(slotDefinition) === 'object') {
       // this is a slot definition
       if (!slotDefinition.type) {
         throw new Error("no type set for config slot ".concat(modelName, ".").concat(slotName));
       }
 
       try {
-        modelDefinition[slotName] = (0, _configurationSlot.default)(slotName, slotDefinition);
+        modelDefinition[slotName] = (0, _configurationSlot["default"])(slotName, slotDefinition);
       } catch (e) {
         throw new Error("invalid config slot definition for ".concat(modelName, ".").concat(slotName, ": ").concat(e));
       }
@@ -141,7 +139,7 @@ function makeConfigurationSchemaModel(modelName, schemaDefinition, options) {
   });
 
   if (Object.keys(volatileConstants).length) {
-    completeModel = completeModel.volatile(function
+    completeModel = completeModel["volatile"](function
       /* self */
     () {
       return volatileConstants;
@@ -160,8 +158,8 @@ function makeConfigurationSchemaModel(modelName, schemaDefinition, options) {
     completeModel = completeModel.extend(options.extend);
   }
 
-  var identifierDefault = identifier ? (0, _defineProperty2.default)({}, identifier, 'placeholderId') : {};
-  var modelDefault = options.explicitlyTyped ? _objectSpread({
+  var identifierDefault = identifier ? (0, _defineProperty2["default"])({}, identifier, 'placeholderId') : {};
+  var modelDefault = options.explicitlyTyped ? (0, _objectSpread2["default"])({
     type: modelName
   }, identifierDefault) : identifierDefault;
   var defaultSnap = (0, _mobxStateTree.getSnapshot)(completeModel.create(modelDefault));
@@ -170,12 +168,12 @@ function makeConfigurationSchemaModel(modelName, schemaDefinition, options) {
     var matchesDefault = true; // let keyCount = 0
 
     for (var _i = 0, _Object$entries = Object.entries(snap); _i < _Object$entries.length; _i++) {
-      var _Object$entries$_i = (0, _slicedToArray2.default)(_Object$entries[_i], 2),
+      var _Object$entries$_i = (0, _slicedToArray2["default"])(_Object$entries[_i], 2),
           key = _Object$entries$_i[0],
           value = _Object$entries$_i[1];
 
       if (matchesDefault) {
-        if ((0, _typeof2.default)(defaultSnap[key]) === 'object' && (0, _typeof2.default)(value) === 'object') {
+        if ((0, _typeof2["default"])(defaultSnap[key]) === 'object' && (0, _typeof2["default"])(value) === 'object') {
           if (JSON.stringify(defaultSnap[key]) !== JSON.stringify(value)) {
             matchesDefault = false;
           }

package/configuration/configurationSlot.js

@@ -1,13 +1,13 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports.default = ConfigSlot;
+exports["default"] = ConfigSlot;
 
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
+var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -27,7 +27,7 @@ var typeModels = {
   stringArray: _mobxStateTree.types.array(_mobxStateTree.types.string),
   stringArrayMap: _mobxStateTree.types.map(_mobxStateTree.types.array(_mobxStateTree.types.string)),
   numberMap: _mobxStateTree.types.map(_mobxStateTree.types.number),
-  boolean: _mobxStateTree.types.boolean,
+  "boolean": _mobxStateTree.types["boolean"],
   color: _mobxStateTree.types.refinement('Color', _mobxStateTree.types.string, isValidColorString),
   integer: _mobxStateTree.types.integer,
   number: _mobxStateTree.types.number,
@@ -41,7 +41,7 @@ var fallbackDefaults = {
   stringArray: [],
   stringArrayMap: {},
   numberMap: {},
-  boolean: true,
+  "boolean": true,
   color: 'black',
   integer: 1,
   number: 1,
@@ -81,7 +81,7 @@ var typeModelExtensions = {
   fileLocation: objectJSON,
   number: literalJSON,
   integer: literalJSON,
-  boolean: literalJSON,
+  "boolean": literalJSON,
   frozen: objectJSON,
   // special actions for working with stringArray slots
   stringArray: function stringArray(self) {
@@ -118,7 +118,7 @@ var typeModelExtensions = {
           self.value.set(key, val);
         },
         remove: function remove(key) {
-          self.value.delete(key);
+          self.value["delete"](key);
         },
         addToKey: function addToKey(key, val) {
           var ar = self.value.get(key);
@@ -163,7 +163,7 @@ var typeModelExtensions = {
           self.value.set(key, val);
         },
         remove: function remove(key) {
-          self.value.delete(key);
+          self.value["delete"](key);
         }
       }
     };
@@ -218,7 +218,7 @@ function ConfigSlot(slotName, _ref) {
     description: _mobxStateTree.types.literal(description),
     type: _mobxStateTree.types.literal(type),
     value: _mobxStateTree.types.optional(_mobxStateTree.types.union(JexlStringType, model), defaultValue)
-  }).volatile(function () {
+  })["volatile"](function () {
     return {
       contextVariable: contextVariable
     };
@@ -272,14 +272,14 @@ function ConfigSlot(slotName, _ref) {
 
     };
   }).preProcessSnapshot(function (val) {
-    return (0, _typeof2.default)(val) === 'object' && val.name === slotName ? val : {
+    return (0, _typeof2["default"])(val) === 'object' && val.name === slotName ? val : {
       name: slotName,
       description: description,
       type: type,
       value: val
     };
   }).postProcessSnapshot(function (snap) {
-    if ((0, _typeof2.default)(snap.value) === 'object') {
+    if ((0, _typeof2["default"])(snap.value) === 'object') {
       return JSON.stringify(snap.value) !== JSON.stringify(defaultValue) ? snap.value : undefined;
     }
 

package/configuration/configurationSlot.test.js

@@ -1,11 +1,11 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 var _configurationSlot = _interopRequireDefault(require("./configurationSlot"));
 
 test('can convert a string slot to and from a callback', function () {
-  var model = (0, _configurationSlot.default)('tester', {
+  var model = (0, _configurationSlot["default"])('tester', {
     type: 'string',
     defaultValue: 'foo'
   });
@@ -20,7 +20,7 @@ test('can convert a string slot to and from a callback', function () {
   expect(instance.expr.evalSync()).toBe('foo');
 });
 test('can convert a numeric slot to and from a callback', function () {
-  var model = (0, _configurationSlot.default)('tester', {
+  var model = (0, _configurationSlot["default"])('tester', {
     type: 'number',
     defaultValue: 12,
     contextVariable: ['something']
@@ -33,7 +33,7 @@ test('can convert a numeric slot to and from a callback', function () {
   expect(instance.expr.evalSync()).toBe(12);
 });
 test('can convert a stringArray slot to and from a callback', function () {
-  var model = (0, _configurationSlot.default)('tester', {
+  var model = (0, _configurationSlot["default"])('tester', {
     type: 'stringArray',
     defaultValue: ['foo', 'bar']
   });
@@ -48,7 +48,7 @@ test('can convert a stringArray slot to and from a callback', function () {
   expect(instance.value).toEqual(['foo', 'bar']);
 });
 test('can convert a slot with a default function value to a scalar value', function () {
-  var model = (0, _configurationSlot.default)('tester', {
+  var model = (0, _configurationSlot["default"])('tester', {
     type: 'string',
     defaultValue: 'jexl:get(feature,"foo")'
   });

package/configuration/util.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -13,9 +13,9 @@ exports.isConfigurationSchemaType = isConfigurationSchemaType;
 exports.isConfigurationSlotType = isConfigurationSlotType;
 exports.readConfObject = readConfObject;
 
-var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
+var _typeof2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/typeof.js"));
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
 
 var _mobxStateTree = require("mobx-state-tree");
 
@@ -154,7 +154,7 @@ function getTypeNamesFromExplicitlyTypedUnion(maybeUnionType) {
           throw new Error("invalid config schema type ".concat(type));
         }
 
-        typeNames.push.apply(typeNames, (0, _toConsumableArray2.default)(typeName));
+        typeNames.push.apply(typeNames, (0, _toConsumableArray2["default"])(typeName));
       });
       return typeNames;
     }
@@ -217,5 +217,5 @@ function isConfigurationModel(thing) {
 }
 
 function isConfigurationSlotType(thing) {
-  return (0, _typeof2.default)(thing) === 'object' && thing !== null && 'isJBrowseConfigurationSlot' in thing;
+  return (0, _typeof2["default"])(thing) === 'object' && thing !== null && 'isJBrowseConfigurationSlot' in thing;
 }

package/data_adapters/BaseAdapter.js

@@ -1,6 +1,6 @@
 "use strict";
 
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
+var _interopRequireDefault = require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
 
 Object.defineProperty(exports, "__esModule", {
   value: true
@@ -12,23 +12,19 @@ exports.isRegionsAdapter = isRegionsAdapter;
 exports.isSequenceAdapter = isSequenceAdapter;
 exports.isTextSearchAdapter = isTextSearchAdapter;
 
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
+var _index = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/regenerator/index.js"));
 
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
+var _toConsumableArray2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
 
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
+var _asyncToGenerator2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
 
-var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
+var _inherits2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/inherits.js"));
 
-var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
+var _createSuper2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
 
-var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
+var _createClass2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/createClass.js"));
 
-var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
-
-var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
+var _classCallCheck2 = _interopRequireDefault(require("/data/jbrowse-components2/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
 
 var _rxjs = require("rxjs");
 
@@ -46,19 +42,21 @@ var _stats = require("../util/stats");
 
 var _idMaker = _interopRequireDefault(require("../util/idMaker"));
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
-
-function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
-
-var BaseAdapter = /*#__PURE__*/(0, _createClass2.default)(function BaseAdapter(config = (0, _configurationSchema.ConfigurationSchema)('empty', {}).create(), getSubAdapter, pluginManager) {
-  (0, _classCallCheck2.default)(this, BaseAdapter);
-  (0, _defineProperty2.default)(this, "id", void 0);
+var BaseAdapter = /*#__PURE__*/(0, _createClass2["default"])(function BaseAdapter() {
+  var config = arguments.length > 0 && arguments[0] !== undefined ? arguments[0] : (0, _configurationSchema.ConfigurationSchema)('empty', {}).create();
+  var getSubAdapter = arguments.length > 1 ? arguments[1] : undefined;
+  var pluginManager = arguments.length > 2 ? arguments[2] : undefined;
+  (0, _classCallCheck2["default"])(this, BaseAdapter);
+  this.config = config;
+  this.getSubAdapter = getSubAdapter;
+  this.pluginManager = pluginManager;
+  this.id = void 0;
 
   // note: we use switch on jest here for more simple feature IDs
   // in test environment
   if (typeof jest === 'undefined') {
     var data = (0, _mobxStateTree.isStateTreeNode)(config) ? (0, _mobxStateTree.getSnapshot)(config) : config;
-    this.id = "".concat((0, _idMaker.default)(data));
+    this.id = "".concat((0, _idMaker["default"])(data));
   } else {
     this.id = 'test';
   }
@@ -75,19 +73,19 @@ var BaseAdapter = /*#__PURE__*/(0, _createClass2.default)(function BaseAdapter(c
  */
 
 exports.BaseAdapter = BaseAdapter;
-(0, _defineProperty2.default)(BaseAdapter, "capabilities", []);
+BaseAdapter.capabilities = [];
 
 var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
-  (0, _inherits2.default)(BaseFeatureDataAdapter, _BaseAdapter);
+  (0, _inherits2["default"])(BaseFeatureDataAdapter, _BaseAdapter);
 
-  var _super = _createSuper(BaseFeatureDataAdapter);
+  var _super = (0, _createSuper2["default"])(BaseFeatureDataAdapter);
 
   function BaseFeatureDataAdapter() {
-    (0, _classCallCheck2.default)(this, BaseFeatureDataAdapter);
+    (0, _classCallCheck2["default"])(this, BaseFeatureDataAdapter);
     return _super.apply(this, arguments);
   }
 
-  (0, _createClass2.default)(BaseFeatureDataAdapter, [{
+  (0, _createClass2["default"])(BaseFeatureDataAdapter, [{
     key: "getHeader",
     value: // public abstract getFeatures(
     //   region: Region,
@@ -110,8 +108,8 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
      * object
      */
     function () {
-      var _getHeader = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(_opts) {
-        return _regenerator.default.wrap(function _callee$(_context) {
+      var _getHeader = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(_opts) {
+        return _index["default"].wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -139,8 +137,8 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
   }, {
     key: "getMetadata",
     value: function () {
-      var _getMetadata = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(_opts) {
-        return _regenerator.default.wrap(function _callee2$(_context2) {
+      var _getMetadata = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(_opts) {
+        return _index["default"].wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -172,9 +170,9 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
 
       var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
       return (0, _rxjs2.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(observer) {
+        var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee3(observer) {
           var hasData;
-          return _regenerator.default.wrap(function _callee3$(_context3) {
+          return _index["default"].wrap(function _callee3$(_context3) {
             while (1) {
               switch (_context3.prev = _context3.next) {
                 case 0:
@@ -228,11 +226,11 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
 
       var opts = arguments.length > 1 && arguments[1] !== undefined ? arguments[1] : {};
 
-      var obs = _rxjs.merge.apply(void 0, (0, _toConsumableArray2.default)(regions.map(function (region) {
+      var obs = _rxjs.merge.apply(void 0, (0, _toConsumableArray2["default"])(regions.map(function (region) {
         return (0, _rxjs2.ObservableCreate)( /*#__PURE__*/function () {
-          var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(observer) {
+          var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee4(observer) {
             var hasData;
-            return _regenerator.default.wrap(function _callee4$(_context4) {
+            return _index["default"].wrap(function _callee4$(_context4) {
               while (1) {
                 switch (_context4.prev = _context4.next) {
                   case 0:
@@ -279,11 +277,11 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
   }, {
     key: "hasDataForRefName",
     value: function () {
-      var _hasDataForRefName = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee5(refName) {
+      var _hasDataForRefName = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee5(refName) {
         var opts,
             refNames,
             _args5 = arguments;
-        return _regenerator.default.wrap(function _callee5$(_context5) {
+        return _index["default"].wrap(function _callee5$(_context5) {
           while (1) {
             switch (_context5.prev = _context5.next) {
               case 0:
@@ -312,9 +310,9 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
   }, {
     key: "getRegionStats",
     value: function () {
-      var _getRegionStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee6(region, opts) {
+      var _getRegionStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee6(region, opts) {
         var feats;
-        return _regenerator.default.wrap(function _callee6$(_context6) {
+        return _index["default"].wrap(function _callee6$(_context6) {
           while (1) {
             switch (_context6.prev = _context6.next) {
               case 0:
@@ -338,7 +336,7 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
   }, {
     key: "getMultiRegionStats",
     value: function () {
-      var _getMultiRegionStats = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee7() {
+      var _getMultiRegionStats = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee7() {
         var _this3 = this;
 
         var regions,
@@ -351,7 +349,7 @@ var BaseFeatureDataAdapter = /*#__PURE__*/function (_BaseAdapter) {
             featureCount,
             basesCovered,
             _args7 = arguments;
-        return _regenerator.default.wrap(function _callee7$(_context7) {
+        return _index["default"].wrap(function _callee7$(_context7) {
           while (1) {
             switch (_context7.prev = _context7.next) {
               case 0: