@jbrowse/core 1.5.2 → 1.5.6

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Files changed (150) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -2
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +113 -100
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +59 -66
  4. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  5. package/BaseFeatureWidget/index.js +1 -1
  6. package/BaseFeatureWidget/index.test.js +3 -3
  7. package/BaseFeatureWidget/types.js +5 -1
  8. package/BaseFeatureWidget/util.js +9 -13
  9. package/CorePlugin.js +19 -31
  10. package/Plugin.js +11 -13
  11. package/PluginLoader.js +33 -38
  12. package/PluginManager.d.ts +5 -5
  13. package/PluginManager.js +55 -60
  14. package/ReExports/index.js +4 -4
  15. package/ReExports/list.js +2 -2
  16. package/ReExports/material-ui-colors.js +20 -20
  17. package/ReExports/modules.js +47 -51
  18. package/TextSearch/BaseResults.js +24 -34
  19. package/TextSearch/BaseResults.test.js +3 -7
  20. package/TextSearch/TextSearchManager.d.ts +1 -1
  21. package/TextSearch/TextSearchManager.js +15 -18
  22. package/assemblyManager/assembly.js +34 -39
  23. package/assemblyManager/assemblyConfigSchema.js +2 -2
  24. package/assemblyManager/assemblyManager.js +16 -20
  25. package/assemblyManager/index.js +3 -3
  26. package/configuration/configurationSchema.js +17 -19
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/util.js +5 -5
  30. package/data_adapters/BaseAdapter.d.ts +4 -4
  31. package/data_adapters/BaseAdapter.js +36 -47
  32. package/data_adapters/BaseAdapter.test.js +24 -30
  33. package/data_adapters/CytobandAdapter.js +16 -22
  34. package/data_adapters/dataAdapterCache.js +9 -9
  35. package/package.json +7 -7
  36. package/pluggableElementTypes/AdapterType.js +22 -29
  37. package/pluggableElementTypes/ConnectionType.js +18 -26
  38. package/pluggableElementTypes/DisplayType.js +17 -25
  39. package/pluggableElementTypes/InternetAccountType.js +14 -22
  40. package/pluggableElementTypes/PluggableElementBase.js +9 -10
  41. package/pluggableElementTypes/RpcMethodType.js +40 -56
  42. package/pluggableElementTypes/RpcMethodType.test.js +17 -23
  43. package/pluggableElementTypes/TextSearchAdapterType.js +15 -23
  44. package/pluggableElementTypes/TrackType.js +15 -25
  45. package/pluggableElementTypes/ViewType.js +15 -25
  46. package/pluggableElementTypes/WidgetType.js +17 -25
  47. package/pluggableElementTypes/index.js +11 -11
  48. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  49. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  50. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  51. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  52. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  53. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  54. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  55. package/pluggableElementTypes/models/index.js +4 -4
  56. package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
  57. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -16
  58. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
  59. package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
  60. package/pluggableElementTypes/renderers/RendererType.js +21 -31
  61. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  62. package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
  63. package/pluggableElementTypes/renderers/index.js +8 -8
  64. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  65. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  66. package/rpc/BaseRpcDriver.d.ts +1 -1
  67. package/rpc/BaseRpcDriver.js +37 -42
  68. package/rpc/BaseRpcDriver.test.js +49 -63
  69. package/rpc/MainThreadRpcDriver.js +22 -32
  70. package/rpc/RpcManager.d.ts +2 -2
  71. package/rpc/RpcManager.js +20 -25
  72. package/rpc/WebWorkerRpcDriver.d.ts +2 -2
  73. package/rpc/WebWorkerRpcDriver.js +29 -40
  74. package/rpc/configSchema.js +2 -2
  75. package/rpc/coreRpcMethods.js +72 -82
  76. package/rpc/remoteAbortSignals.js +3 -3
  77. package/ui/AboutDialog.js +17 -21
  78. package/ui/App.js +38 -42
  79. package/ui/AssemblySelector.js +5 -5
  80. package/ui/Drawer.js +7 -7
  81. package/ui/DrawerWidget.js +33 -37
  82. package/ui/DropDownMenu.js +9 -21
  83. package/ui/EditableTypography.js +19 -30
  84. package/ui/ErrorMessage.js +5 -5
  85. package/ui/FactoryResetDialog.js +8 -8
  86. package/ui/FatalErrorDialog.js +12 -29
  87. package/ui/FatalErrorDialog.test.js +11 -11
  88. package/ui/FileSelector/FileSelector.js +32 -42
  89. package/ui/FileSelector/LocalFileChooser.js +9 -9
  90. package/ui/FileSelector/UrlChooser.js +4 -4
  91. package/ui/FileSelector/index.js +4 -4
  92. package/ui/Icons.js +9 -9
  93. package/ui/Logo.js +19 -19
  94. package/ui/Menu.js +35 -46
  95. package/ui/NewSessionCards.js +19 -29
  96. package/ui/PrerenderedCanvas.js +10 -27
  97. package/ui/ResizeHandle.js +10 -17
  98. package/ui/SanitizedHTML.js +5 -5
  99. package/ui/SanitizedHTML.test.js +4 -4
  100. package/ui/Snackbar.js +12 -16
  101. package/ui/SnackbarModel.js +1 -1
  102. package/ui/Tooltip.js +7 -11
  103. package/ui/ViewContainer.js +20 -30
  104. package/ui/index.js +13 -17
  105. package/ui/theme.js +11 -15
  106. package/util/Base1DViewModel.js +10 -14
  107. package/util/Base1DViewModel.test.js +5 -5
  108. package/util/QuickLRU.js +27 -31
  109. package/util/aborting.js +16 -24
  110. package/util/analytics.js +7 -7
  111. package/util/blockTypes.js +36 -49
  112. package/util/calculateDynamicBlocks.js +4 -4
  113. package/util/calculateDynamicBlocks.test.js +10 -14
  114. package/util/calculateStaticBlocks.js +1 -1
  115. package/util/calculateStaticBlocks.test.js +15 -15
  116. package/util/compositeMap.js +30 -41
  117. package/util/idMaker.js +4 -4
  118. package/util/index.js +35 -48
  119. package/util/index.test.js +7 -11
  120. package/util/io/RemoteFileWithRangeCache.js +29 -41
  121. package/util/io/index.js +6 -6
  122. package/util/jexl.js +8 -5
  123. package/util/jexlStrings.js +2 -2
  124. package/util/jexlStrings.test.js +2 -2
  125. package/util/layouts/BaseLayout.js +5 -1
  126. package/util/layouts/GranularRectLayout.js +28 -34
  127. package/util/layouts/GranularRectLayout.test.js +10 -10
  128. package/util/layouts/MultiLayout.d.ts +1 -1
  129. package/util/layouts/MultiLayout.js +14 -21
  130. package/util/layouts/PrecomputedLayout.js +14 -16
  131. package/util/layouts/PrecomputedMultiLayout.js +18 -22
  132. package/util/layouts/SceneGraph.d.ts +3 -3
  133. package/util/layouts/SceneGraph.js +17 -31
  134. package/util/layouts/index.js +6 -6
  135. package/util/mst-reflection.d.ts +3 -3
  136. package/util/offscreenCanvasPonyfill.js +29 -31
  137. package/util/offscreenCanvasUtils.js +6 -6
  138. package/util/range.test.js +20 -20
  139. package/util/rxjs.js +2 -2
  140. package/util/simpleFeature.js +19 -24
  141. package/util/simpleFeature.test.js +3 -3
  142. package/util/stats.js +7 -11
  143. package/util/stats.test.js +15 -15
  144. package/util/types/index.d.ts +2 -0
  145. package/util/types/index.js +29 -36
  146. package/util/types/mst.js +15 -19
  147. package/util/types/util.js +5 -1
  148. package/util/when.js +6 -6
  149. package/babel.config.d.ts +0 -15
  150. package/babel.config.js +0 -19
@@ -1,6 +1,6 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
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  Object.defineProperty(exports, "BaseConnectionModelFactory", {
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  enumerable: true,
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  get: function get() {
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- return _BaseConnectionModelFactory.default;
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+ return _BaseConnectionModelFactory["default"];
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  }
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  });
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  Object.defineProperty(exports, "BaseDisplay", {
@@ -26,7 +26,7 @@ Object.defineProperty(exports, "BaseInternetAccountConfig", {
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  Object.defineProperty(exports, "BaseViewModel", {
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  enumerable: true,
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  get: function get() {
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- return _BaseViewModel.default;
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+ return _BaseViewModel["default"];
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  }
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  });
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  Object.defineProperty(exports, "InternetAccount", {
@@ -38,7 +38,7 @@ Object.defineProperty(exports, "InternetAccount", {
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  Object.defineProperty(exports, "baseConnectionConfig", {
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  enumerable: true,
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  get: function get() {
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- return _baseConnectionConfig.default;
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+ return _baseConnectionConfig["default"];
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  }
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  });
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  Object.defineProperty(exports, "createBaseTrackConfig", {
@@ -1,33 +1,31 @@
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  "use strict";
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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+ var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports.default = exports.LayoutSession = void 0;
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+ exports["default"] = exports.LayoutSession = void 0;
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- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
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+ var _index = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/regenerator/index.js"));
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- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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+ var _slicedToArray2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/slicedToArray.js"));
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- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
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+ var _asyncToGenerator2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
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- var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
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+ var _objectSpread2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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- var _get2 = _interopRequireDefault(require("@babel/runtime/helpers/get"));
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+ var _get2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/get.js"));
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- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
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+ var _getPrototypeOf2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/getPrototypeOf.js"));
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- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
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+ var _inherits2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/inherits.js"));
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- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
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+ var _createSuper2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
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- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
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+ var _classCallCheck2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
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- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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-
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- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
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+ var _createClass2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createClass.js"));
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  var _fastDeepEqual = _interopRequireDefault(require("fast-deep-equal"));
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@@ -41,21 +39,13 @@ var _FeatureRendererType2 = _interopRequireDefault(require("./FeatureRendererTyp
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  var _configuration = require("../../configuration");
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- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
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-
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- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
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-
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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-
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- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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-
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  var LayoutSession = /*#__PURE__*/function () {
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  function LayoutSession(args) {
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- (0, _classCallCheck2.default)(this, LayoutSession);
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- (0, _defineProperty2.default)(this, "config", void 0);
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- (0, _defineProperty2.default)(this, "bpPerPx", void 0);
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- (0, _defineProperty2.default)(this, "filters", void 0);
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- (0, _defineProperty2.default)(this, "cachedLayout", void 0);
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+ (0, _classCallCheck2["default"])(this, LayoutSession);
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+ this.config = void 0;
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+ this.bpPerPx = void 0;
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+ this.filters = void 0;
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+ this.cachedLayout = void 0;
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  this.config = args.config;
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@@ -67,7 +57,7 @@ var LayoutSession = /*#__PURE__*/function () {
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  this.update(args);
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  }
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+ (0, _createClass2["default"])(LayoutSession, [{
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  Object.assign(this, props);
@@ -75,7 +65,7 @@ var LayoutSession = /*#__PURE__*/function () {
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  }, {
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  key: "makeLayout",
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  value: function makeLayout() {
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- return new _MultiLayout.default(_GranularRectLayout.default, {
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+ return new _MultiLayout["default"](_GranularRectLayout["default"], {
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  maxHeight: (0, _configuration.readConfObject)(this.config, 'maxHeight'),
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@@ -90,7 +80,7 @@ var LayoutSession = /*#__PURE__*/function () {
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  }, {
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  key: "cachedLayoutIsValid",
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- return cachedLayout && cachedLayout.layout.subLayoutConstructorArgs.pitchX === this.bpPerPx && (0, _fastDeepEqual.default)((0, _configuration.readConfObject)(this.config), cachedLayout.config) && (0, _fastDeepEqual.default)(this.filters, cachedLayout.filters);
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+ return cachedLayout && cachedLayout.layout.subLayoutConstructorArgs.pitchX === this.bpPerPx && (0, _fastDeepEqual["default"])((0, _configuration.readConfObject)(this.config), cachedLayout.config) && (0, _fastDeepEqual["default"])(this.filters, cachedLayout.filters);
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  }
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+ (0, _inherits2["default"])(BoxRendererType, _FeatureRendererType);
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+ var _super = (0, _createSuper2["default"])(BoxRendererType);
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  }
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+ _this.sessions = {};
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  return _this;
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  }
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+ (0, _createClass2["default"])(BoxRendererType, [{
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  key: "getWorkerSession",
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  value: function getWorkerSession(props) {
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  var sessionId = props.sessionId;
@@ -160,7 +150,7 @@ var BoxRendererType = /*#__PURE__*/function (_FeatureRendererType) {
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  }
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- return _objectSpread(_objectSpread({}, region), {}, {
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+ return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, region), {}, {
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  start: Math.floor(Math.max(region.start - bpExpansion, 0)),
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  end: Math.ceil(region.end + bpExpansion)
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@@ -173,9 +163,9 @@ var BoxRendererType = /*#__PURE__*/function (_FeatureRendererType) {
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  }, {
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  key: "freeResourcesInClient",
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  value: function () {
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- var _freeResourcesInClient = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(rpcManager, args) {
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+ var _freeResourcesInClient = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(rpcManager, args) {
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  var sessionId, regions, freed, session;
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+ return _index["default"].wrap(function _callee$(_context) {
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  while (1) {
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@@ -194,7 +184,7 @@ var BoxRendererType = /*#__PURE__*/function (_FeatureRendererType) {
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+ return (0, _get2["default"])((0, _getPrototypeOf2["default"])(BoxRendererType.prototype), "freeResourcesInClient", this).call(this, rpcManager, args);
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@@ -217,13 +207,13 @@ var BoxRendererType = /*#__PURE__*/function (_FeatureRendererType) {
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  }, {
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  key: "deserializeLayoutInClient",
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  value: function deserializeLayoutInClient(json) {
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+ return new _PrecomputedLayout["default"](json);
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  key: "deserializeResultsInClient",
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  value: function deserializeResultsInClient(result, args) {
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  var layout = this.deserializeLayoutInClient(result.layout);
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- var deserialized = (0, _get2.default)((0, _getPrototypeOf2.default)(BoxRendererType.prototype), "deserializeResultsInClient", this).call(this, _objectSpread(_objectSpread({}, result), {}, {
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+ var deserialized = (0, _get2["default"])((0, _getPrototypeOf2["default"])(BoxRendererType.prototype), "deserializeResultsInClient", this).call(this, (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, result), {}, {
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  layout: layout
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  }), args); // // debugging aid: check if there are features in `features` that are not in the layout
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  // const featureIds1 = iterMap(deserialized.features.values(), f =>
@@ -251,9 +241,9 @@ var BoxRendererType = /*#__PURE__*/function (_FeatureRendererType) {
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  key: "serializeResultsInWorker",
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  value: function serializeResultsInWorker(results, args) {
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- var serialized = (0, _get2.default)((0, _getPrototypeOf2.default)(BoxRendererType.prototype), "serializeResultsInWorker", this).call(this, results, args);
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+ var serialized = (0, _get2["default"])((0, _getPrototypeOf2["default"])(BoxRendererType.prototype), "serializeResultsInWorker", this).call(this, results, args);
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- var _args$regions = (0, _slicedToArray2.default)(args.regions, 1),
246
+ var _args$regions = (0, _slicedToArray2["default"])(args.regions, 1),
257
247
  region = _args$regions[0];
258
248
 
259
249
  serialized.layout = results.layout.serializeRegion(this.getExpandedRegion(region, args));
@@ -276,21 +266,21 @@ var BoxRendererType = /*#__PURE__*/function (_FeatureRendererType) {
276
266
  }, {
277
267
  key: "render",
278
268
  value: function () {
279
- var _render = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(props) {
269
+ var _render = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(props) {
280
270
  var layout, result;
281
- return _regenerator.default.wrap(function _callee2$(_context2) {
271
+ return _index["default"].wrap(function _callee2$(_context2) {
282
272
  while (1) {
283
273
  switch (_context2.prev = _context2.next) {
284
274
  case 0:
285
275
  layout = props.layout || this.createLayoutInWorker(props);
286
276
  _context2.next = 3;
287
- return (0, _get2.default)((0, _getPrototypeOf2.default)(BoxRendererType.prototype), "render", this).call(this, _objectSpread(_objectSpread({}, props), {}, {
277
+ return (0, _get2["default"])((0, _getPrototypeOf2["default"])(BoxRendererType.prototype), "render", this).call(this, (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, props), {}, {
288
278
  layout: layout
289
279
  }));
290
280
 
291
281
  case 3:
292
282
  result = _context2.sent;
293
- return _context2.abrupt("return", _objectSpread(_objectSpread({}, result), {}, {
283
+ return _context2.abrupt("return", (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, result), {}, {
294
284
  layout: layout
295
285
  }));
296
286
 
@@ -310,6 +300,6 @@ var BoxRendererType = /*#__PURE__*/function (_FeatureRendererType) {
310
300
  }()
311
301
  }]);
312
302
  return BoxRendererType;
313
- }(_FeatureRendererType2.default);
303
+ }(_FeatureRendererType2["default"]);
314
304
 
315
- exports.default = BoxRendererType;
305
+ exports["default"] = BoxRendererType;
@@ -1,37 +1,33 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
10
+ var _createClass2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createClass.js"));
11
11
 
12
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
12
+ var _classCallCheck2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
13
13
 
14
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
14
+ var _inherits2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/inherits.js"));
15
15
 
16
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
16
+ var _createSuper2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
17
17
 
18
18
  var _FeatureRendererType = _interopRequireDefault(require("./FeatureRendererType"));
19
19
 
20
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
21
-
22
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
23
-
24
20
  var CircularChordRendererType = /*#__PURE__*/function (_FeatureRenderer) {
25
- (0, _inherits2.default)(CircularChordRendererType, _FeatureRenderer);
21
+ (0, _inherits2["default"])(CircularChordRendererType, _FeatureRenderer);
26
22
 
27
- var _super = _createSuper(CircularChordRendererType);
23
+ var _super = (0, _createSuper2["default"])(CircularChordRendererType);
28
24
 
29
25
  function CircularChordRendererType() {
30
- (0, _classCallCheck2.default)(this, CircularChordRendererType);
26
+ (0, _classCallCheck2["default"])(this, CircularChordRendererType);
31
27
  return _super.apply(this, arguments);
32
28
  }
33
29
 
34
- return CircularChordRendererType;
35
- }(_FeatureRendererType.default);
30
+ return (0, _createClass2["default"])(CircularChordRendererType);
31
+ }(_FeatureRendererType["default"]);
36
32
 
37
- exports.default = CircularChordRendererType;
33
+ exports["default"] = CircularChordRendererType;
@@ -1,29 +1,29 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
10
+ var _index = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/regenerator/index.js"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
13
13
 
14
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
14
+ var _objectSpread2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
15
15
 
16
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
16
+ var _classCallCheck2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
17
17
 
18
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
18
+ var _createClass2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createClass.js"));
19
19
 
20
- var _get2 = _interopRequireDefault(require("@babel/runtime/helpers/get"));
20
+ var _get2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/get.js"));
21
21
 
22
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
22
+ var _getPrototypeOf2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/getPrototypeOf.js"));
23
23
 
24
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
24
+ var _inherits2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/inherits.js"));
25
25
 
26
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
26
+ var _createSuper2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
27
27
 
28
28
  var _operators = require("rxjs/operators");
29
29
 
@@ -31,25 +31,18 @@ var _ServerSideRendererType = _interopRequireDefault(require("./ServerSideRender
31
31
 
32
32
  var _dataAdapterCache = require("../../data_adapters/dataAdapterCache");
33
33
 
34
- function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); if (enumerableOnly) { symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; }); } keys.push.apply(keys, symbols); } return keys; }
35
-
36
- function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
37
-
38
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
39
-
40
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
41
-
34
+ /* eslint-disable @typescript-eslint/no-explicit-any */
42
35
  var ComparativeServerSideRenderer = /*#__PURE__*/function (_ServerSideRenderer) {
43
- (0, _inherits2.default)(ComparativeServerSideRenderer, _ServerSideRenderer);
36
+ (0, _inherits2["default"])(ComparativeServerSideRenderer, _ServerSideRenderer);
44
37
 
45
- var _super = _createSuper(ComparativeServerSideRenderer);
38
+ var _super = (0, _createSuper2["default"])(ComparativeServerSideRenderer);
46
39
 
47
40
  function ComparativeServerSideRenderer() {
48
- (0, _classCallCheck2.default)(this, ComparativeServerSideRenderer);
41
+ (0, _classCallCheck2["default"])(this, ComparativeServerSideRenderer);
49
42
  return _super.apply(this, arguments);
50
43
  }
51
44
 
52
- (0, _createClass2.default)(ComparativeServerSideRenderer, [{
45
+ (0, _createClass2["default"])(ComparativeServerSideRenderer, [{
53
46
  key: "serializeArgsInClient",
54
47
  value:
55
48
  /**
@@ -66,18 +59,17 @@ var ComparativeServerSideRenderer = /*#__PURE__*/function (_ServerSideRenderer)
66
59
  * @returns the same object
67
60
  */
68
61
  function serializeArgsInClient(args) {
69
- var deserializedArgs = _objectSpread(_objectSpread({}, args), {}, {
62
+ var deserializedArgs = (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, args), {}, {
70
63
  displayModel: {}
71
64
  });
72
-
73
- return (0, _get2.default)((0, _getPrototypeOf2.default)(ComparativeServerSideRenderer.prototype), "serializeArgsInClient", this).call(this, deserializedArgs);
65
+ return (0, _get2["default"])((0, _getPrototypeOf2["default"])(ComparativeServerSideRenderer.prototype), "serializeArgsInClient", this).call(this, deserializedArgs);
74
66
  } // deserialize some of the results that came back from the worker
75
67
 
76
68
  }, {
77
69
  key: "deserializeResultsInClient",
78
70
  value: function deserializeResultsInClient(result, args) {
79
- var deserialized = (0, _get2.default)((0, _getPrototypeOf2.default)(ComparativeServerSideRenderer.prototype), "deserializeResultsInClient", this).call(this, result, args);
80
- return _objectSpread(_objectSpread({}, deserialized), {}, {
71
+ var deserialized = (0, _get2["default"])((0, _getPrototypeOf2["default"])(ComparativeServerSideRenderer.prototype), "deserializeResultsInClient", this).call(this, result, args);
72
+ return (0, _objectSpread2["default"])((0, _objectSpread2["default"])({}, deserialized), {}, {
81
73
  blockKey: args.blockKey
82
74
  });
83
75
  }
@@ -89,8 +81,8 @@ var ComparativeServerSideRenderer = /*#__PURE__*/function (_ServerSideRenderer)
89
81
  }, {
90
82
  key: "renderInClient",
91
83
  value: function () {
92
- var _renderInClient = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(rpcManager, args) {
93
- return _regenerator.default.wrap(function _callee$(_context) {
84
+ var _renderInClient = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(rpcManager, args) {
85
+ return _index["default"].wrap(function _callee$(_context) {
94
86
  while (1) {
95
87
  switch (_context.prev = _context.next) {
96
88
  case 0:
@@ -128,12 +120,12 @@ var ComparativeServerSideRenderer = /*#__PURE__*/function (_ServerSideRenderer)
128
120
  }, {
129
121
  key: "getFeatures",
130
122
  value: function () {
131
- var _getFeatures = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(renderArgs) {
123
+ var _getFeatures = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee2(renderArgs) {
132
124
  var _this = this;
133
125
 
134
126
  var signal, sessionId, adapterConfig, _yield$getAdapter, dataAdapter, regions, requestRegions, featureObservable;
135
127
 
136
- return _regenerator.default.wrap(function _callee2$(_context2) {
128
+ return _index["default"].wrap(function _callee2$(_context2) {
137
129
  while (1) {
138
130
  switch (_context2.prev = _context2.next) {
139
131
  case 0:
@@ -160,7 +152,7 @@ var ComparativeServerSideRenderer = /*#__PURE__*/function (_ServerSideRenderer)
160
152
  requestRegions = regions.map(function (r) {
161
153
  // make sure the requested region's start and end are integers, if
162
154
  // there is a region specification.
163
- var requestRegion = _objectSpread({}, r);
155
+ var requestRegion = (0, _objectSpread2["default"])({}, r);
164
156
 
165
157
  if (requestRegion.start) {
166
158
  requestRegion.start = Math.floor(requestRegion.start);
@@ -197,6 +189,6 @@ var ComparativeServerSideRenderer = /*#__PURE__*/function (_ServerSideRenderer)
197
189
  }()
198
190
  }]);
199
191
  return ComparativeServerSideRenderer;
200
- }(_ServerSideRendererType.default);
192
+ }(_ServerSideRendererType["default"]);
201
193
 
202
- exports.default = ComparativeServerSideRenderer;
194
+ exports["default"] = ComparativeServerSideRenderer;