@jbrowse/core 1.5.2 → 1.5.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -2
- package/BaseFeatureWidget/BaseFeatureDetail.js +113 -100
- package/BaseFeatureWidget/SequenceFeatureDetails.js +59 -66
- package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
- package/BaseFeatureWidget/index.js +1 -1
- package/BaseFeatureWidget/index.test.js +3 -3
- package/BaseFeatureWidget/types.js +5 -1
- package/BaseFeatureWidget/util.js +9 -13
- package/CorePlugin.js +19 -31
- package/Plugin.js +11 -13
- package/PluginLoader.js +33 -38
- package/PluginManager.d.ts +5 -5
- package/PluginManager.js +55 -60
- package/ReExports/index.js +4 -4
- package/ReExports/list.js +2 -2
- package/ReExports/material-ui-colors.js +20 -20
- package/ReExports/modules.js +47 -51
- package/TextSearch/BaseResults.js +24 -34
- package/TextSearch/BaseResults.test.js +3 -7
- package/TextSearch/TextSearchManager.d.ts +1 -1
- package/TextSearch/TextSearchManager.js +15 -18
- package/assemblyManager/assembly.js +34 -39
- package/assemblyManager/assemblyConfigSchema.js +2 -2
- package/assemblyManager/assemblyManager.js +16 -20
- package/assemblyManager/index.js +3 -3
- package/configuration/configurationSchema.js +17 -19
- package/configuration/configurationSlot.js +11 -11
- package/configuration/configurationSlot.test.js +5 -5
- package/configuration/util.js +5 -5
- package/data_adapters/BaseAdapter.d.ts +4 -4
- package/data_adapters/BaseAdapter.js +36 -47
- package/data_adapters/BaseAdapter.test.js +24 -30
- package/data_adapters/CytobandAdapter.js +16 -22
- package/data_adapters/dataAdapterCache.js +9 -9
- package/package.json +7 -7
- package/pluggableElementTypes/AdapterType.js +22 -29
- package/pluggableElementTypes/ConnectionType.js +18 -26
- package/pluggableElementTypes/DisplayType.js +17 -25
- package/pluggableElementTypes/InternetAccountType.js +14 -22
- package/pluggableElementTypes/PluggableElementBase.js +9 -10
- package/pluggableElementTypes/RpcMethodType.js +40 -56
- package/pluggableElementTypes/RpcMethodType.test.js +17 -23
- package/pluggableElementTypes/TextSearchAdapterType.js +15 -23
- package/pluggableElementTypes/TrackType.js +15 -25
- package/pluggableElementTypes/ViewType.js +15 -25
- package/pluggableElementTypes/WidgetType.js +17 -25
- package/pluggableElementTypes/index.js +11 -11
- package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
- package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
- package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
- package/pluggableElementTypes/models/BaseViewModel.js +3 -3
- package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
- package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
- package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
- package/pluggableElementTypes/models/index.js +4 -4
- package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
- package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -16
- package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
- package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
- package/pluggableElementTypes/renderers/RendererType.js +21 -31
- package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
- package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
- package/pluggableElementTypes/renderers/index.js +8 -8
- package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
- package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
- package/rpc/BaseRpcDriver.d.ts +1 -1
- package/rpc/BaseRpcDriver.js +37 -42
- package/rpc/BaseRpcDriver.test.js +49 -63
- package/rpc/MainThreadRpcDriver.js +22 -32
- package/rpc/RpcManager.d.ts +2 -2
- package/rpc/RpcManager.js +20 -25
- package/rpc/WebWorkerRpcDriver.d.ts +2 -2
- package/rpc/WebWorkerRpcDriver.js +29 -40
- package/rpc/configSchema.js +2 -2
- package/rpc/coreRpcMethods.js +72 -82
- package/rpc/remoteAbortSignals.js +3 -3
- package/ui/AboutDialog.js +17 -21
- package/ui/App.js +38 -42
- package/ui/AssemblySelector.js +5 -5
- package/ui/Drawer.js +7 -7
- package/ui/DrawerWidget.js +33 -37
- package/ui/DropDownMenu.js +9 -21
- package/ui/EditableTypography.js +19 -30
- package/ui/ErrorMessage.js +5 -5
- package/ui/FactoryResetDialog.js +8 -8
- package/ui/FatalErrorDialog.js +12 -29
- package/ui/FatalErrorDialog.test.js +11 -11
- package/ui/FileSelector/FileSelector.js +32 -42
- package/ui/FileSelector/LocalFileChooser.js +9 -9
- package/ui/FileSelector/UrlChooser.js +4 -4
- package/ui/FileSelector/index.js +4 -4
- package/ui/Icons.js +9 -9
- package/ui/Logo.js +19 -19
- package/ui/Menu.js +35 -46
- package/ui/NewSessionCards.js +19 -29
- package/ui/PrerenderedCanvas.js +10 -27
- package/ui/ResizeHandle.js +10 -17
- package/ui/SanitizedHTML.js +5 -5
- package/ui/SanitizedHTML.test.js +4 -4
- package/ui/Snackbar.js +12 -16
- package/ui/SnackbarModel.js +1 -1
- package/ui/Tooltip.js +7 -11
- package/ui/ViewContainer.js +20 -30
- package/ui/index.js +13 -17
- package/ui/theme.js +11 -15
- package/util/Base1DViewModel.js +10 -14
- package/util/Base1DViewModel.test.js +5 -5
- package/util/QuickLRU.js +27 -31
- package/util/aborting.js +16 -24
- package/util/analytics.js +7 -7
- package/util/blockTypes.js +36 -49
- package/util/calculateDynamicBlocks.js +4 -4
- package/util/calculateDynamicBlocks.test.js +10 -14
- package/util/calculateStaticBlocks.js +1 -1
- package/util/calculateStaticBlocks.test.js +15 -15
- package/util/compositeMap.js +30 -41
- package/util/idMaker.js +4 -4
- package/util/index.js +35 -48
- package/util/index.test.js +7 -11
- package/util/io/RemoteFileWithRangeCache.js +29 -41
- package/util/io/index.js +6 -6
- package/util/jexl.js +8 -5
- package/util/jexlStrings.js +2 -2
- package/util/jexlStrings.test.js +2 -2
- package/util/layouts/BaseLayout.js +5 -1
- package/util/layouts/GranularRectLayout.js +28 -34
- package/util/layouts/GranularRectLayout.test.js +10 -10
- package/util/layouts/MultiLayout.d.ts +1 -1
- package/util/layouts/MultiLayout.js +14 -21
- package/util/layouts/PrecomputedLayout.js +14 -16
- package/util/layouts/PrecomputedMultiLayout.js +18 -22
- package/util/layouts/SceneGraph.d.ts +3 -3
- package/util/layouts/SceneGraph.js +17 -31
- package/util/layouts/index.js +6 -6
- package/util/mst-reflection.d.ts +3 -3
- package/util/offscreenCanvasPonyfill.js +29 -31
- package/util/offscreenCanvasUtils.js +6 -6
- package/util/range.test.js +20 -20
- package/util/rxjs.js +2 -2
- package/util/simpleFeature.js +19 -24
- package/util/simpleFeature.test.js +3 -3
- package/util/stats.js +7 -11
- package/util/stats.test.js +15 -15
- package/util/types/index.d.ts +2 -0
- package/util/types/index.js +29 -36
- package/util/types/mst.js +15 -19
- package/util/types/util.js +5 -1
- package/util/when.js +6 -6
- package/babel.config.d.ts +0 -15
- package/babel.config.js +0 -19
package/util/types/mst.js
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"use strict";
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var _interopRequireDefault = require("
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var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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exports.UriLocationRaw = exports.UriLocation = exports.Region = exports.PropTypes = exports.NoAssemblyRegion = exports.LocalPathLocation = exports.FileLocation = exports.ElementId = exports.BlobLocation = void 0;
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var
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var _objectSpread2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/objectSpread2.js"));
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var _objectWithoutProperties2 = _interopRequireDefault(require("
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var _objectWithoutProperties2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/objectWithoutProperties.js"));
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var _shortid = _interopRequireDefault(require("shortid"));
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var _excluded = ["baseUri"],
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_excluded2 = ["locationType"];
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = arguments[i] != null ? arguments[i] : {}; if (i % 2) { ownKeys(Object(source), true).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }); } else if (Object.getOwnPropertyDescriptors) { Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)); } else { ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } } return target; }
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var ElementId = _mobxStateTree.types.optional(_mobxStateTree.types.identifier, _shortid.default.generate); // PropTypes that are useful when working with instances of these in react components
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var ElementId = _mobxStateTree.types.optional(_mobxStateTree.types.identifier, _shortid["default"].generate); // PropTypes that are useful when working with instances of these in react components
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exports.ElementId = ElementId;
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var PropTypes = {
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Region: _propTypes
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refName: _propTypes
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Region: _propTypes["default"].shape({
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refName: _propTypes["default"].string.isRequired,
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start: _propTypes["default"].number.isRequired,
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end: _propTypes["default"].number.isRequired
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ConfigSchema: _mobxReact.PropTypes.objectOrObservableObject,
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Feature: _propTypes
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get: _propTypes
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id: _propTypes
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Feature: _propTypes["default"].shape({
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get: _propTypes["default"].func.isRequired,
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id: _propTypes["default"].func.isRequired
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exports.PropTypes = PropTypes;
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refName: _mobxStateTree.types.string,
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reversed: _mobxStateTree.types.optional(_mobxStateTree.types
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reversed: _mobxStateTree.types.optional(_mobxStateTree.types["boolean"], false)
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}).actions(function (self) {
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setRefName: function setRefName(newRefName) {
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postProcessor: function postProcessor(snap) {
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var locationType = snapshot.locationType,
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rest = (0, _objectWithoutProperties2["default"])(snapshot, _excluded2);
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package/util/types/util.js
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package/util/when.js
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exports.when = when;
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exports.whenPresent = whenPresent;
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