@jbrowse/core 1.5.2 → 1.5.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (150) hide show
  1. package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -2
  2. package/BaseFeatureWidget/BaseFeatureDetail.js +113 -100
  3. package/BaseFeatureWidget/SequenceFeatureDetails.js +59 -66
  4. package/BaseFeatureWidget/SequenceFeatureDetails.test.js +9 -9
  5. package/BaseFeatureWidget/index.js +1 -1
  6. package/BaseFeatureWidget/index.test.js +3 -3
  7. package/BaseFeatureWidget/types.js +5 -1
  8. package/BaseFeatureWidget/util.js +9 -13
  9. package/CorePlugin.js +19 -31
  10. package/Plugin.js +11 -13
  11. package/PluginLoader.js +33 -38
  12. package/PluginManager.d.ts +5 -5
  13. package/PluginManager.js +55 -60
  14. package/ReExports/index.js +4 -4
  15. package/ReExports/list.js +2 -2
  16. package/ReExports/material-ui-colors.js +20 -20
  17. package/ReExports/modules.js +47 -51
  18. package/TextSearch/BaseResults.js +24 -34
  19. package/TextSearch/BaseResults.test.js +3 -7
  20. package/TextSearch/TextSearchManager.d.ts +1 -1
  21. package/TextSearch/TextSearchManager.js +15 -18
  22. package/assemblyManager/assembly.js +34 -39
  23. package/assemblyManager/assemblyConfigSchema.js +2 -2
  24. package/assemblyManager/assemblyManager.js +16 -20
  25. package/assemblyManager/index.js +3 -3
  26. package/configuration/configurationSchema.js +17 -19
  27. package/configuration/configurationSlot.js +11 -11
  28. package/configuration/configurationSlot.test.js +5 -5
  29. package/configuration/util.js +5 -5
  30. package/data_adapters/BaseAdapter.d.ts +4 -4
  31. package/data_adapters/BaseAdapter.js +36 -47
  32. package/data_adapters/BaseAdapter.test.js +24 -30
  33. package/data_adapters/CytobandAdapter.js +16 -22
  34. package/data_adapters/dataAdapterCache.js +9 -9
  35. package/package.json +7 -7
  36. package/pluggableElementTypes/AdapterType.js +22 -29
  37. package/pluggableElementTypes/ConnectionType.js +18 -26
  38. package/pluggableElementTypes/DisplayType.js +17 -25
  39. package/pluggableElementTypes/InternetAccountType.js +14 -22
  40. package/pluggableElementTypes/PluggableElementBase.js +9 -10
  41. package/pluggableElementTypes/RpcMethodType.js +40 -56
  42. package/pluggableElementTypes/RpcMethodType.test.js +17 -23
  43. package/pluggableElementTypes/TextSearchAdapterType.js +15 -23
  44. package/pluggableElementTypes/TrackType.js +15 -25
  45. package/pluggableElementTypes/ViewType.js +15 -25
  46. package/pluggableElementTypes/WidgetType.js +17 -25
  47. package/pluggableElementTypes/index.js +11 -11
  48. package/pluggableElementTypes/models/BaseConnectionModelFactory.js +5 -5
  49. package/pluggableElementTypes/models/BaseDisplayModel.js +5 -8
  50. package/pluggableElementTypes/models/BaseTrackModel.js +8 -11
  51. package/pluggableElementTypes/models/BaseViewModel.js +3 -3
  52. package/pluggableElementTypes/models/InternetAccountModel.js +5 -5
  53. package/pluggableElementTypes/models/baseConnectionConfig.js +2 -2
  54. package/pluggableElementTypes/models/baseTrackConfig.js +4 -7
  55. package/pluggableElementTypes/models/index.js +4 -4
  56. package/pluggableElementTypes/renderers/BoxRendererType.js +39 -49
  57. package/pluggableElementTypes/renderers/CircularChordRendererType.js +12 -16
  58. package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +27 -35
  59. package/pluggableElementTypes/renderers/FeatureRendererType.js +36 -46
  60. package/pluggableElementTypes/renderers/RendererType.js +21 -31
  61. package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +8 -12
  62. package/pluggableElementTypes/renderers/ServerSideRendererType.js +31 -44
  63. package/pluggableElementTypes/renderers/index.js +8 -8
  64. package/pluggableElementTypes/renderers/util/serializableFilterChain.js +8 -10
  65. package/pluggableElementTypes/renderers/util/serializableFilterChain.test.js +2 -2
  66. package/rpc/BaseRpcDriver.d.ts +1 -1
  67. package/rpc/BaseRpcDriver.js +37 -42
  68. package/rpc/BaseRpcDriver.test.js +49 -63
  69. package/rpc/MainThreadRpcDriver.js +22 -32
  70. package/rpc/RpcManager.d.ts +2 -2
  71. package/rpc/RpcManager.js +20 -25
  72. package/rpc/WebWorkerRpcDriver.d.ts +2 -2
  73. package/rpc/WebWorkerRpcDriver.js +29 -40
  74. package/rpc/configSchema.js +2 -2
  75. package/rpc/coreRpcMethods.js +72 -82
  76. package/rpc/remoteAbortSignals.js +3 -3
  77. package/ui/AboutDialog.js +17 -21
  78. package/ui/App.js +38 -42
  79. package/ui/AssemblySelector.js +5 -5
  80. package/ui/Drawer.js +7 -7
  81. package/ui/DrawerWidget.js +33 -37
  82. package/ui/DropDownMenu.js +9 -21
  83. package/ui/EditableTypography.js +19 -30
  84. package/ui/ErrorMessage.js +5 -5
  85. package/ui/FactoryResetDialog.js +8 -8
  86. package/ui/FatalErrorDialog.js +12 -29
  87. package/ui/FatalErrorDialog.test.js +11 -11
  88. package/ui/FileSelector/FileSelector.js +32 -42
  89. package/ui/FileSelector/LocalFileChooser.js +9 -9
  90. package/ui/FileSelector/UrlChooser.js +4 -4
  91. package/ui/FileSelector/index.js +4 -4
  92. package/ui/Icons.js +9 -9
  93. package/ui/Logo.js +19 -19
  94. package/ui/Menu.js +35 -46
  95. package/ui/NewSessionCards.js +19 -29
  96. package/ui/PrerenderedCanvas.js +10 -27
  97. package/ui/ResizeHandle.js +10 -17
  98. package/ui/SanitizedHTML.js +5 -5
  99. package/ui/SanitizedHTML.test.js +4 -4
  100. package/ui/Snackbar.js +12 -16
  101. package/ui/SnackbarModel.js +1 -1
  102. package/ui/Tooltip.js +7 -11
  103. package/ui/ViewContainer.js +20 -30
  104. package/ui/index.js +13 -17
  105. package/ui/theme.js +11 -15
  106. package/util/Base1DViewModel.js +10 -14
  107. package/util/Base1DViewModel.test.js +5 -5
  108. package/util/QuickLRU.js +27 -31
  109. package/util/aborting.js +16 -24
  110. package/util/analytics.js +7 -7
  111. package/util/blockTypes.js +36 -49
  112. package/util/calculateDynamicBlocks.js +4 -4
  113. package/util/calculateDynamicBlocks.test.js +10 -14
  114. package/util/calculateStaticBlocks.js +1 -1
  115. package/util/calculateStaticBlocks.test.js +15 -15
  116. package/util/compositeMap.js +30 -41
  117. package/util/idMaker.js +4 -4
  118. package/util/index.js +35 -48
  119. package/util/index.test.js +7 -11
  120. package/util/io/RemoteFileWithRangeCache.js +29 -41
  121. package/util/io/index.js +6 -6
  122. package/util/jexl.js +8 -5
  123. package/util/jexlStrings.js +2 -2
  124. package/util/jexlStrings.test.js +2 -2
  125. package/util/layouts/BaseLayout.js +5 -1
  126. package/util/layouts/GranularRectLayout.js +28 -34
  127. package/util/layouts/GranularRectLayout.test.js +10 -10
  128. package/util/layouts/MultiLayout.d.ts +1 -1
  129. package/util/layouts/MultiLayout.js +14 -21
  130. package/util/layouts/PrecomputedLayout.js +14 -16
  131. package/util/layouts/PrecomputedMultiLayout.js +18 -22
  132. package/util/layouts/SceneGraph.d.ts +3 -3
  133. package/util/layouts/SceneGraph.js +17 -31
  134. package/util/layouts/index.js +6 -6
  135. package/util/mst-reflection.d.ts +3 -3
  136. package/util/offscreenCanvasPonyfill.js +29 -31
  137. package/util/offscreenCanvasUtils.js +6 -6
  138. package/util/range.test.js +20 -20
  139. package/util/rxjs.js +2 -2
  140. package/util/simpleFeature.js +19 -24
  141. package/util/simpleFeature.test.js +3 -3
  142. package/util/stats.js +7 -11
  143. package/util/stats.test.js +15 -15
  144. package/util/types/index.d.ts +2 -0
  145. package/util/types/index.js +29 -36
  146. package/util/types/mst.js +15 -19
  147. package/util/types/util.js +5 -1
  148. package/util/when.js +6 -6
  149. package/babel.config.d.ts +0 -15
  150. package/babel.config.js +0 -19
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
@@ -8,115 +8,115 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "amber", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _amber.default;
11
+ return _amber["default"];
12
12
  }
13
13
  });
14
14
  Object.defineProperty(exports, "blue", {
15
15
  enumerable: true,
16
16
  get: function get() {
17
- return _blue.default;
17
+ return _blue["default"];
18
18
  }
19
19
  });
20
20
  Object.defineProperty(exports, "blueGrey", {
21
21
  enumerable: true,
22
22
  get: function get() {
23
- return _blueGrey.default;
23
+ return _blueGrey["default"];
24
24
  }
25
25
  });
26
26
  Object.defineProperty(exports, "brown", {
27
27
  enumerable: true,
28
28
  get: function get() {
29
- return _brown.default;
29
+ return _brown["default"];
30
30
  }
31
31
  });
32
32
  Object.defineProperty(exports, "cyan", {
33
33
  enumerable: true,
34
34
  get: function get() {
35
- return _cyan.default;
35
+ return _cyan["default"];
36
36
  }
37
37
  });
38
38
  Object.defineProperty(exports, "deepOrange", {
39
39
  enumerable: true,
40
40
  get: function get() {
41
- return _deepOrange.default;
41
+ return _deepOrange["default"];
42
42
  }
43
43
  });
44
44
  Object.defineProperty(exports, "deepPurple", {
45
45
  enumerable: true,
46
46
  get: function get() {
47
- return _deepPurple.default;
47
+ return _deepPurple["default"];
48
48
  }
49
49
  });
50
50
  Object.defineProperty(exports, "green", {
51
51
  enumerable: true,
52
52
  get: function get() {
53
- return _green.default;
53
+ return _green["default"];
54
54
  }
55
55
  });
56
56
  Object.defineProperty(exports, "grey", {
57
57
  enumerable: true,
58
58
  get: function get() {
59
- return _grey.default;
59
+ return _grey["default"];
60
60
  }
61
61
  });
62
62
  Object.defineProperty(exports, "indigo", {
63
63
  enumerable: true,
64
64
  get: function get() {
65
- return _indigo.default;
65
+ return _indigo["default"];
66
66
  }
67
67
  });
68
68
  Object.defineProperty(exports, "lightBlue", {
69
69
  enumerable: true,
70
70
  get: function get() {
71
- return _lightBlue.default;
71
+ return _lightBlue["default"];
72
72
  }
73
73
  });
74
74
  Object.defineProperty(exports, "lightGreen", {
75
75
  enumerable: true,
76
76
  get: function get() {
77
- return _lightGreen.default;
77
+ return _lightGreen["default"];
78
78
  }
79
79
  });
80
80
  Object.defineProperty(exports, "lime", {
81
81
  enumerable: true,
82
82
  get: function get() {
83
- return _lime.default;
83
+ return _lime["default"];
84
84
  }
85
85
  });
86
86
  Object.defineProperty(exports, "orange", {
87
87
  enumerable: true,
88
88
  get: function get() {
89
- return _orange.default;
89
+ return _orange["default"];
90
90
  }
91
91
  });
92
92
  Object.defineProperty(exports, "pink", {
93
93
  enumerable: true,
94
94
  get: function get() {
95
- return _pink.default;
95
+ return _pink["default"];
96
96
  }
97
97
  });
98
98
  Object.defineProperty(exports, "purple", {
99
99
  enumerable: true,
100
100
  get: function get() {
101
- return _purple.default;
101
+ return _purple["default"];
102
102
  }
103
103
  });
104
104
  Object.defineProperty(exports, "red", {
105
105
  enumerable: true,
106
106
  get: function get() {
107
- return _red.default;
107
+ return _red["default"];
108
108
  }
109
109
  });
110
110
  Object.defineProperty(exports, "teal", {
111
111
  enumerable: true,
112
112
  get: function get() {
113
- return _teal.default;
113
+ return _teal["default"];
114
114
  }
115
115
  });
116
116
  Object.defineProperty(exports, "yellow", {
117
117
  enumerable: true,
118
118
  get: function get() {
119
- return _yellow.default;
119
+ return _yellow["default"];
120
120
  }
121
121
  });
122
122
 
@@ -1,13 +1,13 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireWildcard = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
4
4
 
5
- var _typeof = require("@babel/runtime/helpers/typeof");
5
+ var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
6
6
 
7
7
  Object.defineProperty(exports, "__esModule", {
8
8
  value: true
9
9
  });
10
- exports.default = void 0;
10
+ exports["default"] = void 0;
11
11
 
12
12
  var _react = _interopRequireDefault(require("react"));
13
13
 
@@ -151,24 +151,20 @@ var mstTypes = _interopRequireWildcard(require("../util/types/mst"));
151
151
 
152
152
  var _list = _interopRequireDefault(require("./list"));
153
153
 
154
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
155
-
156
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
157
-
158
154
  // this is all the stuff that the pluginManager re-exports for plugins to use
159
155
  // @material-ui components
160
156
  // material-ui lab
161
157
  var libs = {
162
158
  mobx: mobx,
163
159
  'mobx-state-tree': mst,
164
- react: _react.default,
160
+ react: _react["default"],
165
161
  'react-dom': ReactDom,
166
162
  'mobx-react': mxreact,
167
- 'prop-types': _propTypes.default,
163
+ 'prop-types': _propTypes["default"],
168
164
  // material-ui 1st-level components
169
165
  '@material-ui/core': MUICore,
170
166
  // special case so plugins can easily use @material-ui/icons; don't remove
171
- '@material-ui/core/SvgIcon': _SvgIcon.default,
167
+ '@material-ui/core/SvgIcon': _SvgIcon["default"],
172
168
  '@material-ui/core/utils': MUIUtils,
173
169
  // end special case
174
170
  '@material-ui/lab': MUILab,
@@ -177,48 +173,48 @@ var libs = {
177
173
  // material-ui subcomponents, should get rid of these
178
174
  '@material-ui/core/colors': MUIColors,
179
175
  '@material-ui/core/styles': MUIStyles,
180
- '@material-ui/core/Box': _Box.default,
181
- '@material-ui/core/Button': _Button.default,
182
- '@material-ui/core/ButtonGroup': _ButtonGroup.default,
183
- '@material-ui/core/Card': _Card.default,
184
- '@material-ui/core/CardContent': _CardContent.default,
185
- '@material-ui/core/Container': _Container.default,
186
- '@material-ui/core/Checkbox': _Checkbox.default,
187
- '@material-ui/core/Dialog': _Dialog.default,
188
- '@material-ui/core/FormGroup': _FormGroup.default,
189
- '@material-ui/core/FormLabel': _FormLabel.default,
190
- '@material-ui/core/FormControl': _FormControl.default,
191
- '@material-ui/core/FormControlLabel': _FormControlLabel.default,
192
- '@material-ui/core/Grid': _Grid.default,
193
- '@material-ui/core/Icon': _Icon.default,
194
- '@material-ui/core/IconButton': _IconButton.default,
195
- '@material-ui/core/InputAdornment': _InputAdornment.default,
196
- '@material-ui/core/LinearProgress': _LinearProgress.default,
197
- '@material-ui/core/ListItemIcon': _ListItemIcon.default,
198
- '@material-ui/core/ListItemText': _ListItemText.default,
199
- '@material-ui/core/Menu': _Menu.default,
200
- '@material-ui/core/MenuItem': _MenuItem.default,
201
- '@material-ui/core/RadioGroup': _RadioGroup.default,
202
- '@material-ui/core/Radio': _Radio.default,
203
- '@material-ui/core/Select': _Select.default,
204
- '@material-ui/core/Snackbar': _Snackbar.default,
205
- '@material-ui/core/SnackbarContent': _SnackbarContent.default,
206
- '@material-ui/core/TextField': _TextField.default,
207
- '@material-ui/core/Tooltip': _Tooltip.default,
208
- '@material-ui/core/Typography': _Typography.default,
176
+ '@material-ui/core/Box': _Box["default"],
177
+ '@material-ui/core/Button': _Button["default"],
178
+ '@material-ui/core/ButtonGroup': _ButtonGroup["default"],
179
+ '@material-ui/core/Card': _Card["default"],
180
+ '@material-ui/core/CardContent': _CardContent["default"],
181
+ '@material-ui/core/Container': _Container["default"],
182
+ '@material-ui/core/Checkbox': _Checkbox["default"],
183
+ '@material-ui/core/Dialog': _Dialog["default"],
184
+ '@material-ui/core/FormGroup': _FormGroup["default"],
185
+ '@material-ui/core/FormLabel': _FormLabel["default"],
186
+ '@material-ui/core/FormControl': _FormControl["default"],
187
+ '@material-ui/core/FormControlLabel': _FormControlLabel["default"],
188
+ '@material-ui/core/Grid': _Grid["default"],
189
+ '@material-ui/core/Icon': _Icon["default"],
190
+ '@material-ui/core/IconButton': _IconButton["default"],
191
+ '@material-ui/core/InputAdornment': _InputAdornment["default"],
192
+ '@material-ui/core/LinearProgress': _LinearProgress["default"],
193
+ '@material-ui/core/ListItemIcon': _ListItemIcon["default"],
194
+ '@material-ui/core/ListItemText': _ListItemText["default"],
195
+ '@material-ui/core/Menu': _Menu["default"],
196
+ '@material-ui/core/MenuItem': _MenuItem["default"],
197
+ '@material-ui/core/RadioGroup': _RadioGroup["default"],
198
+ '@material-ui/core/Radio': _Radio["default"],
199
+ '@material-ui/core/Select': _Select["default"],
200
+ '@material-ui/core/Snackbar': _Snackbar["default"],
201
+ '@material-ui/core/SnackbarContent': _SnackbarContent["default"],
202
+ '@material-ui/core/TextField': _TextField["default"],
203
+ '@material-ui/core/Tooltip': _Tooltip["default"],
204
+ '@material-ui/core/Typography': _Typography["default"],
209
205
  // @material-ui lab
210
- '@material-ui/lab/ToggleButton': _ToggleButton.default,
211
- '@material-ui/lab/ToggleButtonGroup': _ToggleButtonGroup.default,
212
- '@jbrowse/core/Plugin': _Plugin.default,
206
+ '@material-ui/lab/ToggleButton': _ToggleButton["default"],
207
+ '@material-ui/lab/ToggleButtonGroup': _ToggleButtonGroup["default"],
208
+ '@jbrowse/core/Plugin': _Plugin["default"],
213
209
  '@jbrowse/core/pluggableElementTypes': pluggableElementTypes,
214
- '@jbrowse/core/pluggableElementTypes/ViewType': _ViewType.default,
215
- '@jbrowse/core/pluggableElementTypes/AdapterType': _AdapterType.default,
216
- '@jbrowse/core/pluggableElementTypes/DisplayType': _DisplayType.default,
217
- '@jbrowse/core/pluggableElementTypes/TrackType': _TrackType.default,
218
- '@jbrowse/core/pluggableElementTypes/WidgetType': _WidgetType.default,
210
+ '@jbrowse/core/pluggableElementTypes/ViewType': _ViewType["default"],
211
+ '@jbrowse/core/pluggableElementTypes/AdapterType': _AdapterType["default"],
212
+ '@jbrowse/core/pluggableElementTypes/DisplayType': _DisplayType["default"],
213
+ '@jbrowse/core/pluggableElementTypes/TrackType': _TrackType["default"],
214
+ '@jbrowse/core/pluggableElementTypes/WidgetType': _WidgetType["default"],
219
215
  '@jbrowse/core/pluggableElementTypes/models': pluggableElementTypeModels,
220
216
  '@jbrowse/core/pluggableElementTypes/renderers/ServerSideRendererType': ServerSideRendererType,
221
- '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType': _CircularChordRendererType.default,
217
+ '@jbrowse/core/pluggableElementTypes/renderers/CircularChordRendererType': _CircularChordRendererType["default"],
222
218
  '@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType': BoxRendererType,
223
219
  '@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType': FeatureRendererType,
224
220
  '@jbrowse/core/pluggableElementTypes/renderers/RendererType': RendererType,
@@ -229,7 +225,7 @@ var libs = {
229
225
  '@jbrowse/core/util/color': coreColor,
230
226
  '@jbrowse/core/util/layouts': coreLayouts,
231
227
  '@jbrowse/core/util/tracks': trackUtils,
232
- '@jbrowse/core/util/Base1DViewModel': _Base1DViewModel.default,
228
+ '@jbrowse/core/util/Base1DViewModel': _Base1DViewModel["default"],
233
229
  '@jbrowse/core/util/io': coreIo,
234
230
  '@jbrowse/core/util/mst-reflection': coreMstReflection,
235
231
  '@jbrowse/core/util/rxjs': rxjs,
@@ -238,11 +234,11 @@ var libs = {
238
234
  }; // make sure that all the items in the ReExports/list array (used by build systems and such)
239
235
  // are included here. it's OK if there are some additional ones that are not in the list
240
236
 
241
- _list.default.forEach(function (name) {
237
+ _list["default"].forEach(function (name) {
242
238
  if (!(name in libs)) {
243
239
  throw new Error("ReExports/modules is missing ".concat(name));
244
240
  }
245
241
  });
246
242
 
247
243
  var _default = libs;
248
- exports.default = _default;
244
+ exports["default"] = _default;
@@ -1,43 +1,33 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = exports.RefSequenceResult = void 0;
8
+ exports["default"] = exports.RefSequenceResult = void 0;
9
9
 
10
- var _assertThisInitialized2 = _interopRequireDefault(require("@babel/runtime/helpers/assertThisInitialized"));
10
+ var _inherits2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/inherits.js"));
11
11
 
12
- var _inherits2 = _interopRequireDefault(require("@babel/runtime/helpers/inherits"));
12
+ var _createSuper2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createSuper.js"));
13
13
 
14
- var _possibleConstructorReturn2 = _interopRequireDefault(require("@babel/runtime/helpers/possibleConstructorReturn"));
14
+ var _classCallCheck2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
15
15
 
16
- var _getPrototypeOf2 = _interopRequireDefault(require("@babel/runtime/helpers/getPrototypeOf"));
17
-
18
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
19
-
20
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
21
-
22
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
23
-
24
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
25
-
26
- function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
16
+ var _createClass2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createClass.js"));
27
17
 
28
18
  var BaseResult = /*#__PURE__*/function () {
29
19
  function BaseResult(args) {
30
- (0, _classCallCheck2.default)(this, BaseResult);
31
- (0, _defineProperty2.default)(this, "label", void 0);
32
- (0, _defineProperty2.default)(this, "renderingComponent", void 0);
33
- (0, _defineProperty2.default)(this, "displayString", void 0);
34
- (0, _defineProperty2.default)(this, "matchedAttribute", void 0);
35
- (0, _defineProperty2.default)(this, "matchedObject", void 0);
36
- (0, _defineProperty2.default)(this, "textSearchAdapter", void 0);
37
- (0, _defineProperty2.default)(this, "relevance", void 0);
38
- (0, _defineProperty2.default)(this, "trackId", void 0);
39
- (0, _defineProperty2.default)(this, "score", void 0);
40
- (0, _defineProperty2.default)(this, "locString", void 0);
20
+ (0, _classCallCheck2["default"])(this, BaseResult);
21
+ this.label = void 0;
22
+ this.renderingComponent = void 0;
23
+ this.displayString = void 0;
24
+ this.matchedAttribute = void 0;
25
+ this.matchedObject = void 0;
26
+ this.textSearchAdapter = void 0;
27
+ this.relevance = void 0;
28
+ this.trackId = void 0;
29
+ this.score = void 0;
30
+ this.locString = void 0;
41
31
  this.label = args.label;
42
32
  this.locString = args.locString;
43
33
  this.renderingComponent = args.renderingComponent;
@@ -50,7 +40,7 @@ var BaseResult = /*#__PURE__*/function () {
50
40
  this.score = args.score || 1;
51
41
  }
52
42
 
53
- (0, _createClass2.default)(BaseResult, [{
43
+ (0, _createClass2["default"])(BaseResult, [{
54
44
  key: "getLabel",
55
45
  value: function getLabel() {
56
46
  return this.label;
@@ -95,26 +85,26 @@ var BaseResult = /*#__PURE__*/function () {
95
85
  return BaseResult;
96
86
  }();
97
87
 
98
- exports.default = BaseResult;
88
+ exports["default"] = BaseResult;
99
89
 
100
90
  var RefSequenceResult = /*#__PURE__*/function (_BaseResult) {
101
- (0, _inherits2.default)(RefSequenceResult, _BaseResult);
91
+ (0, _inherits2["default"])(RefSequenceResult, _BaseResult);
102
92
 
103
- var _super = _createSuper(RefSequenceResult);
93
+ var _super = (0, _createSuper2["default"])(RefSequenceResult);
104
94
 
105
95
  function RefSequenceResult(args) {
106
96
  var _args$refName;
107
97
 
108
98
  var _this;
109
99
 
110
- (0, _classCallCheck2.default)(this, RefSequenceResult);
100
+ (0, _classCallCheck2["default"])(this, RefSequenceResult);
111
101
  _this = _super.call(this, args);
112
- (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "refName", void 0);
102
+ _this.refName = void 0;
113
103
  _this.refName = (_args$refName = args.refName) !== null && _args$refName !== void 0 ? _args$refName : '';
114
104
  return _this;
115
105
  }
116
106
 
117
- (0, _createClass2.default)(RefSequenceResult, [{
107
+ (0, _createClass2["default"])(RefSequenceResult, [{
118
108
  key: "getLocation",
119
109
  value: function getLocation() {
120
110
  return this.refName;
@@ -1,22 +1,18 @@
1
1
  "use strict";
2
2
 
3
- var _typeof = require("@babel/runtime/helpers/typeof");
3
+ var _interopRequireWildcard = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireWildcard.js")["default"];
4
4
 
5
5
  var _BaseResults = _interopRequireWildcard(require("./BaseResults"));
6
6
 
7
- function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
8
-
9
- function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
10
-
11
7
  test('create BaseResult', function () {
12
- var baseResult = new _BaseResults.default({
8
+ var baseResult = new _BaseResults["default"]({
13
9
  label: 'chr1'
14
10
  });
15
11
  expect(baseResult.getLabel()).toEqual('chr1');
16
12
  expect(baseResult.getLocation()).toEqual('chr1');
17
13
  });
18
14
  test('create LocationResult', function () {
19
- var locationResult = new _BaseResults.default({
15
+ var locationResult = new _BaseResults["default"]({
20
16
  label: 'location result',
21
17
  locString: 'chr1:1-900'
22
18
  });
@@ -16,8 +16,8 @@ export interface SearchScope {
16
16
  tracks?: Array<string>;
17
17
  }
18
18
  export default class TextSearchManager {
19
- adapterCache: QuickLRU;
20
19
  pluginManager: PluginManager;
20
+ adapterCache: QuickLRU;
21
21
  constructor(pluginManager: PluginManager);
22
22
  /**
23
23
  * Instantiate/initialize list of relevant adapters
@@ -1,23 +1,21 @@
1
1
  "use strict";
2
2
 
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
3
+ var _interopRequireDefault = require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/interopRequireDefault.js")["default"];
4
4
 
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports.default = void 0;
8
+ exports["default"] = void 0;
9
9
 
10
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
10
+ var _index = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/regenerator/index.js"));
11
11
 
12
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
12
+ var _asyncToGenerator2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/asyncToGenerator.js"));
13
13
 
14
- var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
14
+ var _toConsumableArray2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/toConsumableArray.js"));
15
15
 
16
- var _classCallCheck2 = _interopRequireDefault(require("@babel/runtime/helpers/classCallCheck"));
16
+ var _classCallCheck2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/classCallCheck.js"));
17
17
 
18
- var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
19
-
20
- var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
18
+ var _createClass2 = _interopRequireDefault(require("/home/ubuntu/jbrowse-components/node_modules/@babel/runtime/helpers/esm/createClass.js"));
21
19
 
22
20
  var _QuickLRU = _interopRequireDefault(require("../util/QuickLRU"));
23
21
 
@@ -26,11 +24,10 @@ var _configuration = require("../configuration");
26
24
  /* text-searching controller */
27
25
  var TextSearchManager = /*#__PURE__*/function () {
28
26
  function TextSearchManager(pluginManager) {
29
- (0, _classCallCheck2.default)(this, TextSearchManager);
30
- (0, _defineProperty2.default)(this, "adapterCache", void 0);
31
- (0, _defineProperty2.default)(this, "pluginManager", void 0);
27
+ (0, _classCallCheck2["default"])(this, TextSearchManager);
32
28
  this.pluginManager = pluginManager;
33
- this.adapterCache = new _QuickLRU.default({
29
+ this.adapterCache = void 0;
30
+ this.adapterCache = new _QuickLRU["default"]({
34
31
  maxSize: 15
35
32
  });
36
33
  }
@@ -39,7 +36,7 @@ var TextSearchManager = /*#__PURE__*/function () {
39
36
  */
40
37
 
41
38
 
42
- (0, _createClass2.default)(TextSearchManager, [{
39
+ (0, _createClass2["default"])(TextSearchManager, [{
43
40
  key: "loadTextSearchAdapters",
44
41
  value: function loadTextSearchAdapters(searchScope) {
45
42
  var _this = this;
@@ -76,7 +73,7 @@ var TextSearchManager = /*#__PURE__*/function () {
76
73
  tracks = _ref.tracks;
77
74
 
78
75
  var assemblyName = searchScope.assemblyName;
79
- return [].concat((0, _toConsumableArray2.default)(this.getAdaptersWithAssembly(assemblyName, aggregateTextSearchAdapters)), (0, _toConsumableArray2.default)(this.getAdaptersWithAssembly(assemblyName, tracks.map(function (track) {
76
+ return [].concat((0, _toConsumableArray2["default"])(this.getAdaptersWithAssembly(assemblyName, aggregateTextSearchAdapters)), (0, _toConsumableArray2["default"])(this.getAdaptersWithAssembly(assemblyName, tracks.map(function (track) {
80
77
  return (0, _configuration.readConfObject)(track, ['textSearching', 'textSearchAdapter']);
81
78
  }))));
82
79
  }
@@ -98,9 +95,9 @@ var TextSearchManager = /*#__PURE__*/function () {
98
95
  }, {
99
96
  key: "search",
100
97
  value: function () {
101
- var _search = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args, searchScope, rankFn) {
98
+ var _search = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_index["default"].mark(function _callee(args, searchScope, rankFn) {
102
99
  var textSearchAdapters, results;
103
- return _regenerator.default.wrap(function _callee$(_context) {
100
+ return _index["default"].wrap(function _callee$(_context) {
104
101
  while (1) {
105
102
  switch (_context.prev = _context.next) {
106
103
  case 0:
@@ -149,4 +146,4 @@ var TextSearchManager = /*#__PURE__*/function () {
149
146
  return TextSearchManager;
150
147
  }();
151
148
 
152
- exports.default = TextSearchManager;
149
+ exports["default"] = TextSearchManager;