@jbrowse/core 1.4.4 → 1.5.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/BaseFeatureWidget/BaseFeatureDetail.d.ts +4 -4
- package/BaseFeatureWidget/BaseFeatureDetail.js +27 -8
- package/BaseFeatureWidget/SequenceFeatureDetails.js +10 -10
- package/BaseFeatureWidget/index.js +1 -1
- package/BaseFeatureWidget/types.d.ts +1 -1
- package/BaseFeatureWidget/util.js +3 -3
- package/CorePlugin.d.ts +0 -1
- package/CorePlugin.js +13 -1
- package/PluginLoader.d.ts +26 -4
- package/PluginLoader.js +337 -51
- package/PluginManager.d.ts +18 -11
- package/PluginManager.js +53 -31
- package/ReExports/list.js +1 -1
- package/ReExports/material-ui-colors.js +38 -38
- package/ReExports/modules.d.ts +19 -20
- package/ReExports/modules.js +10 -3
- package/TextSearch/BaseResults.d.ts +5 -14
- package/TextSearch/BaseResults.js +16 -58
- package/TextSearch/BaseResults.test.js +1 -11
- package/TextSearch/TextSearchManager.d.ts +3 -3
- package/TextSearch/TextSearchManager.js +1 -1
- package/assemblyManager/assembly.d.ts +21 -8
- package/assemblyManager/assembly.js +163 -120
- package/assemblyManager/assemblyConfigSchema.d.ts +3 -0
- package/assemblyManager/{assemblyConfigSchemas.js → assemblyConfigSchema.js} +35 -27
- package/assemblyManager/assemblyManager.d.ts +169 -60
- package/assemblyManager/index.d.ts +1 -1
- package/assemblyManager/index.js +5 -5
- package/configuration/configurationSchema.d.ts +3 -2
- package/configuration/configurationSchema.js +7 -10
- package/configuration/configurationSchema.test.js +4 -2
- package/configuration/configurationSlot.js +5 -4
- package/configuration/index.js +4 -4
- package/configuration/util.js +5 -5
- package/data_adapters/BaseAdapter.d.ts +5 -3
- package/data_adapters/BaseAdapter.js +7 -4
- package/data_adapters/BaseAdapter.test.js +4 -2
- package/data_adapters/CytobandAdapter.d.ts +8 -0
- package/data_adapters/CytobandAdapter.js +128 -0
- package/data_adapters/dataAdapterCache.js +3 -3
- package/package.json +7 -7
- package/pluggableElementTypes/AdapterType.d.ts +9 -1
- package/pluggableElementTypes/AdapterType.js +20 -0
- package/pluggableElementTypes/InternetAccountType.d.ts +12 -0
- package/pluggableElementTypes/InternetAccountType.js +64 -0
- package/pluggableElementTypes/PluggableElementBase.d.ts +1 -2
- package/pluggableElementTypes/PluggableElementBase.js +2 -3
- package/pluggableElementTypes/RpcMethodType.d.ts +3 -0
- package/pluggableElementTypes/RpcMethodType.js +269 -26
- package/pluggableElementTypes/RpcMethodType.test.d.ts +4 -0
- package/pluggableElementTypes/RpcMethodType.test.js +118 -0
- package/pluggableElementTypes/ViewType.d.ts +1 -1
- package/pluggableElementTypes/WidgetType.d.ts +1 -0
- package/pluggableElementTypes/index.d.ts +7 -3
- package/pluggableElementTypes/index.js +127 -1
- package/pluggableElementTypes/models/BaseDisplayModel.d.ts +6 -6
- package/pluggableElementTypes/models/BaseDisplayModel.js +1 -3
- package/pluggableElementTypes/models/BaseViewModel.js +13 -15
- package/pluggableElementTypes/models/InternetAccountModel.d.ts +24 -0
- package/pluggableElementTypes/models/InternetAccountModel.js +85 -0
- package/pluggableElementTypes/models/baseInternetAccountConfig.d.ts +4 -0
- package/pluggableElementTypes/models/baseInternetAccountConfig.js +25 -0
- package/pluggableElementTypes/models/index.d.ts +3 -0
- package/pluggableElementTypes/models/index.js +24 -8
- package/pluggableElementTypes/renderers/BoxRendererType.js +1 -1
- package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.d.ts +1 -1
- package/pluggableElementTypes/renderers/ComparativeServerSideRendererType.js +15 -6
- package/pluggableElementTypes/renderers/FeatureRendererType.d.ts +3 -3
- package/pluggableElementTypes/renderers/FeatureRendererType.js +17 -8
- package/pluggableElementTypes/renderers/RendererType.d.ts +1 -0
- package/pluggableElementTypes/renderers/RendererType.js +4 -1
- package/pluggableElementTypes/renderers/ServerSideRenderedContent.js +1 -1
- package/pluggableElementTypes/renderers/index.d.ts +9 -0
- package/pluggableElementTypes/renderers/index.js +63 -0
- package/rpc/BaseRpcDriver.js +5 -9
- package/rpc/BaseRpcDriver.test.js +6 -6
- package/rpc/RpcManager.d.ts +1 -1
- package/rpc/RpcManager.js +44 -16
- package/rpc/WebWorkerRpcDriver.js +3 -3
- package/rpc/coreRpcMethods.d.ts +2 -1
- package/rpc/coreRpcMethods.js +109 -75
- package/rpc/remoteAbortSignals.js +2 -2
- package/ui/App.d.ts +17 -4
- package/ui/App.js +55 -41
- package/ui/Drawer.d.ts +6 -14
- package/ui/Drawer.js +11 -12
- package/ui/DrawerWidget.d.ts +5 -3
- package/ui/DrawerWidget.js +100 -61
- package/ui/ErrorMessage.d.ts +5 -0
- package/ui/ErrorMessage.js +54 -0
- package/ui/FileSelector/FileSelector.d.ts +11 -0
- package/ui/FileSelector/FileSelector.js +198 -0
- package/ui/FileSelector/LocalFileChooser.d.ts +7 -0
- package/ui/FileSelector/LocalFileChooser.js +79 -0
- package/ui/FileSelector/UrlChooser.d.ts +9 -0
- package/ui/FileSelector/UrlChooser.js +41 -0
- package/ui/FileSelector/index.d.ts +2 -0
- package/ui/FileSelector/index.js +13 -0
- package/ui/Icons.d.ts +4 -0
- package/ui/Icons.js +34 -0
- package/ui/Logo.js +1 -1
- package/ui/PrerenderedCanvas.d.ts +1 -0
- package/ui/PrerenderedCanvas.js +4 -1
- package/ui/ResizeHandle.d.ts +2 -3
- package/ui/ResizeHandle.js +6 -7
- package/ui/SanitizedHTML.js +1 -1
- package/ui/Snackbar.js +4 -6
- package/ui/SnackbarModel.d.ts +16 -0
- package/ui/SnackbarModel.js +56 -0
- package/ui/Tooltip.d.ts +1 -1
- package/ui/index.js +24 -24
- package/ui/theme.js +5 -5
- package/util/QuickLRU.d.ts +1 -1
- package/util/QuickLRU.js +3 -3
- package/util/aborting.d.ts +1 -1
- package/util/aborting.js +10 -11
- package/util/analytics.d.ts +2 -2
- package/util/analytics.js +20 -7
- package/util/blockTypes.d.ts +11 -6
- package/util/blockTypes.js +7 -1
- package/util/color/cssColorsLevel4.js +1 -1
- package/util/color/index.js +5 -5
- package/util/compositeMap.js +3 -3
- package/util/index.d.ts +6 -16
- package/util/index.js +76 -100
- package/util/io/RemoteFileWithRangeCache.d.ts +17 -0
- package/util/io/RemoteFileWithRangeCache.js +266 -0
- package/util/io/index.d.ts +4 -2
- package/util/io/index.js +134 -25
- package/util/jexl.js +4 -1
- package/util/layouts/BaseLayout.d.ts +3 -0
- package/util/layouts/GranularRectLayout.d.ts +19 -10
- package/util/layouts/GranularRectLayout.js +459 -100
- package/util/layouts/GranularRectLayout.test.js +57 -10
- package/util/layouts/PrecomputedLayout.js +2 -1
- package/util/layouts/index.d.ts +7 -0
- package/util/layouts/index.js +68 -0
- package/util/mst-reflection.js +3 -3
- package/util/offscreenCanvasPonyfill.js +1 -1
- package/util/range.js +1 -1
- package/util/simpleFeature.js +1 -1
- package/util/stats.js +2 -2
- package/util/tracks.d.ts +31 -362
- package/util/tracks.js +74 -190
- package/util/types/index.d.ts +54 -10
- package/util/types/index.js +110 -8
- package/util/types/mst.d.ts +46 -2
- package/util/types/mst.js +56 -8
- package/util/types/util.d.ts +1 -1
- package/util/when.js +1 -1
- package/assemblyManager/assemblyConfigSchemas.d.ts +0 -7
- package/ui/FileSelector.d.ts +0 -9
- package/ui/FileSelector.js +0 -150
- package/util/io/LocalFile.d.ts +0 -18
- package/util/io/LocalFile.js +0 -220
- package/util/io/rangeFetcher.d.ts +0 -3
- package/util/io/rangeFetcher.js +0 -236
- package/value.d.ts +0 -1
- package/value.js +0 -10
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@@ -7,7 +7,7 @@ export declare const BaseDisplay: import("mobx-state-tree").IModelType<{
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error:
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error: unknown;
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} & {
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readonly RenderingComponent: React.FC<{
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model: import("mobx-state-tree").ModelInstanceTypeProps<{
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@@ -16,14 +16,14 @@ export declare const BaseDisplay: import("mobx-state-tree").IModelType<{
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error:
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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blockState?: Record<string, any> | undefined;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}> & {
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rendererTypeName: string;
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error:
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error: unknown;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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}, {
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rendererTypeName: string;
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error:
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error: unknown;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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*/
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regionCannotBeRendered(): undefined;
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} & {
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setError(error?:
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setError(error?: unknown): void;
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setRpcDriverName(rpcDriverName: string): void;
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reload(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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* string of text describes why it cannot be rendered
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* react node allows user to force load at current setting
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*/
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regionCannotBeRendered: function regionCannotBeRendered()
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/* region */
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{
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regionCannotBeRendered: function regionCannotBeRendered() {
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return undefined;
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}
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};
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var BaseViewModel = _mobxStateTree.types.model('BaseView', {
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id: _mst.ElementId,
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displayName: _mobxStateTree.types.maybe(_mobxStateTree.types.string)
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}
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}).volatile(function
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/* self */
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() {
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return {
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width: 800
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};
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}).views(function
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/* self */
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() {
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return {
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menuItems: function menuItems() {
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return [];
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}
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};
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}).actions(function (self) {
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return {
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setDisplayName: function setDisplayName(name) {
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import React from 'react';
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import { Instance } from 'mobx-state-tree';
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import { RemoteFileWithRangeCache } from '../../util/io';
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import { FileLocation, UriLocation, AnyReactComponentType } from '@jbrowse/core/util/types';
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export declare const InternetAccount: import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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}, {
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readonly name: any;
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readonly internetAccountId: any;
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readonly tokenType: any;
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readonly accountConfig: any;
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readonly toggleContents: React.ReactNode;
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readonly SelectorComponent: AnyReactComponentType | undefined;
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readonly selectorLabel: string | undefined;
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handlesLocation(location: FileLocation): boolean;
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} & {
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openLocation(location: UriLocation): RemoteFileWithRangeCache;
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getPreAuthorizationInformation(location: UriLocation): Promise<{
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internetAccountType: string;
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}>;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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export declare type BaseInternetAccountStateModel = typeof InternetAccount;
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export declare type BaseInternetAccountModel = Instance<BaseInternetAccountStateModel>;
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value: true
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});
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exports.InternetAccount = void 0;
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var _mobxStateTree = require("mobx-state-tree");
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var _configuration = require("../../configuration");
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var _mst = require("../../util/types/mst");
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var InternetAccount = _mobxStateTree.types.model('InternetAccount', {
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id: _mst.ElementId,
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get name() {
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},
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get internetAccountId() {
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},
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get tokenType() {
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},
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get accountConfig() {
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},
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get toggleContents() {
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},
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get selectorLabel() {
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},
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}
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};
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}).actions(function (self) {
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openLocation: function openLocation(location) {
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},
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getPreAuthorizationInformation: function getPreAuthorizationInformation(location) {
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return (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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while (1) {
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case 0:
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return _context.abrupt("return", {
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internetAccountType: self.type
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case 1:
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};
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});
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|
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export default class RendererType extends PluggableElementBase {
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|
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46
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(0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "pluginManager", void 0);
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_this.ReactComponent = stuff.ReactComponent;
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@@ -100,7 +101,9 @@ var RendererType = /*#__PURE__*/function (_PluggableElementBase) {
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}, {
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key: "freeResources",
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value: function
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value: function
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/* specification: {} */
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freeResources() {
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return 0;
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}]);
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@@ -67,7 +67,7 @@ function ServerSideRenderedContent(props) {
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(0, _reactDom.unmountComponentAtNode)(domNode);
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}
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};
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-
}, [html, jbrowseTheme, rest]);
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}, [html, jbrowseTheme, rest, RenderingComponent]);
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return /*#__PURE__*/_react.default.createElement("div", {
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ref: ssrContainerNode,
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"data-html-size": html.length,
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@@ -0,0 +1,9 @@
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import BoxRendererType from './BoxRendererType';
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import CircularChordRendererType from './CircularChordRendererType';
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import ComparativeServerSideRendererType from './ComparativeServerSideRendererType';
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import FeatureRendererType from './FeatureRendererType';
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import RendererType, { RenderProps } from './RendererType';
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import ServerSideRenderedContent from './ServerSideRenderedContent';
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import ServerSideRendererType from './ServerSideRendererType';
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export { BoxRendererType, CircularChordRendererType, ComparativeServerSideRendererType, FeatureRendererType, RendererType, ServerSideRenderedContent, ServerSideRendererType, };
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export type { RenderProps };
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@@ -0,0 +1,63 @@
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"use strict";
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var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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Object.defineProperty(exports, "BoxRendererType", {
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enumerable: true,
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get: function get() {
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return _BoxRendererType.default;
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}
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});
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Object.defineProperty(exports, "CircularChordRendererType", {
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enumerable: true,
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get: function get() {
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return _CircularChordRendererType.default;
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}
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});
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Object.defineProperty(exports, "ComparativeServerSideRendererType", {
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enumerable: true,
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get: function get() {
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return _ComparativeServerSideRendererType.default;
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}
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});
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Object.defineProperty(exports, "FeatureRendererType", {
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enumerable: true,
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});
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Object.defineProperty(exports, "RendererType", {
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enumerable: true,
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get: function get() {
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return _RendererType.default;
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}
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});
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Object.defineProperty(exports, "ServerSideRenderedContent", {
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enumerable: true,
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get: function get() {
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return _ServerSideRenderedContent.default;
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}
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});
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Object.defineProperty(exports, "ServerSideRendererType", {
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enumerable: true,
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get: function get() {
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return _ServerSideRendererType.default;
|
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}
|
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});
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var _BoxRendererType = _interopRequireDefault(require("./BoxRendererType"));
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var _CircularChordRendererType = _interopRequireDefault(require("./CircularChordRendererType"));
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var _ComparativeServerSideRendererType = _interopRequireDefault(require("./ComparativeServerSideRendererType"));
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var _FeatureRendererType = _interopRequireDefault(require("./FeatureRendererType"));
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var _RendererType = _interopRequireDefault(require("./RendererType"));
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var _ServerSideRenderedContent = _interopRequireDefault(require("./ServerSideRenderedContent"));
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var _ServerSideRendererType = _interopRequireDefault(require("./ServerSideRendererType"));
|